Metagenome / Metatranscriptome Family F071761

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071761
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	88 residues
Representative Sequence	MRKRRIIVRQRSRWTVDEWERGWDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Number of Associated Samples	105
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.77 %
% of genes near scaffold ends (potentially truncated)	46.72 %
% of genes from short scaffolds (< 2000 bps)	84.43 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.311 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.492 % of family members)
Environment Ontology (ENVO)	Unclassified (29.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.721 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.70% β-sheet: 0.00% Coil/Unstructured: 51.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.8.11.1: AF1782-like	d2oo2a1	2oo2	0.7199
a.213.1.2: DinB-like	d2hkva1	2hkv	0.70926
f.63.1.1: Claudin	d3jbre_	3jbr	0.70657
a.29.3.0: automated matches	d5zw7a2	5zw7	0.69607
c.66.1.31: Catalytic, N-terminal domain of histone methyltransferase Dot1l	d1u2za_	1u2z	0.6847

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00072	Response_reg	9.02
PF11964	SpoIIAA-like	8.20
PF13432	TPR_16	5.74
PF00582	Usp	1.64
PF08238	Sel1	0.82
PF00106	adh_short	0.82
PF00196	GerE	0.82
PF11752	DUF3309	0.82
PF13424	TPR_12	0.82
PF13146	TRL	0.82
PF12681	Glyoxalase_2	0.82
PF01810	LysE	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.95 %
Unclassified	root	N/A	27.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.13 %
Unclassified	root	N/A	27.05 %
Viruses	superkingdom	All Organisms → Viruses	0.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.31 %
Unclassified	root	N/A	27.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	52.46 %
Unclassified	root	N/A	27.05 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	34.43 %
Unclassified	root	N/A	27.05 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	8.20 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	34.43 %
Unclassified	root	N/A	27.05 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	8.20 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.82 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	32.79 %
Unclassified	root	N/A	27.05 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	8.20 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.82 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	32.79 %
Unclassified	root	N/A	27.05 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	8.20 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.82 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Name	Rank	Taxonomy	Distribution
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	28.69 %
Unclassified	root	N/A	27.05 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	8.20 %
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	0.82 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.82 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9035485	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1487	Open in IMG/M
2162886006\|SwRhRL3b_contig_473021	Not Available	1310	Open in IMG/M
2162886007\|SwRhRL2b_contig_317135	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2453	Open in IMG/M
2209111006\|2214884968	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	573	Open in IMG/M
3300000559\|F14TC_103655023	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	601	Open in IMG/M
3300000559\|F14TC_105630660	Not Available	531	Open in IMG/M
3300000787\|JGI11643J11755_11759026	Not Available	1880	Open in IMG/M
3300000953\|JGI11615J12901_10271311	All Organisms → cellular organisms → Bacteria → Nitrospirae	2263	Open in IMG/M
3300000956\|JGI10216J12902_104023250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	1603	Open in IMG/M
3300001431\|F14TB_107221714	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	554	Open in IMG/M
3300003324\|soilH2_10133659	All Organisms → cellular organisms → Bacteria	3673	Open in IMG/M
3300003349\|JGI26129J50193_1002268	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1347	Open in IMG/M
3300003383\|JGI26140J50224_103786	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	565	Open in IMG/M
3300003987\|Ga0055471_10014892	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1770	Open in IMG/M
3300003993\|Ga0055468_10126633	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	743	Open in IMG/M
3300004643\|Ga0062591_100754169	All Organisms → cellular organisms → Bacteria → Nitrospirae	890	Open in IMG/M
3300005277\|Ga0065716_1015373	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	562	Open in IMG/M
3300005289\|Ga0065704_10086993	Not Available	3066	Open in IMG/M
3300005295\|Ga0065707_10577684	Not Available	704	Open in IMG/M
3300005333\|Ga0070677_10008822	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	3403	Open in IMG/M
3300005343\|Ga0070687_100251407	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1098	Open in IMG/M
3300005354\|Ga0070675_100719873	Not Available	910	Open in IMG/M
3300005406\|Ga0070703_10559892	Not Available	522	Open in IMG/M
3300005439\|Ga0070711_100229250	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300005439\|Ga0070711_101905259	Not Available	522	Open in IMG/M
3300005466\|Ga0070685_11116089	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	596	Open in IMG/M
3300005563\|Ga0068855_102525125	Not Available	511	Open in IMG/M
3300005618\|Ga0068864_100856225	Not Available	896	Open in IMG/M
3300005718\|Ga0068866_10078010	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1771	Open in IMG/M
3300005841\|Ga0068863_100895717	Not Available	887	Open in IMG/M
3300005937\|Ga0081455_10007191	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	11761	Open in IMG/M
3300006755\|Ga0079222_10833896	Not Available	760	Open in IMG/M
3300006844\|Ga0075428_102294581	Not Available	555	Open in IMG/M
3300006845\|Ga0075421_101691995	Not Available	685	Open in IMG/M
3300006852\|Ga0075433_10910197	All Organisms → cellular organisms → Bacteria → Nitrospirae	767	Open in IMG/M
3300006871\|Ga0075434_100575094	All Organisms → cellular organisms → Archaea	1146	Open in IMG/M
3300006876\|Ga0079217_10141236	All Organisms → cellular organisms → Bacteria → Nitrospirae	1151	Open in IMG/M
3300006880\|Ga0075429_100636302	Not Available	934	Open in IMG/M
3300006894\|Ga0079215_10011696	All Organisms → cellular organisms → Bacteria → Nitrospirae	2703	Open in IMG/M
3300006903\|Ga0075426_10198697	Not Available	1453	Open in IMG/M
3300006904\|Ga0075424_101725543	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	663	Open in IMG/M
3300006914\|Ga0075436_100084610	Not Available	2201	Open in IMG/M
3300007004\|Ga0079218_12704030	Not Available	592	Open in IMG/M
3300007004\|Ga0079218_12752920	Not Available	588	Open in IMG/M
3300007004\|Ga0079218_12816156	Not Available	583	Open in IMG/M
3300007076\|Ga0075435_100797076	Not Available	822	Open in IMG/M
3300009094\|Ga0111539_11551409	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	768	Open in IMG/M
3300009147\|Ga0114129_10174065	All Organisms → cellular organisms → Bacteria	2932	Open in IMG/M
3300009177\|Ga0105248_12819332	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	554	Open in IMG/M
3300009545\|Ga0105237_12421866	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	535	Open in IMG/M
3300010362\|Ga0126377_11899740	Not Available	671	Open in IMG/M
3300010373\|Ga0134128_10474909	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1395	Open in IMG/M
3300011333\|Ga0127502_10497919	Not Available	970	Open in IMG/M
3300012506\|Ga0157324_1018335	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	686	Open in IMG/M
3300012514\|Ga0157330_1087470	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	510	Open in IMG/M
3300012883\|Ga0157281_1084378	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	551	Open in IMG/M
3300012901\|Ga0157288_10115112	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300012904\|Ga0157282_10075891	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	888	Open in IMG/M
3300012906\|Ga0157295_10040223	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1064	Open in IMG/M
3300012906\|Ga0157295_10121915	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	745	Open in IMG/M
3300012941\|Ga0162652_100064031	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	618	Open in IMG/M
3300012951\|Ga0164300_10140312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1119	Open in IMG/M
3300012951\|Ga0164300_10455725	Not Available	719	Open in IMG/M
3300012955\|Ga0164298_10146532	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300012957\|Ga0164303_10181700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1146	Open in IMG/M
3300012957\|Ga0164303_10547702	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300012958\|Ga0164299_10103954	Not Available	1482	Open in IMG/M
3300012958\|Ga0164299_10154887	All Organisms → cellular organisms → Bacteria → Nitrospirae	1273	Open in IMG/M
3300012958\|Ga0164299_10628379	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300012960\|Ga0164301_10241652	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300012960\|Ga0164301_10302909	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1077	Open in IMG/M
3300012960\|Ga0164301_10312006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1064	Open in IMG/M
3300012961\|Ga0164302_10023973	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
3300012961\|Ga0164302_10096507	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300012984\|Ga0164309_10559478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	886	Open in IMG/M
3300012985\|Ga0164308_11043874	Not Available	729	Open in IMG/M
3300013102\|Ga0157371_10106301	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1992	Open in IMG/M
3300013307\|Ga0157372_13386875	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	507	Open in IMG/M
3300014302\|Ga0075310_1005374	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	2251	Open in IMG/M
3300015200\|Ga0173480_10013810	All Organisms → cellular organisms → Bacteria → Nitrospirae	3283	Open in IMG/M
3300015371\|Ga0132258_11535289	Not Available	1682	Open in IMG/M
3300015372\|Ga0132256_100053226	All Organisms → cellular organisms → Bacteria	3769	Open in IMG/M
3300015373\|Ga0132257_100218206	All Organisms → cellular organisms → Bacteria → Nitrospirae	2267	Open in IMG/M
3300015373\|Ga0132257_104122197	All Organisms → cellular organisms → Bacteria → Nitrospirae	529	Open in IMG/M
3300015374\|Ga0132255_100917006	Not Available	1311	Open in IMG/M
3300022892\|Ga0247753_1026529	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	672	Open in IMG/M
3300022898\|Ga0247745_1036926	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	744	Open in IMG/M
3300023057\|Ga0247797_1026027	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	775	Open in IMG/M
3300023260\|Ga0247798_1044628	Not Available	603	Open in IMG/M
3300023266\|Ga0247789_1017279	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300025315\|Ga0207697_10123576	Not Available	1115	Open in IMG/M
3300025893\|Ga0207682_10058622	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1607	Open in IMG/M
3300025911\|Ga0207654_10220912	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1257	Open in IMG/M
3300025916\|Ga0207663_11666070	Not Available	513	Open in IMG/M
3300025918\|Ga0207662_10009652	All Organisms → cellular organisms → Bacteria → Nitrospirae	5319	Open in IMG/M
3300025930\|Ga0207701_10012835	All Organisms → cellular organisms → Bacteria	8172	Open in IMG/M
3300025931\|Ga0207644_10439371	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1071	Open in IMG/M
3300025935\|Ga0207709_11254520	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	612	Open in IMG/M
3300025937\|Ga0207669_10198032	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300026035\|Ga0207703_10412344	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1255	Open in IMG/M
3300026078\|Ga0207702_10984386	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300026142\|Ga0207698_10763947	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	966	Open in IMG/M
3300027614\|Ga0209970_1015220	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300027617\|Ga0210002_1032507	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	870	Open in IMG/M
3300027876\|Ga0209974_10467489	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	502	Open in IMG/M
3300027886\|Ga0209486_10088611	All Organisms → cellular organisms → Bacteria → Nitrospirae	1622	Open in IMG/M
3300027886\|Ga0209486_10661284	Not Available	669	Open in IMG/M
3300028809\|Ga0247824_10088551	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1621	Open in IMG/M
3300031547\|Ga0310887_10182939	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1126	Open in IMG/M
3300031548\|Ga0307408_100019945	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	4517	Open in IMG/M
3300031562\|Ga0310886_10079379	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300031716\|Ga0310813_10441826	All Organisms → Viruses → Predicted Viral	1127	Open in IMG/M
3300031716\|Ga0310813_10451817	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1115	Open in IMG/M
3300031740\|Ga0307468_100902856	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	766	Open in IMG/M
3300031740\|Ga0307468_101615238	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	606	Open in IMG/M
3300031740\|Ga0307468_101628111	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	604	Open in IMG/M
3300031824\|Ga0307413_10022190	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3416	Open in IMG/M
3300031854\|Ga0310904_10646768	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	726	Open in IMG/M
3300031995\|Ga0307409_100831049	All Organisms → cellular organisms → Bacteria → Nitrospirae	933	Open in IMG/M
3300032013\|Ga0310906_10793312	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	668	Open in IMG/M
3300032205\|Ga0307472_100937964	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300033412\|Ga0310810_10072231	Not Available	4166	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.84%
Host-Associated	Host-Associated	40.16%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.38%
Plants	Host-Associated → Plants	40.16%
Aquatic	Environmental → Aquatic	2.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.85%
Marine	Environmental → Aquatic → Marine	1.64%
Freshwater	Environmental → Aquatic → Freshwater	0.82%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.30%
Loam	Environmental → Terrestrial → Soil → Loam	8.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.39%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.28%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.46%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.10%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.28%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.28%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.28%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.46%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.46%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.64%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.82%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated	Open in IMG/M
3300003383	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM	Host-Associated	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_00630950	2088090015	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNES
SwRhRL3b_0231.00001100	2162886006	Switchgrass Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR
SwRhRL2b_0410.00003250	2162886007	Switchgrass Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
2213938184	2209111006	Arabidopsis Rhizosphere	MRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
F14TC_1036550231	3300000559	Soil	MRKRRIIVRKRSRWTAEEWEREWDLAMTRIESVPALVEKHPFFQDCLTVLDGAFEDDNRLRFELGVSALIDFCTDVVD
F14TC_1056306601	3300000559	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVEQQTLFQDCLTVLDGAFEDDNRLRFELGVSALIDFCT
JGI11643J11755_117590265	3300000787	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDXVDAGGCEQWWNETR*
JGI11615J12901_102713112	3300000953	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPALVEQQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVDAGGCEQWWNETR*
JGI10216J12902_1040232501	3300000956	Soil	MRKRRMLVRRRTSGTVDEWERGWELVMTRIDSVPTVVKEQPLFQDCLAVVDGAFADGNYIQFELAMNALIDMCTKADGEQ*
F14TB_1072217142	3300001431	Soil	EKESSGPRIRHAAVPHRGGIIMRKRRIIVRKRSRWTAEEWEREWDLAMTRIESVPALVEKQPFFQDCLTVLDGAFEDGNRLRFELGVSALTDFCTDVVDAGECEQWWNESR*
soilH2_101336595	3300003324	Sugarcane Root And Bulk Soil	MKRRRIIVKRRSRWTVDEWERGWALAMTRIEGVPPHVEAQPVFQDCLAVLNRAFSDGNRLRFELGLGYLMNFCIEAVDEGACKRWWR*
JGI26129J50193_10022682	3300003349	Arabidopsis Thaliana Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
JGI26140J50224_1037862	3300003383	Arabidopsis Thaliana Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQ
Ga0055471_100148923	3300003987	Natural And Restored Wetlands	MRKRRIVIKQRSHSSVREWERGWQLAMTRIDGVPTLVKEQPMFQDCLAVLDGAFADGDRLRFELGLNVLITVCA
Ga0055468_101266331	3300003993	Natural And Restored Wetlands	MRKRRIVIKQRSHSTVREWERGWQLAMTRIDGVPTLVKEQPMFQDCLAVLDGAFADGDRLRFELGLNVLITVCAEAVENGDCEQWWN*
Ga0062591_1007541692	3300004643	Soil	RKGSRWTADEWEREWGIAMTRIESVPGLVEQQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0065716_10153731	3300005277	Arabidopsis Rhizosphere	MRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0065704_100869934	3300005289	Switchgrass Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0065707_105776841	3300005295	Switchgrass Rhizosphere	MSKRRTIVKRRTRWTVDEWEGGWDLAMTRIEGVPTLVEEQPIFRDCLTVLNGAFADGNHLGFELGLNALIDFCTDTVNEG
Ga0070677_100088222	3300005333	Miscanthus Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGASADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0070687_1002514072	3300005343	Switchgrass Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDREQWWK*
Ga0070675_1007198731	3300005354	Miscanthus Rhizosphere	MRRRRVIVRRRTRWTLDEWNRGWDIAMSRIEGAPTDIRTECIFQDCLTVLDWAFANGNGRRFELGLNALMDFC
Ga0070703_105598921	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDA
Ga0070711_1002292504	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRKRCIVVRKRSRWTADEWEREWGIAMTRIESVPALVEQQPLFQDCLTVLDGAFADGNRLRFELGLSALIDFCTDIVSTGDCEQWWN*
Ga0070711_1019052592	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RKRRIIVKRRTRGIVDEWERGWELVMTRIESAPTVVKEQPIFQDCLTVLNGAFADGNYLRFELGLNALMDFCTDRINDGDCE*
Ga0070685_111160891	3300005466	Switchgrass Rhizosphere	IIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0068855_1025251251	3300005563	Corn Rhizosphere	RWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0068864_1008562252	3300005618	Switchgrass Rhizosphere	VRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0068866_100780102	3300005718	Miscanthus Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFC
Ga0068863_1008957171	3300005841	Switchgrass Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPALVEQQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCT
Ga0081455_1000719125	3300005937	Tabebuia Heterophylla Rhizosphere	MRKRRIIVKQQTRGTVDEWERGWAVTMTRIEAAPTVVKEQPIFHDCLTVLNGAFADGNHLRFELGLNALMDFCTDMVSEGSCDQWWN*
Ga0079222_108338962	3300006755	Agricultural Soil	MRKRRMLVRRRTSGTVDEWERGWELVMTRIDSVPTVVKEQPLFQDCLAVVDGAFADGNFIQFELAMNALIDMCTKADGEQ*
Ga0075428_1022945812	3300006844	Populus Rhizosphere	MRKKRIIVRKGSRWTADEWEREWGRAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0075421_1016919953	3300006845	Populus Rhizosphere	MRKKRIIVRKGSRWTADEWEREWGRAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVD
Ga0075433_109101972	3300006852	Populus Rhizosphere	MRKRRIIVRKRSGWTAEEWEREWDLAMTRIKSVPALVEKQPFFQDCLTVLDGAFEDGNRLRFELGVSALTDFCTDVVDAGDCEQWWNESR*
Ga0075434_1005750943	3300006871	Populus Rhizosphere	MRKRCIVVRKRSRWTADEWEREWGIAMTRIESVPALVEQQPLFQDCLTVLDGAFADGNRLRFELGLSALIDFCTDIVSTGDCEKWWN*
Ga0079217_101412361	3300006876	Agricultural Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIVDGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNETVSRGECTQWWS*
Ga0075429_1006363021	3300006880	Populus Rhizosphere	MRKKRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDA
Ga0079215_100116963	3300006894	Agricultural Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIIDGVPPLVEKHPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNETVSRGEYTQWWS*
Ga0075426_101986971	3300006903	Populus Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQW
Ga0075424_1017255432	3300006904	Populus Rhizosphere	AEEWEREWDLAMTRIESVPALVEKQPFFQDCLTVLDGAFEDGNRLRFELGVSALIDFCTDVVDAGDCEQWWNESR*
Ga0075436_1000846101	3300006914	Populus Rhizosphere	MRKKRIIVRKGSRWTADEWEREWGRAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTD
Ga0079218_127040302	3300007004	Agricultural Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIVDGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNETVSRGEYTQWWS*
Ga0079218_127529201	3300007004	Agricultural Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIIDGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALID
Ga0079218_128161562	3300007004	Agricultural Soil	MRKRRIIVKRRRRSTAQEWERGWDLAMTIIDGVPSLVEKQPIFQDCLTVLDGAFVDGNSLRFELGLSALIDFCNETVSRGECTQWWS*
Ga0075435_1007970762	3300007076	Populus Rhizosphere	MRKKRIIVRKGSRWTADEWEREWGRAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNES
Ga0111539_115514093	3300009094	Populus Rhizosphere	MRKKRIIVRKGSRWTADEWEREWGRAMTRIESVPGLVERQTLFQDCLTVLDGASVDGNRLRFELGLSALNDFCTDVVDAGECEQWWNESR*
Ga0114129_101740654	3300009147	Populus Rhizosphere	MRKRRIIVRKRSRWTAEEWEREWDLAMTRIESVPALVEKQPFFQDCLTVLDGAFEDGNRLRFELGVSALIDFCTDVVDAGDCEQWWNESR*
Ga0105248_128193321	3300009177	Switchgrass Rhizosphere	RGMVDELEGGCDLAMTRIDVFPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0105237_124218661	3300009545	Corn Rhizosphere	KNQKEQKQYKEACSPYTLRSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0126377_118997402	3300010362	Tropical Forest Soil	MSRRRVIVRQRTRWTVAEWVQRWDLAMARIDGVPALLEKQAIFQDCLTVLNGAFADGDRLRFELAVNVLVDFCAEAVNQGDCEQWWK*
Ga0134128_104749091	3300010373	Terrestrial Soil	MRKKRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0127502_104979192	3300011333	Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIIDGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNETVSRGEYTQWWS*
Ga0157324_10183351	3300012506	Arabidopsis Rhizosphere	MRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGNCEQWWK*
Ga0157330_10874701	3300012514	Soil	KEQKQYKEACSPYTPRSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0157281_10843781	3300012883	Soil	RSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETELIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0157288_101151121	3300012901	Soil	PSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0157282_100758911	3300012904	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTGLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0157295_100402231	3300012906	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDYLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0157295_101219152	3300012906	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCT
Ga0162652_1000640311	3300012941	Soil	SLYPSSRAMMRKRRIIVRKRSRWTANEWERECGFAMTRIESVPALVEKQPIFQDCLTVLDGAFADGNRLRFELGLRAMIDLCTETVNKGECEQWWK*
Ga0164300_101403122	3300012951	Soil	MRKRRIIVRKRSRWTADEWEREWGFAMTRIESVPALVEQQPIFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164300_104557251	3300012951	Soil	MMSKRRTIVKRRTRWTVDDWEGGWDLAMTRIEGVTTPVEEQPIFRDCLTVLNGAFADGNHLGFELGLNALIDFCTDTVNEGDFAQWWK*
Ga0164298_101465321	3300012955	Soil	MRKRRIIVRKRSRWTADEWEREWGFAMTRIESVPALVEQQPLFQDCLTVLDGAFADGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164303_101817002	3300012957	Soil	PESRTSRLDLEYAMPSPHQGGVIMRKGRIIVRKRSRWTADEWEREWGFAMTRIESVPALVEQQPIFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164303_105477021	3300012957	Soil	GGVIMRKRRIIVRKRSRWTADEWEREWGLAMTRIESVPALVEKQPIFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDLVDAGTCDQWWNESR*
Ga0164299_101039541	3300012958	Soil	MMSKRRTIVKRRTRWTVDDWEGGWDLAMTRIEGVPTLVEEQPIFRDCLTVLNGAFADGNHLGFELGLNALIDFCTDTVNEGDFAQWWK*
Ga0164299_101548872	3300012958	Soil	MRKGRIIVRKRSRWTADEWEREWGFAMTRIESVPALVEQQPIFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164299_106283791	3300012958	Soil	GPRIGHVVRHRGGVIMRKRRIIVRKRSRWTADEWEREWGLAMTRIESVPALVEKQPLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDLVDAGTCDQWWNESR*
Ga0164301_102416522	3300012960	Soil	MRKRRIIVRKRSRWTADEWEREWGLAMTRIESVPALVEKQPLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDLVDAGTCDQWWNESR*
Ga0164301_103029091	3300012960	Soil	MMSKRRTIVKRRTRWTVDDWEGGWDLAMTRIEGVPTLVEERPIFRDCLTVLNGAFADGNHLGFELGLNALIDFCTDTVNEGDFAQWWK*
Ga0164301_103120062	3300012960	Soil	MRKKRIIVRKRSRWTVDEWEREWGFAMTRIESVPVLVEQQPIFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164302_100239736	3300012961	Soil	MRKRRIIVRKRSRWTADEWEREWGFAMTRIESVPALVEQQPIFQDCLTVVDGAFVGGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164302_100965073	3300012961	Soil	MMRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0164309_105594782	3300012984	Soil	RKRSRWTADEWEREWGFAMTRIESVPALVEQQPIFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVSTGGCEQWWD*
Ga0164308_110438741	3300012985	Soil	MMSKRRTIVKRRTRWTVDDWEGGWDLAMTRIEGVPTLVEEQPIFRDCLNVLNGAFADGNHLGFELGLNALLDFCTDTVNEGDFAQWWK*
Ga0157371_101063011	3300013102	Corn Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGIVEQQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0157372_133868751	3300013307	Corn Rhizosphere	TSSIENELSGPRIRHAPVPHRGGIMRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR*
Ga0075310_10053743	3300014302	Natural And Restored Wetlands	MRKRRIVIKQRSHSTVREWERGWQLAMTRIDGVPTLVKEQSMFQDCLAVLDGAFADGDRLRFELGLNVLITVCAEAVENGDCEQWWN*
Ga0173480_100138107	3300015200	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGIGALIDFCTERVNKGDCEQWWK*
Ga0132258_115352894	3300015371	Arabidopsis Rhizosphere	MPPFPHRGGVIMRKRCIVVRKRSRWTADEWEREWAIAMTRIESVPALVEQQPLFQDCLTVLDGAFADGNRLRFELGLSALIDFCTDIVSTGDCEQWWN*
Ga0132256_1000532265	3300015372	Arabidopsis Rhizosphere	MMRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGNCEQWWK*
Ga0132257_1002182064	3300015373	Arabidopsis Rhizosphere	MMRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK*
Ga0132257_1041221972	3300015373	Arabidopsis Rhizosphere	MKKRRIIVRKRSRWTADEWEREWVFAMTRIESVPALVEKLPFFQDCLTVLNGAFEDGHRLRFELGVSALIDFCTDVVDAGDYEQWWNESR*
Ga0132255_1009170061	3300015374	Arabidopsis Rhizosphere	MRKRCIVVRKRSRWTADEWEREWAIAMTRIESVPALVEQQPLFQDCLTVLDGAFADGNRLRFELGLSALMDFCTDIVSTGDCEQWWN*
Ga0247753_10265291	3300022892	Soil	KQYKEACSPYTPRSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0247745_10369261	3300022898	Soil	KEQKQYKEACSPYTPRSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0247797_10260272	3300023057	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTFVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0247798_10446282	3300023260	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFC
Ga0247789_10172791	3300023266	Soil	RRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207697_101235764	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVV
Ga0207682_100586225	3300025893	Miscanthus Rhizosphere	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNE
Ga0207654_102209123	3300025911	Corn Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTGLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207663_116660702	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DLGNAMPPSPHRGGVIMRKRCIVVRKRSRWTADEWEQEWAIAMTRIESVPPLVEQQPLFQDCLTVLDGAFADGNRLRFELGLSALIDFCTDIVSTGDCEQWWN
Ga0207662_100096521	3300025918	Switchgrass Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDREQWWK
Ga0207701_100128354	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207644_104393712	3300025931	Switchgrass Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLDALIDFCTERVNKGDREQWWK
Ga0207709_112545201	3300025935	Miscanthus Rhizosphere	SENQKEQKQYKEACSPYTPRSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207669_101980321	3300025937	Miscanthus Rhizosphere	AMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207703_104123444	3300026035	Switchgrass Rhizosphere	SRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207702_109843861	3300026078	Corn Rhizosphere	SPYTPRSRPSLYPSRRAMMRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0207698_107639473	3300026142	Corn Rhizosphere	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWGK
Ga0209970_10152201	3300027614	Arabidopsis Thaliana Rhizosphere	RWVELMRKKRIIVRRRSSWTVREWERGWAVAITRIDRAPTLVEQQPIFQDCLTVLNGAFADGNGFRFELGLNALMDFCAEAVSTGDCKQWWE
Ga0210002_10325072	3300027617	Arabidopsis Thaliana Rhizosphere	MRKKRIIVRRRSSWTVREWERGWAVAITRIDRAPTLVEQQPIFQDCLTVLNGAFADGNGFRFELGLNALMDFCAEAVSTGDCKQWWE
Ga0209974_104674892	3300027876	Arabidopsis Thaliana Rhizosphere	RRSSWTVREWERGWAVAITRIDRAPTLVEQQPIFQDCLTVLNGAFADGNGFRFELGLNALMDFCAEAVSTGDCKQWWE
Ga0209486_100886112	3300027886	Agricultural Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIVDGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNETVSRGEYTQWWS
Ga0209486_106612841	3300027886	Agricultural Soil	MRKRRIIVKRSRRSTAQEWERGWDLAMTIIDGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNET
Ga0247824_100885511	3300028809	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNGLRFELGLGALIDFCAERVNKGDCEQWW
Ga0310887_101829393	3300031547	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0307408_1000199455	3300031548	Rhizosphere	MRKRRIIVKRSRRSTAQEWERGWNLAMTIIVGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIDFCNETVSRGECTQWWS
Ga0310886_100793793	3300031562	Soil	RRAMMRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTSVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0310813_104418263	3300031716	Soil	MRKKRIIVRKGSRWTADEWEREWGRAMTRIESVPGLVERQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR
Ga0310813_104518171	3300031716	Soil	SIENELSGPRIRHALVPHRGGVMRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPGLVEQQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDVVDAGDCEQWWNESR
Ga0307468_1009028561	3300031740	Hardwood Forest Soil	MRKRRIIVRQRSRWTVDEWERGWDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTETINKGDCEQWWK
Ga0307468_1016152381	3300031740	Hardwood Forest Soil	RKRRIIVRQRSRWTVDEWERGWDLAMTRIDGVPPFVETKSIFQDCLSVLDGAFADGDRLRFELGLSALIDFCTETISKGDCKQWWN
Ga0307468_1016281112	3300031740	Hardwood Forest Soil	MRKRRIIVRRRSRWTVQEWERGWDLAMTRIQGVPSLVETEPIFQDCLTVLDGAFADGNRLGFELGLGALIDFCTATV
Ga0307413_100221907	3300031824	Rhizosphere	MRKRRIIVKRSRRSTAQEWERGWNLAMTIIVGVPPLVEKQPIFQDCLTVLDGAFVDGNNLRFELGLSALIYFCNETVSRGECTQWWS
Ga0310904_106467681	3300031854	Soil	MRKRRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0307409_1008310491	3300031995	Rhizosphere	MRKRRIIVKRSRRSTAQEWERGWDLAMTIIDGVPTLVEKQPIFQDCLTVLDGAFVDGNSLRFELGLSALIDFCNETVS
Ga0310906_107933121	3300032013	Soil	MRERRIIVRQRSRWTVDEWERGCDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKG
Ga0307472_1009379642	3300032205	Hardwood Forest Soil	MRKRRIIVRQRSRWTVDEWERGWDLAMTRIDGVPTLVETEPIFQDCLTVLDGAFADGNRLRFELGLGALIDFCTERVNKGDCEQWWK
Ga0310810_100722316	3300033412	Soil	MRKRRIIVRKGSRWTADEWEREWGIAMTRIESVPALVEQQTLFQDCLTVLDGAFVDGNRLRFELGLSALIDFCTDIVDAGGCEQWWNETR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071761

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences