Metagenome / Metatranscriptome Family F071840

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071840
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	90 residues
Representative Sequence	MNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Number of Associated Samples	54
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.52 %
% of genes near scaffold ends (potentially truncated)	73.55 %
% of genes from short scaffolds (< 2000 bps)	95.04 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (95.868 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (43.802 % of family members)
Environment Ontology (ENVO)	Unclassified (76.860 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.240 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.07% β-sheet: 0.00% Coil/Unstructured: 31.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00238	Ribosomal_L14	87.60
PF00115	COX1	1.65
PF00146	NADHdh	1.65

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0093	Ribosomal protein L14	Translation, ribosomal structure and biogenesis [J]	87.60
COG0650	Formate hydrogenlyase subunit HyfC	Energy production and conversion [C]	1.65
COG1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	Energy production and conversion [C]	1.65

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.87 %
All Organisms	root	All Organisms	4.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.87 %
cellular organisms	root	All Organisms → cellular organisms	4.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.87 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.87 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.87 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.87 %
Ciliophora	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005527\|Ga0068876_10482036	Not Available	683	Open in IMG/M
3300010192\|Ga0127506_1008910	Not Available	576	Open in IMG/M
3300010375\|Ga0105239_11274910	Not Available	847	Open in IMG/M
3300012212\|Ga0150985_101763304	Not Available	727	Open in IMG/M
3300012212\|Ga0150985_101805164	Not Available	516	Open in IMG/M
3300012212\|Ga0150985_106244719	Not Available	799	Open in IMG/M
3300012212\|Ga0150985_106547893	Not Available	682	Open in IMG/M
3300012212\|Ga0150985_108320001	Not Available	853	Open in IMG/M
3300012212\|Ga0150985_108982963	Not Available	691	Open in IMG/M
3300012212\|Ga0150985_113976974	Not Available	978	Open in IMG/M
3300012212\|Ga0150985_114155591	Not Available	626	Open in IMG/M
3300012212\|Ga0150985_114614786	Not Available	1381	Open in IMG/M
3300012212\|Ga0150985_115803819	Not Available	810	Open in IMG/M
3300012212\|Ga0150985_116515570	Not Available	690	Open in IMG/M
3300012212\|Ga0150985_116576637	Not Available	675	Open in IMG/M
3300012212\|Ga0150985_119123890	Not Available	569	Open in IMG/M
3300012212\|Ga0150985_121030211	Not Available	573	Open in IMG/M
3300012212\|Ga0150985_121899231	Not Available	574	Open in IMG/M
3300012469\|Ga0150984_100532745	Not Available	822	Open in IMG/M
3300012469\|Ga0150984_101409586	Not Available	893	Open in IMG/M
3300012469\|Ga0150984_103359455	Not Available	689	Open in IMG/M
3300012469\|Ga0150984_104340323	Not Available	598	Open in IMG/M
3300012469\|Ga0150984_106456693	Not Available	712	Open in IMG/M
3300012469\|Ga0150984_107269358	Not Available	673	Open in IMG/M
3300012469\|Ga0150984_109729244	Not Available	578	Open in IMG/M
3300012469\|Ga0150984_110045908	Not Available	645	Open in IMG/M
3300012469\|Ga0150984_111482261	Not Available	753	Open in IMG/M
3300012469\|Ga0150984_113970758	All Organisms → cellular organisms → Bacteria → Proteobacteria	2114	Open in IMG/M
3300012469\|Ga0150984_114168539	Not Available	717	Open in IMG/M
3300012469\|Ga0150984_114823904	Not Available	706	Open in IMG/M
3300012469\|Ga0150984_117219829	Not Available	650	Open in IMG/M
3300012469\|Ga0150984_118124086	Not Available	1098	Open in IMG/M
3300012469\|Ga0150984_118328004	Not Available	578	Open in IMG/M
3300012469\|Ga0150984_119035646	Not Available	620	Open in IMG/M
3300012469\|Ga0150984_119961601	Not Available	628	Open in IMG/M
3300012469\|Ga0150984_121470282	Not Available	703	Open in IMG/M
3300012469\|Ga0150984_121702310	Not Available	639	Open in IMG/M
3300012469\|Ga0150984_122021973	Not Available	544	Open in IMG/M
3300012822\|Ga0160490_100371	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	6421	Open in IMG/M
3300013051\|Ga0164274_104953	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	2922	Open in IMG/M
3300013872\|Ga0181463_1002868	All Organisms → cellular organisms → Bacteria	4309	Open in IMG/M
3300017414\|Ga0182195_1105184	Not Available	678	Open in IMG/M
3300017421\|Ga0182213_1255811	Not Available	501	Open in IMG/M
3300017445\|Ga0182198_1033302	Not Available	972	Open in IMG/M
3300017691\|Ga0182212_1085531	Not Available	703	Open in IMG/M
3300017692\|Ga0182210_1075737	Not Available	709	Open in IMG/M
3300020069\|Ga0197907_10110152	Not Available	614	Open in IMG/M
3300020069\|Ga0197907_11281074	Not Available	553	Open in IMG/M
3300020069\|Ga0197907_11475702	Not Available	625	Open in IMG/M
3300020077\|Ga0206351_10834355	Not Available	682	Open in IMG/M
3300020077\|Ga0206351_10867871	Not Available	585	Open in IMG/M
3300020078\|Ga0206352_10291556	Not Available	765	Open in IMG/M
3300020080\|Ga0206350_10900836	Not Available	707	Open in IMG/M
3300020081\|Ga0206354_10092345	Not Available	653	Open in IMG/M
3300020610\|Ga0154015_1288453	Not Available	769	Open in IMG/M
3300025904\|Ga0207647_10513915	Not Available	667	Open in IMG/M
3300028585\|Ga0265797_10651501	Not Available	608	Open in IMG/M
3300030828\|Ga0315869_109021	Not Available	1047	Open in IMG/M
3300030828\|Ga0315869_114082	Not Available	858	Open in IMG/M
3300030828\|Ga0315869_123533	Not Available	670	Open in IMG/M
3300030864\|Ga0315855_130427	Not Available	543	Open in IMG/M
3300031066\|Ga0315821_113303	Not Available	742	Open in IMG/M
3300031066\|Ga0315821_116184	Not Available	684	Open in IMG/M
3300031080\|Ga0315829_131548	Not Available	562	Open in IMG/M
3300031105\|Ga0315823_107426	Not Available	987	Open in IMG/M
3300031130\|Ga0315814_118619	Not Available	560	Open in IMG/M
3300031135\|Ga0315847_120172	Not Available	644	Open in IMG/M
3300031428\|Ga0315832_127050	Not Available	619	Open in IMG/M
3300031458\|Ga0315836_125547	Not Available	504	Open in IMG/M
3300031461\|Ga0315812_126201	Not Available	511	Open in IMG/M
3300032466\|Ga0214503_1157503	Not Available	709	Open in IMG/M
3300032466\|Ga0214503_1161811	Not Available	699	Open in IMG/M
3300032466\|Ga0214503_1170758	Not Available	679	Open in IMG/M
3300032466\|Ga0214503_1188737	Not Available	642	Open in IMG/M
3300032514\|Ga0214502_1136186	Not Available	942	Open in IMG/M
3300032514\|Ga0214502_1177505	Not Available	817	Open in IMG/M
3300032514\|Ga0214502_1242946	Not Available	687	Open in IMG/M
3300032561\|Ga0316222_1107561	Not Available	1101	Open in IMG/M
3300032589\|Ga0214500_1081459	Not Available	914	Open in IMG/M
3300032589\|Ga0214500_1095483	Not Available	844	Open in IMG/M
3300032589\|Ga0214500_1125606	Not Available	732	Open in IMG/M
3300032589\|Ga0214500_1136716	Not Available	699	Open in IMG/M
3300032593\|Ga0321338_1019705	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1948	Open in IMG/M
3300032593\|Ga0321338_1115069	Not Available	950	Open in IMG/M
3300032593\|Ga0321338_1201225	Not Available	715	Open in IMG/M
3300032593\|Ga0321338_1204308	Not Available	710	Open in IMG/M
3300032625\|Ga0214501_1201128	Not Available	634	Open in IMG/M
3300032625\|Ga0214501_1203429	Not Available	630	Open in IMG/M
3300032781\|Ga0314742_1073898	Not Available	583	Open in IMG/M
3300032914\|Ga0314750_1043753	Not Available	1017	Open in IMG/M
3300032914\|Ga0314750_1105619	Not Available	656	Open in IMG/M
3300032915\|Ga0314749_1085708	Not Available	679	Open in IMG/M
3300032916\|Ga0314734_1058840	Not Available	776	Open in IMG/M
3300032976\|Ga0314752_1071046	Not Available	669	Open in IMG/M
3300032976\|Ga0314752_1071284	Not Available	668	Open in IMG/M
3300033523\|Ga0314768_1187802	Not Available	726	Open in IMG/M
3300033523\|Ga0314768_1204893	Not Available	692	Open in IMG/M
3300033523\|Ga0314768_1214819	Not Available	674	Open in IMG/M
3300033523\|Ga0314768_1252834	Not Available	617	Open in IMG/M
3300033525\|Ga0314758_1118866	Not Available	731	Open in IMG/M
3300033525\|Ga0314758_1191257	Not Available	555	Open in IMG/M
3300033526\|Ga0314761_1084326	Not Available	706	Open in IMG/M
3300033530\|Ga0314760_1156014	Not Available	556	Open in IMG/M
3300033532\|Ga0314767_1148597	Not Available	588	Open in IMG/M
3300033533\|Ga0314770_1242665	Not Available	565	Open in IMG/M
3300033533\|Ga0314770_1260738	Not Available	543	Open in IMG/M
3300033534\|Ga0314757_1088740	Not Available	745	Open in IMG/M
3300033534\|Ga0314757_1119110	Not Available	637	Open in IMG/M
3300033535\|Ga0314759_1073169	Not Available	1053	Open in IMG/M
3300033535\|Ga0314759_1233704	Not Available	584	Open in IMG/M
3300033537\|Ga0314766_1179666	Not Available	767	Open in IMG/M
3300033537\|Ga0314766_1189361	Not Available	745	Open in IMG/M
3300033537\|Ga0314766_1192572	Not Available	739	Open in IMG/M
3300033537\|Ga0314766_1217963	Not Available	691	Open in IMG/M
3300033537\|Ga0314766_1282060	Not Available	599	Open in IMG/M
3300033542\|Ga0314769_1331106	Not Available	511	Open in IMG/M
3300033543\|Ga0314765_1147395	Not Available	739	Open in IMG/M
3300033543\|Ga0314765_1163308	Not Available	700	Open in IMG/M
3300033543\|Ga0314765_1199482	Not Available	628	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	76.03%
Environmental	Environmental	23.14%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	76.03%
Terrestrial	Environmental → Terrestrial	21.49%
Aquatic	Environmental → Aquatic	1.65%
Built Environment	Engineered → Built Environment	0.83%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	43.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.22%
Plant Litter	Environmental → Terrestrial → Plant Litter	11.57%
Soil	Environmental → Terrestrial → Soil	9.92%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Peat Moss	Host-Associated → Plants → Peat Moss	0.83%
Unclassified	Engineered → Built Environment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	43.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	12.40%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	11.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	9.92%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.83%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	43.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	12.40%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	11.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.92%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.83%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.83%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	43.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	17.36%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	12.40%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	11.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.83%
Clean Room	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300010192	Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fc - Sphagnum fallax MT (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012822	Enriched soil microbial communities from UW Madison campus, WI, USA - DID2934_E24_Lignin MG	Environmental	Open in IMG/M
3300013051	Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig BY (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013872	Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1-11 gowning area SPAdes reassembly	Engineered	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017421	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017445	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017691	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017692	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300028585	Plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30	Environmental	Open in IMG/M
3300030828	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T27 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030864	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T22 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031066	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T11 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031080	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T14 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031105	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T12 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031130	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031135	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T20 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031428	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T15 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031458	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031461	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T8 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032466	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032514	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032561	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011	Environmental	Open in IMG/M
3300032589	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032593	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032625	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032781	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032914	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032915	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032916	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032976	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033523	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033525	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033526	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033530	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033532	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033533	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033534	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033535	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033537	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033542	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033543	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068876_104820361	3300005527	Freshwater Lake	LFLTDLFGLFLSYYYINSFEFLIIVFFLLVGSVICVNLNKLNRVNKSMNYHDMFLVFDFFKDFVKFVFMRKQNLVDQENHPASTRIFKKKLK*
Ga0127506_10089102	3300010192	Host-Associated	YYYINSFEFILVGLLLLFVSLVCVNLNKFNKNFKLNNYYNLFTLFDFFNDFINFFFLRKQNLVDQEINPASTRIFKKKQKNNQ*
Ga0105239_112749101	3300010375	Corn Rhizosphere	MNDLFGLYIGYYLLNSFEFILIGILLLIGSIVCVNINKFNKNLKSNNYYDLLTIFDFFDDFVKYLFMRKQNLVDQTIHPSSTRIFKKKINK*
Ga0150985_1017633041	3300012212	Avena Fatua Rhizosphere	DLFGLYLSYYQINSFEFIFIGLLLLVASLICVNLNKFNRNIKSNNYYELITLFDFFEEFVKFNFMRKQNLVDQEISSSSTRMFKKKIQK*
Ga0150985_1018051641	3300012212	Avena Fatua Rhizosphere	ALFNYKMNDLFGLYLSYYQINSFEFIFIGLLLLVASLICVNLNKFNRNIKSNNYYELITLFDFFEEFVKFNFMRKQNLVDQEISSSSTRMFKKKVSK*
Ga0150985_1062447191	3300012212	Avena Fatua Rhizosphere	MNDLFGLYVSYYIFNSFEFIILGILLLLASVVCVNLNKFNKNIKANNYYELVTLFDFFDDFVKFIFMRKQNLVDQEISSSSTRVFKKKVSK*
Ga0150985_1065478932	3300012212	Avena Fatua Rhizosphere	FNLKMNDLFGLFISYYYVNSFEFIIVGLLLLFVSLVCVNLNKFSKNFKLNNYYSLLTLFDFFSDFIHFFFLRKQNLVDQTNHPAATRVFKKKTKK*
Ga0150985_1083200012	3300012212	Avena Fatua Rhizosphere	MNDLFSLYISYYVINSFEFILIGILLLIGSIVCVNINKFNKNLKSNNYYDLLTIFDFFNDFVKYLFMRKQNLVDQTIHPSATKIFKKKTIK*
Ga0150985_1089829632	3300012212	Avena Fatua Rhizosphere	MNDLFGLYLSYYSLNSFEFLLIGFILLIGSVVCVNLNKLNKSLKSNNYFELLVIFDFFNDFIKFFFMRKQNLNDQTVKTSSTKNFKKKIIK*
Ga0150985_1139769741	3300012212	Avena Fatua Rhizosphere	MNDFFSLYLSYYGINSVELVLIGLLLLFASLVCVNLNRFSKNFKLNNYYNLFTIFDFFSDFINFFFLRKQNLVDQENHQASTRTFKKKVSK*
Ga0150985_1141555912	3300012212	Avena Fatua Rhizosphere	MNDLFGLYISYYILNSFEFILIGILLLVGSIVCVNLNKFNRNLKSNNYYDLLTIFDFFSDFIKFFFMKKQNLVDQGIHISATKIFKKKVVK*
Ga0150985_1146147861	3300012212	Avena Fatua Rhizosphere	MNDFFSLYLSYYGINSFEFICVGLLLLIVSLVCVNLNRFNKNFKLNNYYNLFTIFDFFNDFINFFFLRKQNLVDQEINPASTRIFKKKVNK*
Ga0150985_1158038192	3300012212	Avena Fatua Rhizosphere	MNDLVGLYISYYYFNSFEFILIGFILLIGSVVCVNLNKLNRNLKSNNYYELFVLFDFFNDFVKFFFMRKQNLLDQMIKPSSTKNFKKKTSK*
Ga0150985_1165155702	3300012212	Avena Fatua Rhizosphere	MNDLFSLYISYYIINSFEFILIGILLLIGSIVCVNINKFNKNLKSNNYYDLLTIFDFFNDFVKYLFMRKQNLVDQTIHPSATKIFKKKIIK*
Ga0150985_1165766372	3300012212	Avena Fatua Rhizosphere	INSFEFILIGYLLLAVSLVCVNLNKFNKNFKLNNYYELFTLFDFYNDFVKFFFMRKQNLVDQEIKPASTKIFNKKNFKVKPQ*
Ga0150985_1191238901	3300012212	Avena Fatua Rhizosphere	DLFGIYISYYIINSFEFIIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFVFMRKQNLVDQEISSTSTRVFKKKVTK*
Ga0150985_1210302112	3300012212	Avena Fatua Rhizosphere	FIIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFIFMRKQNLVDQEISSPSTRVFKKKVTK*
Ga0150985_1218992311	3300012212	Avena Fatua Rhizosphere	SYLIWENYYEALYNLKMNDLFGLFLSYYYINSFEFLIVGLLLLFVSLVCVNLNRFSKNFKLNNYYSLFTLFDFFNDFINFFFLRKQNLVDQTNHVAATRVFKKKTKK*
Ga0150984_1005327452	3300012469	Avena Fatua Rhizosphere	MNDLFSLFISYYYINSFEFILIGLLLLFVSLVCVNLNKFNKNFKLNNYYNLFTLFDFFNDFINFFFLRKQNLVDQEIHPASTRIFKKKIKK*
Ga0150984_1014095862	3300012469	Avena Fatua Rhizosphere	MNDLFGLYISYYMLNSFEFILIGVILLVGSIVCVNLNKFNRNIKANNYYDLLVLFDFFDDFVKFLFLRKQNLVDQSIHPSSTRIFKKKVTK*
Ga0150984_1033594551	3300012469	Avena Fatua Rhizosphere	MNDLFGLYIGYYVLNSFEFILVGVLLLVGSIVCVNINKFNKNLKSNNYYDLLTIFDFFDDFVKFLFMRKQNLVDQTVHPSSTRIFKKKVNK*
Ga0150984_1043403231	3300012469	Avena Fatua Rhizosphere	INSFEFIIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFIFMRKQNLVDQEISSPSTRVFKKKVTK*
Ga0150984_1064566931	3300012469	Avena Fatua Rhizosphere	NNKMNDLFGIYLSYYYINSFEFIVIGLLLLIASVVCVNLNKFNRNIKANNYYDLISLFDFFDDFVKFFFMRKQNLVDQATSSTSTKMFKKKVTK*
Ga0150984_1072693583	3300012469	Avena Fatua Rhizosphere	YLLNSFEFILIGILLLIGSIVCVNLNKFNKNLKSNNYYDLLTIFDFFDDFVKFIFMRKQNLVDQEISSSSTRVFKKKVSK*
Ga0150984_1097292442	3300012469	Avena Fatua Rhizosphere	YVINSFEFILIGYLLLAVSLVCVNLNKFNKNFKLNNYYELFTLFDFYNDFVKFFFMRKQNLVDQEIKPASTKIFNKKNFKVKPQ*
Ga0150984_1100459081	3300012469	Avena Fatua Rhizosphere	MYGLYLSYYKFNSFEFIFIGLILLIGSLLCVNINKFNRMNKLHSYHDLFLVFDFFKDFVKFIFMRKQNLVDQEN
Ga0150984_1114822611	3300012469	Avena Fatua Rhizosphere	MNDLFGIYLSYYLINSFEFIIIGLLLLIASVVCVNLNKFNRNIKANNYYELITLFDFFDDFVKFIFMRKQNLVDQAISSTSTKMFKKKVTK*
Ga0150984_1139707582	3300012469	Avena Fatua Rhizosphere	MNDLFGLYLSYYICNSFEFIMVGLLLLFASVVCVNLNKFNRNYKVNNYYDLLTLFDFFNDFVKFFFLRKQNLVDQEIHQAATKVFKKKISK*
Ga0150984_1141685391	3300012469	Avena Fatua Rhizosphere	MNDLFGLYIGYYVLNSFEFIMIGVLLLIASIICVNLNKFNRNIKSNNYYDLLVLFDFFDDFVKYSFMRKQNLVDQAIRISSSRTFKKKVSK*
Ga0150984_1148239041	3300012469	Avena Fatua Rhizosphere	RVELNITYLWDDYYESLNNKINDLFSLYLSYYILNSFEFILIGILLLIASIVCVNLNKFNKNLRINNYYDLLSLFDFFNDFIKFLFLRKQNLTDQTLHPASTRMFKKKISK
Ga0150984_1172198292	3300012469	Avena Fatua Rhizosphere	FEFIMIGVLLLIASIICVNLNKFNRNIKANNYYDLLVLFDFFDDFIKYSFMRKQNLIDQAIKFSSTRIFKKKVSK*
Ga0150984_1181240863	3300012469	Avena Fatua Rhizosphere	MNDLFGLYISYYILNSFEFIMIGVLLLIASIICVNLNKFNRNIKANNYYDLLVLFDFFDDFIKYSFMRKQNLIDQAIKFSSTRIFKKKVSK*
Ga0150984_1183280041	3300012469	Avena Fatua Rhizosphere	ILNSFEFIMIGVLLLIASIVCVNLNKFNRNIKANNYYDLLVLFDFFDDFVKYSFMRKQNLVDQAIRISSTRIFKKKISK*
Ga0150984_1190356462	3300012469	Avena Fatua Rhizosphere	IGYYVLNSFEFILVGILLLVGSIVCVNINKFNKNLKSNNYYDLLTIFDFFDDFVKFLFMRKQNLVDQTIHPSSTRIFKKKVNK*
Ga0150984_1192449262	3300012469	Avena Fatua Rhizosphere	FCFPFNLEFVYSNELNAFILWDNYYEALFNLKMNDLFGLFISYYYVNSFEFIIVGLLLLFVSLVCVNLNKFSKNFKLNNYYSLLTLFDFFSDFIHFFFLRKQNLVDQTNHPAATRVFKKKTKK*
Ga0150984_1199616012	3300012469	Avena Fatua Rhizosphere	FIMIGVLLLIASIICVNLNKFNRNIKANNYYDLLVLFDFFDDFIKYSFMRKQNLIDQAVKFSSTRIFKKKVSK*
Ga0150984_1214702822	3300012469	Avena Fatua Rhizosphere	FNYKMNDLFGLYLSYYQINSFEFIFIGLLLLVASLICVNLNKFNRNIKSNNYYELITLFDFFEEFVKFNFMRKQNLVDQEISSSSTRMFKKKIQK*
Ga0150984_1217023101	3300012469	Avena Fatua Rhizosphere	LFGLYLGYYILNSFEFILIGVLLLIASIVCVNLNKFNRNIKSNNYYDLLVLFDFFDDFIKYSFMRKQNLVDQAIHISSSRVFKKKISK*
Ga0150984_1220219732	3300012469	Avena Fatua Rhizosphere	YYYINSFEFVTIGLLLLFISLVCVNLNKFNKNFKLNNYYNLFTLFDFFNDFINFFFLRKQNLVDQEIHPASTRIFKKKQKK*
Ga0160490_1003714	3300012822	Soil	VYGLYNSYYILNSFEFIMVGLLLLFASIVCVNLSKFNKNIKINNYYELLTLYDFFNDFVNFLFMRKQNLNNQTIANVSTRIFKKKTNK*
Ga0164274_1049537	3300013051	Soil	MNDVYGLYTSYYILNSFEFLMVGLLLLFASIVCVNLSKFNRNIKLNNYYELLTLYDFFNDFVNFLFMRKQNLNNQTIATVSTRIFKKKINK*
Ga0181463_10028683	3300013872	Clean Room	MNDLFGLFISYYYVNSFEFLVVGLLLLFVSLVCVNLNKFSKSFKLNNYYSLLTLFDFFSDFISFFFLRKQNLVDQTNHVAATRIFKKKAKK*
Ga0182195_11051841	3300017414	Switchgrass Phyllosphere	NFINEELNIFYYXDDYYEALFNNKMNDLFGLYISYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0182213_12558111	3300017421	Switchgrass Phyllosphere	MNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKK
Ga0182198_10333023	3300017445	Switchgrass Phyllosphere	MNDLFGIYISYYLINSFEFMVIGLLLLIASLVSVNLNKFNRTIKANNYYDLLTLFDFFDDFVKFIFMRKQNLVDQEISSTSTKMFKKKVTK
Ga0182212_10855311	3300017691	Switchgrass Phyllosphere	FILIGFLLLIASVVCVNLNKFNRNIKSNNYYELVTLFDFFDDLVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0182210_10757371	3300017692	Switchgrass Phyllosphere	IPIELNNTFLWDDYYEALWNNKRNDLFGLYLSYYIINRFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0197907_101101521	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	YEALFNNRMNDFFSLYLSYYGINSFEFISVGLLLLIVSLVCVNLNRFNKNFKLNNYYNLFTIFDFFNDFINFFFLRKQNLVDQEINLTSTRVFKKKINK
Ga0197907_112810741	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	DLFGLYIGYYILNSFEFIMIGVLLLIASIICVNLNKFNRNIKSNNYYDLLVLFDFFDDFVKYSFMRKQNLVDQAIHISSSRTFKKKVSK
Ga0197907_114757022	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	FKMNDLFGLFISYYYVNSFEFTIVGLLLLFVSLVCVNLNKFNKNFKLNNYYSLFTLFDFFNDFINFFFLRKQNLVDQTNHVAATRVFKKKANK
Ga0206351_108343551	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	MNDLFGLYIGYYILNSFEFIMIGVLLLIASIICVNLNKFNRNIKSNNYYDLLVLFDFFDDFIKYSFMRKQNLVDQAIHISSSRTFKKKVSK
Ga0206351_108678712	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	YGLYNSYYILNSFEFIMIGLLLLFASIICVNLSKFNKNVKINNYYELLTLYDFFNDFVNFLFLRKQNLNSQTIANASTRVFKKKIKK
Ga0206352_102915562	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MNDLFGLYISYYILNSFEFILIGILLLIGSIVCVNLNKFNRNLKSNNYYDLLTIFDFFNDFIKFFFMKKQNLVDQGIHISATKIFKKKITK
Ga0206350_109008362	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MNDFFGLYLSYYLINSFEFILVGFLLLLASLVCVNLNKFNKNFKLNNYYNLFTLFDFFSDFINFFFLRKQNLVDQENHSASTRVFKKKVKK
Ga0206354_100923451	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	SLFNNRMNDFFGLYLSYYLINSFEFILVGFLLLLASLVCVNLNKFNKNFKLNNYYNLFTLFDFFSDFINFFFLRKQNLVDQENHSASTRVFKKKVKK
Ga0154015_12884532	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MNDVYGLYNSYYILNSFEFIMIGLLLLFASIICVNLSKFNKNVKINNYYELLTLYDFFNDFVNFLFMRKQNLTNQTIANVSTRIFKKKVNK
Ga0224712_102664572	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	NLEFVYINELNSFILXENYYEALFNFKMNDLFGLFISYYYVNSFEFTIVGLLLLFVSLVCVNLNKFNKNFKLNNYYSLFTLFDFFNDFINFFFLRKQNLVDQTNHVAATRVFKKKTNK
Ga0207647_105139152	3300025904	Corn Rhizosphere	MNDLFGLYIGYYLLNSFEFILIGILLLIGSIVCVNINKFNKNLKSNNYYDLLTIFDFFDDFVKYLFMRKQNLVDQTIHPSSTRIFKKKINK
Ga0265797_106515011	3300028585	Plant Litter	YYYINSFEFIVVGLLLLFVSLVCVNLNKFSKSFKLNNYYSLLTLFDFFSDFIHFFFLRKQNLVDQTNHPAATRVFKKKIKK
Ga0315869_1090213	3300030828	Plant Litter	MNDVYGLYNSYYILNSFEFIMVGLLLLFASIVCVNLSKFNKNLKINNYYELLTLYDFFNDFVNFLFMRKQNLTNQTIANVSTRVFKKKINK
Ga0315869_1140823	3300030828	Plant Litter	NNKMNDLFGIYLSYYSINSFEFIIIGLLLLIASLICVNLNKFNKNIKSNNYYDLITLFDFFEDFVKFTFLRKQNLVDQEISSTSTRMFKKKVTK
Ga0315869_1235332	3300030828	Plant Litter	SYYVINSFEFIVIGLLLLIASVVSVNLNKFNRNIKANNYYELITLFDFFEDFVKFVFMRKQNLVDQAISSTSTRMFKKKVTK
Ga0315855_1304272	3300030864	Plant Litter	FEFIIIGLLLLIASVVCVNLNKFNRNIKANNYYELITLFDFFDDFVKFIFMRKQNLVDQAISSTSTKMFKKKVTK
Ga0315821_1133031	3300031066	Plant Litter	YYEALNNSKMNDLFGIYISYYVINSFEFIVIGLLLLIASVVSVNLNKFNRNIKANNYYELITLFDFFEDFVKFVFMRKQNLVDQAISSTSTRMFKKKVTK
Ga0315821_1161841	3300031066	Plant Litter	LSYYSINSFEFIIIGLLLLIASLICVNLNKFNKNIKSNNYYDLITLFDFFEDFVKFTFLRKQNLVDQEISSTSTRMFKKKVTK
Ga0315829_1315482	3300031080	Plant Litter	VINSFEFIIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFIFMRKQNLVDQEISSPSTRVFKKKVTK
Ga0315823_1074262	3300031105	Plant Litter	LNVINFWDDYYEALNNFRMNDLFGLYISYYILNSFEFIMIGVLLLIASIICVNLNKFNRNIKANNYYDLLVLFDFFDDFIKYSFMRKQNLIDQAIKFSSTRIFKKKIIK
Ga0315814_1186191	3300031130	Plant Litter	NSFEFIIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFIFMRKQNLVDQEISSPSTRVFKKKVTK
Ga0315847_1201722	3300031135	Plant Litter	FNNIFLWDDYYEALNNSKMNDLFGIYISYYVINSFEFIVIGLLLLIASVVSVNLNKFNRNIKANNYYELITLFDFFEDFVKFVFMRKQNLVDQAISSTSTRMFKKKVTK
Ga0315832_1270502	3300031428	Plant Litter	YYEALNNFRMNDLFGLYISYYILNSFEFIMIGVLLLIASIICVNLNKFNRNIKANNYYDLLVLFDFFDDFIKYSFMRKQNLIDQAIKFSSTRIFKKKIIK
Ga0315836_1255471	3300031458	Plant Litter	DDYYEALNNSKMNDLFGIYISYYVINSFEFIVIGLLLLIASVVSVNLNKFNRNIKANNYYELITLFDFFEDFVKFVFMRKQNLVDQAISSTSTRMFKKKVTK
Ga0315812_1262012	3300031461	Plant Litter	FIVIGLLLLIASVVSVNLNKFNRNIKANNYYELITLFDFFEDFVKFVFMRKQNLVDQAISSTSTRMFKKKVTK
Ga0214503_11575032	3300032466	Switchgrass Phyllosphere	DLFGLFLSYYFINSFEFILIGFLLLIASLLLVNLNKFNRNIKSNNYYDLLTLFDFFEDFVKFVFLRKQNLVDQEISSTSTRMFKKKINK
Ga0214503_11618112	3300032466	Switchgrass Phyllosphere	SYYYINSFEFITIGVILLIASLISVNLNKFNRILKSNNYLDFLTIFDFFNDFSKFLFLKKQNLVDQAISSTSTRIFKKKINK
Ga0214503_11707581	3300032466	Switchgrass Phyllosphere	FGLYISYYYVNSFEFLIVGLLLLIASLVSVNLNKFNRNIKSNNYYELTSLFDFFDDFIKFIFMRKQNLVDQAISSTSTRVFKKKVSK
Ga0214503_11887372	3300032466	Switchgrass Phyllosphere	LFGIYISYYLINSFEFMVIGLLLLIASLVSVNLNKFNRTIKANNYYDLLTLFDFFDDFVKFIFMRKQNLVDQEISSTSTKMFKKKVTK
Ga0214502_11361861	3300032514	Switchgrass Phyllosphere	FYNPIELNFNLLXDDYYEALFNNKMNVLFGLFLSYYFINSFEFILIGFLLLIASLLLVNLNKFNRNIKSNNYYDLLTLFDFFEDFVKFVFLRKQNLVDQEISSTSTRMFKKKINK
Ga0214502_11775053	3300032514	Switchgrass Phyllosphere	NNNRMNDVYVLFISYYVINTLEFISIGFLLLIASVVCVNLNKFNRNIKSNNYYELTTLFDIFNDFVKFVFMRKQNLSEQNMHEAEIRIFKKKFSKGEVKLDX
Ga0214502_12429461	3300032514	Switchgrass Phyllosphere	SFEFLILGLLLLIASVIAVNLNKFNRNIKSNNYYDLLTIFDFFEDFTKFLFLRKQNLMDQTISSTSTRVFKKKIKK
Ga0316222_11075613	3300032561	Freshwater	MNDIYGLYNSYYILNSFEFIMIGLLLLFASIICVNLSKFNKNVKLNNYYELLTLYDFFNDFVNFLFMRKQNLNNQTIANVSTRIFKKKINK
Ga0214500_10814591	3300032589	Switchgrass Phyllosphere	NDLFGLYISYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0214500_10954831	3300032589	Switchgrass Phyllosphere	YYEALNNNKMNDLFGIYISYYLINSFEFMVIGLLLLIASLVSVNLNKFNRTIKANNYYDLLTLFDFFDDFVKFIFMRKQNLVDQEISSTSTKMFKKKVTK
Ga0214500_11256062	3300032589	Switchgrass Phyllosphere	DYYEALWNNKMNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0214500_11367161	3300032589	Switchgrass Phyllosphere	VSYYLINSFEFIIIGLLLLIASVVCVNLNKFNRNIKANNYYDLLTLFDFFEDFVKFVFMRKQNLVDQNISSTSTKMFKKKITK
Ga0321338_10197053	3300032593	Switchgrass Phyllosphere	MNDVYVLFVSYYCLNSLEFILIGFLLLIASVVCVNLNKFNRNIKSNNYYELTTLFDIFNDFVKFVFMRKQNLSEQNIHEAEIRIFKKKFSKGKVEDEQV
Ga0321338_11150693	3300032593	Switchgrass Phyllosphere	MNDLFGLYLSYYYINSFEFLILGLLLLIASVIAVNLNKFNRNIKSNNYYDLLTIFDFFEDFTKFLFLRKQNLMDQTISSTSTRVFKKKIKK
Ga0321338_12012252	3300032593	Switchgrass Phyllosphere	KMNDLFGLFLSYYYINSLEFIFIGLLLLFVSLVCVNLNRFNKNFKLNNYYNLFTLFDFFNDFINFFFLRKQNLINQEIQLAATKVFKKKHIK
Ga0321338_12043082	3300032593	Switchgrass Phyllosphere	NDLFGIYISYYLINSFEFMVIGLLLLIASLVSVNLNKFNRTIKANNYYDLLTLFDFFDDFVKFIFMRKQNLVDQEISSTSTKMFKKKVTK
Ga0214501_12011281	3300032625	Switchgrass Phyllosphere	DDYYEALFNNKMNDLFGLYISYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0214501_12034291	3300032625	Switchgrass Phyllosphere	FITIGVILLIASLISVNLNKFNRILKSNNYLDFLTIFDFFNDFSKFLFLKKQNLVDQAISSTSTRIFKKKINK
Ga0314742_10738981	3300032781	Switchgrass Phyllosphere	YYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELISLFDFFDDFVKFIFMRKQNLVDQEISSTSTRMFKKKVSK
Ga0314750_10437533	3300032914	Switchgrass Phyllosphere	ENFINEELNIFYYXDDYYEALFNNKMNDLFGLYISYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0314750_11056191	3300032914	Switchgrass Phyllosphere	KMNDLFGIYISYYLINSFEFIVIGLLLLIASVVSVNLNKFNRNIKANNYYDLLTLFDFFEDFVKFIFMRKQNLVDQEISSSSTRVFKKKVTK
Ga0314749_10857081	3300032915	Switchgrass Phyllosphere	LSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314734_10588403	3300032916	Switchgrass Phyllosphere	FVIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFIFMRKQNLVDQEISSSSTRVFKKKVTK
Ga0314752_10710462	3300032976	Switchgrass Phyllosphere	DLFGIYISYYLINSFEFMVIGLLLLIASLVSVNLNKFNRTIKANNYYDLLTLFDFFDDFVKFIFMRKQNLVDQEISSTSTKMFKKKVTK
Ga0314752_10712842	3300032976	Switchgrass Phyllosphere	LXENYYEALFNLKMNDLFGLFISYYYVNSFEFTIVGLLLLFVSLVCVNLNKFNKNFKLNNYYSLFTLFDFFNDFINFFFLRKQNLVDQTNHVAATRVFKKKTNK
Ga0314768_11878023	3300033523	Switchgrass Phyllosphere	FGLFLSYYFINSFEFILIGFLLLIASLLLVNLNKFNRNIKSNNYYDLLTLFDFFEDFVKFVFLRKQNLVDQEISSTSTRMFKKKINK
Ga0314768_12048933	3300033523	Switchgrass Phyllosphere	YIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314768_12148192	3300033523	Switchgrass Phyllosphere	LSYYYINSFEFLILGLLLLIASVIAVNLNKFNRNIKSNNYYDLLTIFDFFEDFTKFLFLRKQNLMDQTISSTSTRVFKKKIKK
Ga0314768_12528342	3300033523	Switchgrass Phyllosphere	FYIPIELNNTFLWDDYYEALWNNKMNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314758_11188662	3300033525	Switchgrass Phyllosphere	MNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314758_11912571	3300033525	Switchgrass Phyllosphere	MNDVYVLFVSYYCLNSLEFILIGFLLLIASVVCVNLNKFNRNIKSNNYYELITLFDIFNDFVKFVFMRKQNLSE
Ga0314761_10843261	3300033526	Switchgrass Phyllosphere	KMNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314760_11560142	3300033530	Switchgrass Phyllosphere	YYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0314767_11485971	3300033532	Switchgrass Phyllosphere	MNDLFGLYISYYYVNSFEFLIVGLLLLIASLVSVNLNKFNRNIKSNNYYELTSLFDFFDDFIKFIFMRKQNLVDQAISSTSTRVFKKKVSK
Ga0314770_12426652	3300033533	Switchgrass Phyllosphere	SYYYVNSFEFLIVGLLLLIASLVSVNLNKFNRNIKSNNYYELTSLFDFFDDFIKFIFMRKQNLVDQAISSTSTRVFKKKVSK
Ga0314770_12607381	3300033533	Switchgrass Phyllosphere	DLFGLYISYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0314757_10887401	3300033534	Switchgrass Phyllosphere	NDLFGLFLSYYFINSFEFILIGFLLLIASLLLVNLNKFNRNIKSNNYYDLLTLFDFFEDFVKFVFLRKQNLVDQEISSTSTRMFKKKINK
Ga0314757_11191102	3300033534	Switchgrass Phyllosphere	KMNDLFGIYISYYLINSFEFIIIGLLLLIASVVSVNLNKFNRNIKANNYYDLITLFDFFEDFVKFIFMRKQNLVDQEISSSSTRVFKKKVTK
Ga0314759_10731693	3300033535	Switchgrass Phyllosphere	MNDLFGLFLSYYFINSFEFILIGFLLLIASLLLVNLNKFNRNIKSNNYYDLLTLFDFFEDFVKFVFLRKQNLVDQEISSTSTRMFKKKINK
Ga0314759_12337041	3300033535	Switchgrass Phyllosphere	NKMNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKANNYYDLLTLFDFFEDFVKFIFMRKQNLVDQKISSTSTKMFKKKVTK
Ga0314766_11796661	3300033537	Switchgrass Phyllosphere	DDYYEALFNNKMNDLFGLYISYYYVNSFEFLIVGLLLLIASLVSVNLNKFNRNIKSNNYYELTSLFDFFDDFIKFIFMRKQNLVDQAISSTSTRVFKKKVSK
Ga0314766_11893612	3300033537	Switchgrass Phyllosphere	DYYEALXNNKMNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314766_11925721	3300033537	Switchgrass Phyllosphere	YYEALFNNKMNDLFGLYISYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0314766_12179633	3300033537	Switchgrass Phyllosphere	ILIGFLLLIASVVCVNLNKFNRNIKSNNYYELTTLFDIFNDFVKFVFMRKQNLSEQNIHEAEIRIFKKKFSKGKVEDEQV
Ga0314766_12820601	3300033537	Switchgrass Phyllosphere	SLFSYYLINSFEFIVIGLLLLIASVVSVNLNKFNRNIKANNYYDLLTLFDFFEDFVKFIFMRKQNLVDQKISSTSTKMFKKKVTK
Ga0314769_13311061	3300033542	Switchgrass Phyllosphere	MNDLFGLYLSYYIINSFEFLIVGLLLLIASVMCVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314765_11473952	3300033543	Switchgrass Phyllosphere	XDDYYEALWNNKMNDLFGLYLSYYIINSFEFLIVGLLLLIASVICVNLNKFNRNIKSNNYYELVSLFDFFDDFVKFIFMRKQNLVDQEISSSSTRMFKKKVSK
Ga0314765_11633081	3300033543	Switchgrass Phyllosphere	SYYYINSFEFLLIGLILLIASVIAVNLNKFNRNIKSNNYYELLTMFDFFDDFLKFLFLRKQNLMDQTLSSTSTRMFKKKVSK
Ga0314765_11994823	3300033543	Switchgrass Phyllosphere	FEFLILGLLLLIASVIAVNLNKFNRNIKSNNYYDLLTIFDFFEDFTKFLFLRKQNLMDQTISSTSTRVFKKKIKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071840

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences