Metagenome Family F071988

Basic Information
Family ID	F071988
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	50 residues
Representative Sequence	IVEAVEPFKLHPTSMSYIYKVFEHLEQLWMGIWQHTHTVTTTEVSPD
Number of Associated Samples	37
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.36 %
% of genes near scaffold ends (potentially truncated)	79.34 %
% of genes from short scaffolds (< 2000 bps)	85.95 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (94.215 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (38.017 % of family members)
Environment Ontology (ENVO)	Unclassified (39.669 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (45.455 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84 12199913783 22199942536 3B570J29032_1094683151 4B570J40625_1009971071 5Ga0068877_107652843 6Ga0068876_103454261 7Ga0074478_12984771 8Ga0102853_10965181 9Ga0102818_10307281 10Ga0102912_12066331 11Ga0105735_10703331 12Ga0105735_11132741 13Ga0105735_11300291 14Ga0105735_11434853 15Ga0105736_11040142 16Ga0105736_11559752 17Ga0105736_11666991 18Ga0105738_10605522 19Ga0105738_11100221 20Ga0114348_11038371 21Ga0114348_11331561 22Ga0114348_11354551 23Ga0114348_11369671 24Ga0114359_12604132 25Ga0114359_13434491 26Ga0114359_13434492 27Ga0114349_10111153 28Ga0114349_10648502 29Ga0114349_10652631 30Ga0114349_10693721 31Ga0114349_10977352 32Ga0114349_11048541 33Ga0114349_11707493 34Ga0114349_11788701 35Ga0114349_11904271 36Ga0114349_11945993 37Ga0114349_12002933 38Ga0114349_12034002 39Ga0114349_12070022 40Ga0114349_12077301 41Ga0114349_12132471 42Ga0114349_12238241 43Ga0114349_12542061 44Ga0114349_12712441 45Ga0114353_12802291 46Ga0114353_12802292 47Ga0114361_10075047 48Ga0114361_10194963 49Ga0114361_10273581 50Ga0114361_10288061 51Ga0114361_10399581 52Ga0114361_10405985 53Ga0114361_10606212 54Ga0114361_10675881 55Ga0114361_10795851 56Ga0114361_10918642 57Ga0114361_10944091 58Ga0114361_11284261 59Ga0114361_11338551 60Ga0114361_11433011 61Ga0114361_11619801 62Ga0114361_11753451 63Ga0114361_11755751 64Ga0114361_11972551 65Ga0114361_12767022 66Ga0102816_12948521 67Ga0129318_102679211 68Ga0207193_10744943 69Ga0207193_11123662 70Ga0207193_13834871 71Ga0207193_16924862 72Ga0208088_10296602 73Ga0208088_10296603 74Ga0244777_108818493 75Ga0208932_10907843 76Ga0209985_103366873 77Ga0209450_107650461 78Ga0315905_110192083 79Ga0315905_112692512 80Ga0315902_113091203 81Ga0334989_0019226_1_135 82Ga0334989_0028465_126_302 83Ga0334989_0075492_93_242 84Ga0334989_0155664_205_363 85Ga0334989_0167534_1026_1163 86Ga0334989_0236504_3_143 87Ga0334989_0267565_2_166 88Ga0334989_0296092_1_177 89Ga0334989_0359331_585_758 90Ga0334989_0385485_1_162 91Ga0334989_0412504_3_125 92Ga0334989_0460066_469_639 93Ga0334989_0536899_462_572 94Ga0334989_0582037_3_200 95Ga0335005_0640935_1_168 96Ga0335023_0162263_1099_1266 97Ga0335001_0157340_1126_1281 98Ga0335001_0217664_3_128 99Ga0335001_0250590_782_976 100Ga0335001_0335646_3_173 101Ga0335001_0406273_2_160 102Ga0335001_0527137_3_167 103Ga0335001_0594227_3_122 104Ga0335001_0659981_1_180 105Ga0335001_0708227_369_524 106Ga0335001_0717291_377_520 107Ga0334990_0024105_140_286 108Ga0335022_0221309_935_1120 109Ga0335022_0285721_214_387 110Ga0335022_0505531_496_627 111Ga0335037_0743762_1_192 112Ga0335017_0040973_745_888 113Ga0335017_0040973_949_1104 114Ga0335017_0218188_915_1088 115Ga0335017_0382442_2_130 116Ga0335017_0406766_597_734 117Ga0335017_0709828_385_510 118Ga0335061_0083441_3_152 119Ga0335061_0402517_3_185 120Ga0335061_0439253_1_129 121Ga0335039_0593854_1_153
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84 12199913783 2B570J29032_1094683151 3Ga0074478_12984771 4Ga0102853_10965181 5Ga0102818_10307281 6Ga0105735_10703331 7Ga0105736_11040142 8Ga0105738_11100221 9Ga0114349_10648502 10Ga0114349_10652631 11Ga0114349_12070022 12Ga0114361_11284261 13Ga0114361_11338551 14Ga0114361_11433011 15Ga0114361_11755751 16Ga0207193_10744943 17Ga0207193_11123662 18Ga0207193_16924862 19Ga0208088_10296603 20Ga0209450_107650461 21Ga0334989_0019226_1_135 22Ga0334989_0028465_126_302 23Ga0334989_0236504_3_143 24Ga0334989_0412504_3_125 25Ga0334989_0460066_469_639 26Ga0334989_0582037_3_200 27Ga0335023_0162263_1099_1266 28Ga0335001_0157340_1126_1281 29Ga0335001_0250590_782_976 30Ga0335001_0406273_2_160 31Ga0335001_0527137_3_167 32Ga0335001_0659981_1_180 33Ga0335001_0708227_369_524 34Ga0334990_0024105_140_286 35Ga0335022_0221309_935_1120 36Ga0335037_0743762_1_192 37Ga0335017_0040973_745_888 38Ga0335017_0709828_385_510
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1Ga0105736_11666991 22199913783 3B570J40625_1009971071 4Ga0068876_103454261 5Ga0074478_12984771 6Ga0102818_10307281 7Ga0105735_11132741 8Ga0105736_11040142 9Ga0114348_11331561 10Ga0114359_13434491 11Ga0114349_10111153 12Ga0114349_10648502 13Ga0114349_10652631 14Ga0114349_12034002 15Ga0114361_10405985 16Ga0114361_10944091 17Ga0114361_11284261 18Ga0114361_11338551 19Ga0114361_11433011 20Ga0114361_11619801 21Ga0114361_11755751 22Ga0102816_12948521 23Ga0129318_102679211 24Ga0207193_10744943 25Ga0207193_11123662 26Ga0207193_13834871 27Ga0207193_16924862 28Ga0208088_10296603 29Ga0244777_108818493 30Ga0209450_107650461 31Ga0315905_112692512 32Ga0315902_113091203 33Ga0334989_0075492_93_242 34Ga0334989_0167534_1026_1163 35Ga0334989_0236504_3_143 36Ga0334989_0296092_1_177 37Ga0334989_0359331_585_758 38Ga0334989_0460066_469_639 39Ga0334989_0582037_3_200 40Ga0335023_0162263_1099_1266 41Ga0335001_0157340_1126_1281 42Ga0335001_0250590_782_976 43Ga0335001_0335646_3_173 44Ga0335001_0406273_2_160 45Ga0335001_0527137_3_167 46Ga0335001_0708227_369_524 47Ga0334990_0024105_140_286 48Ga0335022_0221309_935_1120 49Ga0335022_0505531_496_627 50Ga0335037_0743762_1_192 51Ga0335017_0040973_745_888 52Ga0335017_0040973_949_1104 53Ga0335017_0709828_385_510 54Ga0335061_0083441_3_152 55Ga0335061_0402517_3_185
