Metagenome Family F072509

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072509
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	63 residues
Representative Sequence	MKMNGTGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLA
Number of Associated Samples	102
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.21 %
% of genes near scaffold ends (potentially truncated)	95.04 %
% of genes from short scaffolds (< 2000 bps)	93.39 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.215 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (14.050 % of family members)
Environment Ontology (ENVO)	Unclassified (28.099 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.240 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.11% β-sheet: 0.00% Coil/Unstructured: 48.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF04392	ABC_sub_bind	14.88
PF05164	ZapA	4.13
PF00005	ABC_tran	2.48
PF02518	HATPase_c	2.48
PF07690	MFS_1	2.48
PF03401	TctC	1.65
PF00072	Response_reg	1.65
PF00107	ADH_zinc_N	1.65
PF00106	adh_short	0.83
PF00496	SBP_bac_5	0.83
PF01979	Amidohydro_1	0.83
PF13336	AcetylCoA_hyd_C	0.83
PF02538	Hydantoinase_B	0.83
PF12399	BCA_ABC_TP_C	0.83
PF13483	Lactamase_B_3	0.83
PF13793	Pribosyltran_N	0.83
PF13333	rve_2	0.83
PF14235	DUF4337	0.83
PF03476	MOSC_N	0.83
PF00378	ECH_1	0.83
PF01471	PG_binding_1	0.83
PF05988	DUF899	0.83
PF13416	SBP_bac_8	0.83
PF06482	Endostatin	0.83
PF03147	FDX-ACB	0.83
PF01799	Fer2_2	0.83
PF01548	DEDD_Tnp_IS110	0.83
PF07883	Cupin_2	0.83
PF08240	ADH_N	0.83
PF01266	DAO	0.83
PF00723	Glyco_hydro_15	0.83
PF12867	DinB_2	0.83
PF03466	LysR_substrate	0.83
PF02653	BPD_transp_2	0.83
PF03186	CobD_Cbib	0.83
PF05433	Rick_17kDa_Anti	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	14.88
COG3027	Cell division protein ZapA, inhibits GTPase activity of FtsZ	Cell cycle control, cell division, chromosome partitioning [D]	4.13
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.65
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.65
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	0.83
COG1270	Cobalamin biosynthesis protein CobD/CbiB	Coenzyme transport and metabolism [H]	0.83
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.83
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.83
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.83

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.21 %
Unclassified	root	N/A	5.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.21 %
Unclassified	root	N/A	5.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.21 %
Unclassified	root	N/A	5.79 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	57.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.97 %
Unclassified	root	N/A	5.79 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	57.02 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.88 %
Unclassified	root	N/A	5.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	57.02 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.92 %
Unclassified	root	N/A	5.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.61 %
Unclassified	root	N/A	5.79 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	4.13 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.83 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.79 %
Unclassified	root	N/A	5.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.31 %
Candidatus Rokubacteria bacterium 13_2_20CM_69_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_2_20CM_69_10	0.83 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.13 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.31 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.83 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.83 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.83 %
Candidatus Rokubacteria bacterium 13_2_20CM_69_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_2_20CM_69_10	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.31 %
Bradyrhizobium sp. WSM471	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM471	0.83 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.83 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.83 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.83 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.83 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	0.83 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.83 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.83 %
Candidatus Rokubacteria bacterium 13_2_20CM_69_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_2_20CM_69_10	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_1106_length_1347_cov_7.455828	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1379	Open in IMG/M
3300000955\|JGI1027J12803_106807387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1339	Open in IMG/M
3300001431\|F14TB_100020947	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300002568\|C688J35102_120639020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1279	Open in IMG/M
3300004480\|Ga0062592_101551494	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300004633\|Ga0066395_10389756	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005332\|Ga0066388_100665422	All Organisms → cellular organisms → Bacteria → Proteobacteria	1654	Open in IMG/M
3300005332\|Ga0066388_100670692	Not Available	1648	Open in IMG/M
3300005332\|Ga0066388_100834580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1509	Open in IMG/M
3300005332\|Ga0066388_108172214	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	522	Open in IMG/M
3300005332\|Ga0066388_108573761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	509	Open in IMG/M
3300005440\|Ga0070705_101120497	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	645	Open in IMG/M
3300005444\|Ga0070694_101940614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	503	Open in IMG/M
3300005450\|Ga0066682_10106468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1764	Open in IMG/M
3300005454\|Ga0066687_10628638	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005467\|Ga0070706_100696139	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	943	Open in IMG/M
3300005518\|Ga0070699_101507808	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300005518\|Ga0070699_101966640	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	535	Open in IMG/M
3300005530\|Ga0070679_101663069	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300005536\|Ga0070697_100423684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1157	Open in IMG/M
3300005546\|Ga0070696_101245265	Not Available	630	Open in IMG/M
3300005549\|Ga0070704_100160239	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300005764\|Ga0066903_102653722	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300005842\|Ga0068858_100216369	All Organisms → cellular organisms → Bacteria → Proteobacteria	1814	Open in IMG/M
3300006034\|Ga0066656_10212088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1236	Open in IMG/M
3300006034\|Ga0066656_10665679	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	670	Open in IMG/M
3300006049\|Ga0075417_10174219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1010	Open in IMG/M
3300006194\|Ga0075427_10063402	Not Available	650	Open in IMG/M
3300006797\|Ga0066659_11680716	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	535	Open in IMG/M
3300006844\|Ga0075428_100175859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2318	Open in IMG/M
3300006844\|Ga0075428_102018574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	597	Open in IMG/M
3300006845\|Ga0075421_100535926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1385	Open in IMG/M
3300006845\|Ga0075421_101720914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300006852\|Ga0075433_11867294	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300006881\|Ga0068865_101024049	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300006904\|Ga0075424_102526355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	538	Open in IMG/M
3300007255\|Ga0099791_10086651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1432	Open in IMG/M
3300009012\|Ga0066710_100738485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1504	Open in IMG/M
3300009147\|Ga0114129_11187111	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300009156\|Ga0111538_10119690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3344	Open in IMG/M
3300009162\|Ga0075423_10478556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1309	Open in IMG/M
3300009174\|Ga0105241_12259903	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	540	Open in IMG/M
3300009792\|Ga0126374_10514132	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	866	Open in IMG/M
3300010043\|Ga0126380_11123260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	672	Open in IMG/M
3300010043\|Ga0126380_11217904	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300010043\|Ga0126380_11931456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	538	Open in IMG/M
3300010047\|Ga0126382_10407642	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1063	Open in IMG/M
3300010047\|Ga0126382_10836961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	789	Open in IMG/M
3300010047\|Ga0126382_12394057	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	512	Open in IMG/M
3300010166\|Ga0126306_10572329	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300010303\|Ga0134082_10307334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_2_20CM_69_10	665	Open in IMG/M
3300010358\|Ga0126370_11813475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	591	Open in IMG/M
3300010359\|Ga0126376_10865969	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	889	Open in IMG/M
3300010360\|Ga0126372_10256855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1504	Open in IMG/M
3300010360\|Ga0126372_10287686	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300010361\|Ga0126378_10314035	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1672	Open in IMG/M
3300010371\|Ga0134125_11802690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	665	Open in IMG/M
3300010398\|Ga0126383_10561283	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1208	Open in IMG/M
3300010398\|Ga0126383_11050778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	903	Open in IMG/M
3300010398\|Ga0126383_12887686	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	561	Open in IMG/M
3300010401\|Ga0134121_12738242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	538	Open in IMG/M
3300010403\|Ga0134123_11265841	Not Available	771	Open in IMG/M
3300012203\|Ga0137399_10911215	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	740	Open in IMG/M
3300012204\|Ga0137374_10521252	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	919	Open in IMG/M
3300012349\|Ga0137387_10012608	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	5023	Open in IMG/M
3300012351\|Ga0137386_10047711	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2950	Open in IMG/M
3300012362\|Ga0137361_10393023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1273	Open in IMG/M
3300012362\|Ga0137361_11698481	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	551	Open in IMG/M
3300012363\|Ga0137390_11265603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	684	Open in IMG/M
3300012922\|Ga0137394_10217383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1634	Open in IMG/M
3300012925\|Ga0137419_11068826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	671	Open in IMG/M
3300012927\|Ga0137416_10392688	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1173	Open in IMG/M
3300012929\|Ga0137404_10213241	Not Available	1641	Open in IMG/M
3300012948\|Ga0126375_11511912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	574	Open in IMG/M
3300012957\|Ga0164303_10244942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1023	Open in IMG/M
3300012958\|Ga0164299_11661119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300012961\|Ga0164302_11683033	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	531	Open in IMG/M
3300012971\|Ga0126369_13534188	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	512	Open in IMG/M
3300012975\|Ga0134110_10277247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300012977\|Ga0134087_10239010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	828	Open in IMG/M
3300012987\|Ga0164307_11180834	Not Available	633	Open in IMG/M
3300013297\|Ga0157378_10121707	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300013308\|Ga0157375_11011651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	970	Open in IMG/M
3300013308\|Ga0157375_13494766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	523	Open in IMG/M
3300014154\|Ga0134075_10291202	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	710	Open in IMG/M
3300015356\|Ga0134073_10102253	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	849	Open in IMG/M
3300016319\|Ga0182033_11628357	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	584	Open in IMG/M
3300016357\|Ga0182032_10308902	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300016422\|Ga0182039_11831822	Not Available	556	Open in IMG/M
3300017974\|Ga0187777_11465153	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300021384\|Ga0213876_10454388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM471	681	Open in IMG/M
3300021405\|Ga0210387_10192632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1765	Open in IMG/M
3300021478\|Ga0210402_11445515	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	615	Open in IMG/M
3300025910\|Ga0207684_10660341	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300025910\|Ga0207684_10802427	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	796	Open in IMG/M
3300025915\|Ga0207693_10096293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2320	Open in IMG/M
3300025916\|Ga0207663_10003305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7865	Open in IMG/M
3300025917\|Ga0207660_10896852	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300025923\|Ga0207681_11789834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	513	Open in IMG/M
3300025930\|Ga0207701_10383046	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1213	Open in IMG/M
3300025940\|Ga0207691_10964887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	712	Open in IMG/M
3300026023\|Ga0207677_11005105	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	756	Open in IMG/M
3300026320\|Ga0209131_1326165	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	570	Open in IMG/M
3300026497\|Ga0257164_1032378	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300026514\|Ga0257168_1070233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	773	Open in IMG/M
3300027071\|Ga0209214_1031864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	697	Open in IMG/M
3300027862\|Ga0209701_10242099	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300027873\|Ga0209814_10144733	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1019	Open in IMG/M
3300027909\|Ga0209382_10125555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2990	Open in IMG/M
3300028673\|Ga0257175_1042326	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300030620\|Ga0302046_10940848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	690	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1032939	All Organisms → cellular organisms → Bacteria → Proteobacteria	1238	Open in IMG/M
3300031573\|Ga0310915_10678156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	728	Open in IMG/M
3300031740\|Ga0307468_100392579	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1055	Open in IMG/M
3300031770\|Ga0318521_10879739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	547	Open in IMG/M
3300031820\|Ga0307473_11474122	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	515	Open in IMG/M
3300031910\|Ga0306923_11667819	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	660	Open in IMG/M
3300032001\|Ga0306922_10971625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	878	Open in IMG/M
3300032059\|Ga0318533_10117256	All Organisms → cellular organisms → Bacteria → Proteobacteria	1859	Open in IMG/M
3300032174\|Ga0307470_10330625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1048	Open in IMG/M
3300032174\|Ga0307470_11518666	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.99%
Host-Associated	Host-Associated	19.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.99%
Plants	Host-Associated → Plants	19.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.48%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.50%
Loam	Environmental → Terrestrial → Soil → Loam	19.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.05%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.48%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.13%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.65%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02534720	2140918013	Soil	MRIPLTVLVVGLSLLAMPAPLESQKAPGMSRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNLII
JGI1027J12803_1068073872	3300000955	Soil	MKMNGTGMRIGVAILALGVCLLAIPTSQAPKAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKN
F14TB_1000209471	3300001431	Soil	MRIRATLLALGIILLAMPTALEAQRAAGMSRIGWLEVCGPGPRRPHFDIFRARLAEAGYVEGKN
C688J35102_1206390201	3300002568	Soil	MKMSRTGVAFTVAVLALGAILFGIATSQAQKVTGKSRVGWLEVCAPGPQRPNFDIFRARLAELGY
Ga0062592_1015514942	3300004480	Soil	MALWIGVVLLILNAAVLALPSRLEAQKKVTGTARVGWLEVCGPGPRRPHFDTFRARLAEQGYVEGKNLIV
Ga0066395_103897561	3300004633	Tropical Forest Soil	MKMNGIGMRLGATIVALGVCLFAMPTLLEAQKATGIARVGWLEVCSPGPRRPNFDIFRAR
Ga0066388_1006654221	3300005332	Tropical Forest Soil	MKVNEPSRRIVAMALVLVLSLLAIPTWLEAQRAPGISRVGWLEVCGPGPRRTNFDIFRARLAEQGYVE
Ga0066388_1006706924	3300005332	Tropical Forest Soil	MKMNGMSMRIWVTVLALGVSILAMSTSLEAQQKAAGISRVGWLEVCDPGPRRPNFDVFRSRIAELG
Ga0066388_1008345801	3300005332	Tropical Forest Soil	MRGNGTGMRIGVVVLALGLGVFAMSTALEAQKAAGMARVGWLEVCGPGPKRPHFDIFRA
Ga0066388_1081722142	3300005332	Tropical Forest Soil	MKMNGIGIRIGATIVALGVCLFAIPTLLEAQKAAGRARVGWLEVCSPGPRRPNFDMFRARLAELG
Ga0066388_1085737612	3300005332	Tropical Forest Soil	MKMKGPDMWIGMTVLSVAVSLLAIPTSHAQRPAGISRIGWLEVCGPGPRRPNFEIFRGRLAELGYVEGKN
Ga0070705_1011204973	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKLNGIAMRIGVTVLALGVSLLAMQTSLEAQRATGISRIGWLEVCGPGPRRPHFDIFR
Ga0070694_1019406141	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKMNGTGMRIGVAILALGVCLLAIPTSQAPKAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNLIV
Ga0066682_101064683	3300005450	Soil	MRIGVAVLALGASLLAIPSLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRAR
Ga0066687_106286381	3300005454	Soil	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQRPSGISRVGWLEVCGPGPRRPNLE
Ga0070706_1006961391	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRMNRTGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIF
Ga0070699_1015078081	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNGKGVRIALTLLAIGLSLFAMPMSLEAQKAPGVARVGWLEVCGPGPKRPHFDI
Ga0070699_1019666402	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKMNGTGMRIGVAVLALGVSLLAIPTSQAPQAAGISRVGWLEVCGPGPRRPHFDIFRA
Ga0070679_1016630691	3300005530	Corn Rhizosphere	MAVNGKGVRIALTLLAIGLSLFAMPMSLEAQKAPGVARVGWLEVCGPGPKRPHFDIFRARLAELGY
Ga0070697_1004236841	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKNRMGLWIGVTLLILGMPLLTLPNQLGAQRATRTVRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNL
Ga0070696_1012452651	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRVNGTGIRIGVAVLALGLSVFAMSTAPEAQKAAGIARVGWLEVCGPGPKRPHFDIFRAR
Ga0070704_1001602391	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKMNGTGMRIAVTVLVLGLSLLAVPTLLDAPRAAGISRVGWLEVCSPGPRRPHFDIFRARLAE
Ga0066903_1026537222	3300005764	Tropical Forest Soil	MTMRQADIWIGVTVLAVAVSLVATATSRAQRPAGISRVGWLEVCGPGPQRPSFEIF
Ga0068858_1002163693	3300005842	Switchgrass Rhizosphere	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKAAGISRVGWLEVCGPGPRRPNLEIFRGRLAELGYVEGKNL
Ga0066656_102120881	3300006034	Soil	MNRTGMRIGLTVLALGVSLLAIPTLLEAQKAVRISRVGWLEVCGPGPRRPHFDIFRARL
Ga0066656_106656791	3300006034	Soil	MKMNGPGMRIGVAVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRAR
Ga0075417_101742191	3300006049	Populus Rhizosphere	MKVVMMRIGLAVLALGVSLLAMPSLPAAQKAAGISRVGWLEVCGPAPRRPNFDIFR
Ga0075427_100634022	3300006194	Populus Rhizosphere	MKMNEIAMRIGVTVLALGVCLIAMQTSPEAQRAAGISRVGWLEVCGPGPRRPNLEIF
Ga0066659_116807162	3300006797	Soil	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKPAGISRVGWLEVCGPGPRRPNLEIFRGRLAELGYVEG
Ga0075428_1001758594	3300006844	Populus Rhizosphere	MKVVMMRIGLAVLALGVSLLAMPSLPAAQKAAGISRVGWLEVCGPAPRRPNFDIFRARLA
Ga0075428_1020185741	3300006844	Populus Rhizosphere	MKLNGIAMRIGVTVLALGVSLLAMQTSLEAQRATGISRIGWLEVCGPGPRRPHF
Ga0075421_1005359263	3300006845	Populus Rhizosphere	MALWIGVVLLILNAIVLALPDRLEAQKRVTGTARVGWLEVCGPGPRRPHFDTFRARLAEQGYVEGKNLIVE
Ga0075421_1017209142	3300006845	Populus Rhizosphere	MKMNGTGMRIGVTLLALGASLLAMPTAQAQKAAGMSRVGWLEVCGPGPRRPHFDIFRARL
Ga0075433_118672942	3300006852	Populus Rhizosphere	MTAQRKSVHKLIAMKMNGTGMRIGVTVLALGVSLLAIPTLLEAQKAARISRVGWLEVCGPGPRRPHFDIFR
Ga0068865_1010240492	3300006881	Miscanthus Rhizosphere	MKMNGRIGVAMLALGVSLLTIPTSQAPKAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNLIV
Ga0075424_1025263551	3300006904	Populus Rhizosphere	MKMNEIAMRIGVTVLALGVCMIAMQASPEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNL
Ga0099791_100866513	3300007255	Vadose Zone Soil	MVVLLGVSLLVIPTQLGAQRAAGIARVGWLEVCGPGPQRPHFDIFRARLAEQGYVEG
Ga0066710_1007384851	3300009012	Grasslands Soil	MKMNGTGMRIGVTVLALGVSLLAIPTMLEAPRAAGIARVGWLEVCGPGPRRPHFDIFRARLAEQGYV
Ga0114129_111871112	3300009147	Populus Rhizosphere	MAGWIGVVLLILNAAVLALPSRLEAQKKVTGTARVGWLEVCGPGPRRPHFDTFRARLAEQGYVEGKNLIVE
Ga0111538_101196901	3300009156	Populus Rhizosphere	MKMNEIAMRIGVTVLALGVCLIAMQTSPEAQRAAGISRVGWLEVCGPGPRRPNFDIFRARLAEQGYVEG
Ga0075423_104785563	3300009162	Populus Rhizosphere	MRVNGTGIRIGVAVLALGLSVFAMSTEPEAQKAAGIARVGWLEVCGPGPKRPHFDIFRTRLA
Ga0105241_122599031	3300009174	Corn Rhizosphere	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKAAGISRVGWLEVCGPGPRRPNLEIFRGRLAELGYVEG
Ga0126374_105141322	3300009792	Tropical Forest Soil	MKMQGADTSIRMTVLAVAVSLFAMATSHAQTPAGISRVGWLEVCGPGPRRPHF
Ga0126380_111232601	3300010043	Tropical Forest Soil	MRANRAAMRTWVTILALAVSMLAVPTSLEAQQKAAGISRVGWLEVCRPGARRANLDIFRGRLAELGCP*
Ga0126380_112179041	3300010043	Tropical Forest Soil	MKMKGADISIRMTVLAVAASLFAMATSHAQTPAGISRVGWLEVCGPGPRRPHFEIFRGRLAE
Ga0126380_119314562	3300010043	Tropical Forest Soil	MKMQGTGMRIGVTVLVLGVSLLSISASHAQKPAGISRVGWLEVCGPGPRRPQFDIFRRRL
Ga0126382_104076424	3300010047	Tropical Forest Soil	MKMNARRVRIWVVPLLVLGVSSLATPTFLEAQRAEKIARVGWLEVCGPGPRRPNLDIFRARLAELGYVEGKNL
Ga0126382_108369611	3300010047	Tropical Forest Soil	MPEDHVMNVNGAGMRIGVAALALGLSFFTISTSLEAQKATGITRVGWLEVCSPGPKRPHFDTFRTRLAELGYSEGKNLIIEQRFADCHYDRM
Ga0126382_123940571	3300010047	Tropical Forest Soil	MKMQGADTSIRMTVLAVAVSLFAMATSRAQTPAGISRVGWLEVCGPGPRRPHFEIFR
Ga0126306_105723291	3300010166	Serpentine Soil	MTTNGTGLRIGLTVLALGASLLAIPASQAQRAAGIARVGWLEVCGPAPRRPHFDL
Ga0134082_103073341	3300010303	Grasslands Soil	MISHKTGMRIGLTALALSVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIF
Ga0126370_118134752	3300010358	Tropical Forest Soil	MKMRRADIWIGVTVLAVAVSLVATATSRAQRPAVISRVGWLEVCGPGPQRPSFEIFRGRLA*
Ga0126376_108659692	3300010359	Tropical Forest Soil	MRRIGLAVVLALGASLLAVPILVEAQSPSRMWRVGWLEVCGPGPQRPHFDIF
Ga0126372_102568551	3300010360	Tropical Forest Soil	MKMQGADTSIRMTVLAVAVSLFAMATSHAQTPAGISRVGWLEVCGPGPRRPHFEIFRGR
Ga0126372_102876861	3300010360	Tropical Forest Soil	MKMKGADISIRMTVLAVAASLFAMATSHAQTPAGISRVGWLEVCGPGPRRPHFEIFRGR
Ga0126378_103140351	3300010361	Tropical Forest Soil	MKMNGIAMRIGVTIVALGVCLFAIPTLLEAQKAAGIARVGWLEVCSPGPRRPNFDIFRARLAERGYVE
Ga0134125_118026901	3300010371	Terrestrial Soil	MKMKRADMLIGMTVLAIAVSLLVIPTSHAQKPTGMSRVGWLEVCGPGPRRPNLEI
Ga0126383_105612831	3300010398	Tropical Forest Soil	MRIGLTVLALCVSLLATPTLPEAQKAAGTSLVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNL
Ga0126383_110507784	3300010398	Tropical Forest Soil	MKMNGTGIRIGMSLLALGISLFAVPTLLVAQRDTGTSRVGWLEVCGPGPRRPHFDTFRARLAEQGYIEG
Ga0126383_128876861	3300010398	Tropical Forest Soil	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKPAGISRVGWLEVCGPGPRRPNLEIFRGRLAE
Ga0134121_127382422	3300010401	Terrestrial Soil	MRIGVAVLALGVSLLAIPTSQAPQAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGK
Ga0134123_112658412	3300010403	Terrestrial Soil	MKMKGTGMRIGVTLLALAVSLLASPNLVEAQRAAGIARVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNLIL
Ga0137399_109112151	3300012203	Vadose Zone Soil	MKMNGTGMRIGVTVLALGVSLLAIPTVLEAQRAAGISRVGWLEVCGPGPGRPHF
Ga0137374_105212522	3300012204	Vadose Zone Soil	MKMNGTGMRIGVTLLALGVSLLAIPTSQAQKAAGISRVGWLEVCGPGPRRPHFDIFRARLADQGYVEGKRRESSPKP*
Ga0137387_100126081	3300012349	Vadose Zone Soil	MKMNGPGMRIGVAVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHF
Ga0137386_100477114	3300012351	Vadose Zone Soil	MKMNGTGMRIGLAVLALGASLLAIPTSLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEHGYVEGKNL
Ga0137361_103930231	3300012362	Vadose Zone Soil	MKMNGTGMRIGVVVLALGASLLAIPSLLEAQRAAGMSRVGWLEVCGPGPRRPHFDIFRAR
Ga0137361_116984811	3300012362	Vadose Zone Soil	MKVNRTGLQIGVTVLALGVSLLAMPASLEAQKAGGISRVGWLAVCGPGPRRPNFDIFRGRLAELGYAE
Ga0137390_112656031	3300012363	Vadose Zone Soil	MKTNWTGMRIGVTVLALGVSLLAIPTLLEAQRTAGISRVGWLEVCGPGPRRPHFDTFRARLAE
Ga0137394_102173831	3300012922	Vadose Zone Soil	MKMNGPGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRA
Ga0137419_110688261	3300012925	Vadose Zone Soil	MKMNGPGMRIGVAVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEG
Ga0137416_103926882	3300012927	Vadose Zone Soil	MKMKGTGMRIGVTVLALGVSLPAVPTSIEAQKVAGVSRVGWLEVCGPSPRRPHFDSFTARLAEQGYVEAKNLILEQRFADCR
Ga0137404_102132414	3300012929	Vadose Zone Soil	MKMNGTAMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQG
Ga0126375_115119122	3300012948	Tropical Forest Soil	MKMNGIGLRIGATIIALGVCLFAIPTLLEAQKAAGRARVGWLEVCSPGPRRPNFDMFRARLAELGYVEGK
Ga0164303_102449422	3300012957	Soil	MKVSWMGVRIGMTVLALGLGLFAVPTSLTAQKAEGVSRVGCLEVCGPAPRRPNFGIFRARLAGLGYVEGKNLH
Ga0164299_116611191	3300012958	Soil	MKVSWMGVRIGMTVLALGLGLFAVPTSLTAQKAEGVSRVGWLEVCGPAPRRPNYDIF
Ga0164302_116830331	3300012961	Soil	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKPTGMSRVGWLEVCGPGPRRPNLEIFRGRLAELGYVEGKNLI
Ga0126369_135341882	3300012971	Tropical Forest Soil	MKMNGIAMRIGVTIVSLGVCLFAIPTLLEAQKAAGIARVGWLEVCSPGPRRPNFDIF
Ga0134110_102772472	3300012975	Grasslands Soil	MKMNGPGMRIGVAVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEY
Ga0134087_102390101	3300012977	Grasslands Soil	MKMNGPGMRIGVAVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQRYV
Ga0164307_111808342	3300012987	Soil	MRVNGTAIRIGVAVLALGLSVFAMSTAVEAQKAAGMARVGWLEVCSPGPK
Ga0157378_101217072	3300013297	Miscanthus Rhizosphere	MKMNGTGMRIGVAILALGVSLLAMPTSQAPKAAGISRVGWLEVCGPGPRRPHFDIFRARLS*
Ga0157375_110116511	3300013308	Miscanthus Rhizosphere	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQEAAGISRVGWLEVCGPGPRRPNLEIFR
Ga0157375_134947661	3300013308	Miscanthus Rhizosphere	MKNRMDLWIGVALLIFNVTLLALPKQLEAQRAAGVSRVGWLEVCGPGPRRPHFDIFRARLAVKSQQNVHPRPL
Ga0134075_102912022	3300014154	Grasslands Soil	MKMNATGMRIGVTVLALGVSLLAIPTLLEAQRGAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEG
Ga0134073_101022532	3300015356	Grasslands Soil	MRIGVAVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRVRLAEQGYVEG
Ga0182033_116283572	3300016319	Soil	MKMNGAGMRIGVTVLALVVSLLAIPTSLQAQRAVGISRVGWLEVCGPGPRRPHFDIFRAHLAEQGYVEGKNLII
Ga0182032_103089022	3300016357	Soil	MKMKRTGMWIGVTVLAVAVSLLAIPTSHAQKAAGISRVGWLEVCGPGPQRPNFD
Ga0182039_118318221	3300016422	Soil	MKMKGIGTWIGVTVLAVALGPLAILTSRAQSAAGISRVGWLEVCGPGPQRANFDIFRRRLAELGYVE
Ga0187777_114651531	3300017974	Tropical Peatland	MKLKATGMWIGATVLAIAVGPLGILASHAQRAAAISRVGWLEVCGPGPQRPNFEIFRRRLAELGYVE
Ga0213876_104543881	3300021384	Plant Roots	MQVSWTGFRIEMTALALVASLLFIPTSQSAHGAERVWRVGWLEVCGPAPRRLNFEIFR
Ga0210387_101926321	3300021405	Soil	MKMNGTSMLIGVTVALGVSLLAISTSEAQRATGVSRVGWLEVCGPAPRRPHFDIFRRRLGEL
Ga0210402_114455152	3300021478	Soil	MKMNGTSMLIGVTVLALGVSLLAISTSEAQRATGVSRVGWLEVCGQARRPYFDIFRRRLGELGYVEGK
Ga0207684_106603411	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKMNGTGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIF
Ga0207684_108024271	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNNRMHLWIGVTVLVLGVILLALPNQLEAQRAAGISRVGWLEVCGPGPRRPNFDIFRARLAEQGYVEGKN
Ga0207693_100962933	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKPAGISRVGWLEVCGPGPRRPHLEIFRGRLAELGYVEGKNLL
Ga0207663_100033051	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKVSWMGVRIGMTVLALGLGLFAVPTSLTAQKAEGVSRVGWLEVCGPAPRRPNFDIFRARLAELGYA
Ga0207660_108968522	3300025917	Corn Rhizosphere	MAVNGKGVRIALTLLAIGLSLFAMPMSLEAQKAPGVARVGWLEVCGP
Ga0207681_117898341	3300025923	Switchgrass Rhizosphere	MKLKGADMWIGMTVLAVAVSLLAIPTSQAQKPAGMSRVGWLEVCGPGPQRPNLEIFRGLPTHGS
Ga0207701_103830463	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKNRMDLWIGVALLIFNVTLLALPKQLEAQRAAGVSRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNLIF
Ga0207691_109648872	3300025940	Miscanthus Rhizosphere	EMPEDRAMRVNGTGMRIGVAVLALGLSVFAMSTALEAQKAAGIARVGWLEVCGTGPKRPHFDISELAWRS
Ga0207677_110051052	3300026023	Miscanthus Rhizosphere	MKLKGADIWIVVLAVAVSLLAIPTSHAQKAAGISRVGWLEVCGPGPRRPNLE
Ga0209131_13261652	3300026320	Grasslands Soil	MKKKNGMGPWTGVALLVLGVTLLALPNRLEAQRATGTVRVGWLEVCGPGPRRPHFDIFRARLAEHGYVEGKNLIL
Ga0257164_10323782	3300026497	Soil	MKMNGKGIWIGVTVLALGVGLLAIPPSQVLSAAAISRVGWLEVCAPGPRRPHFDIFRARLAELGYVEGKNL
Ga0257168_10702331	3300026514	Soil	MKMNRIGIRIGVPVVLLGVSLLVIPTQLGAQRAAGMARVGWLEVCGPGPRRPNFDIFRARLAELGY
Ga0209214_10318642	3300027071	Forest Soil	MKVSWMGVRIGMTVLALGLGLFAVPTSLTAQKAEGVSRVGWLEVCGPAPRRPNFDIFRA
Ga0209701_102420991	3300027862	Vadose Zone Soil	MKMNGTGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRAR
Ga0209814_101447331	3300027873	Populus Rhizosphere	MKVVMMRIGLAVLALGVSLLAMPSLPAAQKAAGISRVGWLEVCGPAPRRPNFDIF
Ga0209382_101255551	3300027909	Populus Rhizosphere	MKMNGAGMRIAVALLALGLSLFAISTAQAQKAAGISRVGWLEVCGPGPRRPHFDIFRARLAD
Ga0257175_10423263	3300028673	Soil	MKMNGTGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNL
Ga0302046_109408482	3300030620	Soil	MKFNGTGVRIGLAIPALVAMLLAMPGPLGAQGTAAMSRVGWLEVCGPGPRRPHFDTFRARLAALGY
(restricted) Ga0255312_10329391	3300031248	Sandy Soil	MKMNGTGMRIGVTVLALGVSLLAIPTLLEAQRAAGISRVGWLEVCGPGPRRPHFDIFRARLA
Ga0310915_106781561	3300031573	Soil	MKVSKTGLRIGVTVLAIGVSLSAIPTSLEAQRATGISRVGWLEVCGPGPRRPHFDIFRGRLAEL
Ga0307468_1003925793	3300031740	Hardwood Forest Soil	MQLNGTGLRIAVTVLALGVSLLALPTSQAPKAAGISRVGWLEVCGPGPRRPHFDIFRARLAEQGYVEGKNLIVEQ
Ga0318521_108797393	3300031770	Soil	MKIKRTGMWIGVTVLAVAVSLLAIPTSHAQKAAGISRVGWLEVCGPGPQRPNFDIF
Ga0307473_114741222	3300031820	Hardwood Forest Soil	MKMNGTGMRIGVAGLALGVSLLALPTWLEAQKAAGISRVGWLEVCGPGPRRPHFDIFRARLA
Ga0306923_116678191	3300031910	Soil	MGVRIGMTVLALGLSLFAIPTSLTAQKAERVSRVGWLEVCGPGPRRPNFDI
Ga0306922_109716251	3300032001	Soil	MKVSWMGVRIGMTALALGVSLLAMPTSLMAQRADGISRVGWLEVCGPGPSRPHFDIF
Ga0318533_101172561	3300032059	Soil	MKMNGAGMRIGVTVLALVVSLLAIPTSLQAQRAVGISRVGWLEVCGPGPRRPHFDIFRAHLAEQGYV
Ga0307470_103306251	3300032174	Hardwood Forest Soil	MKMKGADMWIGMTVLAVAVSLLAIPTSHAQKPTGMSRVGWLELCGPGPQRPNLEIFRGRLAQ
Ga0307470_115186661	3300032174	Hardwood Forest Soil	MRVNGTGIRIGVAVLALGLSVFAMSTALEAQKAAGIARVGWLEVCGPGPKRPH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters