Metagenome / Metatranscriptome Family F072005

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072005
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	67 residues
Representative Sequence	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGLSQDFQDGSRG
Number of Associated Samples	77
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	90.08 %
% of genes near scaffold ends (potentially truncated)	20.66 %
% of genes from short scaffolds (< 2000 bps)	85.95 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.504 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.851 % of family members)
Environment Ontology (ENVO)	Unclassified (52.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.851 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 33.82% β-sheet: 0.00% Coil/Unstructured: 66.18%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00072	Response_reg	10.74
PF00486	Trans_reg_C	5.79
PF04545	Sigma70_r4	4.96
PF00589	Phage_integrase	1.65
PF00005	ABC_tran	1.65
PF00248	Aldo_ket_red	1.65
PF06500	FrsA-like	0.83
PF00313	CSD	0.83
PF01757	Acyl_transf_3	0.83
PF02600	DsbB	0.83
PF13649	Methyltransf_25	0.83
PF02518	HATPase_c	0.83
PF01527	HTH_Tnp_1	0.83
PF00873	ACR_tran	0.83
PF01436	NHL	0.83
PF03649	UPF0014	0.83
PF13586	DDE_Tnp_1_2	0.83
PF12770	CHAT	0.83
PF06537	DHOR	0.83
PF01850	PIN	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0390	ABC-type iron transport system FetAB, permease component	Inorganic ion transport and metabolism [P]	0.83
COG1495	Disulfide bond formation protein DsbB	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
All Organisms	root	All Organisms	40.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
cellular organisms	root	All Organisms → cellular organisms	40.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.40 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.97 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.65 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.83 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	17.36 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.65 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.53 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.65 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.53 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.65 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.53 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.65 %
Methylocystis sp. MJC1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. MJC1	0.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002907\|JGI25613J43889_10014606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2188	Open in IMG/M
3300002907\|JGI25613J43889_10133051	Not Available	635	Open in IMG/M
3300002907\|JGI25613J43889_10199317	Not Available	536	Open in IMG/M
3300002910\|JGI25615J43890_1096639	Not Available	525	Open in IMG/M
3300002914\|JGI25617J43924_10136554	Not Available	853	Open in IMG/M
3300002914\|JGI25617J43924_10189008	Not Available	685	Open in IMG/M
3300002917\|JGI25616J43925_10129125	Not Available	1023	Open in IMG/M
3300004633\|Ga0066395_10011496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3292	Open in IMG/M
3300005332\|Ga0066388_106916746	Not Available	571	Open in IMG/M
3300007255\|Ga0099791_10019651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2895	Open in IMG/M
3300007255\|Ga0099791_10180324	Not Available	992	Open in IMG/M
3300007788\|Ga0099795_10179803	Not Available	883	Open in IMG/M
3300009038\|Ga0099829_10185599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1676	Open in IMG/M
3300009038\|Ga0099829_10917848	Not Available	726	Open in IMG/M
3300009088\|Ga0099830_10836791	Not Available	760	Open in IMG/M
3300009089\|Ga0099828_10922779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	779	Open in IMG/M
3300009090\|Ga0099827_10310862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1335	Open in IMG/M
3300009143\|Ga0099792_10095953	Not Available	1548	Open in IMG/M
3300009143\|Ga0099792_10867281	Not Available	595	Open in IMG/M
3300009143\|Ga0099792_11050700	Not Available	546	Open in IMG/M
3300009792\|Ga0126374_10147768	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300009792\|Ga0126374_11383850	Not Available	572	Open in IMG/M
3300010159\|Ga0099796_10181040	All Organisms → cellular organisms → Bacteria → Proteobacteria	846	Open in IMG/M
3300010159\|Ga0099796_10379449	Not Available	615	Open in IMG/M
3300010361\|Ga0126378_10785743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1062	Open in IMG/M
3300010366\|Ga0126379_10018536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5156	Open in IMG/M
3300011269\|Ga0137392_10160562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1819	Open in IMG/M
3300011269\|Ga0137392_10494635	Not Available	1016	Open in IMG/M
3300011269\|Ga0137392_10971812	Not Available	698	Open in IMG/M
3300011271\|Ga0137393_10470298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1078	Open in IMG/M
3300011271\|Ga0137393_11302065	Not Available	615	Open in IMG/M
3300012096\|Ga0137389_10147891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1920	Open in IMG/M
3300012189\|Ga0137388_10274847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1539	Open in IMG/M
3300012189\|Ga0137388_10426685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1229	Open in IMG/M
3300012189\|Ga0137388_11473272	Not Available	618	Open in IMG/M
3300012202\|Ga0137363_10074986	Not Available	2502	Open in IMG/M
3300012202\|Ga0137363_11071112	Not Available	685	Open in IMG/M
3300012203\|Ga0137399_10210648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1581	Open in IMG/M
3300012203\|Ga0137399_10895623	Not Available	747	Open in IMG/M
3300012205\|Ga0137362_10411112	Not Available	1172	Open in IMG/M
3300012205\|Ga0137362_10421280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1156	Open in IMG/M
3300012361\|Ga0137360_10433348	Not Available	1112	Open in IMG/M
3300012362\|Ga0137361_10005768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8389	Open in IMG/M
3300012362\|Ga0137361_11079264	Not Available	723	Open in IMG/M
3300012362\|Ga0137361_11297888	Not Available	652	Open in IMG/M
3300012363\|Ga0137390_10270010	Not Available	1685	Open in IMG/M
3300012363\|Ga0137390_10477942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1221	Open in IMG/M
3300012363\|Ga0137390_10675383	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300012683\|Ga0137398_10129121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1622	Open in IMG/M
3300012683\|Ga0137398_10345939	Not Available	1006	Open in IMG/M
3300012683\|Ga0137398_10625136	Not Available	746	Open in IMG/M
3300012683\|Ga0137398_10966087	Not Available	592	Open in IMG/M
3300012685\|Ga0137397_10271749	Not Available	1263	Open in IMG/M
3300012917\|Ga0137395_10292841	Not Available	1152	Open in IMG/M
3300012917\|Ga0137395_11274563	Not Available	509	Open in IMG/M
3300012918\|Ga0137396_10635904	Not Available	789	Open in IMG/M
3300012922\|Ga0137394_10366482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1229	Open in IMG/M
3300012922\|Ga0137394_10437312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1114	Open in IMG/M
3300012923\|Ga0137359_10096734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2605	Open in IMG/M
3300012923\|Ga0137359_10366750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1280	Open in IMG/M
3300012923\|Ga0137359_11414985	Not Available	583	Open in IMG/M
3300012924\|Ga0137413_11526229	Not Available	544	Open in IMG/M
3300012924\|Ga0137413_11763974	Not Available	510	Open in IMG/M
3300012925\|Ga0137419_10645268	Not Available	854	Open in IMG/M
3300012925\|Ga0137419_10789552	Not Available	776	Open in IMG/M
3300012925\|Ga0137419_11099601	Not Available	662	Open in IMG/M
3300012944\|Ga0137410_10112406	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300012944\|Ga0137410_10293730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1285	Open in IMG/M
3300012944\|Ga0137410_10416459	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300012944\|Ga0137410_10444384	Not Available	1052	Open in IMG/M
3300015054\|Ga0137420_1110958	Not Available	549	Open in IMG/M
3300015241\|Ga0137418_10001931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19004	Open in IMG/M
3300015245\|Ga0137409_10041317	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	4424	Open in IMG/M
3300017970\|Ga0187783_10019615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4992	Open in IMG/M
3300017970\|Ga0187783_10131931	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300020170\|Ga0179594_10349572	Not Available	561	Open in IMG/M
3300020199\|Ga0179592_10021408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2880	Open in IMG/M
3300020199\|Ga0179592_10188079	Not Available	938	Open in IMG/M
3300020199\|Ga0179592_10522974	Not Available	506	Open in IMG/M
3300020581\|Ga0210399_10249944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1478	Open in IMG/M
3300021168\|Ga0210406_10507521	Not Available	953	Open in IMG/M
3300021170\|Ga0210400_10260761	Not Available	1419	Open in IMG/M
3300021478\|Ga0210402_10527755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. MJC1	1096	Open in IMG/M
3300024288\|Ga0179589_10052915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1535	Open in IMG/M
3300026285\|Ga0209438_1048253	Not Available	1405	Open in IMG/M
3300026304\|Ga0209240_1010374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3531	Open in IMG/M
3300026304\|Ga0209240_1110151	Not Available	966	Open in IMG/M
3300026320\|Ga0209131_1009339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6109	Open in IMG/M
3300026320\|Ga0209131_1214167	Not Available	864	Open in IMG/M
3300026340\|Ga0257162_1021411	Not Available	779	Open in IMG/M
3300026340\|Ga0257162_1028845	Not Available	680	Open in IMG/M
3300026355\|Ga0257149_1000850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2717	Open in IMG/M
3300026355\|Ga0257149_1022046	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300026369\|Ga0257152_1009491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1025	Open in IMG/M
3300026377\|Ga0257171_1033256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300026467\|Ga0257154_1043563	Not Available	689	Open in IMG/M
3300026475\|Ga0257147_1081644	Not Available	501	Open in IMG/M
3300026481\|Ga0257155_1032378	Not Available	784	Open in IMG/M
3300026482\|Ga0257172_1110151	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300026490\|Ga0257153_1112825	Not Available	535	Open in IMG/M
3300026499\|Ga0257181_1087464	Not Available	544	Open in IMG/M
3300026507\|Ga0257165_1106055	Not Available	523	Open in IMG/M
3300026515\|Ga0257158_1023131	Not Available	1056	Open in IMG/M
3300026551\|Ga0209648_10209486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1479	Open in IMG/M
3300026551\|Ga0209648_10265403	Not Available	1260	Open in IMG/M
3300026551\|Ga0209648_10450729	Not Available	799	Open in IMG/M
3300026555\|Ga0179593_1185148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2650	Open in IMG/M
3300027635\|Ga0209625_1095527	Not Available	666	Open in IMG/M
3300027655\|Ga0209388_1012613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2297	Open in IMG/M
3300027663\|Ga0208990_1108769	Not Available	762	Open in IMG/M
3300027846\|Ga0209180_10150626	All Organisms → cellular organisms → Bacteria → Proteobacteria	1340	Open in IMG/M
3300027874\|Ga0209465_10065867	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1751	Open in IMG/M
3300027903\|Ga0209488_10195940	Not Available	1522	Open in IMG/M
3300027903\|Ga0209488_10886640	Not Available	626	Open in IMG/M
3300028047\|Ga0209526_10124574	Not Available	1810	Open in IMG/M
3300029636\|Ga0222749_10638597	Not Available	582	Open in IMG/M
3300031573\|Ga0310915_10664235	Not Available	737	Open in IMG/M
3300031879\|Ga0306919_10656723	Not Available	808	Open in IMG/M
3300031954\|Ga0306926_11194775	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300032174\|Ga0307470_11373219	Not Available	582	Open in IMG/M
3300032261\|Ga0306920_102656721	Not Available	685	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.39%
Loam	Environmental → Terrestrial → Soil → Loam	4.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	61.16%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.65%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25613J43889_100146062	3300002907	Grasslands Soil	MKTLITVLTLSIATATPMLAQAASWHSVQGDARGSVAPYGTIEGGPYTPDAPSPAHGFSQDFQDGSRG*
JGI25613J43889_101330511	3300002907	Grasslands Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG*
JGI25613J43889_101993172	3300002907	Grasslands Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
JGI25615J43890_10966391	3300002910	Grasslands Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAAHGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG*
JGI25617J43924_101365542	3300002914	Grasslands Soil	MKTLITVLTLSIAAATPMLAQAASWHNVQHTARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG*
JGI25617J43924_101890081	3300002914	Grasslands Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLNXDFQDGSRG*
JGI25616J43925_101291251	3300002917	Grasslands Soil	MKTLITVLILSIAAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0066395_100114962	3300004633	Tropical Forest Soil	MKTLITVVTLSTAAATPMLAQAASWHSVQEDARGFVAPFRATEGGPYTPSMPTPAYGFSQDFQDGSRG*
Ga0066388_1069167461	3300005332	Tropical Forest Soil	MKTLITVLTLSIAAATPMLAQAASRHSVQEDARFVAPFRATEGGPYTPSMPTPAHGFSQDFQDGSRG*
Ga0099791_100196514	3300007255	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAAYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0099791_101803242	3300007255	Vadose Zone Soil	MKTLITVLTLSIATATPILAQAASWHNVQNAARGSVAPDGTTEGGPYTPDMRTPAHGFSQDFQDGSRG*
Ga0099795_101798031	3300007788	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQGDARGSVAPYGTIEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0099829_101855993	3300009038	Vadose Zone Soil	MKALITVLTLSIATATPMLAQAASRHNVQNDARGSVASYGATEGGPYTPDMPTPAHGLNNDFQDGSRG*
Ga0099829_109178481	3300009038	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHGVQNAARGSVAPYGATEGGPYTPDAPTPAHGL
Ga0099830_108367912	3300009088	Vadose Zone Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0099828_109227793	3300009089	Vadose Zone Soil	RLNMKTLITVLILSIAPATPMLAQAASWHSVQDDARGSAAPYGTTEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0099827_103108621	3300009090	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0099792_100959533	3300009143	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMRTPAHGLSQDFQDGSRG*
Ga0099792_108672811	3300009143	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQDDARGSAAPYGTTEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0099792_110507001	3300009143	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQDAARGSVAPYGATEGGPYTPDMPTPAHGLSQ
Ga0126374_101477682	3300009792	Tropical Forest Soil	MKALITVLTLSIAATPMLAQAASWHSLQHAARASVAPYSATEAGPYTPDMPTPAHGFRRKLPYCRDASL*
Ga0126374_113838501	3300009792	Tropical Forest Soil	MKTLITVVTLSIAAATPMLAQAASWHSVQEDARGFVAPFRATEGGPYTPSMPTPAYGFSQDFQDGSRG*
Ga0099796_101810401	3300010159	Vadose Zone Soil	RRLNMKTLITVLTLSIVTATPMLAQAASRHNVRDDARGSVAPYSATEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0099796_103794492	3300010159	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGS
Ga0126378_107857432	3300010361	Tropical Forest Soil	VTLSIAAATPMLAQAASWHSVQEDARGFVAPFRATEGGPYTPSMPTPAYGFSQDFQDGSRG*
Ga0126379_100185363	3300010366	Tropical Forest Soil	MKTLITVVTLSIAAATPMLAQAASWHSVQEDARGFVAPFRATEGGPYRPSMPTPAYGFSQDFQDGSRG*
Ga0137392_101605623	3300011269	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQNDARGSVASYGATEGGPYTPDMPTPAHGLNNDFQDGSRG*
Ga0137392_104946352	3300011269	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQDDARGSVAPYGTIEGGPYTPDAPTPAHGLGQDFQDGSRG*
Ga0137392_109718121	3300011269	Vadose Zone Soil	MKTLITVLILSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMRTPAHGLSQDFQDGSRG*
Ga0137393_104702982	3300011271	Vadose Zone Soil	MKTLITVLTLSIATTTPMLAQAASWHSVQDDARGSVAPYGTIEGGPYTPDAPTPAHGLSQDFQDGSRG*
Ga0137393_113020651	3300011271	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASWHSVQNDARGSVASYGATEGGPYTPDMPTPAHGLNNDFQDGSRG*
Ga0137389_101478912	3300012096	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHSVQDDARGSVAPYGATEGGSYTPSISTPAHGLNHDFQDGSRG*
Ga0137388_102748471	3300012189	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAHAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLNNDFQDGSRG*
Ga0137388_104266851	3300012189	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASWQTHSVQAAARGSVAPYVATEGGPYTPDAPAPAHGFSQDFQDGSRG*
Ga0137388_114732721	3300012189	Vadose Zone Soil	IVTATPMLAQAASRHSVQDDARGSVAPYGATEGGYYTPSISIPAHGLSQDFQDGSRG*
Ga0137363_100749861	3300012202	Vadose Zone Soil	MKTLITVLTSSIVAATPMLAQAASWHSVQHAARGSVAPYGTIEGGPYTPDAPSPAHGFSQDFQDGSRG*
Ga0137363_110711122	3300012202	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVRDDARGSVASYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
Ga0137399_102106481	3300012203	Vadose Zone Soil	MKTLITLLTLSIAAATPMLAQAASWHSVQNAARGSVAAYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0137399_108956232	3300012203	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHNVQNAARGSVAADGTTEGGPYTPDMRTPAHGFSQDFQDGSRG*
Ga0137362_104111122	3300012205	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGLSQDFQDGSRG*
Ga0137362_104212802	3300012205	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQNDARGSVTSYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
Ga0137360_104333481	3300012361	Vadose Zone Soil	TLITVLTLSIVTATPMLAQAASRHNVQNDARGSVTSYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
Ga0137361_100057687	3300012362	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQGDARGSVAPYGTIEGGPYTPDAPTPAHGLSQDFQDGSRG*
Ga0137361_110792641	3300012362	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLN
Ga0137361_112978881	3300012362	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASWHSVQNDARGSVAPYGATEGGPYTPSMQTPAHGLNHDFQDGSRG*
Ga0137390_102700101	3300012363	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
Ga0137390_104779421	3300012363	Vadose Zone Soil	MKTLITVLILSIAPATPMLAQAASWHSVQHAARGSVAPYGTIEGGPYTPDAPSPAHGFSQDFQDGSRG*
Ga0137390_106753831	3300012363	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLNHDFQDGSR
Ga0137398_101291213	3300012683	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG*
Ga0137398_103459391	3300012683	Vadose Zone Soil	MKTLITVLTLSIAAATPTLAQAASWHSVQSAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0137398_106251361	3300012683	Vadose Zone Soil	MKTLITVLALSIATATPMLAQAASWQSVQDDARGSVAPYGATEGGPYTPSMQTPAQGLTHDFQDGSRG*
Ga0137398_109660871	3300012683	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHG
Ga0137397_102717492	3300012685	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMRTPAHGFSQDFQDGSRG*
Ga0137395_102928412	3300012917	Vadose Zone Soil	MKTLITVLILSIAAATPTLAQAASWHSVQSAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0137395_112745631	3300012917	Vadose Zone Soil	MKTLITVLILSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG*
Ga0137396_106359041	3300012918	Vadose Zone Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQDAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG*
Ga0137394_103664821	3300012922	Vadose Zone Soil	MKTLITVLTLSIATATPILAQAASWHSVQNAARGSVAAYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0137394_104373122	3300012922	Vadose Zone Soil	MKTLITVLTLSIATATPILAQAASWHNVQNAARGSVAADGTTEGGPYTPDMRTPAHGFSQDFQDGSRG*
Ga0137359_100967344	3300012923	Vadose Zone Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQNDARGSVTSYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
Ga0137359_103667502	3300012923	Vadose Zone Soil	MKTLITVLTLSITAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0137359_114149852	3300012923	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDHARGSVAPYSATEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0137413_115262291	3300012924	Vadose Zone Soil	MKTLITVLILSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0137413_117639741	3300012924	Vadose Zone Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSR
Ga0137419_106452681	3300012925	Vadose Zone Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG*
Ga0137419_107895522	3300012925	Vadose Zone Soil	MKTLITVLTLSITAATPMLAQAASWHNVQNAARGSVAADGTTEGGPYTPDMRTPAHGFSQDF
Ga0137419_110996011	3300012925	Vadose Zone Soil	ITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMRTPAHGLSQDFQDGSRG*
Ga0137410_101124061	3300012944	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNVARGSVAPYGATEGGPYTPDMPTPAHGLSQDF
Ga0137410_102937303	3300012944	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVTSYGATEGGPYTPDMPTPAHGLNHDFQDGSRG*
Ga0137410_104164591	3300012944	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASWHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLNHDFQDGS
Ga0137410_104443841	3300012944	Vadose Zone Soil	AATPMLAQAASWHSVQNAARGSVAAYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0137420_11109581	3300015054	Vadose Zone Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQD
Ga0137418_100019316	3300015241	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0137409_100413173	3300015245	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAGSWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG*
Ga0187783_100196156	3300017970	Tropical Peatland	MKTLITVLTLSIAAATPTLTQAASWHSHGVQAAARGSVGPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG
Ga0187783_101319312	3300017970	Tropical Peatland	MKTLIAVLTLSIAAATPVLAQAASWHSVQHAARGSVAPYSATEGGPYTPDASTPAHGFSQDFQDGSRG
Ga0179594_103495722	3300020170	Vadose Zone Soil	MKTLITVLTLSIATATPILAQAASWHNVQNAARGSVAPDGTTEGGPYTPDMRTPAHGFSQDFQDGSRG
Ga0179592_100214081	3300020199	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHNVQNAARGSVAADGTTEGGPYTPDMRTPAHGFSQDFQDGSRG
Ga0179592_101880792	3300020199	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG
Ga0179592_105229741	3300020199	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGLNHDFQDGSRG
Ga0210399_102499442	3300020581	Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG
Ga0210406_105075212	3300021168	Soil	MKTLITVLTLSIVTATPMLAQAASWQNVRDDARGSVASYGATEGGPYTPSMQTRAHGLNHDFQDGSRG
Ga0210400_102607613	3300021170	Soil	MKTLITVLTLSVVTATPMLAQAASWQNVRDDARGSVAPYGASEGGPYTPSMQTRAHGLNHDFQDGSRG
Ga0210402_105277552	3300021478	Soil	MKTVITVLTLSIAAATPTLAQAASWHSVQHAARGSIAPYGVTEGGPYTPDAPAPAHGFSQDFQDGSRG
Ga0179589_100529151	3300024288	Vadose Zone Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHGFSQDFQDGSRG
Ga0209438_10482533	3300026285	Grasslands Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAADGATEGGPYTPDMPTPAHGFSQDFQDGSRG
Ga0209240_10103743	3300026304	Grasslands Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAAHGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0209240_11101512	3300026304	Grasslands Soil	MKTLITVLTLSIVTATPMLAQAASWHSVQNDARGSVAPYGATEGGPYTPSMQTPAHGLNHDFQDGSRG
Ga0209131_10093395	3300026320	Grasslands Soil	MKTLITVLTLSIATATPMLAQAASWHSVQGDARGSVAPYGTIEGGPYTPDAPSPAHGFSQDFQDGSRG
Ga0209131_12141671	3300026320	Grasslands Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0257162_10214111	3300026340	Soil	MKTLITVLILSIAAATPTLAQAASWHSVQSAARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG
Ga0257162_10288452	3300026340	Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0257149_10008506	3300026355	Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQHAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0257149_10220462	3300026355	Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAVRGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0257152_10094911	3300026369	Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDGSRG
Ga0257171_10332562	3300026377	Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQDDARGSVASYGATEGGPYTPDMPTPAHG
Ga0257154_10435632	3300026467	Soil	MKTLITVLILSIAAATPTLAQAASWHSVQSAARGSVAPYGATEGGPYTPDMPTPAHGLSQDFQDGSRG
Ga0257147_10816441	3300026475	Soil	MKTLITVLTLSIFAATPMLAQAASWHSVQHAARGSVAPYSATEGGPYTPDAPTPAHGFSQDSQDGSRG
Ga0257155_10323782	3300026481	Soil	MKTLITVLTLSIATATPMLAQAASWHSVQDAARGSVAPYGATEGGPYTPDMPTPAHGLSQDFQDGSRG
Ga0257172_11101511	3300026482	Soil	MKTLITVLTLSIVAATPMLAQAASWHSVQHAVRGSVAPYGATEGGPYTPDAPTPAHGL
Ga0257153_11128252	3300026490	Soil	MKTLITVLALSIATATPMLAQAASWQSVQDDARGSVAPYGATEGGPYTPSMQTPAQGLTHDFQDGSRG
Ga0257181_10874641	3300026499	Soil	MKTLITVLTLSIATATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0257165_11060551	3300026507	Soil	MKTLITVLTLSIVTATPMLAQAASRHNVQNDARGSVASYGATEGGPYTPDMPTPAHGLNHDFQDGSRG
Ga0257158_10231312	3300026515	Soil	MKTLITVLILSIAAATPTLAQAASWHSVQSAARGSVAPYGATEGGPYTPDAPTPAHGLSQDFQDGSRG
Ga0209648_102094861	3300026551	Grasslands Soil	MKTLITVLTLSIAAATPMLAQAASWHNVQHTARGSVAPYGATEGGPYTPDAPTPAHGFSQDFQDGSRG
Ga0209648_102654032	3300026551	Grasslands Soil	MKTLITVLILSIATATPMLAQAASWHSVQDDARGSAAPYGTTEGGPYTPDAPTPAHGFSQDFQDGSRG
Ga0209648_104507291	3300026551	Grasslands Soil	MKTLITVLTLSIATATPMLAQAASWHSVQNAARGSVASYGATEGGPYTPDMPTPAHGFSQDFQDGSRG
Ga0179593_11851483	3300026555	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGLSQDFQDGSRG
Ga0209625_10955271	3300027635	Forest Soil	MKTLITVLTLSIVTATPMLAQAASWHSVQNDARGSVASYGATEGGPYTPSMQTPAHGLNPDFQDGSRG
Ga0209388_10126132	3300027655	Vadose Zone Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQNAARGSVAAYGATEGGPYTPDMPTPAHGFSQDFQDGSRG
Ga0208990_11087692	3300027663	Forest Soil	LTLSIATATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMRTPAHGLSQDFQDGSR
Ga0209180_101506261	3300027846	Vadose Zone Soil	MKALITVLTLSIATATPMLAQAASRHNVQNDARGSVASYGATEGGPYTPDMPTPAHGLNNDFQDGSRG
Ga0209465_100658672	3300027874	Tropical Forest Soil	MKTLITVVTLSTAAATPMLAQAASWHSVQEDARGFVAPFRATEGGPYTPSMPTPAYGFSQDFQDGSRG
Ga0209488_101959402	3300027903	Vadose Zone Soil	MKTLVTVLTLSIAAATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMRTPAHGLSQDFQDGSRG
Ga0209488_108866401	3300027903	Vadose Zone Soil	MKTLITVLTLSIATATPMLAQAASWHSVQNAARGSVAPYGATEGGPYTPDMPTPAHGFSQDFQDG
Ga0209526_101245742	3300028047	Forest Soil	MKTLITVLTLSIVTATPMLAQAASWHSVQNDARGSVAPYGATEGGPYTPSMQTPAHGLSHDFQDGSRG
Ga0222749_106385971	3300029636	Soil	MKTLITVLTLSVVTATPMLAQAASWHSFQNDARGSVAPYGATEGGPYTPSMQTPAHGLSHDFQDGSRG
Ga0310915_106642351	3300031573	Soil	MKTLITVLTLSVAAATAMLAQAASRHSVQEDTRGFVAPFRATEGGPYTPSMPTPAHGFSQDFQDGSRG
Ga0306919_106567232	3300031879	Soil	MKTLITVLTLSVAAATAMLAQAASRHSVQEDTRGFVAPFRATEGGPYTPSMPTPAHGFSQDFQ
Ga0306926_111947751	3300031954	Soil	MKTLITVLTLSIAAATPMLAQAASWHSVREGARGFVAPFRATEGGPYTPSMPTPAHGFSQDFQDGSRG
Ga0307470_113732192	3300032174	Hardwood Forest Soil	TLITVLTLSIVTAAPMLAQAASWHNVQDDARGSVAAYGVSEGGPYTPSMQTPAHGLNHDFQDGSRG
Ga0306920_1026567211	3300032261	Soil	MKTLITVLTLSIAAATPMLAQAASWHSVQEDARGFVAPFRATEGGPYTPSMPTPAHGFSQDFQDGSRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072005

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences