Metagenome / Metatranscriptome Family F071908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071908
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	55 residues
Representative Sequence	LLELGAFLAELLRTIRVVPDAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Number of Associated Samples	97
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	28.33 %
% of genes near scaffold ends (potentially truncated)	49.59 %
% of genes from short scaffolds (< 2000 bps)	77.69 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.719 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.876 % of family members)
Environment Ontology (ENVO)	Unclassified (23.140 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.066 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.44% β-sheet: 0.00% Coil/Unstructured: 47.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF03462	PCRF	30.58
PF02272	DHHA1	12.40
PF01336	tRNA_anti-codon	4.96
PF00990	GGDEF	4.13
PF00248	Aldo_ket_red	3.31
PF00136	DNA_pol_B	3.31
PF13426	PAS_9	1.65
PF00072	Response_reg	0.83
PF01135	PCMT	0.83
PF13544	Obsolete Pfam Family	0.83
PF03737	RraA-like	0.83
PF01127	Sdh_cyt	0.83
PF07896	DUF1674	0.83
PF00593	TonB_dep_Rec	0.83
PF08335	GlnD_UR_UTase	0.83
PF00563	EAL	0.83
PF13534	Fer4_17	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	30.58
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	30.58
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	3.31
COG0684	RNA degradosome component RraA (regulator of RNase E activity)	Translation, ribosomal structure and biogenesis [J]	0.83
COG2009	Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	Energy production and conversion [C]	0.83
COG2142	Succinate dehydrogenase, hydrophobic anchor subunit	Energy production and conversion [C]	0.83
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.83
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.83
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.83
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.83
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.83
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.83
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.83
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.83
COG5508	Uncharacterized conserved protein, DUF1674 domain	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.72 %
Unclassified	root	N/A	46.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.72 %
Unclassified	root	N/A	46.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.72 %
Unclassified	root	N/A	46.28 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.28 %
Unclassified	root	N/A	46.28 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	36.36 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	4.13 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.65 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.83 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	3.31 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1.65 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.83 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.83 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	0.83 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	3.31 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.83 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.83 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.83 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.83 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.83 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	2.48 %
unclassified Verrucomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae	0.83 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.83 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.83 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.83 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.83 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	2.48 %
Verrucomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	0.83 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.83 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.83 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.83 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.83 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10262505	Not Available	551	Open in IMG/M
3300004082\|Ga0062384_100663917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	714	Open in IMG/M
3300004082\|Ga0062384_100855397	Not Available	640	Open in IMG/M
3300004082\|Ga0062384_101454021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	506	Open in IMG/M
3300004635\|Ga0062388_100543673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1051	Open in IMG/M
3300004635\|Ga0062388_102518931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	540	Open in IMG/M
3300005537\|Ga0070730_10038694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3530	Open in IMG/M
3300005541\|Ga0070733_10033706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3193	Open in IMG/M
3300005546\|Ga0070696_100005491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8460	Open in IMG/M
3300005546\|Ga0070696_100303858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1223	Open in IMG/M
3300005602\|Ga0070762_11095734	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300005993\|Ga0080027_10028684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1985	Open in IMG/M
3300005993\|Ga0080027_10166735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	851	Open in IMG/M
3300005994\|Ga0066789_10153774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	977	Open in IMG/M
3300009088\|Ga0099830_11858181	Not Available	503	Open in IMG/M
3300009093\|Ga0105240_10239046	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300009143\|Ga0099792_10006841	All Organisms → cellular organisms → Bacteria → Proteobacteria	4629	Open in IMG/M
3300009500\|Ga0116229_10003936	All Organisms → cellular organisms → Bacteria → Proteobacteria	24419	Open in IMG/M
3300009521\|Ga0116222_1358223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	633	Open in IMG/M
3300009623\|Ga0116133_1205931	Not Available	530	Open in IMG/M
3300009631\|Ga0116115_1200692	Not Available	503	Open in IMG/M
3300009635\|Ga0116117_1166965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	572	Open in IMG/M
3300009665\|Ga0116135_1372566	Not Available	575	Open in IMG/M
3300009665\|Ga0116135_1388156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	564	Open in IMG/M
3300009701\|Ga0116228_10045832	Not Available	3531	Open in IMG/M
3300009709\|Ga0116227_10032229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5537	Open in IMG/M
3300009709\|Ga0116227_10310985	Not Available	1206	Open in IMG/M
3300009709\|Ga0116227_10435454	Not Available	998	Open in IMG/M
3300009709\|Ga0116227_10796603	Not Available	712	Open in IMG/M
3300009787\|Ga0116226_10007992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9584	Open in IMG/M
3300009787\|Ga0116226_10300667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1653	Open in IMG/M
3300010341\|Ga0074045_10016503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5928	Open in IMG/M
