NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F071882

Metagenome / Metatranscriptome Family F071882

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F071882
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 44 residues
Representative Sequence VAELGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Number of Associated Samples 90
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.83 %
% of genes near scaffold ends (potentially truncated) 91.74 %
% of genes from short scaffolds (< 2000 bps) 89.26 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (84.298 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(15.703 % of family members)
Environment Ontology (ENVO) Unclassified
(55.372 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(42.149 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 8.70%    Coil/Unstructured: 91.30%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF02782FGGY_C 0.83
PF16277DUF4926 0.83
PF01381HTH_3 0.83
PF02452PemK_toxin 0.83
PF04055Radical_SAM 0.83
PF01527HTH_Tnp_1 0.83
PF03625DUF302 0.83
PF11848DUF3368 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG2337mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin moduleDefense mechanisms [V] 0.83
COG3439Uncharacterized conserved protein, DUF302 familyFunction unknown [S] 0.83


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A84.30 %
All OrganismsrootAll Organisms15.70 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006102|Ga0075015_100607015Not Available641Open in IMG/M
3300009519|Ga0116108_1187844Not Available608Open in IMG/M
3300009623|Ga0116133_1227388Not Available507Open in IMG/M
3300009624|Ga0116105_1214033Not Available536Open in IMG/M
3300009629|Ga0116119_1100140Not Available728Open in IMG/M
3300009636|Ga0116112_1158266Not Available631Open in IMG/M
3300009665|Ga0116135_1095344Not Available1073Open in IMG/M
3300009759|Ga0116101_1079321Not Available742Open in IMG/M
3300009759|Ga0116101_1195292Not Available514Open in IMG/M
3300009764|Ga0116134_1290546Not Available562Open in IMG/M
3300009839|Ga0116223_10609881Not Available630Open in IMG/M
3300009839|Ga0116223_10702578Not Available580Open in IMG/M
3300010379|Ga0136449_102835791Not Available683Open in IMG/M
3300014151|Ga0181539_1299739Not Available590Open in IMG/M
3300014156|Ga0181518_10136231Not Available1330Open in IMG/M
3300014158|Ga0181521_10042666All Organisms → cellular organisms → Bacteria → Acidobacteria3240Open in IMG/M
3300014158|Ga0181521_10563518Not Available538Open in IMG/M
3300014160|Ga0181517_10516870Not Available603Open in IMG/M
3300014162|Ga0181538_10565428Not Available595Open in IMG/M
3300014162|Ga0181538_10656226Not Available545Open in IMG/M
3300014164|Ga0181532_10422387Not Available738Open in IMG/M
3300014164|Ga0181532_10512338Not Available657Open in IMG/M
3300014164|Ga0181532_10749830Not Available525Open in IMG/M
3300014165|Ga0181523_10417163Not Available746Open in IMG/M
3300014165|Ga0181523_10531685Not Available648Open in IMG/M
3300014165|Ga0181523_10604128Not Available602Open in IMG/M
3300014200|Ga0181526_10508069Not Available763Open in IMG/M
3300014200|Ga0181526_10641345Not Available670Open in IMG/M
3300014491|Ga0182014_10096422All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter1795Open in IMG/M
3300014492|Ga0182013_10625021Not Available546Open in IMG/M
3300014493|Ga0182016_10055891All Organisms → cellular organisms → Bacteria3033Open in IMG/M
3300014493|Ga0182016_10805568Not Available522Open in IMG/M
3300014494|Ga0182017_10873295Not Available541Open in IMG/M
3300014496|Ga0182011_10998244Not Available519Open in IMG/M
3300014501|Ga0182024_10537763Not Available1477Open in IMG/M
3300014502|Ga0182021_10906625Not Available1060Open in IMG/M
3300014502|Ga0182021_13611447Not Available514Open in IMG/M
3300014655|Ga0181516_10556039Not Available590Open in IMG/M
3300014839|Ga0182027_10638391Not Available1138Open in IMG/M
3300017929|Ga0187849_1285779Not Available620Open in IMG/M
3300017931|Ga0187877_1276536Not Available644Open in IMG/M
3300017932|Ga0187814_10257750Not Available662Open in IMG/M
3300017934|Ga0187803_10037037All Organisms → cellular organisms → Bacteria1938Open in IMG/M
3300017943|Ga0187819_10585693Not Available633Open in IMG/M
3300017946|Ga0187879_10309582Not Available877Open in IMG/M
3300017970|Ga0187783_10322071Not Available1126Open in IMG/M
3300017972|Ga0187781_10583385Not Available805Open in IMG/M
3300017973|Ga0187780_11200326Not Available556Open in IMG/M
3300017988|Ga0181520_10593496Not Available770Open in IMG/M
3300017988|Ga0181520_11054698Not Available536Open in IMG/M
3300018009|Ga0187884_10435552Not Available527Open in IMG/M
3300018014|Ga0187860_1031279Not Available2894Open in IMG/M
3300018016|Ga0187880_1031398All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA43011Open in IMG/M
3300018024|Ga0187881_10232060Not Available777Open in IMG/M
3300018035|Ga0187875_10379412Not Available757Open in IMG/M
3300018037|Ga0187883_10608763Not Available567Open in IMG/M
3300018038|Ga0187855_10761284Not Available564Open in IMG/M
3300018043|Ga0187887_10069198All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA42143Open in IMG/M
3300018043|Ga0187887_10331444Not Available898Open in IMG/M
3300018043|Ga0187887_10535598Not Available691Open in IMG/M
3300018043|Ga0187887_10574555Not Available665Open in IMG/M
3300018044|Ga0187890_10412258Not Available758Open in IMG/M
3300018046|Ga0187851_10542929Not Available659Open in IMG/M
3300018047|Ga0187859_10661059Not Available592Open in IMG/M
3300018047|Ga0187859_10842378Not Available528Open in IMG/M
3300018062|Ga0187784_11028256Not Available654Open in IMG/M
3300019082|Ga0187852_1381435Not Available552Open in IMG/M
3300019785|Ga0182022_1216728All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41828Open in IMG/M
3300019785|Ga0182022_1275385All Organisms → cellular organisms → Bacteria3234Open in IMG/M
3300019787|Ga0182031_1562707Not Available1312Open in IMG/M
3300019788|Ga0182028_1156541All Organisms → Viruses → Predicted Viral1481Open in IMG/M
3300019788|Ga0182028_1167189Not Available1203Open in IMG/M
3300019788|Ga0182028_1499443Not Available1522Open in IMG/M
3300021861|Ga0213853_11252832Not Available1185Open in IMG/M
3300023068|Ga0224554_1144034Not Available520Open in IMG/M
3300023075|Ga0224520_1153031Not Available503Open in IMG/M
3300025463|Ga0208193_1013375All Organisms → cellular organisms → Bacteria → Proteobacteria2434Open in IMG/M
3300025506|Ga0208937_1065214Not Available838Open in IMG/M
3300025612|Ga0208691_1113429Not Available610Open in IMG/M
3300027905|Ga0209415_10882538Not Available611Open in IMG/M
3300029883|Ga0311327_10213510Not Available1310Open in IMG/M
3300029911|Ga0311361_10850647Not Available796Open in IMG/M
3300029913|Ga0311362_10747891Not Available823Open in IMG/M
3300029915|Ga0311358_10854640Not Available645Open in IMG/M
3300029945|Ga0311330_10598003Not Available868Open in IMG/M
3300029954|Ga0311331_10977804Not Available738Open in IMG/M
3300029955|Ga0311342_11314490Not Available513Open in IMG/M
3300030618|Ga0311354_10948938Not Available798Open in IMG/M
3300030688|Ga0311345_10071831All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA44151Open in IMG/M
3300030838|Ga0311335_10428454Not Available913Open in IMG/M
3300031234|Ga0302325_12489780Not Available618Open in IMG/M
3300031236|Ga0302324_102935320Not Available569Open in IMG/M
3300031242|Ga0265329_10122413Not Available835Open in IMG/M
3300031249|Ga0265339_10529576Not Available543Open in IMG/M
3300031524|Ga0302320_10193186All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA42938Open in IMG/M
3300031524|Ga0302320_10661211Not Available1199Open in IMG/M
3300031524|Ga0302320_10739883All Organisms → Viruses → Predicted Viral1105Open in IMG/M
3300031525|Ga0302326_11092480Not Available1109Open in IMG/M
3300031708|Ga0310686_106508893Not Available505Open in IMG/M
3300031711|Ga0265314_10269057Not Available969Open in IMG/M
3300032770|Ga0335085_10288039All Organisms → cellular organisms → Bacteria1953Open in IMG/M
3300032805|Ga0335078_10081910All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA44699Open in IMG/M
3300032805|Ga0335078_11140851Not Available907Open in IMG/M
3300032805|Ga0335078_11402872Not Available789Open in IMG/M
3300032828|Ga0335080_10844176Not Available943Open in IMG/M
3300032828|Ga0335080_10997959Not Available853Open in IMG/M
3300032828|Ga0335080_12174592Not Available534Open in IMG/M
3300032892|Ga0335081_10653566Not Available1285Open in IMG/M
3300032892|Ga0335081_10881642Not Available1058Open in IMG/M
3300032892|Ga0335081_11243228Not Available845Open in IMG/M
3300032892|Ga0335081_11755174Not Available673Open in IMG/M
3300032893|Ga0335069_11965750Not Available617Open in IMG/M
3300032897|Ga0335071_10147369All Organisms → cellular organisms → Bacteria2307Open in IMG/M
3300032897|Ga0335071_10358249Not Available1412Open in IMG/M
3300032955|Ga0335076_10069003All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA43482Open in IMG/M
3300033402|Ga0326728_10008566All Organisms → cellular organisms → Bacteria25307Open in IMG/M
3300033402|Ga0326728_10846818Not Available657Open in IMG/M
3300033405|Ga0326727_11007981Not Available606Open in IMG/M
3300033823|Ga0334837_047047All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300033823|Ga0334837_051004Not Available1062Open in IMG/M
3300033977|Ga0314861_0532955Not Available501Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland15.70%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog14.88%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil12.40%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland9.92%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog9.09%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen8.26%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog4.13%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.31%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.31%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil3.31%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa3.31%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.48%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil2.48%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.48%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.83%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.83%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.83%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.83%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.83%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300009636Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014160Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014494Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaGEnvironmentalOpen in IMG/M
3300014496Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018014Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40EnvironmentalOpen in IMG/M
3300018016Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019082Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40EnvironmentalOpen in IMG/M
3300019785Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021861Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023068Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24EnvironmentalOpen in IMG/M
3300023075Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T-25EnvironmentalOpen in IMG/M
3300025463Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025506Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025612Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030688II_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300030838I_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031242Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaGHost-AssociatedOpen in IMG/M
3300031249Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaGHost-AssociatedOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033823Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34EnvironmentalOpen in IMG/M
3300033977Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0075015_10060701523300006102WatershedsGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0116108_118784413300009519PeatlandNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0116133_122738813300009623PeatlandNTDGIVTLQITGVQLYDPTNGMVTMTVMTPQTGICQ*
Ga0116105_121403313300009624PeatlandMTIQQMGFNVVELSNTDGIATLQVTGVQLYNATNGLVTMSVTSPQGGICQ*
Ga0116119_110014023300009629PeatlandFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0116112_115826623300009636PeatlandMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0116135_109534413300009665PeatlandGIATMQVTGVQLYDPTNGLVTMSITTPQNGICQAAA*
Ga0116101_107932113300009759PeatlandTDGIATMQVTGTQLYDPTNGLVTMSITTPQSGICQAAA*
Ga0116101_119529223300009759PeatlandNVVELSNTDGIATMQVTGVQLYDPTNGLVTMSITTPQAGICAPPA*
Ga0116134_129054623300009764PeatlandDGIVTLQITGVQLYDPTNGMVTMTITTPQTGICQ*
Ga0116223_1060988113300009839Peatlands SoilEVVELSNTDGIVTMQVTGVQLYDPTNGLVTVTITSPQGGVCQ*
Ga0116223_1070257813300009839Peatlands SoilGNTDGIVTLQITGVQLYDATNGLVTVTVTAPQQGICQ*
Ga0136449_10283579113300010379Peatlands SoilDGIVTMQVTGVQLYDPTNGLVTVTIITPQGGIAQ*
Ga0181539_129973913300014151BogELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0181518_1013623113300014156BogSFTMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ*
Ga0181521_1004266673300014158BogMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGLVTMTVMTPQTGICQ*
Ga0181521_1056351823300014158BogAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0181517_1051687013300014160BogSNTDGIVTLQITGVQLYDPTNGLVTMTVVTPQTGICQ*
Ga0181538_1056542833300014162BogLIQKMGFNVVELSNTDGIVTLQVTGVQLYDATNGLVTMSITTPQGGICQ*
Ga0181538_1065622623300014162BogLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTSPLQGICQ*
Ga0181532_1042238713300014164BogTMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ*
Ga0181532_1051233823300014164BogFAVVEIGNTDGIATLQVTGTQLYDATNGLLTVSVTTPQGGVCQAAA*
Ga0181532_1074983013300014164BogTDGIVTLQITGVQLYDPTNGLVTMTVVTPQTGICQ*
Ga0181523_1041716323300014165BogATMQVTGTQLYDPTNGLVTMWITTPQSGICQAAA*
Ga0181523_1053168513300014165BogKMGFNVAELSNTDGIVTLQITGVQLYDPTNGMVTMTVMTPQTGICQ*
Ga0181523_1060412813300014165BogAELSNTDGIVTLQITGVQLYDPTNGLVTVTITTPQAGICQ*
Ga0181526_1050806913300014200BogSVGFNVVELSNTDGIATMQVTGVQLYDPTNGLVTMSITTPQAGICQ*
Ga0181526_1064134523300014200BogFNVAELSNTDGIVTLQITGVQLYDPTNGMVTMTVVTPQTGICQ*
Ga0182014_1009642213300014491BogMLIQKMGFNVVELANTDGIVTLQITGVQLYDPTNGLVTMSITTPLQGICQ*
Ga0182013_1062502113300014492BogIQKMGFSVAELGNTDGIVTLQITGVQLFDATNGLVTMTVVTPQTGICQ*
Ga0182016_1005589113300014493BogYVVELSNTDGIATLQVTGVQLYDPTNGLVTMSITTPQGGICQ*
Ga0182016_1080556813300014493BogDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ*
Ga0182017_1087329513300014494FenNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ*
Ga0182011_1099824423300014496FenELANTDGIVTLQITGVRLYDATNGLVTMTITTPLQGICQ*
Ga0182024_1053776343300014501PermafrostVAELGNTDGIVTLQITGVQLYDATNGLVTMTIITPITGICQ*
Ga0182021_1090662533300014502FenGFNVVELGNTDGIATLQVTGVQLYDATNGLVTMTVTTPQNDICS*
Ga0182021_1361144713300014502FenNTDGIATLQITGVQLYDATNGLVTVTVTTPQNGICQ*
Ga0181516_1055603923300014655BogAELSNTDGIATLQVTGVQLYDATNGLVTMSITTPQPGVCQ*
Ga0182027_1063839133300014839FenFTMLIQKLGFNVVELGNTDGIATLQVTGVQLYDATNGLVTMTVTTPQNDICS*
Ga0187849_128577913300017929PeatlandNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0187877_127653613300017931PeatlandTMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0187814_1025775023300017932Freshwater SedimentAELGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Ga0187803_1003703743300017934Freshwater SedimentMGFSVAELGNTDSIVTLQITGVQLYDATNGLVTMTIITPLTGICQ
Ga0187819_1058569313300017943Freshwater SedimentNTDGIVTLQVTGVQLYDPTNGLVTVSITTPQGGICS
Ga0187879_1030958213300017946PeatlandELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0187783_1032207113300017970Tropical PeatlandNSFSVAIQQQGFQVAELGNTDGIVTLAVTGEQLYNPTNGLVTFTILTPQAGVCAAN
Ga0187781_1058338513300017972Tropical PeatlandIQQQGFQVAELGNTDGIVTLAVTGEQLYNATNGMVTFTTTTPMGGIGQ
Ga0187780_1120032623300017973Tropical PeatlandKMGFNVVELSNTDGIATLQITGVQLYDPTNGLFTVSVTTPQAGICQ
Ga0181520_1059349613300017988BogMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0181520_1105469823300017988BogAELGNTDGIVTLQITGVQLYDATNGLVTMSITTPQNGICQ
Ga0187884_1043555223300018009PeatlandLSNTDGIATMQVTGVQLYDPTNGLVTMSITTPQAGICAPPA
Ga0187860_103127913300018014PeatlandQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0187880_103139813300018016PeatlandLGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0187881_1023206023300018024PeatlandGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0187875_1037941223300018035PeatlandFNVAELSNTDGIVTLQITGVQLYDPTNGMVTMTVVTPQTGICQ
Ga0187883_1060876313300018037PeatlandTMLIQKMGFNVAELGNTDGIVTLQITGVQLFDATNGLVTMTVVTPQTGICQ
Ga0187855_1076128413300018038PeatlandTMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVMTPQTGICQ
Ga0187887_1006919813300018043PeatlandNTDGIATMQVTGVQLYDPTNGLVTMSITTPQSGIAQAA
Ga0187887_1033144423300018043PeatlandMLIQKMGFNVAELGKTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0187887_1053559813300018043PeatlandLGNTDGIATLQITGVQLYDATNGLVAVTVTTPQNGICQ
Ga0187887_1057455523300018043PeatlandFTMTIQQMGFNVVELSNTDGIATLQVTGVQLYNATNGLVTMSITTPQGGICQ
Ga0187890_1041225813300018044PeatlandQSMGFNIVELSNTDGIATMQVTGVQLYDPTNGLVTMSITTPQTGICQAAA
Ga0187851_1054292913300018046PeatlandMTIQKMGFNVVELSNTDGIATMQVTGVQLYDATNGLVTMSITTPQGGICQAAA
Ga0187859_1066105923300018047PeatlandQMGFNVVELSNTDGIATLQVTGVQLYNATNGLVTMSITTPQGGICQ
Ga0187859_1084237823300018047PeatlandVVQKMGFAVVELGNTDGIVTLQITGVQLYDATNGLLTVTVVTPQNGIAQ
Ga0187784_1102825613300018062Tropical PeatlandNNSFSVTIQQQGFEVAELSNTDGIVTLAVTGAQLYNAANGLVTVSVTSPQGGICQ
Ga0187852_138143513300019082PeatlandELSNTDGIVTLQITGVQLYDPTNGLVTMTVVTPQTGICQ
Ga0182022_121672813300019785FenIQKMGFNVVELGNTDGIATLQITGVQLYDATNGLVTVTVTTPQNGICQ
Ga0182022_127538543300019785FenMLIQKMGFNVVELGNTDGIATLQITGVQLYDATNGLVTVTVTTPQNGICQ
Ga0182031_156270743300019787BogRRRTRNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0182028_115654133300019788FenMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0182028_116718913300019788FenQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0182028_149944333300019788FenMLIQKMGFNVVELGNTDGIATLQITGVRSTTPPTALVTVTVTTPQNGICQ
Ga0213853_1125283213300021861WatershedsMGFSVAELGNTEGIVTLQITGVQLYDATNGLVTMTIITPLTGICQ
Ga0224554_114403423300023068SoilIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0224520_115303113300023075SoilNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0208193_101337553300025463PeatlandLGNTDGIVTLQITGVQLFDPTNGLVTMTVVTPQTGICQ
Ga0208937_106521413300025506PeatlandNVAELGNTDGIVTLQITGVQLYDATNGLVTMTITTPQTGICQ
Ga0208691_111342923300025612PeatlandGIATMQVTGVQLYDPTNGLVTMSITTPQNGICQAAA
Ga0209415_1088253813300027905Peatlands SoilSNTDGIATMQVTGVQLYDPTNGLVTMSITTPQNGICQAPS
Ga0311327_1021351013300029883BogMAIQSMGFSVVELSNTDGIATMQITGVQLYDPTNGLVTMSVTTPMAAICT
Ga0311361_1085064723300029911BogTMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGLVTMTIVTPQTGICQ
Ga0311362_1074789123300029913BogFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0311358_1085464013300029915BogVELSNTDGIATMQVTGVQLYDATNGLVTMSITTPQGGICQAAS
Ga0311330_1059800313300029945BogMTIQKMGFNVVELSNTDGIATMQVTGVQLYDATNGLVTMSITTPQGGICQAAS
Ga0311331_1097780423300029954BogFTMLIQKLGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0311342_1131449013300029955BogIQSMGFNVVELSNTDGIATMQVTGVQLYDPTNGLVTMSITTPMAAICS
Ga0311354_1094893823300030618PalsaVLRRTRSYSNTDGIVTLQITGVQLYDSTNGMVTMTVVTPQTGICQ
Ga0311345_1007183173300030688BogNNIFTMAIQSMGFNVVELSNTDGIATMQVTGVQLYDPTNGLVTMSITTPMAAICS
Ga0311335_1042845413300030838FenSFTMLIQKLGFNVVELGNTDGIATLQVTGVQLYDATNGLVTMTVTTPQNGICQ
Ga0302325_1248978013300031234PalsaMGFSVAELSNTDGIVTLQITGVQLYDPTNGLVTVTITTPQAGICQ
Ga0302324_10293532023300031236PalsaAELGNTDGIVTLQITGVQLFDPTNGLVTMTVVTPQTGICQ
Ga0265329_1012241323300031242RhizosphereVYNSFTMLIQKMGFNVAELGNTDGIVMLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0265339_1052957613300031249RhizosphereNSFTMAIQSMGFNVVELSNTDGIATMQVTGVQLYDPTNGLVTMSITTPQGGICQAPA
Ga0302320_1019318613300031524BogSMVVQKMGFSVAELGSTDGIVTLQVTGDQLYDPTNGLVTFTTVTPQTGICQ
Ga0302320_1066121133300031524BogFNVAELGNTDGIVTLQITGVQLYDPANGMVTMTITTPLQGICQ
Ga0302320_1073988333300031524BogKMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0302326_1109248013300031525PalsaSGSNVLRRTRSYSNTDGIVTLQITGVQLYDSTNGMVTMTVVTPQTGICQ
Ga0310686_10650889323300031708SoilFSVAELGNTDCIVTLQITGVQLYDATNGLVTMTIITPITGICQ
Ga0265314_1026905713300031711RhizosphereAIQSMGFNVVELSNTDGIATLQVTGIQLYDSTNGLVTMSITTPMAGICQ
Ga0335085_1028803943300032770SoilMLIQKMGFNVAELSNTDGIVTLLITDVQLFDLTNGLVTMTVTTPQVGICQ
Ga0335078_1008191073300032805SoilGFNVAELGNTDGIVTLQITGVQLYDATNGLVTMTIITPQTGICQ
Ga0335078_1114085113300032805SoilVELSNTDGIVTMQITGVQLYDATNGLVTFTIITPQNNICQ
Ga0335078_1140287223300032805SoilTFTRDVNNSFTMTIQKMGFNVVELGNTDGIATLQITGVQLYDPTNGLLTVTVVTPQNGIC
Ga0335080_1084417613300032828SoilELGNTDGIVTLQITGVQLYDATNGLVTVTVTTPQTGICQ
Ga0335080_1099795923300032828SoilVAELGNTDGIVTLQITGVQLYDPTNGMVTMTVTTPLQGICQ
Ga0335080_1217459223300032828SoilITIQQQGFEVAELGNTDGIATLAVTGAQLYNPINGLVTFATTTPQNGICQ
Ga0335081_1065356633300032892SoilVAELGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Ga0335081_1088164213300032892SoilTDGIATLQITGVQLYDPTNGLFTVSVTTPQAGICQ
Ga0335081_1124322823300032892SoilGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Ga0335081_1175517413300032892SoilIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Ga0335069_1196575023300032893SoilSVVELGNTDGIATMQITGSQLYDATNGLVTFTTTTPQDGICQAPAE
Ga0335071_1014736943300032897SoilVVELSNTDGIATLQITGVQLYDPTNGLFTVSVTTPQAGICQ
Ga0335071_1035824913300032897SoilTMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Ga0335076_1006900373300032955SoilMLIQKMGFNVAELGNTDGIVTLQITGVQLYDPTNGLVTMTVTTPLQGICQ
Ga0326728_1000856623300033402Peat SoilMGFNVAELSNTDGIATLQVTGVQLYAPTNGLVTVAITTPQGGICQ
Ga0326728_1084681823300033402Peat SoilNTDGIATMQVTGVQLYDPTNGLVTMSITTPQAGICAAA
Ga0326727_1100798113300033405Peat SoilELGNTDGIATLQVTGVQLYDPTNGLVTMSVTTPQTGICQ
Ga0334837_047047_7_1443300033823SoilMGFNVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0334837_051004_3_1283300033823SoilVAELGNTDGIVTLQITGVQLYDPTNGMVTMTITTPLQGICQ
Ga0314861_0532955_8_1603300033977PeatlandMLIQKMGFNVAELSNTDGIVTLQITGVQLFDPTNGLVTMTVTTPQGSICQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.