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.00% β-sheet: 0.00% Coil/Unstructured: 56.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	5.79 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	4.13 %
Unclassified	root	N/A	94.21 %
Viruses	superkingdom	All Organisms → Viruses	1.65 %

Name	Rank	Taxonomy	Distribution
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.13 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Haptista	clade	All Organisms → cellular organisms → Eukaryota → Haptista	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	3.31 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	3.31 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	3.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3.31 %
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.83 %
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Mediophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae	2.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Biddulphiophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae	2.48 %
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	0.83 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Eupodiscales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales	0.83 %
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	0.83 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Odontellaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	0.83 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Pseudictyota	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Pseudictyota	0.83 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	0.83 %
Unclassified	root	N/A	94.21 %

Name	Rank	Taxonomy	Distribution
Haptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Pseudictyota dubia	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Pseudictyota → Pseudictyota dubia	0.83 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	0.83 %
Unclassified	root	N/A	94.21 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352003\|2199765326	Not Available	717	Open in IMG/M
2199352003\|2199785623	Not Available	1303	Open in IMG/M
3300002408\|B570J29032_109468315	Not Available	787	Open in IMG/M
3300002835\|B570J40625_100997107	Not Available	716	Open in IMG/M
3300005525\|Ga0068877_10765284	Not Available	512	Open in IMG/M
3300005527\|Ga0068876_10345426	Not Available	837	Open in IMG/M
3300005827\|Ga0074478_1298477	Not Available	890	Open in IMG/M
3300007543\|Ga0102853_1096518	Not Available	553	Open in IMG/M
3300007552\|Ga0102818_1030728	All Organisms → Viruses → Predicted Viral	1062	Open in IMG/M
3300007649\|Ga0102912_1206633	Not Available	563	Open in IMG/M

Showing 1 to 10 of 112 entries

Previous1 2 3 4 5…12Next

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	85.95%
Marine	Environmental → Aquatic → Marine	13.22%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	8.26%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.96%
Lake	Environmental → Aquatic → Freshwater → Lake	75.21%
Lentic	Environmental → Aquatic → Freshwater → Lentic	8.26%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.48%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.31%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	71.90%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	8.26%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	4.96%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.96%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	7.44%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	33.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.48%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.48%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.48%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	2.48%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	3.31%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.83%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.83%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	38.02%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.83%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352003	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300007543	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3	Environmental	Open in IMG/M
3300007552	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571	Environmental	Open in IMG/M
3300007649	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3	Environmental	Open in IMG/M
3300007860	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372A_3um	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2199913783	2199352003	Freshwater	MVEAVEPFKLHPTSMSYLYKVFEHLKQLWMSIWQHTHTVTTTDV
2199942536	2199352003	Freshwater	MVETVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTITTTE
B570J29032_1094683151	3300002408	Freshwater	MVEAVEPFKLHSVSMLYAYIVLEHFLLLWMGLWLHTHIVTTTDVSPDLGELK*
B570J40625_1009971071	3300002835	Freshwater	MVEAVEPFKLHSVSMLYAYIVLEHFLLLWMGLWLHTHIVTTTEVSPDLGELAEI
Ga0068877_107652843	3300005525	Freshwater Lake	MVEAVEPFKLHPTSMSYIYKVFEHFKQLWMGIWQHTH
Ga0068876_103454261	3300005527	Freshwater Lake	MVEAVEPIKLHPLYILYIYKVFEHLKQLWMVIWQHTHTVTTTE
Ga0074478_12984771	3300005827	Sediment (Intertidal)	IIETVEPFKLHPTSMSYIYKVFTNLNQLWMGIWQHIHTITTTEVSPDLGEFTDFPGRKNLLRL*
Ga0102853_10965181	3300007543	Estuarine	MVEAVEPFKLHPTSMSYIYKVFKHLKQLWMGIWQHTHTVTTTEVSPDLGELAEIID
Ga0102818_10307281	3300007552	Estuarine	MWKLSHYAIIEAVEPFKLHHTSMSYIYKVFEHLKQLWMFIWQHIHTVTTTEVSQ
Ga0102912_12066331	3300007649	Estuarine	AIVEAVEPFKLHPTSMSYIYKVFEHLEQLWMDIWQHTHTVTTTDVSPNSGELLLKS*
Ga0105735_10703331	3300007860	Estuary Water	MVEAVEPFKLHPTSMPYIYKVFEHLKQLWMGIWQHIYAI
Ga0105735_11132741	3300007860	Estuary Water	MVEAVEPFKLHPTSMSHIYKVFEHLKQLWMGIWQHTHTLTTTELSPDLGE
Ga0105735_11300291	3300007860	Estuary Water	MVEAVEPFKLHPLYMSYIYKVFEHLKQLWMVIWQHTHTV
Ga0105735_11434853	3300007860	Estuary Water	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWIGIWQHIHAIT
Ga0105736_11040142	3300007861	Estuary Water	VMQVYKQYHLAIVEAVEPFKLHPTSMSYLYEVFEHLQLLGMGIWLHTHTVSTTTDVSPDLG*
Ga0105736_11559752	3300007861	Estuary Water	MVESVEPFKLHPTSMSYIYKVFEHLEQLWMGIWQHTHTVTTTEVSPVLG
Ga0105736_11666991	3300007861	Estuary Water	IVEAVEPFKLHPTSMSYIYKVFEHLEQLWMGIWQHTHTVTTTEVSPD*
Ga0105738_10605522	3300007953	Estuary Water	MLVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTT
Ga0105738_11100221	3300007953	Estuary Water	YAINEAVEPFKLHPISMSYIYYVFEHLTQLWMGIWQHIHTVTTTDVSPDLES*
Ga0114348_11038371	3300008115	Freshwater, Plankton	MVEAVEPFKLQPTSMSYIYKVFEHLKQLRMGIWQHT
Ga0114348_11331561	3300008115	Freshwater, Plankton	MWKLSHYAIIEAVEHFKLHPTSMSYYMVFEHLKQLWMGIWQHIHTVTTTEVSPDLGEFTEIL
Ga0114348_11354551	3300008115	Freshwater, Plankton	EAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPDLGEILKL*
Ga0114348_11369671	3300008115	Freshwater, Plankton	MVETELPFKLHPTSMSYIYKVFEHLKQLRMGIWQHTHTVTTTYV
Ga0114359_12604132	3300008122	Freshwater, Plankton	YAFVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPDLESLLKS*
Ga0114359_13434491	3300008122	Freshwater, Plankton	MVETVEPFKLHPTSMSYIYKVFEHLKQLRMGIWQHTHTVTTTYVFPD*
Ga0114359_13434492	3300008122	Freshwater, Plankton	MVETVEPFKLHPTSMSYIYKVFEHLKQLRMGIWQHTH
Ga0114349_10111153	3300008263	Freshwater, Plankton	MVEAVEPFKLHPTSMSYIYKVFGHLKQLWMGIWHHTHTVTTTEASPDLGEFTEIRQ*
Ga0114349_10648502	3300008263	Freshwater, Plankton	MVEAVEPFKLHSTSMSYIYKVFEHLKQLWIGIWQLNITITTTEVSPDF*
Ga0114349_10652631	3300008263	Freshwater, Plankton	MVEAVKPFKLHPTFMSYLFEVFEHLQLLWMGIWLHTHTVSTTTD
Ga0114349_10693721	3300008263	Freshwater, Plankton	MVETVEPFKLYPTSMSYIYKVFEHLKQLWMGIWQHTHT
Ga0114349_10977352	3300008263	Freshwater, Plankton	MVEAVEPFKLYPTSMSYIYNVFEHLKQLWMGIWQHTHTVTTTEVSPDLRECPRRLLRH*
Ga0114349_11048541	3300008263	Freshwater, Plankton	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTV
Ga0114349_11707493	3300008263	Freshwater, Plankton	AVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHIHTVTTTDMSPDLGKYSEII*
Ga0114349_11788701	3300008263	Freshwater, Plankton	AVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHKVTTTEVSPDLGEFI*
Ga0114349_11904271	3300008263	Freshwater, Plankton	VWTRSHYAIVEAVEPFKLHPISMSYIYKVFEYFNQLWMGIWQHTHTVTTTEVSPDL
Ga0114349_11945993	3300008263	Freshwater, Plankton	MVEAVEPFKLHPTSMSYIYYAFEHLKQLWMGIWQHTHT
Ga0114349_12002933	3300008263	Freshwater, Plankton	MWKLSHYAIVEAVEPFKLHPTSMSYIYKVFEHLEQLWMGIWQHIHTVATTDVSPDL
Ga0114349_12034002	3300008263	Freshwater, Plankton	MVESGEPFKLHPTSMSYIYKVFDHLKQLWMGIWRHIHTVTTT
Ga0114349_12070022	3300008263	Freshwater, Plankton	MMLMSKLSQYTINEAVKPFKLHPISMSYIYYVFEHLTQLWMGIWQHIHTVTTTDVS
Ga0114349_12077301	3300008263	Freshwater, Plankton	YAIVEAVELFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHNVTTTEVSPD*
Ga0114349_12132471	3300008263	Freshwater, Plankton	YPMVEAVEPFKLHPTSMSYIYKVVEHLKQLWMGIWQHTHTVTTTEVSPDLESWLKS*
Ga0114349_12238241	3300008263	Freshwater, Plankton	YAIVEAVEPFKLHPTSMSYIYEVFEHLKQLWMGIWQRTHTVTTTDVSPDLGELLKS*
Ga0114349_12542061	3300008263	Freshwater, Plankton	MVEAVEPFKLHPTSMSYIYKVCEHLKQLWMGIWQH
Ga0114349_12712441	3300008263	Freshwater, Plankton	MVEAVEPFKLYPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPDLGKFTEILDD
Ga0114353_12802291	3300008264	Freshwater, Plankton	MVETVEPFKLHPTSMSYIYKVFEHLKQLRMGIWQHTHTV
Ga0114353_12802292	3300008264	Freshwater, Plankton	VETVEPFKLHPTSMSYIYKVFEHLKQLRMGIWQHTHTVTTT*
Ga0114361_10075047	3300008265	Freshwater, Plankton	MVEAVEPFKLHPTSMLYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPD*
Ga0114361_10194963	3300008265	Freshwater, Plankton	MVEAVEPFKLYPTSMSYIYKVFEHLKQLWMGIWQHTHTV
Ga0114361_10273581	3300008265	Freshwater, Plankton	MVEAVEPFKLYPTSMTYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPDLGELAE
Ga0114361_10288061	3300008265	Freshwater, Plankton	MWKSSHYTITEVVEPLKLHPTSMSYIYKVFEHLKQLWMGIWQHIHTVTTTDVSPDL
Ga0114361_10399581	3300008265	Freshwater, Plankton	IVEAVELFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVATTVVSPD*
Ga0114361_10405985	3300008265	Freshwater, Plankton	MVEAAEPFKLHPTSISYIYKVFEHLRQLWMGIWQHIHTVTTTEVSPDLGEL
Ga0114361_10606212	3300008265	Freshwater, Plankton	AVELFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHNVTTTEVSPD*
Ga0114361_10675881	3300008265	Freshwater, Plankton	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTTE
Ga0114361_10795851	3300008265	Freshwater, Plankton	MVEAVEPFKLHLTSMSYIYKVFEHLNQLWMGIWHHIHTVTT
Ga0114361_10918642	3300008265	Freshwater, Plankton	VEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTTKVSPDFGEFTEILEMM*
Ga0114361_10944091	3300008265	Freshwater, Plankton	YAIVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHIHSVATTEVCPDLGKFSEII*
Ga0114361_11284261	3300008265	Freshwater, Plankton	MVEAVEPFKLYPKSMSYIYQVFENLKQLWVFIWQHTHTITTIKVSPDLGKFTEI*
Ga0114361_11338551	3300008265	Freshwater, Plankton	AVEPFKLHPTSMSYIYKVFDDLKQLWMGIWQHTHTVATTEVSPY*
Ga0114361_11433011	3300008265	Freshwater, Plankton	MCGNDPHYAIVETVEPLKLHPISMSLIYKVFEHLKQLRMGIWQHIHTVTTT*
Ga0114361_11619801	3300008265	Freshwater, Plankton	SHYAIIEAVEPFKLYPTSMSYIYKVFEHLKQLWMGIWLHTHTVTTTELSPDLGELADPR*
Ga0114361_11753451	3300008265	Freshwater, Plankton	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWIGIWQHTH
Ga0114361_11755751	3300008265	Freshwater, Plankton	MRKLSHYTIVEPVEPFKLHPTSMSHIYKVFEHLKQLLMGILQHTHTVTTTDVSPDLGEFA
Ga0114361_11972551	3300008265	Freshwater, Plankton	SHYAIVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQDTHTVTTTELCPDLGALA*
Ga0114361_12767022	3300008265	Freshwater, Plankton	MWKLSHCTIVEGVEPFKLHPTSMSYIYKVFEHLKQLWMSIWQHTHTVTTTEVSPDLGEFT
Ga0102816_12948521	3300008999	Estuarine	VEAVEPFKLHPTSMSYIYYMFEHRKQLWMGIWQHIHTVATTEVSPDLGKSLLKS*
Ga0129318_102679211	3300011009	Freshwater To Marine Saline Gradient	MQECKPYHYAIVEAVEPFKLHITSMSYLYEVVFEHLQLLGMGIWMHIHSVTTTDVSPDL
Ga0207193_10744943	3300020048	Freshwater Lake Sediment	MVEAVEPFKLHSTSISYKVLQYLHLLWMVIWLHTHTLSTTDLSPDLGELAKIVDNVR
Ga0207193_11123662	3300020048	Freshwater Lake Sediment	MVETVEPFKLHPTSIPYTYNKIEHLHLLWMGIWRHTHTGTTTDLFPDLEELAETLGNVSV
Ga0207193_13834871	3300020048	Freshwater Lake Sediment	AVEPFQLHLTSMSYIYKVCDHLEQLWMGIWQRTHTVTTTDVSPDLGELAR
Ga0207193_16924862	3300020048	Freshwater Lake Sediment	MIEAVEPFKLHPLSISYIYMVIEHLHLLWMGIWRHTHTATTMDVSP
Ga0208088_10296602	3300020505	Freshwater	MVEAVEPFKLHSVSMLYAYIVLEHFLLLWMGLWLHTHIVTTTEVSPDLGELK
Ga0208088_10296603	3300020505	Freshwater	MVEAVEPFKLHFTSMTYIHMVLEHLHLLWIGIWLHTHTTTTTDVSPNLGE
Ga0244777_108818493	3300024343	Estuarine	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHIHAITTTEVFPDLR
Ga0208932_10907843	3300027256	Estuarine	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHIHTITTTVLSPDLGE
Ga0209985_103366873	3300027806	Freshwater Lake	MVEAVEPFKLHPTSMSYIYKVFEHFKQLWMGIWQHTHTD
Ga0209450_107650461	3300027885	Freshwater Lake Sediment	HYAIIEAVEPFKLHPTSMSYIYKVFEHLEQLWMGIWQHTHTIASFGRVC
Ga0315905_110192083	3300032092	Freshwater	MVEAVEPFKLHPTSMSYIYKVFEHFKQLWMGIWQH
Ga0315905_112692512	3300032092	Freshwater	MVEAVEPFKLQCTSMSYIYKVFEHLKQMWMDIWQHTHTVTSTVVSPDL
Ga0315902_113091203	3300032093	Freshwater	MVEAVEPFKLHPTSMSYIYKVFEHLKQLWMVIWQHIHIVNTKEVSP
Ga0334989_0019226_1_135	3300033984	Freshwater	MVEAVEPFKLHPTSMSYKYEVFDHLQLLGMGIWQHTHSVIITYIS
Ga0334989_0028465_126_302	3300033984	Freshwater	MVEAVEPFKLYSTSMSYLYEVFEHLQLLGMGIWMHIHSVTTTDISPDLGEFAESLGDE
Ga0334989_0075492_93_242	3300033984	Freshwater	MVEAVELFKLHPTSMSYKYEVFDHLQLLGMGIRLHTHSVIITDISPDLG
Ga0334989_0155664_205_363	3300033984	Freshwater	MIQYAIVEAVEPFKLHPTSMSYIYKVFEHLEQLWMGIWQHTHTVATTEVSPD
Ga0334989_0167534_1026_1163	3300033984	Freshwater	MVEAVEPFKLHPTFMSYKYEVFEHHQMLGMGIWLHTRSIIITDVS
Ga0334989_0236504_3_143	3300033984	Freshwater	MQVCKPCHYAVVEAVEPFKLHPRFMSYKYDVFEHLQLLCIDIWLHTH
Ga0334989_0267565_2_166	3300033984	Freshwater	MSKLSQYAITEAVEPFRLHPTSMSYIYKVFEHLKQLWMGIWQHTHTVTTTEVSPD
Ga0334989_0296092_1_177	3300033984	Freshwater	YQYAINEAVEPFKLHPISMSYIYYVFEHLTQLWRGIWQHIHTATTTGVSPDLESWLKS
Ga0334989_0359331_585_758	3300033984	Freshwater	MYNQYHLAMVEAVEPFKMHPTSMSYLYEVFEHLQLLLWMGIWLHTHTVTTTDVSPDLG
Ga0334989_0385485_1_162	3300033984	Freshwater	MSKLSQYAINEAVEPFKLHPTSMLYIYKVFEHLKQLWMGIWQHTHTVTTTDVSP
Ga0334989_0412504_3_125	3300033984	Freshwater	WHITPYAIVEAVEPFKLHPTSMSYIYMVFEHLKQLWMGKW
Ga0334989_0460066_469_639	3300033984	Freshwater	MQDCKPYHFAIVEAVEPFKQHPTSMSYIYEVFEHLQLLGMGIWMHIHSVTNTDVSPN
Ga0334989_0536899_462_572	3300033984	Freshwater	SHYAIVEAVEPFKLHPTSMSYIYMVFEHLKQLWMGI
Ga0334989_0582037_3_200	3300033984	Freshwater	YHHRRIPRFGRIVEAVEPFKLHPTSMSHIYKVFEHLKQLWMGICQHIRTVTTTDVSPDLVELLRL
Ga0335005_0640935_1_168	3300034022	Freshwater	EAVEPFKLHPTSMSYIYKVFEHLKQLWMGIWQHNHTVITTAVSPDLGEFAEIQNN
Ga0335023_0162263_1099_1266	3300034050	Freshwater	GNDPIEAVEPFKLHPTSMSYIHKVFEHLKQLWIGIWQHIHTVTTTDVFPRFGRAG
Ga0335001_0157340_1126_1281	3300034064	Freshwater	HYVLAEAVEPFKLHPMSMSCIYEVFEHLLRLWMGIWLHIHIVTTIDTFPDL
Ga0335001_0217664_3_128	3300034064	Freshwater	MVEAVEPFKMHSISMSYLYEVFEHLQLLWMGIWLHTHTVTTT
Ga0335001_0250590_782_976	3300034064	Freshwater	MQVCKPCHFALVEDVEPFKLPLMSMSYIYEVFEPLLRLWMGIWLHTHTFTTTDTSPDLGKLAEFH
Ga0335001_0335646_3_173	3300034064	Freshwater	MITEAVEPFKLHPTSMSYIYEVFEHLKQFWMGIWQHTHTITTTEVSPDLGEFAEILD
Ga0335001_0406273_2_160	3300034064	Freshwater	CYYALVEAVEPFKLHPLSMSYIHKVFEHLLRYWMGIWLLTYTFTTTAASPDL
Ga0335001_0527137_3_167	3300034064	Freshwater	MQLYKPCHYALVEDVEPCKLHPMSMSYIYEVFDCLLRLWMGIWHHTHPITTLLWI
Ga0335001_0594227_3_122	3300034064	Freshwater	MVEAVEPFKLHPTFMSYKYEVFEHHQMLGMGIWLHTHSII
Ga0335001_0659981_1_180	3300034064	Freshwater	MVEAVEPFKMHLTSMSYLYEVFEHLHLLWMGIWLHTHTVSTTTNVSPDLGELAEILGDAS
Ga0335001_0708227_369_524	3300034064	Freshwater	TLIEAVEPFKLHPLSMSYIHKVFEHFLRMWIGIWLHTHTVTTTDTSPDLGK
Ga0335001_0717291_377_520	3300034064	Freshwater	MYKQYHLAIVEAVEPFKHHPTSMSYLYEVFEHLQLLGMGIWLHTHTVS
Ga0334990_0024105_140_286	3300034068	Freshwater	MVELGKPFQLHLTAMLYIYKVFEHLHILMMSIWGYTHTVTTTDISPEL
Ga0335022_0221309_935_1120	3300034095	Freshwater	MSVWKWSHYAIVEAVEPFKLHPTSMLYIYKVFEHLKQLCMGIWRHIHSVTTTEVSPDLGELA
Ga0335022_0285721_214_387	3300034095	Freshwater	MVEAVEPFKLHITSMSFLYEVFEHLQLLGMGIWMHIHSVTTTDVSPDLGELMMSLMD
Ga0335022_0505531_496_627	3300034095	Freshwater	MVETVEPFKLHPTSMSYLYEVFEHLKLLVMGIWMHIHSVIITDI
Ga0335037_0743762_1_192	3300034107	Freshwater	GWNRSHYAIVDTVEPFKVHPTSMSYIYKVFEHLKQLWMGTWQHIHTVTTTFVSPDLGKFSEII
Ga0335017_0040973_745_888	3300034167	Freshwater	MVEAVEPFILHPTSMSYIYKVLEHLQLLWMGIWLHTHTIKTSNVYPD
Ga0335017_0040973_949_1104	3300034167	Freshwater	MHYAMVEAVEPFKLHPTSMSYIYKVFEHLQLLWMGIWLHTHNITTTNISPN
Ga0335017_0218188_915_1088	3300034167	Freshwater	MWTRSHYAIVEAVEPFKLHLTSMSYIYKVFEHLKQLWMGIWWHIHSVTTTEVSPDLGE
Ga0335017_0382442_2_130	3300034167	Freshwater	IVEDVESFKLHPTSRSYIYKVFEHLKQLWMGIWQHTHTVTTT
Ga0335017_0406766_597_734	3300034167	Freshwater	EAVEPFKLHPTSMSYIYKVFEHLEQLLMGIWQHTHTVTTTEVSPD
Ga0335017_0709828_385_510	3300034167	Freshwater	MVEAVEPFKLHPTSMSYKCKVFEYLQLLGMGIWMYIHSVTTT
Ga0335061_0083441_3_152	3300034168	Freshwater	MVEAVESFKLHRTFMSYLYEVFEHCQLVWMGIWLHTHTVSTTTDVSPDLG
Ga0335061_0402517_3_185	3300034168	Freshwater	SHYTITEAVEPFKLHLTSMSYIYKVFEHLKQLWMGIWQHIHTFTTTDVSPDLGEFAEILP
Ga0335061_0439253_1_129	3300034168	Freshwater	EPFKLHPTSMSYIYKVFEHLEQLWMGIWQHTHTVTTTEVSPD
Ga0335039_0593854_1_153	3300034355	Freshwater	SHYAIVEAAEPFKLHPTSMSYIYLVFEHLKQLWMGIWQHTHTVTTTEVSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071988

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences