Metagenome / Metatranscriptome Family F072190

Basic Information
Family ID	F072190
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	94 residues
Representative Sequence	FAVVFYGYHDLIRSGNLDGFLKTRAEEREHLFNRLRRSSELPDRFSAVELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK
Number of Associated Samples	105
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.50 %
% of genes near scaffold ends (potentially truncated)	32.23 %
% of genes from short scaffolds (< 2000 bps)	29.75 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Most Common Taxonomy
Group	Unclassified (66.942 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.529 % of family members)
Environment Ontology (ENVO)	Unclassified (23.140 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.587 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.68% β-sheet: 0.00% Coil/Unstructured: 47.32%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.250.1.1: IpaD-like	d3nfta_	3nft	0.68228
a.2.7.0: automated matches	d6p24c1	6p24	0.67811
a.238.1.0: automated matches	d3ok8a_	3ok8	0.66747
a.7.1.1: Spectrin repeat	d1cuna2	1cun	0.66363
a.24.8.1: Proteasome activator	d1yaro_	1yar	0.66026

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02142	MGS	91.74
PF08281	Sigma70_r4_2	1.65
PF13414	TPR_11	0.83
PF03841	SelA	0.83
PF04542	Sigma70_r2	0.83
PF00069	Pkinase	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.31
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.94 %
All Organisms	root	All Organisms	33.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.94 %
cellular organisms	root	All Organisms → cellular organisms	33.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105030725	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300004633\|Ga0066395_10298441	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300005332\|Ga0066388_101549554	All Organisms → cellular organisms → Bacteria → Acidobacteria	1162	Open in IMG/M
3300005332\|Ga0066388_108582265	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300005340\|Ga0070689_100547981	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300005440\|Ga0070705_101579900	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300005598\|Ga0066706_11340299	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300005598\|Ga0066706_11445767	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300005764\|Ga0066903_100580695	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300006049\|Ga0075417_10699635	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300006794\|Ga0066658_10048555	All Organisms → cellular organisms → Bacteria → Acidobacteria	1815	Open in IMG/M
3300006797\|Ga0066659_10882924	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300006844\|Ga0075428_100460033	All Organisms → cellular organisms → Bacteria → Acidobacteria	1362	Open in IMG/M
3300006845\|Ga0075421_100216592	All Organisms → cellular organisms → Bacteria	2362	Open in IMG/M
3300006852\|Ga0075433_11004833	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300006853\|Ga0075420_100750091	All Organisms → cellular organisms → Bacteria → Acidobacteria	841	Open in IMG/M
3300006871\|Ga0075434_100029225	All Organisms → cellular organisms → Bacteria	5421	Open in IMG/M
3300006880\|Ga0075429_100034717	All Organisms → cellular organisms → Bacteria	4383	Open in IMG/M
3300009012\|Ga0066710_100474108	All Organisms → cellular organisms → Bacteria → Acidobacteria	1881	Open in IMG/M
3300009100\|Ga0075418_10088325	All Organisms → cellular organisms → Bacteria	3294	Open in IMG/M
3300009100\|Ga0075418_10556825	All Organisms → cellular organisms → Bacteria → Acidobacteria	1232	Open in IMG/M
3300009147\|Ga0114129_10698950	All Organisms → cellular organisms → Bacteria → Acidobacteria	1303	Open in IMG/M
3300009176\|Ga0105242_12852637	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300010047\|Ga0126382_10512863	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300010322\|Ga0134084_10091047	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300010376\|Ga0126381_101939020	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300012167\|Ga0137319_1061798	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300012212\|Ga0150985_102330281	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300014154\|Ga0134075_10329080	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300015358\|Ga0134089_10221058	All Organisms → cellular organisms → Bacteria → Acidobacteria	767	Open in IMG/M
3300015371\|Ga0132258_13698627	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300016357\|Ga0182032_11985391	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300016422\|Ga0182039_10237036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1478	Open in IMG/M
3300017656\|Ga0134112_10381494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300025934\|Ga0207686_10340674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1126	Open in IMG/M
3300026540\|Ga0209376_1085272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1665	Open in IMG/M
3300027907\|Ga0207428_11001765	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300031833\|Ga0310917_10619301	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300031947\|Ga0310909_11345379	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300032205\|Ga0307472_101355090	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.07%
Host-Associated	Host-Associated	28.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.64%
Plants	Host-Associated → Plants	28.93%
Aquatic	Environmental → Aquatic	7.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.92%
Sediment	Environmental → Aquatic → Sediment	5.79%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Marine	Environmental → Aquatic → Marine	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.53%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.53%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.44%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.13%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000178	Pristine groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_00218360	2067725002	Soil	CAAAAMSDPKLDSFIASQANSFAVVFYGYHELIRKATSTDFLKVRSEESRRLLVRLQRSSELPNRTTAIETSPQYGIASIAFSHAVTDVANVWFHIWKTVNGDLR
FW301_10131962	3300000178	Groundwater	REGNLPGFLRVRADERERLLNRLRRSSELPDKTPAIEMSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLR*
INPhiseqgaiiFebDRAFT_1016584481	3300000364	Soil	YGHHDLIRMGDLAGFLKVRSAEREQLFRRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
INPhiseqgaiiFebDRAFT_1050307251	3300000364	Soil	AIRDAGCAVAAMSDPKLDPLIASQAKNFAVVFYGYHDLIRKGDLNGFLKVRSEESRRLLNRLNRSSELPDRTNAIEVSPQYGIASIAFSHAVTDVANVWFHIWKAVNGDLR*
F14TC_1008759891	3300000559	Soil	HDMIRAGDLPGFLNVRSEERDRLFRRLRRSSELPDLYQAIETSPVFGIASIAFSHAVTDVANVWFYIWKAADGDIK*
JGI1027J11758_117163531	3300000789	Soil	AAAAMSDPRLDSLIGSQANKFAVVFYGYHDLIRKGDLNGFLKVRSEESRRLLNRLNRSSELPDRTNAIEVSPQYGIASIAFSHAVTDVANVWFHIWKAVNGDLR*
JGI1027J12803_1006570381	3300000955	Soil	NRFEVVFYGYHDMIRAGDLPGFLNVRSEERDRLFRRLRRSSELPDLYQAIETSPVFGIASIAFSHAVTDVANVWFHIWKAADGDIK*
Ga0055489_101897962	3300004145	Natural And Restored Wetlands	PDLDSIAASNASKFVVVFYGFHPEIEKGDLAAYLRTRTEEHERLLRRLRRSSELPDRLESIENSPQFGIAAIAFSHAVTDVANVWLHIWKSVNGASN*
Ga0063356_1032093252	3300004463	Arabidopsis Thaliana Rhizosphere	LIRARNLSGFLAARNEERRRLSARFQRSAELPDRNDVVETSPRFGIASVAYSHAVTDVTNVWYLIWQTANGDSK*
Ga0066395_102984411	3300004633	Tropical Forest Soil	VAALNDPNLDSLVDANAAKFSVVFYGYHERILAGDLAGFLQIRTQERQQLLRRLNRSSELPDRNSNVETSPNYGIASIAFSHAATDVVNVWFHIWKESHGDLQ*
Ga0062591_1029440832	3300004643	Soil	AAMSDPRLDPLIASQADKFAVVFYGYHDLIRKGDLNGFLKVRSEESRRLLNRLNRSSELPDRTTAIETSPQYGIASIAFSHAVTDVANVWFHIWKTVNGDLR*
Ga0066685_109249072	3300005180	Soil	GYHDLILTGNLAGFLNLRAEERERLMKRLRRSSELPDRTNVIENSPQFGIASIAFSHAVTDVANVWLHIWKTVNGDLH*
Ga0066676_102886451	3300005186	Soil	AALNDPRLDSVVSSQVNAFAVVFYGYHDLIRDGDLAGFLRVRAEERERLFRRLRRSSELPDRTNEIELSPQFGIASIAFSHAVTDVANIWFHIWRTVNGDLR*
Ga0066675_109256321	3300005187	Soil	GDLAGFLNARREEREHLFNRLRRSSELPDLNSVIETSPRFGIASIAYSHAVTDVANVWFHIWKAVNGDLN*
Ga0070690_1010799552	3300005330	Switchgrass Rhizosphere	YDEQIRAGNLANFLKTRADERQRLFTRLRRSSELPDRNTAVETSPQYGIAAIALSHAVTDVANVWFHIWRTANGEVK*
Ga0066388_1015491071	3300005332	Tropical Forest Soil	AAQSSKFEVVFYGHHDLIRMGDLAGFLKVRSAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0066388_1015495541	3300005332	Tropical Forest Soil	ASIAAMRDAACAVAMLNDPQLDSLVSAQAKNFAVVFYGYHDLIRAGNLDGFLKTRAEEREHLFNRLRRSSELPDRFSAVELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0066388_1085822651	3300005332	Tropical Forest Soil	RGADLSAAVAAVRDAGCAVAALNDPQLDSLVAAQSSKFEVVFYGHHDLIRQGDLTGFLKVRSAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLAFSHAVTDVANVWVYIWKAANTNPK*
Ga0070677_107831061	3300005333	Miscanthus Rhizosphere	NMDALVNTNAPKFEVVFYGYHDRILAGDLAGFLRIRAQERDQLRRRLNRSSELPNRNNTVETSPDFGIASIAFSHAATDVVNVWFHIWKQSRGDLR*
Ga0068869_1010841901	3300005334	Miscanthus Rhizosphere	EVVFYGYHDLIQAGNLSDFLKSRSEERERLFSRLRRSSELPDRSDSIETSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0070689_1005479811	3300005340	Switchgrass Rhizosphere	IRDAGCAAAVLNDPQLDSLIAAQVNNFTLVFYGYDEQIRAGNLANFLKTRADERQRLFTRLRRSSELPDRNTAVETSPQYGIAAIALSHAVTDVANVWFHIWRTANGEVK*
Ga0070673_1009619232	3300005364	Switchgrass Rhizosphere	GFDERIVKGDLKGFLKARTEESERLLQRLRRYSELPDKTTAIETSPQYGIASIAFSHAVTDVANVWYHIWKQAQGDLRQE*
Ga0070705_1015799002	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	ASIRDAGCAVAALNDPQLDSLVAAQANKFAVVFYGYHDSIRAGNLPAFLKVRSEERERLFRRLHRSSELPDRNDVVETSSQFGIASIAISHAVTDVANIWFHIWNTANKR*
Ga0068867_1006164551	3300005459	Miscanthus Rhizosphere	ANRFAVVFYGYHDLIQTGNLGDFLKTRAEERERLFARLRRSSELPDRSDSIETSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0066701_109271372	3300005552	Soil	SLVAGQAEKFAVVFYGYHDLILTGNLAGFLNLRAEERERLMKRLRRSSELPDRTNVIENSPQFGIASIAFSHAVTDVANVWLHIWKTVNGDLH*
Ga0066705_103134121	3300005569	Soil	LTARREERDRLFTRLRRSSELPDRNNVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0066691_102679402	3300005586	Soil	FAVVFYGYHQLITDGDLAGFLNARREERERLFTRLRRSSELPDRNNVIETSSQFGIASIAYSHAVTDVANVWYLIWKTVNGDLK*
Ga0066706_113402991	3300005598	Soil	AAAALNDPQLDSLVAAQAEKFTVVFYGYHELITNGDLAGFLTARREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0066706_114457672	3300005598	Soil	ASVAAIRDAACAAAALNDPKLDSLVSAQASKFSVVFYGYHDLILAGDLTGFLKVRSEERDRLFSRLRRSSELPDRYDAIETSPQFGIASIAFSHAVTDVANIWFHIWKQVNGDLK*
Ga0068859_1019390232	3300005617	Switchgrass Rhizosphere	DSLIASQADNFAVVFYGYHDLIRKGDLNGFLKVRSEESRRLLDRLQRSSNLPDRTNAIETSPKYGIASIAFSHAVTDVANVWFHIWKTVNGDLR*
Ga0066903_1005806952	3300005764	Tropical Forest Soil	AALNDPQLDSFVAAQSSKFEVVFYGHHDLIRAGDLAGFLKARAAERERLFSRLRRSSELPNRNDTVENSPQFGIASIALSHAVTDVANVWSYIWKATNADLK*
Ga0068862_1020222641	3300005844	Switchgrass Rhizosphere	LSDPQIDSFVAAQANKFEVVFYGFHDLIRAGRLDAFIKTRTEESTRLLNRLRRSSELPDRSNVVETSPQFGIAAIALSHAVTDVANVWFHIWKTANGDLR*
Ga0066651_106566851	3300006031	Soil	LITNGDLAGFLTARREERDRLFTRLRRSSELPDRSSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0066656_101650192	3300006034	Soil	YHDLIRAGNFAGFLKARAEERERLFSRLKRSSELPNRNDAVETSPQFGIASIALSHAATDVANVWFHIWKSANGDLR*
Ga0075417_106996352	3300006049	Populus Rhizosphere	ALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRGAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0066658_100485552	3300006794	Soil	AGCATAALNDPQLDSLVAAQAGKFSVVFYGYHQLIRTGDLAGFLNARQEEREHLFNRLRRSSELPDLNSVIETSPQFGIASIAYSHAVTDVANVWFHIWKAVNGDLN*
Ga0066659_108829242	3300006797	Soil	AAMRDAGCAAAALNDPQLDSLVATQSGKFSVVFYGYHDLIRTGDLPGFLNTRSTERERLFNRLRRSSELPNRNNVIETSPQFGIAAIAYSHAVTDVANVWFHIWKAVNGDLR*
Ga0079220_106691582	3300006806	Agricultural Soil	SKFAAVFYGYHELIRTGDLPGYLNVRREERERLLSRLRRSAELPDRDSAIERSSQFGIASIAYSHAVTDVANIWFHIWKTANGDLN*
Ga0075428_1004600332	3300006844	Populus Rhizosphere	NDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRGAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075421_1002165921	3300006845	Populus Rhizosphere	VRDAGCAVAALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRSAEREQLFKRLRRSSELPDRGGPVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075421_1013002762	3300006845	Populus Rhizosphere	AALNDPHLDSLVAAQVNRFEVVFYGYHDMIRAGDLPGFLNVRSEERDRLFRRLRRSSELPDLYQAIETSPVFGIASIAFSHAVTDVANVWFHIWKAADGDIK*
Ga0075431_1003164312	3300006847	Populus Rhizosphere	HDLIRMGDLAGFLKVRSAEREQLFKRLRRSSELPDRGGPVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075433_110048332	3300006852	Populus Rhizosphere	GDLSAAVAAVRDAGCAVAALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRGAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075420_1007500911	3300006853	Populus Rhizosphere	AMRDAGCAIAEMSDPRLDSLVSAQSSRFAVVFYGYHPTIQAGNLAEFVKVRKEESERLLRRLRRSSELPDRYTDVETSPQFGIASIAFSHAVTDVANVWYYIWKSVNGDLKE*
Ga0075434_1000292251	3300006871	Populus Rhizosphere	AGCAAAALNDPQLDSLVATQSGNFSVVFYGYHDLIRTGDLPGFLNARSTERERLFNRLRRSSELPNRNNVIETSPQFGIAAIAYSHAVTDVANVWFHIWKAVNGDLR*
Ga0075429_1000347171	3300006880	Populus Rhizosphere	QLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRSAEREQLFKRLRRSSELPDRGGPVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075419_108903252	3300006969	Populus Rhizosphere	DSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRSAEREQLFRRLRRSSELPDRGGPVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075435_1014626921	3300007076	Populus Rhizosphere	GFLTTRAEERERLLARLRRSSELPDRTDAVETSPNFGIASIAISHAVTDVTNIWFHIWSSANGDLK*
Ga0066710_1004741082	3300009012	Grasslands Soil	MAASVTAIRDAGCAVAVLNDPQLDSLVGAQADKFAVVFYGYHDLILTGNLAGFLNLRAEERERLMKRLRRSSELPDRTNVIENSPQFGIASIAFSHAVTDVANVWLHIWKTVNGDLH
Ga0105245_112252182	3300009098	Miscanthus Rhizosphere	SLVASQASAFAVVFYGYHDLIQSGDLPGFLKVRSEERERLFSRLRRSSELPDRDNKVETSPKFGIASIAFSHAVTDVANVWFHIWKTAGGGSQ*
Ga0075418_100883253	3300009100	Populus Rhizosphere	AVAAVRDAGCAVAALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRSAEREQLFKRLRRSSELPDRGGPVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0075418_105568252	3300009100	Populus Rhizosphere	AVAAVRDAGCAVAALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRGAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0114129_106989501	3300009147	Populus Rhizosphere	AVRDAGCAVAALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRGAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0105242_128526371	3300009176	Miscanthus Rhizosphere	VSVAAIRDAGCAAAALNDPQLDALVSTQANKFEVVFYGYHDLIHAGDLAGFLRTRAEERDRLFGRLRRSSELPDRYNALETSSQFGIAAIAFSHAVTDVANVWLHIWKIANGDLK*
Ga0126380_108986372	3300010043	Tropical Forest Soil	AGDLAGFLKVRNAERERLFSRLRRSSELPDRNDTVENSPQFGIASIALSHAVTDVANVWTYIWKTTNTGTK*
Ga0126380_119159941	3300010043	Tropical Forest Soil	SQADNFAVVFYGYHDLIRKGDLNGFLKVRSEESRRLLNRLHRSSELPDRTNAIEISPQYGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0126382_105128631	3300010047	Tropical Forest Soil	NDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRSAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLAFSHAVTDVANVWVYIWKAANTNPK*
Ga0134084_100910471	3300010322	Grasslands Soil	GCAAAALNDPQLDSLVAAQAGKFTVVFYGYHERITNGDLAGFLTARREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0126376_107739312	3300010359	Tropical Forest Soil	LVAAQSNKFAVVFYGHHDLIRMGDLAGFLKVRSEEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANSNPK*
Ga0126376_123786311	3300010359	Tropical Forest Soil	ARNFAVVFYGYHDLIRAGNLDGFLKARAEEREHLFNRLRRSSELPDRFSAVELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0126372_116912222	3300010360	Tropical Forest Soil	AVAKLNDPQLDGLVAAQAGKFAVVFYGYHDLIRSGDLAGFLKARRDERERLFSRLRRSAELPDRDTAVEKSSQFGIASIAYSHAVTDVANVWFHIWKTVNGDLK*
Ga0126379_111137251	3300010366	Tropical Forest Soil	FAVVFYGYHDLIRSGNLDGFLKTRAEEREHLFNRLRRSSELPDRFSAVELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0126381_1019390201	3300010376	Tropical Forest Soil	AVAAVRDAGCAVAALNDPQLDSLVAAQSNKFAVVFYGHHDLIRMGDLAGFLKVRSEEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK*
Ga0126383_115195942	3300010398	Tropical Forest Soil	ANNFAVVFYGYHDLIRAGNLDGFLKTRADEREHLFNRLRRSSELPDRFSAVELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK*
Ga0126383_129659662	3300010398	Tropical Forest Soil	AQSSKFEVVFYGHHDLIRAGDLAGFLKARAAERERLFSRLRRSSELPNRNDTVENSPQFGIASIALSHAVTDVANVWSYIWKATNADLK*
Ga0126383_131673811	3300010398	Tropical Forest Soil	GLVAAQAAKFAVVFYGYHDLIRNGDLAGFLKIRREERERLFSRLRRSAELPDRDDAIEKSSQFGIASIAYSHAVTDVANVWFHIWKTANGDLR*
Ga0134122_111270432	3300010400	Terrestrial Soil	SLIATQANNYAVVFYGYHDLIRKGDLNGFLRIRSDESRRLLNRLHRSSELPERTTAIELSPQYGIASIAFSHAVTDVTNVWFHIWKTVNGDLR*
Ga0134121_118984881	3300010401	Terrestrial Soil	KKGDLNGFLKVRSEESRRLFDRLQRSSDLPDRTTAIETSPKYGIASIAFSHAVTDVANVWFHIWKTATADVK*
Ga0137313_10639902	3300011403	Soil	AAHANRFSVVFYGYHESILAKNLPVFLKVRAEERERLINRLRRSSELPDRETAVETSPQFGIASIALSHAVTDVANVWFLIWSSANGDVK*
Ga0137314_11226492	3300011420	Soil	NLAEFLKIRRDESQRLLQRLRRSSELPDRIEGVENSPQFGIASIAFSHAVTDVANVWYHIWKSSNGDLGN*
Ga0137452_11386212	3300011441	Soil	YGYHESILARNLPAFLKVRAEERERLINRLRRSSELPDRETAVETSPQFGIASIALSHAVTDVANVWFLIWSSANGDVK*
Ga0137421_12029282	3300012039	Soil	DSLVAAHANRFSVVFYGYHESILAKNLPVFLKVRAEERERLINRLRRSSELPDRETAVETSPQFGIASIALSHAVTDVANVWFLIWSSANGDVK*
Ga0137319_10617982	3300012167	Soil	AGCAVASMNDPQLDTLVAAQSARFAVVFYGYHSTIQSGNLAEFLKIRRDESQRLLQRLRRSSELPDRIEGVENSPQFGIASIAFSHAVTDVANVWYHIWKSSNGDLGN*
Ga0150985_1023302812	3300012212	Avena Fatua Rhizosphere	MRDTACAVAALNDPQLDSLVSIQANNFAVVFYGYHDLIRAGNLEGFLKARAEERDHLFNRLRRSSELPDRFSAIELSPQFGIASIAFSHAVTDVANV
Ga0134056_12743592	3300012397	Grasslands Soil	LAGFLTARREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWYLIWKTVNGDLK*
Ga0134059_12774022	3300012402	Grasslands Soil	YHERITNGDLAGFLTARREERDRLFTRLRRSSELPDRNNVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0137396_102845272	3300012918	Vadose Zone Soil	YGYHPLIRTGDLAGFLNARREEREHLFNRLRRSSELPDLNSVIETSPKFGIASIAYSHAVTDVANVWFHIWKAVNGDLN*
Ga0137394_101663012	3300012922	Vadose Zone Soil	NDPQLDSLVAGQAEKFAVVFYGYHDLILTGNLAGFLNLRAEERERLMKRLRRSSELPDRTNVIENSPQFGIASIAFSHAVTDVANVWLHIWKTVNGDLH*
Ga0126369_123157002	3300012971	Tropical Forest Soil	PQLDSLIAAQSNKFVVVFYGYHDLIRSGDLASFLKVRTEERERLFRRLRRSSELPNRNDVVENSPEFGIASIALSHAATDVANVWFYIWKTANGDLK*
Ga0134077_101612312	3300012972	Grasslands Soil	VFYGYHELITNGDLTGFLNARRDERERLFKRLRRFSELPDRTDVIETSSQFGIASIAYSHAVTDVANVWYLIWKTVNGDLK*
Ga0134081_101113421	3300014150	Grasslands Soil	LAGFLTARREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0134075_103290801	3300014154	Grasslands Soil	AGCAVAVLNDPQLDSLVGAQADKFTVVFYGYHDLILTGNLAGFLNLRAEERERLMKRLRRSSELPDRTNVIENSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLH*
Ga0134073_102018631	3300015356	Grasslands Soil	QLDSLVAAQAGKFTVVFYGYHERITNGDLAGFLTARREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK*
Ga0134089_102210582	3300015358	Grasslands Soil	DAGCAAATLNDPQLDSLVAAQMTKFAVVFYGYHELITNGDLTGFLNARRDERERLFKRLRRFSELPDRTDVIETSSQFGIASIAYSHAVTDVANVWYLIWKTVNGDLK*
Ga0132258_115365362	3300015371	Arabidopsis Rhizosphere	ASKFAAVFYGYHELIRTGDLPGYLNVRREERERLFSRLRRSAELPDRDSAIERSSQFGIASIAYSHAVTDVANIWFHIWKTANGDLN*
Ga0132258_136986271	3300015371	Arabidopsis Rhizosphere	DAGCAVAEMSDPRLDTLVSANSSKFAIVFYGYHPTIQAGNLTEFVKIRKDESERLLRRLRRSSELPDRYKEVETSPDFGIASIAFSHAVTDVANVWYYIWKSVNGDLREY*
Ga0132255_1019924441	3300015374	Arabidopsis Rhizosphere	FALVFYGYDEQIRAGNLANFLKTRADERQRLFTRLRRSSELPDRNTAVETSPQYGIAAIALSHAVTDVANVWFHIWRTANGEVK*
Ga0132255_1025112061	3300015374	Arabidopsis Rhizosphere	IRKGDLNGFLRVRSDESQRLLNRLHRSSELPERTTAIELSPQYGIASIAFSHAVTDVANVWFHIWKAVNGDLR*
Ga0132255_1035228901	3300015374	Arabidopsis Rhizosphere	FVAGQLDRFAVVFYGYHDLIQAGNLSAFIKTRNEERIRLNDRLQRSSELPNRSDDVETSPQFGIASIALSHAATDVANVWFYIWKTATGDVK*
Ga0182032_119853912	3300016357	Soil	RDAGCATAALNDPQLGYLVAAQSGKFAVVFYGYHELIRTGDFSGFLKVRLEACERLFSRLRRSAELPDRDTAIEKSPQFGIASIAYSHAVTDVANVWFHIWKTANGDLQ
Ga0182040_109802962	3300016387	Soil	HLDSLVAAQANKFAIVFYGYHDLIRAGNLNGFLTTRAEERERLFARLRRSSELPDRSDAVETSPNFGIASIAISHAVTDVTNIWFHIWSSANGDLK
Ga0182039_102370362	3300016422	Soil	DAAMRDAGCAAAALNDPQLDSLVATQAGNFSVVFYGYHDLIRSGDLPGFLNSRREEREHLFNRLRRSSELPDRNNVIETSPQYGIASIAYSHAVTDVANVWFHIWKEVNGDLK
Ga0134112_103814942	3300017656	Grasslands Soil	AVAAIRDAGCAAAALDDPELDPLVAANNGRFQVVFYGYHDRIQSGDLNGFLSVRAEERKRLFDRLRRSSELPDRFDAVETSPQFGIASIAFSHAVTDVVNVWFHIWKQSNGDLQ
Ga0184640_103684221	3300018074	Groundwater Sediment	VVFYGYHDLIQKGDLPGFLKIRAEESQRLLNRLNRSSELPDLTTAIETSPQYGIASIAFSHAVTDVANVWFHIWKTVNGDQR
Ga0210408_113243112	3300021178	Soil	YGYHDLIRAGNLDGFLKTRADEREHLFNRLRRSSELPDRFTTVELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK
Ga0193719_102466191	3300021344	Soil	AALNDPKLDSLVSAQASKFSVVFYGYHDLILAGDLTGFLKVRSEERDRLFSRLRRSSELPDRYDAIETSPQFGIASIAFSHAVTDVANVWFHIWKQVNGDLK
Ga0222622_111437091	3300022756	Groundwater Sediment	DLSGFLKVRSEESRRLLARLQRSSDLPDRTNAIETSPKYGIASIAFSHAVTDVANVWFHIWKTVNGDLR
Ga0247784_10300941	3300023270	Plant Litter	FVVVFYGYHDRILAGDLAGFLRARSQERELLNRRLNRSSQLPDRTTAVETSPNFGIASIAFSHAATDVVNVWFHIWKESHGDLR
Ga0207700_118635241	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRDAACAVATLNDPKLDALVAAQANNFAVVFYGYHDLIRAGNLDGFLKTRADEREHLFNRLRRSSELPDRFTTVELSPQFGIASIAFSHAVTDV
Ga0207701_105078071	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	EVVFYGFHDLIRAGRLDAFIKTRTEESTRLLNRLRRSSELPDRSNVVETSPQFGIAAIALSHAVTDVANVWFHIWKTANGDLR
Ga0207690_110221832	3300025932	Corn Rhizosphere	LDTLVSAQSSKFAVVFYGYHPTIQAGNLTEFVKVRKEESERLLRRLRRSSELPDRFSEIETSPQFGIASIAFSHAVTDVANVWYYIWKSVNGDLKE
Ga0207686_103406741	3300025934	Miscanthus Rhizosphere	SVSVAAIRDAGCAAAALNDPQLDALVSTQANKFEVVFYGYHDLIHAGDLAGFLRTRAEERDRLFGRLRRSSELPDRYNALETSSQFGIAAIAFSHAVTDVANVWLHIWKIANGDLK
Ga0207689_104730581	3300025942	Miscanthus Rhizosphere	RLDAFIKTRTEESTRLLNRLRRSSELPDRSNVVETSPQFGIAAIALSHAVTDVANVWFHIWKTANGDLR
Ga0209350_10850931	3300026277	Grasslands Soil	VAAEAAKFAVVFYGYHQLITDGDLAGFLNARREERERLFTRLRRSSELPDRNNVIETSSQFGIASIAYSHAVTDVANVWYLIWKTVNGDLK
Ga0209235_10841213	3300026296	Grasslands Soil	LNDPQLDSLVGAQADKFAVVFYGYHDLILTGNLAGFLNLRAEERERLMKRLRRSSELPDRTNVIENSPQFGIASIAFSHAVTDVANVWLHIWKTVNGDLH
Ga0209468_11414942	3300026306	Soil	GKFTVVFYGYHERITNGDLAGFLTARREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK
Ga0209472_12604702	3300026323	Soil	YGYHDLIRTGDLSGFLNARSTERERLFNRLRRSSELPNRNNVIETSPQFGIAAIAYSHAVTDVANVWFHIWKAVNGDLR
Ga0209376_10852722	3300026540	Soil	AVATLNDPQLDSLVAAEAAKFAVVFYGYHQLITDGDLAGFLNARREERERLFTRLRRSSELPDRNNVIETSSQFGIASIAYSHAVTDVANVWYLIWKTVNGDLK
Ga0207428_104160002	3300027907	Populus Rhizosphere	LVAGQVNRFEVVFYGYHDMIRAGDLPGFLNVRSEERDRLFRRLRRSSELPDLYQAIETSPVFGIASIAFSHAVTDVANVWFHIWKAADGDIK
Ga0207428_110017652	3300027907	Populus Rhizosphere	ALNDPQLDSLVAAQSSKFEVVFYGHHDLIRMGDLAGFLKVRGAEREQLFKRLRRSSELPDRGGAVENSPQFGIASLALSHAVTDVANVWVYIWKAANTNPK
Ga0209382_110490882	3300027909	Populus Rhizosphere	VAAQVNRFEVVFYGYHDMIRAGDLPGFLNVRSEERDRLFRRLRRSSELPDLYQAIETSPVFGIASIAFSHAVTDVANVWFHIWKAADGDIK
Ga0310813_103599411	3300031716	Soil	YGYHDQIRAGNLTGFLTTRADERERLFARLRRSAELPDRTDAVETSSQFGIASIALSHAVTDVSNIWFHIWKSANGDQQ
Ga0310813_115429901	3300031716	Soil	AQLSDPQIDSFVAAQANKFEVVFYGFHDLIRAGRLDAFIKTRTEESTRLLNRLRRSSELPDRSNVVETSPQFGIAAIALSHAVTDVANVWFHIWKTANGDLR
Ga0307469_110054482	3300031720	Hardwood Forest Soil	VVFYGYHERITNGDLAGFLTTRREERDRLFTRLRRSSELPDRNSEIEMSPQFGIASIAYSHAVTDVANIWFHIWKTANGDLN
Ga0307469_125421331	3300031720	Hardwood Forest Soil	DPQLDGLVAAQASKFAVVFYGYHDSIRNGDLTGFLNVRREERERLLRRLRRSAELPDRDNKVETSSQFGIASIAYSHAVTDVANIWFHIWKTVNGDLK
Ga0310917_106193012	3300031833	Soil	VGCAVAALNDPQLDALVTAQSKNFAVVFYGYHDLIQAGDLDGFLKARAVEREHLFNRLRRSSELPDKTTAVELSPQFGIASIAFSHAVTDVANVWYHIWKTVNGDLK
Ga0310909_113453791	3300031947	Soil	GCAVALLNDPQMDAFVTAQSKNFAVVFYGYHDLIQAGNLDGFLKARAAEREHLFNRLRRSSELPDKTTAVELSPQFGIASIAFSHAVTDVANVWYHIWKTANGDLR
Ga0307472_1013550902	3300032205	Hardwood Forest Soil	SVAAIRDAGCAAAELNDPQLDSLVAAQAEKFTVVFYGYHELITNGDLAGFLTVRREERDRLFTRLRRSSELPDRNSVIEMSPQFGIASIAYSHAVTDVANVWFLIWKTVNGDLK
Ga0306920_1029228921	3300032261	Soil	VLNDPQLDSLVSAQAKNFAVVFYGYHDLIRAGNLDGFLKTRAEEREHLFNRLRRSSELPDRFSAIELSPQFGIASIAFSHAVTDVANVWFHIWKTVNGDLK
Ga0310812_101169901	3300032421	Soil	FYGYHDQIRAGNLTGFLTTRADERERLFARLRRSAELPDRTDAVETSSQFGIASIALSHAVTDVSNIWFHIWKSANGDQQ
Ga0364929_0346876_3_266	3300034149	Sediment	AANFAVVFYGYHDLIRKGDLSGFLKVRSEESRRLLARLQRSSDLPDRTNAIETSPKYGIASIAFSHAVTDVANVWFHIWKTVNGDLR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign