NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F072129

Metagenome Family F072129

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072129
Family Type Metagenome
Number of Sequences 121
Average Sequence Length 66 residues
Representative Sequence VGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRR
Number of Associated Samples 94
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 77.36 %
% of genes near scaffold ends (potentially truncated) 68.60 %
% of genes from short scaffolds (< 2000 bps) 73.55 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (83.471 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(21.488 % of family members)
Environment Ontology (ENVO) Unclassified
(39.669 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.066 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.16%    β-sheet: 0.00%    Coil/Unstructured: 54.84%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF06577EipA 8.26
PF13414TPR_11 2.48
PF05272VirE 2.48
PF00905Transpeptidase 2.48
PF11064DUF2865 1.65
PF00107ADH_zinc_N 1.65
PF00248Aldo_ket_red 1.65
PF03466LysR_substrate 1.65
PF00550PP-binding 0.83
PF00072Response_reg 0.83
PF13356Arm-DNA-bind_3 0.83
PF06055ExoD 0.83
PF04392ABC_sub_bind 0.83
PF00534Glycos_transf_1 0.83
PF12802MarR_2 0.83
PF04430DUF498 0.83
PF03060NMO 0.83
PF00486Trans_reg_C 0.83
PF05050Methyltransf_21 0.83
PF00528BPD_transp_1 0.83
PF11453DUF2950 0.83
PF13460NAD_binding_10 0.83
PF13391HNH_2 0.83
PF11345DUF3147 0.83
PF07719TPR_2 0.83
PF02706Wzz 0.83
PF12973Cupin_7 0.83
PF00126HTH_1 0.83
PF03734YkuD 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG5545Predicted P-loop ATPase and inactivated derivativesMobilome: prophages, transposons [X] 2.48
COG0516IMP dehydrogenase/GMP reductaseNucleotide transport and metabolism [F] 0.83
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.83
COG1504Uncharacterized conserved protein, DUF498 domainFunction unknown [S] 0.83
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.83
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.83
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.83
COG3206Exopolysaccharide export protein/domain GumC/Wzc1Cell wall/membrane/envelope biogenesis [M] 0.83
COG3524Capsule polysaccharide export protein KpsE/RkpRCell wall/membrane/envelope biogenesis [M] 0.83
COG3737Uncharacterized protein, contains Mth938-like domainFunction unknown [S] 0.83
COG3765LPS O-antigen chain length determinant protein, WzzB/FepE familyCell wall/membrane/envelope biogenesis [M] 0.83
COG3932Exopolysaccharide synthesis protein ExoDCell wall/membrane/envelope biogenesis [M] 0.83
COG3944Capsular polysaccharide biosynthesis protein YveKCell wall/membrane/envelope biogenesis [M] 0.83

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.47 %
UnclassifiedrootN/A16.53 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573002|GZIGXIF02J0G7VAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria521Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10011290All Organisms → cellular organisms → Bacteria2465Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10131173All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria609Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10141390All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium581Open in IMG/M
3300005174|Ga0066680_10124971All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1594Open in IMG/M
3300005332|Ga0066388_101096278All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1347Open in IMG/M
3300005332|Ga0066388_106854184All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria574Open in IMG/M
3300005436|Ga0070713_100181669All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1890Open in IMG/M
3300005437|Ga0070710_10942600All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium626Open in IMG/M
3300005439|Ga0070711_101233030All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium648Open in IMG/M
3300005467|Ga0070706_100435324Not Available1220Open in IMG/M
3300005467|Ga0070706_100795581All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria875Open in IMG/M
3300005471|Ga0070698_101609561All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria601Open in IMG/M
3300005518|Ga0070699_100228369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1659Open in IMG/M
3300005559|Ga0066700_11096732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria521Open in IMG/M
3300005713|Ga0066905_100446236All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1062Open in IMG/M
3300005764|Ga0066903_106122112All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria629Open in IMG/M
3300005764|Ga0066903_106156547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria627Open in IMG/M
3300005844|Ga0068862_101825653All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium617Open in IMG/M
3300006046|Ga0066652_100507418All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1121Open in IMG/M
3300006800|Ga0066660_10283406All Organisms → cellular organisms → Bacteria → Proteobacteria1314Open in IMG/M
3300006800|Ga0066660_11078208All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium638Open in IMG/M
3300006844|Ga0075428_100187755All Organisms → cellular organisms → Bacteria2236Open in IMG/M
3300006845|Ga0075421_100406373All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1634Open in IMG/M
3300006854|Ga0075425_101105396All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium903Open in IMG/M
3300006871|Ga0075434_102183899All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria557Open in IMG/M
3300009089|Ga0099828_11488028All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria597Open in IMG/M
3300009094|Ga0111539_12547510All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria593Open in IMG/M
3300009100|Ga0075418_10843869All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales990Open in IMG/M
3300009147|Ga0114129_11360411All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria878Open in IMG/M
3300009162|Ga0075423_10583189All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1178Open in IMG/M
3300010043|Ga0126380_10512114All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria924Open in IMG/M
3300010358|Ga0126370_10682410All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria900Open in IMG/M
3300010358|Ga0126370_12104685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria554Open in IMG/M
3300010361|Ga0126378_10464113All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1380Open in IMG/M
3300010362|Ga0126377_10452092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1307Open in IMG/M
3300010366|Ga0126379_11447478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria793Open in IMG/M
3300010376|Ga0126381_104031155All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria571Open in IMG/M
3300010398|Ga0126383_10273920All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1670Open in IMG/M
3300010398|Ga0126383_11385943All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria793Open in IMG/M
3300010398|Ga0126383_12730478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria576Open in IMG/M
3300012207|Ga0137381_10621546All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria941Open in IMG/M
3300012208|Ga0137376_10819375All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria801Open in IMG/M
3300012210|Ga0137378_10458878Not Available1179Open in IMG/M
3300012361|Ga0137360_10457468All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1082Open in IMG/M
3300012923|Ga0137359_11135416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria668Open in IMG/M
3300012930|Ga0137407_11721854All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria597Open in IMG/M
3300012971|Ga0126369_10775071All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1040Open in IMG/M
3300012971|Ga0126369_11400620All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria789Open in IMG/M
3300012971|Ga0126369_11796923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria702Open in IMG/M
3300012984|Ga0164309_10616974All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria849Open in IMG/M
3300013306|Ga0163162_12854812All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria556Open in IMG/M
3300015358|Ga0134089_10478912All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium542Open in IMG/M
3300015371|Ga0132258_10749054All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2461Open in IMG/M
3300016270|Ga0182036_10852877All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300016341|Ga0182035_11141089All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria695Open in IMG/M
3300016357|Ga0182032_10188566All Organisms → cellular organisms → Bacteria1560Open in IMG/M
3300016387|Ga0182040_10406841All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300016445|Ga0182038_10031874All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3330Open in IMG/M
3300021560|Ga0126371_10909133All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1024Open in IMG/M
3300025929|Ga0207664_10443685All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300026297|Ga0209237_1179545All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria738Open in IMG/M
3300026324|Ga0209470_1136218All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1084Open in IMG/M
3300027050|Ga0209325_1004793All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1397Open in IMG/M
3300027873|Ga0209814_10160793All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria965Open in IMG/M
3300027874|Ga0209465_10067709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1727Open in IMG/M
3300027909|Ga0209382_11037146Not Available852Open in IMG/M
3300028047|Ga0209526_10026866All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae4038Open in IMG/M
3300031545|Ga0318541_10047624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2189Open in IMG/M
3300031545|Ga0318541_10558941All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium640Open in IMG/M
3300031546|Ga0318538_10732782All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria536Open in IMG/M
3300031561|Ga0318528_10006020All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5281Open in IMG/M
3300031573|Ga0310915_10656819All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria741Open in IMG/M
3300031679|Ga0318561_10114491All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1429Open in IMG/M
3300031719|Ga0306917_10581149All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria881Open in IMG/M
3300031740|Ga0307468_100171755All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1426Open in IMG/M
3300031744|Ga0306918_10304044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1229Open in IMG/M
3300031744|Ga0306918_10484895All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria967Open in IMG/M
3300031747|Ga0318502_10584125All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria672Open in IMG/M
3300031748|Ga0318492_10713614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria537Open in IMG/M
3300031765|Ga0318554_10065667All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2005Open in IMG/M
3300031770|Ga0318521_10376174All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria844Open in IMG/M
3300031770|Ga0318521_10932262All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria531Open in IMG/M
3300031793|Ga0318548_10005128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4736Open in IMG/M
3300031819|Ga0318568_10460831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria792Open in IMG/M
3300031820|Ga0307473_11031458All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria602Open in IMG/M
3300031835|Ga0318517_10024611All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2361Open in IMG/M
3300031879|Ga0306919_10189598All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1522Open in IMG/M
3300031890|Ga0306925_10154402All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2470Open in IMG/M
3300031890|Ga0306925_10327064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1647Open in IMG/M
3300031890|Ga0306925_10393601All Organisms → cellular organisms → Bacteria → Proteobacteria1485Open in IMG/M
3300031910|Ga0306923_10047618Not Available4718Open in IMG/M
3300031910|Ga0306923_10138630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2771Open in IMG/M
3300031941|Ga0310912_10108042All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2059Open in IMG/M
3300031945|Ga0310913_10030766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3418Open in IMG/M
3300031954|Ga0306926_12914354Not Available513Open in IMG/M
3300031981|Ga0318531_10547007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria524Open in IMG/M
3300032039|Ga0318559_10384312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria654Open in IMG/M
3300032042|Ga0318545_10021814All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2044Open in IMG/M
3300032066|Ga0318514_10739575All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria523Open in IMG/M
3300032076|Ga0306924_10253640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2020Open in IMG/M
3300032091|Ga0318577_10444032All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria619Open in IMG/M
3300032180|Ga0307471_100530344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1329Open in IMG/M
3300032261|Ga0306920_100652166All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1554Open in IMG/M
3300033289|Ga0310914_10239422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1628Open in IMG/M
3300033289|Ga0310914_11276739All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium636Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil21.49%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.18%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil13.22%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.26%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil7.44%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.61%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.96%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.48%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.65%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.83%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573002Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300027050Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FE1_003526702189573002Grass SoilVGGEPGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVLTPGTLTADQVR
AF_2010_repII_A1DRAFT_1001129033300000597Forest SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRR
AF_2010_repII_A1DRAFT_1013117323300000597Forest SoilVGGEPGATSAPIHGFGYLFSALRRQGLFADELVLQLTTFLRSLDLFLELIVLTPRTLTAN
AF_2010_repII_A1DRAFT_1014139013300000597Forest SoilVGGESGGTSAPIHGFNYLFSALRRQGLIADELVLQLTTFLRSLDLFLELIVLTPRTLTA
Ga0066680_1012497153300005174SoilVPTASETPASVGGEPGGTSGSIHGLGYLFSALSREGLIADELVLQLATFLRSLDLF
Ga0066388_10109627813300005332Tropical Forest SoilKTLAERESAVASVDREPGSTSGSLEGVGDLFTALRRQGLIADELVLQLATFLRSLDLFLELSVWTPRALTTNQWTAT*
Ga0066388_10457178913300005332Tropical Forest SoilVVVETGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELI
Ga0066388_10685418413300005332Tropical Forest SoilVGGEPGGTSGSIHGLGYLFSALKREGLIADELVLQLATFLRSLDLFLELTVRTVPR
Ga0070713_10018166923300005436Corn, Switchgrass And Miscanthus RhizosphereVGGEPGGTSGSIHGLGYLISALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLT
Ga0070710_1094260023300005437Corn, Switchgrass And Miscanthus RhizosphereLSALESMPRGTPASLVVEPGGTSVSTHGLGYLFTALRRQGLITDELVLQLTTFLRSLDLFLELIVLT
Ga0070711_10123303013300005439Corn, Switchgrass And Miscanthus RhizosphereLSALESMPRGTPASLVVEPGGTSVSTHGLGYLFTALRRQGLITDELVLQLTTFLRSLDLFLELIVLTPG
Ga0070706_10043532413300005467Corn, Switchgrass And Miscanthus RhizosphereVGGEPGGTSGSIHGLGYLFRTLRREGLIPDELVLQLATFLRSLDLFLELTVRTVPRTLTA
Ga0070706_10079558123300005467Corn, Switchgrass And Miscanthus RhizosphereVGGEPGGTSGSIHGLGYLFSALSREGLIADELVLQLATFLRSLDLFLELTVRTVAGTLTANQIQRGGK*
Ga0070698_10160956113300005471Corn, Switchgrass And Miscanthus RhizosphereGGEPGGTSGSIHGLGYLISALRREGLIADELVLQLATFLRSLDLLLELTVRTVPRTLTANQVQRFGK*
Ga0070699_10022836913300005518Corn, Switchgrass And Miscanthus RhizosphereTPASVGGEPGGTSGSIHGLGYLFSALSREGLIADELVLQLATFLRSLDLFLELTVRTVAGTLTANQIQRGGK*
Ga0066700_1109673213300005559SoilLPIRPASLVVEPGGTSVSTHSLGCLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVL
Ga0066905_10044623643300005713Tropical Forest SoilMESSGTPASTHGLGYLFTALRCQGLTADEFVLQLTTFLRSLDLFLELIVLTPRTLTANQVRHGGKQGTD
Ga0066905_10152906113300005713Tropical Forest SoilVGGEPGSTSGSTQGLGYLFTTVRRQGLIADELVLQLTTFLRSLDLFLELIVLTP
Ga0066903_10355768513300005764Tropical Forest SoilMTVAFMQFRITTLTSLGGEPGGTSVSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTV
Ga0066903_10612211233300005764Tropical Forest SoilVGGEPGGTSGSIHGLGYLFGALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLT
Ga0066903_10615654713300005764Tropical Forest SoilVGEEPGGTSGSIHGLGHLFSALRREGLIADELVLQLVTFLRSLDLFLELTVQAVPR
Ga0068862_10182565313300005844Switchgrass RhizosphereMPRGTPASLVVEPGGTSVSTHGLGYLFTALRRQGLITDELVLQLTTFLRSLDLFLELI
Ga0066652_10050741823300006046SoilVGGEPGGTSASIHGLGHLFSALRREGLIADELVLQLATFLRSHDLFLELRVRTPRTLTANQVRQDGKEGTDGRERSRIHSVPAQH*
Ga0066660_1028340633300006800SoilPTASETPASVGGEPGGTSGSIHGLGYLFSALSREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTANQVQRGGK*
Ga0066660_1107820823300006800SoilVGGEPGGTSASIHGLGYLFSALRREGLIADEPVLQLTTFLRSLDLFLELIVLTPGTLT
Ga0075428_10018775543300006844Populus RhizosphereLTHGLGYLFTAFRRQGLIADELVLLLTTFLRSLDLFIELIVLIPRTLTANQVWPGGKQGTDNPELSRLHSSACLVLA*
Ga0075421_10040637323300006845Populus RhizosphereVGGVPGGTSASIHSLGYLFSALRREGLIADELVLQLATFLGSLDLFLELTVRTVPRTLTTNQVRCGGKQGTDRPEL*
Ga0075425_10110539623300006854Populus RhizosphereMRGGETPASGSGEPGGTSASIHGLGYLFSALRREGLIADELVLQLTTFLRSLDLFLELIVLTPRTLTATRVRARVMGS*
Ga0075434_10218389913300006871Populus RhizosphereVGGEPAGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTVAGTLTANQIQRGGK*
Ga0099828_1148802823300009089Vadose Zone SoilLGYLLTALRRQRLASDKPVLQLATFLRSHDLFLELSVRTPRTPRTLTANQVRHSGKQSTDGR*
Ga0111539_1254751023300009094Populus RhizosphereVGGVPGGTSASIHSLGYLFSALRREGLIADELVLQLATFLGSLDLFLELTVRTVPRTLTANQVQRFGK*
Ga0075418_1084386933300009100Populus RhizosphereVGGEPGGTSGSIHGLGYLFSALSREGLIADELVLQLATFLRSLDLLLELRVFTP*
Ga0114129_1136041113300009147Populus RhizosphereVGGEPGGSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELIVLAPRTLTANQ
Ga0075423_1058318913300009162Populus RhizosphereVEPGGTSVSTHGLGYLFTALRRQGLIADEFVLQLTTFLRSLDLFLELIVLTTSTLTANQVRHGGKQGTHNPELS
Ga0126380_1051211413300010043Tropical Forest SoilVVVETGNTSGSTHGLGYLFTALRRQGLIADELVLQLKTFLRSLDLFLELIVLAPRTLTANQVRHGGKQGTDDPEHSRIHS
Ga0126373_1021644513300010048Tropical Forest SoilVVVETGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVLTP
Ga0126370_1068241033300010358Tropical Forest SoilMESSGTPASTHGLGYLFTALRCQGLTADEFVLQLTTFLRSLDLFLELIVLTPRTLTANQVRHGGKQ
Ga0126370_1210468513300010358Tropical Forest SoilVGGEPGGTSGSIHGLGYLFGALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQV
Ga0126378_1046411313300010361Tropical Forest SoilVGGEPGGTSGSIHGLGYLFSALRRDGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGRKQGTDGPELSRIH
Ga0126377_1045209213300010362Tropical Forest SoilVGEEPGGTSAPIHGFGYLFSALRRQGLIADELVLQLTTFLCSLDLFLELIVLTTSTLLTAAQKPLRR*
Ga0126379_1144747833300010366Tropical Forest SoilVGGKPGGTSAPIHGFGYLFSALRRQGLIADEIVLQLTTFLRSLDLFLELIVLTPRTL
Ga0126379_1327227323300010366Tropical Forest SoilMTVAFMQFRITTPTSLGGEPGGTSVSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTV
Ga0126381_10403115513300010376Tropical Forest SoilVVVETGGTSGSTHGLGYLFTALRRHGPIADELVLQLTTFLRSFDLFLELIVLTPRTAPALSCSGS*
Ga0126383_1027392013300010398Tropical Forest SoilVGGEPGGTCGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLKLTVRTVPR
Ga0126383_1138594323300010398Tropical Forest SoilMESSGTPASTHGLGYLFTALRCQGLTADEFVLQLTTFLRSLDLFLELIVLTPRTLTA
Ga0126383_1273047813300010398Tropical Forest SoilVGGEPGDTSGSIHGLGYLFRALRREGLIANERVLQLATFLRSLDLFLELTVRTVPRTLTANQVRRGGK*
Ga0137382_1049190513300012200Vadose Zone SoilVGGEPGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSFDLFLESVAT*
Ga0137381_1062154623300012207Vadose Zone SoilVGGELGGTSGSIHGLGYLFSALSREKSIADELVLQLATFLRSLDLFLELTVRTVPGTLTANQVQRGGK*
Ga0137376_1081937513300012208Vadose Zone SoilVGGEPGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVLTTSTLTANQVSVWPQARHT*
Ga0137378_1045887813300012210Vadose Zone SoilVGGEPGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVLAPRTLTANQVRH
Ga0137360_1045746813300012361Vadose Zone SoilVGGEPGGTSGSIHGLGYLISALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTANQVRRGGK*
Ga0137359_1113541633300012923Vadose Zone SoilGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTIPRTLTANQVQRGGKQGTDALHHHYVRI*
Ga0137407_1172185413300012930Vadose Zone SoilVGGEPGGTSASIHGLGYLFTAFRRQRLIADEPVLQLTTFLRSLDLFLELIVLTPGTLTANQVRQGGK
Ga0164301_1024217233300012960SoilVEPGGTPGSTHGLGYLSTALRRQGLIADELVLQLTTFLRSLDLFLEL
Ga0126369_1077507113300012971Tropical Forest SoilVGGEPGGTSGSIHGLGYLFSALRREGLIAGELVLQLATFLRSLELFLELTVRTVPRTLTTNQVRRGRKQGTDGPELSR
Ga0126369_1140062013300012971Tropical Forest SoilMESSGTAASTHGLGYLFTALRCQGLTADEFVLQLTTFLRSLDLFLELIVLTPRTLTANQVRHGGKQGTDN
Ga0126369_1179692323300012971Tropical Forest SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLVTFLRSLDLFLELTVQAVPRILTTTQVRRGGKEGTDGRELSRIHSRTP
Ga0164309_1061697423300012984SoilVGGEPCGTSGSIHGLRYLFSALRREGLIADELILQLATFLRSLDLFLELTVRTVPGTLTANQVQRGGK*
Ga0163162_1285481233300013306Switchgrass RhizosphereSLQGLGDLFTALRPQGLIADELVLQLATFLRSLDLFLELKVLTP*
Ga0134089_1047891213300015358Grasslands SoilVGGEPGGTSASIHGLGYLFSALRREGLIADELVLQLATFLGSLDLFLELTVRTVPRT
Ga0132258_1074905453300015371Arabidopsis RhizosphereVGGEPGGTSGSTHGLGYLFTAFRRQRLIADEPVLQLTTFLRSLDLFLELIVLTPGTLTANQVRHGG
Ga0182036_1085287723300016270SoilVEQPSSSVGGQLGATSAPIHDRGYLFTALRRQGLIADELVLQLATFLRSLDLFLELIVLAPRTL
Ga0182033_1043242423300016319SoilESGGTSGSLHGVGDLFTALRRQGLIADELVLQLATFLRSLELFLELIILTQ
Ga0182033_1182472413300016319SoilVVVETGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVLT
Ga0182035_1114108923300016341SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRG
Ga0182032_1018856633300016357SoilVEQPSPSVGGQLGATSAPIHDRGYLFTALRRQGLIADELVLQLATFLRSLDLFLELIVLAPRTLTANQV
Ga0182040_1040684123300016387SoilVGGEPGGTSAPIHGFGYLFSALRRQGLIADELVLQLTTFLRSLDLFLELIVLTPRTLT
Ga0182038_1003187413300016445SoilVAGENGGTSAPIHGLGYLFSALRREGLIADELLLQLATFLGSLDLFLELTVP
Ga0182038_1007572713300016445SoilVGGESGGTSAPIHGFGYLFSALSRQGLIADELVLQLTTFLRSLDLFLELIV
Ga0126371_1090913343300021560Tropical Forest SoilMESSGTAASTHGLGYLFTALRCQGLTADEFVLQLTTFLRSLDLFLELIVLTPRTLTAN
Ga0207664_1044368543300025929Agricultural SoilVGGEPGGTSGSIHGLGYLFSALSREGLIADELVLQLATFLRSLDLFLELMIRTVPR
Ga0209237_117954513300026297Grasslands SoilVGGEPGGTSASIHGLGYLFSALRREGLIADELVLQLATFLGSLDLFLELTVRTVPRTLTTNQVRC
Ga0209470_113621813300026324SoilVGGKPGGTSASIHGLGHPFSALRREGLIADELVLQLATFLRSHDLFLELRVRTPR
Ga0209325_100479323300027050Forest SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTANQVQRGGK
Ga0209814_1016079323300027873Populus RhizosphereVGGVPGGTSASIHSLGYLFSALRREGLIADELVLQLATFLGSLDLFLELTVRTVPRTLTTNQVRCGGKQGTDRPEL
Ga0209465_1006770933300027874Tropical Forest SoilVGGEPGGTSGSIHGLGYLFSALRRDGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRG
Ga0209382_1103714613300027909Populus RhizosphereLTHGLGYLFTAFRRQGLIADELVLLLTTFLRSLDLFIELIVLIPRTLTANQVWPGGKQGTDNPELSRLHSSACLVLA
Ga0209526_1002686653300028047Forest SoilVGGEPGGTSGSIHGLGYLISALRREGLIADELVLQLATFLRSLDLLLELTVRTVPRTLTANQVQRFGK
Ga0318541_1004762433300031545SoilVVVETGGTSGSTHGLGYLFTALRRQGLIADELVLQLTTFLRSLDLFLELIVLTPRTL
Ga0318541_1055894113300031545SoilVGGEPGGTSAPIHGFGYLFSTLRRQGLIADELVLQLTTFLRSLDLFLELRVLTPLTLTA
Ga0318538_1073278223300031546SoilVAGENGGTSAPIHGLGYLFSALRREGLIADELLLQLATFLGSLDLFLELTVPRTLTTYQVLCGGKQGTDGPELSRMHS
Ga0318528_1000602093300031561SoilLSGNARVGTPASVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPR
Ga0310915_1065681913300031573SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGSKQGTDDPE
Ga0318561_1011449133300031679SoilVAGENGGTSAPIHGLGYLFSALRREGLIADELLLQLATFLGSLDLFLELTVPRTLTTYQVLCGGKQGTDGPELSRMHSS
Ga0306917_1058114923300031719SoilPTASETPASVGGEPAGTSGSIHGLGYLFSALSRDESIADELVLQLATFLRSLDLFLELTVRTVPGTLTANQNQRGGK
Ga0306917_1095234123300031719SoilMSRESGGTSGSLHGVGDLFTALRRQGLIADELVLQLATFLRSLELFLELIILTQ
Ga0307468_10017175523300031740Hardwood Forest SoilMPRGTPASLVVEPGGTSVSTHGLGYLFTALRRQGLITDELVLQLTTFLRSLDLFLELIVLTPSTLTASQV
Ga0306918_1030404423300031744SoilVGGELGRTSGSIHGLGYLFSTLSREGLIADELVLQLATFLRSLDLFLELTVRTVPGTLTANQVQRGSK
Ga0306918_1048489513300031744SoilLPVRPASLVVEPGGTSVSTHGLGYLFTALGRQGLIADEFVLQLTTFLRSLDLFLELIVLTTSTLTANQVR
Ga0318502_1058412513300031747SoilVGGEPGGTSASIHGLGYLFSARRREGLIADELVLQLATFLRSLDLFLELRVRTVPRTLTTNQVRRGGKQGTD
Ga0318492_1071361413300031748SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTTNQV
Ga0318554_1006566713300031765SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTTNQVRRGGKQGTEGPELSRIH
Ga0318521_1037617433300031770SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGSKQGTDDPELSRIHSR
Ga0318521_1093226213300031770SoilVGGEPGDTSGSIHGLGYLFRALRREGLIADELVLQLATFLRSLDLFLELTVRTV
Ga0318548_1000512813300031793SoilLSGNARVGTPASVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTTNQVRRGRK
Ga0318565_1042210813300031799SoilLSGNARVGTPASVGGEPGGTSGSIHGLGCLFSALRREGLIADELVLQLATFLRSLDLFLELTVRT
Ga0318568_1046083123300031819SoilLIRSWEPGSTSESIHGVGDLFTALRRQGLFPDELALQLATFLRSLDLFLELIVLTQ
Ga0307473_1103145823300031820Hardwood Forest SoilMRGGETPASGSGEPGGTSASIHGLGYLFSALRREGLIADELVLQLTTFLRSLDLFLELIVLTPRTLTATRVRARVMGS
Ga0318517_1002461143300031835SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTTNQVRRGRKQGTDGPELSRI
Ga0306919_1018959823300031879SoilVVGEPGGTSGSIHALGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPR
Ga0306925_1015440233300031890SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTANQVRRGGKQGTEGPELSRIHSRTQ
Ga0306925_1032706443300031890SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGS
Ga0306925_1039360113300031890SoilVGGEPGGTSGSIHGLGYLFSALRREGLIAGELVLQLATFLRTLDLFLELTVRTVPRTLTTNQVRRGRKQGTDGPEL
Ga0306925_1158824423300031890SoilMSRESGGTSGSLHGVGDLFTALRRQGLIADELVLQLATFLRSLELFLE
Ga0306923_1004761843300031910SoilVGGEPAGTSGSIHGLGYLFSALSRDESIADELVLQLATFLRSLDLFLELTVRTVPGTLTANQNQRGGK
Ga0306923_1013863013300031910SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGSKQGTDDPELS
Ga0310912_1010804213300031941SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTTNQVRRG
Ga0310912_1117049913300031941SoilVGGEPGGTSAPIHGFGYLFSTLRRQGLIADELVLQLTTFLRSLDLFLELRVL
Ga0310913_1003076653300031945SoilVGGEPGGTSGSIHGLGYLFSALRREGLIAGELVLQLATFLRTLDLFLELTVRTVPRTLTTNQVRRGRKQGTDGPELS
Ga0306926_1291435413300031954SoilVGGELGGTSGSIHGLGYLFSTLSREGLIADELVLQLATFLRSLDLFLKLTVRTVP
Ga0318531_1054700723300031981SoilVGGEPGGTSASIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLTTNQVRRGGKQGTDD
Ga0318559_1038431213300032039SoilLPVRPASLVVEPGGTSVSTHGLGYLFTALRRQGLIADEFVLQLTTFLRSLDLFLELIVLTTSTLTANQVRHGGK
Ga0318545_1002181433300032042SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGGKQGTDGPELSRIHSG
Ga0318514_1073957523300032066SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGSKQGT
Ga0306924_1025364033300032076SoilVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLELFLELTVRTVPRTLT
Ga0318577_1044403213300032091SoilETPASVGGELGRTSGSIHGLGYLFSTLSREGLIADELVLQLATFLRSLDLFLELTVRTVPGTLTANQNQRGGK
Ga0318540_1000244113300032094SoilLSGNARVGTPASVGGEPGGTSGSIHGLGYLFSALRREGLIADELVLQLATFLRSLDLFLELTVR
Ga0307471_10053034433300032180Hardwood Forest SoilMRGGETPASGSGEPGGTSASIHGLGYLFSALRREGLIADELVLQLTTFLRSLDLFLELIV
Ga0306920_10065216643300032261SoilVGREPGGTSGSIHGLGYLFSALRREGLIADEPVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGSKQGTDDP
Ga0310914_1023942213300033289SoilVGGEPGGTSGSIHGLGCLFSALRREGLIADELVLQLATFLRSLDLFLELTVRTVPRTLTTNQVRRGGKQGTDDPELSRIHSR
Ga0310914_1127673913300033289SoilVDREPGSTSGSLEGVGDLFTALRRQGLIADELVLQLATFLRSLDLFLELSVWAPRALTTNQIRHGGKQGTDKFRALAHSFQCLAGIDF

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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