3300010341\|Ga0074045_10099314	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300010371\|Ga0134125_10464069	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300010373\|Ga0134128_10376767	All Organisms → cellular organisms → Bacteria → Proteobacteria	1585	Open in IMG/M
3300011120\|Ga0150983_12173898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	756	Open in IMG/M
3300012209\|Ga0137379_10998458	Not Available	742	Open in IMG/M
3300012924\|Ga0137413_11345050	Not Available	575	Open in IMG/M
3300012982\|Ga0168317_1003874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6217	Open in IMG/M
3300014156\|Ga0181518_10072494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1983	Open in IMG/M
3300014162\|Ga0181538_10169285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	1242	Open in IMG/M
3300014165\|Ga0181523_10333466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	852	Open in IMG/M
3300014167\|Ga0181528_10538074	Not Available	644	Open in IMG/M
3300014167\|Ga0181528_10641407	Not Available	590	Open in IMG/M
3300014201\|Ga0181537_10005043	All Organisms → cellular organisms → Bacteria → Proteobacteria	10756	Open in IMG/M
3300014495\|Ga0182015_10782765	Not Available	599	Open in IMG/M
3300015082\|Ga0167662_1036081	Not Available	630	Open in IMG/M
3300017946\|Ga0187879_10014757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4893	Open in IMG/M
3300017948\|Ga0187847_10001356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	22299	Open in IMG/M
3300017948\|Ga0187847_10226238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1019	Open in IMG/M
3300018022\|Ga0187864_10197466	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300018034\|Ga0187863_10555425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	644	Open in IMG/M
3300018043\|Ga0187887_10967842	Not Available	503	Open in IMG/M
3300018047\|Ga0187859_10183680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1114	Open in IMG/M
3300019787\|Ga0182031_1327531	Not Available	580	Open in IMG/M
3300020580\|Ga0210403_10620690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	872	Open in IMG/M
3300020581\|Ga0210399_10535940	Not Available	972	Open in IMG/M
3300020582\|Ga0210395_10452529	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300020583\|Ga0210401_10267455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1569	Open in IMG/M
3300020583\|Ga0210401_10491396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1090	Open in IMG/M
3300021170\|Ga0210400_10617123	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300021402\|Ga0210385_10960000	Not Available	657	Open in IMG/M
3300021403\|Ga0210397_10743257	Not Available	756	Open in IMG/M
3300021403\|Ga0210397_10760766	Not Available	747	Open in IMG/M
3300021406\|Ga0210386_10290513	Not Available	1400	Open in IMG/M
3300021406\|Ga0210386_10396653	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300021406\|Ga0210386_10532913	All Organisms → cellular organisms → Bacteria → Proteobacteria	1015	Open in IMG/M
3300021420\|Ga0210394_10153118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2004	Open in IMG/M
3300021420\|Ga0210394_11549003	Not Available	559	Open in IMG/M
3300021433\|Ga0210391_10945394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	672	Open in IMG/M
3300021475\|Ga0210392_10774820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	716	Open in IMG/M
3300022717\|Ga0242661_1151064	Not Available	521	Open in IMG/M
3300024275\|Ga0247674_1016049	All Organisms → cellular organisms → Bacteria → Proteobacteria	858	Open in IMG/M
3300024347\|Ga0179591_1029848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3499	Open in IMG/M
3300025913\|Ga0207695_10179062	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300025913\|Ga0207695_10226727	Not Available	1774	Open in IMG/M
3300026281\|Ga0209863_10034925	Not Available	1512	Open in IMG/M
3300026557\|Ga0179587_10171061	Not Available	1363	Open in IMG/M
3300026557\|Ga0179587_10285547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1061	Open in IMG/M
3300027037\|Ga0209005_1002521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2129	Open in IMG/M
3300027545\|Ga0209008_1142271	Not Available	529	Open in IMG/M
3300027568\|Ga0208042_1117625	Not Available	670	Open in IMG/M
3300027574\|Ga0208982_1074904	Not Available	680	Open in IMG/M
3300027583\|Ga0209527_1157880	Not Available	501	Open in IMG/M
3300027609\|Ga0209221_1085997	Not Available	816	Open in IMG/M
3300027635\|Ga0209625_1058193	Not Available	862	Open in IMG/M
3300027795\|Ga0209139_10228716	Not Available	657	Open in IMG/M
3300027853\|Ga0209274_10000017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	187427	Open in IMG/M
3300027853\|Ga0209274_10563149	Not Available	590	Open in IMG/M
3300027860\|Ga0209611_10011126	All Organisms → cellular organisms → Bacteria → Proteobacteria	13056	Open in IMG/M
3300027869\|Ga0209579_10556576	Not Available	622	Open in IMG/M
3300027908\|Ga0209006_10226364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	1616	Open in IMG/M
3300028536\|Ga0137415_10231200	Not Available	1661	Open in IMG/M
3300028906\|Ga0308309_11141697	Not Available	673	Open in IMG/M
3300028906\|Ga0308309_11491023	Not Available	578	Open in IMG/M
3300029910\|Ga0311369_11222206	Not Available	579	Open in IMG/M
3300029911\|Ga0311361_10020534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	12196	Open in IMG/M
3300029915\|Ga0311358_11055292	Not Available	553	Open in IMG/M
3300029951\|Ga0311371_10226817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2731	Open in IMG/M
3300029955\|Ga0311342_10980652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	629	Open in IMG/M
3300029956\|Ga0302150_10302610	Not Available	596	Open in IMG/M
3300030011\|Ga0302270_10411288	Not Available	720	Open in IMG/M
3300030225\|Ga0302196_10271256	Not Available	790	Open in IMG/M
3300030399\|Ga0311353_10130833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2411	Open in IMG/M
3300030503\|Ga0311370_10476417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1539	Open in IMG/M
3300030688\|Ga0311345_10493223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1056	Open in IMG/M
3300031231\|Ga0170824_100000392	Not Available	571	Open in IMG/M
3300031231\|Ga0170824_117560442	Not Available	560	Open in IMG/M
3300031232\|Ga0302323_102528888	Not Available	586	Open in IMG/M
3300031234\|Ga0302325_10402598	All Organisms → cellular organisms → Bacteria → Proteobacteria	2132	Open in IMG/M
3300031236\|Ga0302324_100228780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2930	Open in IMG/M
3300031236\|Ga0302324_100820826	Not Available	1291	Open in IMG/M
3300031708\|Ga0310686_119284110	Not Available	1331	Open in IMG/M
3300031715\|Ga0307476_10623127	Not Available	800	Open in IMG/M
3300031788\|Ga0302319_11330328	Not Available	653	Open in IMG/M
3300031954\|Ga0306926_11323324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	840	Open in IMG/M
3300032515\|Ga0348332_11128513	Not Available	515	Open in IMG/M
3300033547\|Ga0316212_1020334	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300033982\|Ga0371487_0389534	Not Available	605	Open in IMG/M
3300034282\|Ga0370492_0263503	Not Available	700	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.26%
Host-Associated	Host-Associated	10.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.42%
Aquatic	Environmental → Aquatic	19.83%
Plants	Host-Associated → Plants	10.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.72%
Freshwater	Environmental → Aquatic → Freshwater	19.83%
Peat	Environmental → Terrestrial → Peat	14.05%
Peat Moss	Host-Associated → Plants → Peat Moss	7.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.48%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%
Geologic	Environmental → Terrestrial → Geologic	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.05%
Loam	Environmental → Terrestrial → Soil → Loam	13.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.44%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	7.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%
Mine	Environmental → Terrestrial → Geologic → Mine	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.18%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.57%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	7.44%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.13%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.65%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.44%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	7.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.61%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.13%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.13%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.48%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	2.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.65%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.83%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015082	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11c, vegetated hydrological feature)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027037	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027574	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_102625052	3300000567	Peatlands Soil	VVQVVDDPFELRAFFSEFLRAIRVVPDAGLLELASYFLKALVLVVVIKDTPSRSRCVPRDR*
Ga0062384_1006639171	3300004082	Bog Forest Soil	VIQTAHDLLEFRAVPTEFLRTFRVIPDAGLLEFAGYFLQALALVVVIKDTSSKSR
Ga0062384_1008553971	3300004082	Bog Forest Soil	FELGAFLPEFLSALRIAPDAGLLQFALYFLQTLVFIVVIKDTSSKSRCALRDL*
Ga0062384_1014540211	3300004082	Bog Forest Soil	LLELRALSAEFLGALRVVPDAGLFEFANYFLQALILVVVIKDTSSKS
Ga0062388_1005436731	3300004635	Bog Forest Soil	LFELGAFLPEFLSALRIAPDAGLLQFALYFLQTLVFIVVIKDTSSKSRCALRDL*
Ga0062388_1025189311	3300004635	Bog Forest Soil	ALEPIETADDLLELGAFLSQLLGALRIVPNTGLLELALYFLQPLVLVVVIKDTSSKSRRALRDL*
Ga0070730_100386943	3300005537	Surface Soil	LLELGALLAELLRTLRVVPDAGLFQLADYFLQPLVLVVVIKDTSSKSRCAPRDL*
Ga0070733_100337062	3300005541	Surface Soil	LLQLGALLPKFLGALRVVPNAGLLELALYFLQPLVLVVVIKDTSSKSRCAPRDL*
Ga0070696_10000549110	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAADDLFELGTLLPQLLRAIRIIPNAGLFELACYFLQAFVFVVVIKDTSSKSRCAPRDL*
Ga0070696_1003038582	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LLELGALLAQFLSAVRVVPDSGLFELALYFLQALVFVVVIKDTSSKSRCALRDL*
Ga0070762_110957341	3300005602	Soil	ALLPEFLGALRVVPNAGLLELALYFLQPLVLVAVIKDTSSKSRCAPRDL*
Ga0080027_100286842	3300005993	Prmafrost Soil	VVELGTLLPQLLGAIRITPNTRLLELALYLLQPLVFVFVIKDTSSKSRFAPRDL*
Ga0080027_101667352	3300005993	Prmafrost Soil	LLKFGALLAQFLRAVRVVPDAGLLEFALYLLQALLLVSVIKDTSSKSRCAPRDL
Ga0066789_101537741	3300005994	Soil	LFEFGTLLPELLRALRIVPNAGLLEFALYFLETLVFVVVIKDTSSKSRCAPRDL*
Ga0099830_118581811	3300009088	Vadose Zone Soil	LLEAIQAAYDLLELGAFLPQLLSAIRVVPNSGLLELALYFLQPLVLVVVIKDTSSKSRCALRDL*
Ga0105240_102390463	3300009093	Corn Rhizosphere	AQFLRAVRVVPDSGLFELALYFLQALVFVVVIKDTSSKSRCAPRDL*
Ga0099792_100068411	3300009143	Vadose Zone Soil	IQAAHDLLELGAFLPQLLCAVRVVPNAGLLELALYFLQPLVLVVVIKDTSSKSRCALRDL
Ga0116229_1000393611	3300009500	Host-Associated	LVELGALLAEFLRAFRVVPDAGLFEFALYFLQAFVFIVVIKDTSSKSRYAPRDL*
Ga0116222_13582231	3300009521	Peatlands Soil	ALPAEILRAIRVVPNAGLFELAGYFLQPLVLVVVIKDTSSKSRCAPRDL*
Ga0116133_12059311	3300009623	Peatland	VFQFGAFLAELLSPIRVIPDAGLLELAGYFLQAFVLVVVIKDTSSRSRYAPRDL*
Ga0116115_12006922	3300009631	Peatland	VFQLGAFLTELLGSIRVIPDAGLLELASYFLKALVLVVVIKDTSSR
Ga0116117_11669652	3300009635	Peatland	VFQFGAFLAELLSPIRVIPDAGLLELAGYFLQALVLVVVIKDTSSRSRCAPRDL*
Ga0116135_13725662	3300009665	Peatland	MFQLGAFLAELLSSIRVVPDPGLLELARYFLQALVFVVVIKDTSSKSRCAPRDL*
Ga0116135_13881561	3300009665	Peatland	PGAFLAELLRPIRVVPDAGLFELASYFLQALVLVVVIKDTSSKSRCALRDL*
Ga0116228_100458322	3300009701	Host-Associated	LFQLRPFAAQVLRALGIIPDAGLFELAGYLLEAFVLVIVIKDTSSRSRCAPRDL*
Ga0116227_100322297	3300009709	Host-Associated	LVELGALLAEFLRAFRVVPDAGLFEFALYFLQAFVFIVVIKDTSSKS
Ga0116227_103109851	3300009709	Host-Associated	PVQSVDDLFQLRPFAAQILRALRIIPDAGLFELAGYLLEAFVLVVVIKDTSSRSRCAPRDL*
Ga0116227_104354542	3300009709	Host-Associated	ALLAEFLRTLRVIPDAGLLELTGYLLQPLVLVVVIKDTPSRSRFVPRDL*
Ga0116227_107966032	3300009709	Host-Associated	VFQFGALLAELLSPLSVVPDAGLFELASYFLQALVFVVVIKDTSSKSRYAPRDL*
Ga0116226_100079929	3300009787	Host-Associated	LFQLRPFAAQVLRALGIIPDAGLFELAGYLLEAFVLIVVIKDTSSRSRCAPRDL*
Ga0116226_103006672	3300009787	Host-Associated	MIQGTDDLFESGAFLAEFLGPFRVVPDFGLLELPRYFLQTLVLVVVIKDTSSRNRCAPRDL*
Ga0074045_100165037	3300010341	Bog Forest Soil	VIQTRDDLLELRTLPAEILRAIRVAPNARLFELAGYFLQPLVLVLVIKDTSSKSRSAPQDL*
Ga0074045_100993142	3300010341	Bog Forest Soil	VIQTRDDLLELRALPAEILRAIRVAPNAGLFELAGYFLQPLVLVLVIKDTSSKSRSAPRDL*
Ga0134125_104640692	3300010371	Terrestrial Soil	LLAQFLRAVRVVPDSGLFELALYFLQALVFVVVIKDTSSKSRCAPRDL*
Ga0134128_103767672	3300010373	Terrestrial Soil	LLELGALLAQFLRAVRVVPDSGLFELALYFLQALVFVVVIKDTSSKSRCAPRDL*
Ga0150983_121738981	3300011120	Forest Soil	LLELGAFLAELLRTIRVVPDAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL*
Ga0137379_109984581	3300012209	Vadose Zone Soil	ATYDLLELGAFLPKLLSAIRVVPNAGLLELAFYFLQPLVFVAVIKDTSSKSRCALRDL*
Ga0137413_113450502	3300012924	Vadose Zone Soil	GAFLPQLLCAVRVVPNAGLLELALYFLQPLVFVVVIKDTSSKSRCALRDL*
Ga0168317_10038746	3300012982	Weathered Mine Tailings	LFQLRAVLAELLRAVRVIPDIRLFEFASYFLEAFALIVVIKDTSSKNRCAPRDL*
Ga0181518_100724942	3300014156	Bog	VIQTRDDLLELRALPAEILRAIRVAPNARLFELAGYFLQPLVLVLVIKDTSSKSRSAPRDL*
Ga0181538_101692852	3300014162	Bog	VIQTRDDLLELRALPAEILRPIRIAPNAGLFEFAGYFLQPLVLVLVIKDTSSKSRSAPRDL*
Ga0181523_103334662	3300014165	Bog	EFGALPAEFLCPLCLVPDSRLFEFARYFLQSLVLVVVIKDTSSKSRCAPRDL*
Ga0181528_105380742	3300014167	Bog	LIQVGDHGLELGPFLAEFLGALRVVPDARLLEFAGYLLEAFVLVVVIKDTSSRNRCVPRDL*
Ga0181528_106414071	3300014167	Bog	VFQFGAFLAELLSPIRVIPDAGLLELAGYFLQALVLVVVIKDTSSRSRYAPRDL*
Ga0181537_100050438	3300014201	Bog	LLELGALLAEFLRALGVIPDAGLFELALYFLQTFVFVVVIKDTSSKSRCAPRDL*
Ga0182015_107827651	3300014495	Palsa	EFLSALRVVPNAGLLELALYFLQPLVFVVVIKDTSSKSRCAPRDL*
Ga0167662_10360812	3300015082	Glacier Forefield Soil	VQAADDLFEFGALLAQFLSAIRVIPNAGLLELALYFLQALVPIVVIKDTSSESRCAPRDL
Ga0187879_100147572	3300017946	Peatland	MFQLGAFLAELLSSIRVVPDPGLLELARYFLQALVFVVVIKDTSSKSRCAPRDL
Ga0187847_1000135615	3300017948	Peatland	MFELGAFLAELLSSIRVVPDPGLLELARYFLQALVFVVVIKDTSSKSRCAPRDL
Ga0187847_102262382	3300017948	Peatland	LLELGALLAELLRPIRVVPDAGLFEFPNYFLQTLVLVVVIKDTSSKSRYAPRDL
Ga0187864_101974661	3300018022	Peatland	SFFSEFLRAIRVVPDAGLLELASYFLKALVLVVVIKDTPSRSRCVPRDR
Ga0187863_105554251	3300018034	Peatland	LLELGAFLAELLRTIRVVPDAGLFELADYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0187887_109678422	3300018043	Peatland	LLELGALLAELLRPIRVVPDAGLFEFPNYFLQKLVLVVVIKDTSSKSRYAPRDL
Ga0187859_101836801	3300018047	Peatland	QTVDHLFQFGAFPAELLSPIRVVPDPGLFELAGYFLQALVLVVVIKDTSSRSRCAPRDL
Ga0182031_13275312	3300019787	Bog	GVAQAARQPIKAAHHLLELGALLAEFLRPFRVVPDAGLFEFPNYFLQKLVLVVVIKDTSSKSRFAPRDL
Ga0210403_106206902	3300020580	Soil	LLELGAFLAELLRTIRLVPDAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0210399_105359402	3300020581	Soil	VVQAAYDLLEFGAFLPQFLGAIRVVPNAGLLELALYFLQPLVFVVVIKDTSSKSRCALRD
Ga0210395_104525292	3300020582	Soil	ELLSPIRVVPDPGLFELAGYFLQALVLIVVIKDTSSKSRCAPRDL
Ga0210401_102674552	3300020583	Soil	LLELGALLAELLRTIRVVPDTGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0210401_104913962	3300020583	Soil	GALPAEFLCAFGIVPDSGLLEFARYFLQPLVLVVVIKDTSSKSRCALRDL
Ga0210400_106171232	3300021170	Soil	LLQLGALLPEFLGALRVVPNAGLLELALYFLQPLVLVAVIKDTSSKSRCAPRDL
Ga0210385_109600002	3300021402	Soil	LLELGAFLAELLGTIRVVPDAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0210397_107432571	3300021403	Soil	EFLRAVRVAPNAGLFELALYFLQALMLVIVIKDTSSKSRCALRDL
Ga0210397_107607662	3300021403	Soil	LLEFGALLAEFLRAVRVAPNAGLFELALYFLQALMLVIVIKDTSSKSRCAPRDL
Ga0210386_102905132	3300021406	Soil	LFQFGAFPAELLSPIRVVPDPGLFELAGYFLQALVLVVVIKDTSSRSRCAPRDL
Ga0210386_103966532	3300021406	Soil	LLELGALLAELLRTLRVVPDAGLFQLANYFLQPLVLVVVIKDTSSKSRYALRDL
Ga0210386_105329132	3300021406	Soil	LLQLGALLPEFLGALRVVPNAGLLELALYFLQPLVLVVVIKDTSSKSRCAPRDL
Ga0210394_101531182	3300021420	Soil	ADHLLELGAFLAQLLRSIGGIPDSGLLELALYFLQPLVLVVVIKDTSSKRRCARRGL
Ga0210394_115490032	3300021420	Soil	LLELGALLAELLRTIRVVPDAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0210391_109453942	3300021433	Soil	LLELGAFLAELLGAIRVVPDARLFELADYFLQSLVLVVVIKDTSSKSRYALRDL
Ga0210392_107748201	3300021475	Soil	QALSKAVQANHHLFELGALLAEILGAIGLVPNAGLFQLAGYFLEALVFVVVIKDTSSRNRCAPRDL
Ga0242661_11510641	3300022717	Soil	LLELGALLAELLRTIRVVPNAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0247674_10160492	3300024275	Soil	GALLAEFLRAVRVAPNSGLFELALYLLQPLMLVIVIKDTSSKSRCAPRDL
Ga0179591_10298483	3300024347	Vadose Zone Soil	LFELGALLAEILGAIGIVPNAGLFELAGYFLKALVFIVVIKDTSSRNRCAPRDL
Ga0207695_101790621	3300025913	Corn Rhizosphere	AQFLRAVRVVPDSGLFELALYFLQALVFVVVIKDTSSKSRCAPRDL
Ga0207695_102267271	3300025913	Corn Rhizosphere	AQFLSAVRVVPDSGLFELALYFLQALVFVVVIKDTSSKSRCALRDL
Ga0209863_100349252	3300026281	Prmafrost Soil	VVELGTLLPQLLGAIRITPNTRLLELALYLLQPLVFVFVIKDTSSKSRFAPRDL
Ga0179587_101710611	3300026557	Vadose Zone Soil	GALEAIQAAHHLLELGAFLSQFLSAIRVVPNSGLLELALYFLQPLVFVVVIKDTSSKSRRALRDL
Ga0179587_102855472	3300026557	Vadose Zone Soil	LFELGPLLPQFLSAIRVVPNAGLLELTLYFLQPLVFVVVIKDTSSKSRCAPRDL
Ga0209005_10025212	3300027037	Forest Soil	LLQLGALLAEILGAVGIVPNAGLFEFARYFLKALVLIVVIKDTSSRNRCAPRDL
Ga0209522_10372142	3300027119	Forest Soil	SVQSDDHLLQLGALLAEILGAVGIVPNAGLFEFARYFLKALVLIVVIKDTSSRNRCAPRD
Ga0209008_11422711	3300027545	Forest Soil	RALLSKLLRTIGVVPNARLLQLARDFLKTLVLVVVIKDTSSKSRCAPRDL
Ga0208042_11176252	3300027568	Peatlands Soil	VVQVVDDPFELRAFFSEFLRAIRVVPDAGLLELASYFLKALVLVVVIKDTPSRSRCVPRD
Ga0208982_10749042	3300027574	Forest Soil	VVQAADHLLELGAFLPKFLGTIRIIPYARLLELALYLLQPLVFVVVIKDTSSKSRCAPRD
Ga0209527_11578801	3300027583	Forest Soil	VAIQTADDLLELGAFLAQLLRSIGGIPDSGLLELALYFLQPLMLVVVIKDTSSRNRCVPRDL
Ga0209221_10859971	3300027609	Forest Soil	DLLELGAFFSQFLRTVRIAPNAGLLELALYFLQPLVLVIVIKDTSSKSRCALRDL
Ga0209625_10581932	3300027635	Forest Soil	VQGAYEAIQAADDLLELGAFLAQLLSAVRVVPNAGLLELALYFLKPLVFVVVIKDTSSKRRCALRDL
Ga0209139_102287162	3300027795	Bog Forest Soil	DDLFQFGAFLAEFLRALRIVPDAGLLQLALYFLQPLVFIVVIKDTSSKSRCAPRDL
Ga0209274_1000001759	3300027853	Soil	LLQLGALLPEFLGALRVIPNAGLLELALYFLQPLVLVVVIKDTSSKSRRAPRDL
Ga0209274_105631492	3300027853	Soil	QAADDLLELGAFPAQLLRAIRVAPNARLFQFALYFLKPLVFIVVIKDTSSKSRCAPRDL
Ga0209611_1001112610	3300027860	Host-Associated	LVELGALLAEFLRAFRVVPDAGLFEFALYFLQAFVFIVVIKDTSSKSRYAPRDL
Ga0209579_105565762	3300027869	Surface Soil	ALLAELLGTIRVVPDAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0209006_102263642	3300027908	Forest Soil	QLVQAAHHLLELGAFLAELLRTIRVVPDAGLFELANYFLQPLVLIVVIKDTSSKSRYAPRDL
Ga0137415_102312002	3300028536	Vadose Zone Soil	QAAHHLLELGAFLSQFLSAIRVVPNSGLLELALYFLQPLVFVVVIKDTSSKSRRALRDL
Ga0308309_111416972	3300028906	Soil	AHHLLELGAFLAELLGAIRVVPDARLFELADYFLQSLVLVVVIKDTSSKSRYALRDL
Ga0308309_114910232	3300028906	Soil	LLELGAFLAQLLSAVRVVPNAGLLELALYFLKPLVFVVVIKDTSSKRRCALRDL
Ga0311369_112222061	3300029910	Palsa	FSQFLRTVRIAPNAGLLELALYFLQPLVLVIVIKDTSSKSRCALRDL
Ga0311361_1002053414	3300029911	Bog	LIELGTFLPQLLSAIGVVPNAGLLELALYFLKTFEFVVVIKDTSSKSRRAPRDL
Ga0311358_110552921	3300029915	Bog	AFLAELLSPIRVIPDAGLLELAGYFLQALVLVVVIKDTSSRSRCAPRDL
Ga0311371_102268173	3300029951	Palsa	LFELGAFLAELLRALGVVPDPGLLQLALYFLQTFVFVVVIKDTSSKSRCALRDL
Ga0311342_109806521	3300029955	Bog	LGTFLPQLLSAIGVVPNAGLLELALYFLKTFEFVVVIKDTSSKSRRAPRDL
Ga0302150_103026101	3300029956	Bog	LLAEVLSAFRVVPNAGLLELANYFLQPLTLVVVIKDTSSRNRCVPRDL
Ga0302270_104112882	3300030011	Bog	QTARQVIETVDYLFEPGALLAEVLSAFRVVPNAGLLELANYFLQPLTLVVVIKDTSSRKQCAPRDL
Ga0302196_102712562	3300030225	Bog	VFQFGAFLAELLSPIRVIPDAGLLELAGYFLQALVLVVVIKDTSSRSRCAPRDL
Ga0311353_101308331	3300030399	Palsa	DLFELGAFLAELLRALGVVPDPGLLQLALYFLQTFVFVVVIKDTSSKSRCALRDL
Ga0311370_104764171	3300030503	Palsa	AFLAELLRALGVVPDPGLLQLALYFLQTFVFVVVIKDTSSKSRCALRDL
Ga0311345_104932232	3300030688	Bog	DHLFEPGALLAEVLSAFRVVPNAGLLELANYFLQPLTLVVVIKDTSSRKRCAPRDL
Ga0170824_1000003922	3300031231	Forest Soil	LEFGALLAEFLRAVRVAPNAGLFELALYFLQALMLVIVIKDTSSKSRCAPRDP
Ga0170824_1175604422	3300031231	Forest Soil	FLSQLLSAIGVAPNAGLLELALYFLQPFVFVVVIKDTSSKSRCALRDL
Ga0302323_1025288882	3300031232	Fen	DHLFEFGAFLAQILGPIRVVPDAGLLELALYFLEAFVFVVVIKDTSSKSRCAPRDL
Ga0302325_104025982	3300031234	Palsa	VLELRALLAELLRPIRVVPDAGLLEFPDYFLQTLVLVVVIKDTSSKSRYAPRDL
Ga0302324_1002287803	3300031236	Palsa	VLELRALLAELLRPIRVVPDAGLFEFANYFLQTLILVVVIKDTSSKSRYAPRDL
Ga0302324_1008208261	3300031236	Palsa	ELGAFLPELLSSIRIVPDTGLFELALYFLQALLLVVVIKDTPSKSRRAPRDL
Ga0310686_1192841102	3300031708	Soil	LLELGAFPAQLLSAIRVVPDAGLLELALYFLQTFEFVVVIKDTSSKSRCAPRDL
Ga0307476_106231271	3300031715	Hardwood Forest Soil	AQAARQLIQAAHHLLELGALLAKLLRTIRVVPNAGLFELANYFLQPLVLVVVIKDTSSKSRYAPRDL
Ga0302319_113303282	3300031788	Bog	DHMFQLGAFLAELLSSIRVVPDPGLLELARYFLQALVFVVVIKDTSSKSRCAPRDL
Ga0306926_113233242	3300031954	Soil	LFEFGAFLPELLCAIGIVPDAGLLELAGYFLETLVLVFVIKDTSSRNRCVPRDL
Ga0348332_111285131	3300032515	Plant Litter	LLELRAFLPQLLGALWVVPDAGLLQLALYFLKAFELVVVIKVTSSKSRCAPRDL
Ga0316212_10203341	3300033547	Roots	PVQTPDDLLQLGALLPEFLGALRVVPNAGLLELALYFLQPLVLVVVIKDTSSKSRCAPRD
Ga0371487_0389534_250_414	3300033982	Peat Soil	VFQFGAFLAELLSPIRVIPDAGLLELAGYFLQAFVLVVVIKDTSSRSRYAPRDL
Ga0370492_0263503_198_362	3300034282	Untreated Peat Soil	VFQLGAFLAELLGSIRVVPDPGLLELARYFLQALVLVVVIKDTSSKSRCAPRDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071908

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences