Metagenome / Metatranscriptome Family F072577

Basic Information
Family ID	F072577
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	40 residues
Representative Sequence	RDLIRERLALPGAPQMLLQLGLAHTAHATARRPPADLIEP
Number of Associated Samples	100
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.69 %
% of genes near scaffold ends (potentially truncated)	94.21 %
% of genes from short scaffolds (< 2000 bps)	87.60 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Most Common Taxonomy
Group	Bacteria (75.207 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.711 % of family members)
Environment Ontology (ENVO)	Unclassified (43.802 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.843 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.18% β-sheet: 0.00% Coil/Unstructured: 83.82%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01734	Patatin	7.44
PF12900	Pyridox_ox_2	7.44
PF07411	DUF1508	4.13
PF01472	PUA	4.13
PF08044	DUF1707	4.13
PF01522	Polysacc_deac_1	3.31
PF00582	Usp	1.65
PF06224	HTH_42	1.65
PF00583	Acetyltransf_1	1.65
PF02036	SCP2	1.65
PF00479	G6PD_N	1.65
PF06689	zf-C4_ClpX	1.65
PF09363	XFP_C	1.65
PF01915	Glyco_hydro_3_C	1.65
PF07729	FCD	0.83
PF02604	PhdYeFM_antitox	0.83
PF05532	CsbD	0.83
PF13561	adh_short_C2	0.83
PF00571	CBS	0.83
PF00440	TetR_N	0.83
PF04542	Sigma70_r2	0.83
PF07992	Pyr_redox_2	0.83
PF13247	Fer4_11	0.83
PF08818	DUF1801	0.83
PF05762	VWA_CoxE	0.83
PF08327	AHSA1	0.83
PF14031	D-ser_dehydrat	0.83
PF13631	Cytochrom_B_N_2	0.83
PF01381	HTH_3	0.83
PF03706	LPG_synthase_TM	0.83
PF01654	Cyt_bd_oxida_I	0.83
PF00679	EFG_C	0.83
PF01872	RibD_C	0.83
PF02687	FtsX	0.83
PF07883	Cupin_2	0.83
PF08240	ADH_N	0.83
PF07596	SBP_bac_10	0.83
PF01906	YbjQ_1	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	7.44
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	7.44
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	7.44
COG3422	Uncharacterized conserved protein YegP, UPF0339 family	Function unknown [S]	4.13
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	3.31
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	1.65
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	1.65
COG2165	Type II secretory pathway, pseudopilin PulG	Cell motility [N]	1.65
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	1.65
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.83
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.83
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.83
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.83
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.83
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.83
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.83
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.83
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.83
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.21 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.21 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.21 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	68.60 %
Unclassified	root	N/A	24.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	65.29 %
Unclassified	root	N/A	24.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38.02 %
Unclassified	root	N/A	24.79 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.96 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.31 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.65 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.65 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.65 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.83 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.48 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.65 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.65 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.65 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.83 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.48 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.65 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	1.65 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.65 %
Labedaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea	0.83 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.83 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.48 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	1.65 %
Mycolicibacterium helvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium helvum	1.65 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.65 %
Geodermatophilus sabuli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus sabuli	0.83 %
Labedaea rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea → Labedaea rhizosphaerae	0.83 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.48 %
Nocardioides sp. CF8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. CF8	1.65 %
Mycolicibacterium helvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium helvum	1.65 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.65 %
Geodermatophilus sabuli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus sabuli	0.83 %
Labedaea rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea → Labedaea rhizosphaerae	0.83 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_101866566	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300005440\|Ga0070705_101345853	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005468\|Ga0070707_101054623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	778	Open in IMG/M
3300005538\|Ga0070731_10372634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	949	Open in IMG/M
3300006175\|Ga0070712_101807383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300006806\|Ga0079220_10154193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1271	Open in IMG/M
3300009792\|Ga0126374_10558656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	837	Open in IMG/M
3300010120\|Ga0127451_1026037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300010120\|Ga0127451_1079421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	668	Open in IMG/M
3300010358\|Ga0126370_12354775	Not Available	528	Open in IMG/M
3300010360\|Ga0126372_12178124	Not Available	603	Open in IMG/M
3300010361\|Ga0126378_12390706	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300010366\|Ga0126379_11282811	Not Available	839	Open in IMG/M
3300010366\|Ga0126379_11412955	Not Available	802	Open in IMG/M
3300010379\|Ga0136449_100848439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1499	Open in IMG/M
3300010868\|Ga0124844_1140894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	915	Open in IMG/M
3300012201\|Ga0137365_10015128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6051	Open in IMG/M
3300012209\|Ga0137379_11018134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300012285\|Ga0137370_10778821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300012353\|Ga0137367_10645968	Not Available	739	Open in IMG/M
3300012354\|Ga0137366_10193487	Not Available	1521	Open in IMG/M
3300012354\|Ga0137366_11200118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300012362\|Ga0137361_11445116	Not Available	610	Open in IMG/M
3300012363\|Ga0137390_10391697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1369	Open in IMG/M
3300012384\|Ga0134036_1155426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300012389\|Ga0134040_1086105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300012971\|Ga0126369_10305682	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300014495\|Ga0182015_10508001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300016294\|Ga0182041_11954146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	546	Open in IMG/M
3300016387\|Ga0182040_10189332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1503	Open in IMG/M
3300017926\|Ga0187807_1055152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Labedaea → Labedaea rhizosphaerae	1233	Open in IMG/M
3300017926\|Ga0187807_1160038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300017926\|Ga0187807_1168874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300017932\|Ga0187814_10216903	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300017937\|Ga0187809_10361225	Not Available	546	Open in IMG/M
3300017943\|Ga0187819_10074507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2022	Open in IMG/M
3300017955\|Ga0187817_10937508	All Organisms → cellular organisms → Bacteria → Terrabacteria group	554	Open in IMG/M
3300017959\|Ga0187779_10073248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2026	Open in IMG/M
3300017959\|Ga0187779_10887840	Not Available	613	Open in IMG/M
3300017970\|Ga0187783_10102966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2105	Open in IMG/M
3300017970\|Ga0187783_10679275	Not Available	744	Open in IMG/M
3300017974\|Ga0187777_11203331	Not Available	554	Open in IMG/M
3300017995\|Ga0187816_10560490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300018007\|Ga0187805_10425144	Not Available	618	Open in IMG/M
3300018030\|Ga0187869_10620001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300018033\|Ga0187867_10694451	Not Available	554	Open in IMG/M
3300018058\|Ga0187766_10823698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
3300018058\|Ga0187766_11444373	Not Available	506	Open in IMG/M
3300018060\|Ga0187765_10429848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300018064\|Ga0187773_10432007	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300018482\|Ga0066669_12272500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300019245\|Ga0187791_1490512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300025922\|Ga0207646_10321052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399	Open in IMG/M
3300025929\|Ga0207664_10284151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1452	Open in IMG/M
3300025929\|Ga0207664_11617449	Not Available	570	Open in IMG/M
3300026908\|Ga0207787_1026103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium helvum	575	Open in IMG/M
3300027662\|Ga0208565_1001043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17499	Open in IMG/M
3300027676\|Ga0209333_1000055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61240	Open in IMG/M
3300027905\|Ga0209415_10086596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3552	Open in IMG/M
3300027905\|Ga0209415_10761328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300027905\|Ga0209415_11023788	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300031543\|Ga0318516_10404848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	786	Open in IMG/M
3300031543\|Ga0318516_10710814	Not Available	570	Open in IMG/M
3300031544\|Ga0318534_10113679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1554	Open in IMG/M
3300031544\|Ga0318534_10153149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1330	Open in IMG/M
3300031572\|Ga0318515_10182641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1122	Open in IMG/M
3300031573\|Ga0310915_10707123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	711	Open in IMG/M
3300031640\|Ga0318555_10184269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1123	Open in IMG/M
3300031681\|Ga0318572_10806810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300031682\|Ga0318560_10063128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1853	Open in IMG/M
3300031682\|Ga0318560_10328060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	826	Open in IMG/M
3300031708\|Ga0310686_105335799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300031713\|Ga0318496_10123360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1403	Open in IMG/M
3300031719\|Ga0306917_10251688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1354	Open in IMG/M
3300031723\|Ga0318493_10780845	Not Available	537	Open in IMG/M
3300031736\|Ga0318501_10016541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3004	Open in IMG/M
3300031769\|Ga0318526_10475820	Not Available	510	Open in IMG/M
3300031770\|Ga0318521_10166611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300031770\|Ga0318521_10640601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300031771\|Ga0318546_10695899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	715	Open in IMG/M
3300031777\|Ga0318543_10405215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300031782\|Ga0318552_10452122	Not Available	655	Open in IMG/M
3300031796\|Ga0318576_10103385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1302	Open in IMG/M
3300031799\|Ga0318565_10142673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1160	Open in IMG/M
3300031799\|Ga0318565_10660545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	501	Open in IMG/M
3300031805\|Ga0318497_10474193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	701	Open in IMG/M
3300031819\|Ga0318568_10025821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3235	Open in IMG/M
3300031833\|Ga0310917_10886166	Not Available	601	Open in IMG/M
3300031845\|Ga0318511_10112938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. CF8	1164	Open in IMG/M
3300031859\|Ga0318527_10255187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	745	Open in IMG/M
3300031860\|Ga0318495_10152601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300031879\|Ga0306919_10369570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300031890\|Ga0306925_10018329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6933	Open in IMG/M
3300031890\|Ga0306925_11756987	Not Available	596	Open in IMG/M
3300031894\|Ga0318522_10083478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1169	Open in IMG/M
3300031897\|Ga0318520_10351891	Not Available	894	Open in IMG/M
3300031910\|Ga0306923_10315843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1784	Open in IMG/M
3300031910\|Ga0306923_10671479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. CF8	1156	Open in IMG/M
3300031910\|Ga0306923_11942025	Not Available	599	Open in IMG/M
3300031912\|Ga0306921_12277617	Not Available	569	Open in IMG/M
3300031947\|Ga0310909_10319152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1303	Open in IMG/M
3300031954\|Ga0306926_12011188	All Organisms → cellular organisms → Bacteria → Terrabacteria group	649	Open in IMG/M
3300032008\|Ga0318562_10216530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1110	Open in IMG/M
3300032009\|Ga0318563_10575305	All Organisms → cellular organisms → Bacteria → Terrabacteria group	608	Open in IMG/M
3300032039\|Ga0318559_10607986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	510	Open in IMG/M
3300032060\|Ga0318505_10309738	Not Available	745	Open in IMG/M
3300032066\|Ga0318514_10140034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1250	Open in IMG/M
3300032089\|Ga0318525_10224425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	966	Open in IMG/M
3300032089\|Ga0318525_10360931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	745	Open in IMG/M
3300032091\|Ga0318577_10398946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium helvum	657	Open in IMG/M
3300032094\|Ga0318540_10103848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1338	Open in IMG/M
3300032094\|Ga0318540_10107830	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300032160\|Ga0311301_10078001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6852	Open in IMG/M
3300032205\|Ga0307472_100108766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1929	Open in IMG/M
3300032892\|Ga0335081_10030903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus sabuli	8604	Open in IMG/M
3300032896\|Ga0335075_11514962	Not Available	557	Open in IMG/M
3300032955\|Ga0335076_11679987	Not Available	523	Open in IMG/M
3300034644\|Ga0370548_111766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.91%
Aquatic	Environmental → Aquatic	9.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Freshwater	Environmental → Aquatic → Freshwater	9.09%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.09%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.44%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010120	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012384	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019245	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026908	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072577

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1018665663	3300005332	Tropical Forest Soil	LEAEPIRALIRDRLALPGSPQILLQLGLAHTTRATARRPPADLTES*
Ga0070705_1013458532	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LEAAAIRALIRDRLALPGAPQMLLQLGLAHTAHATARRPPDDLIEL*
Ga0070707_1010546231	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVRAQVRSGLALPGPPQMLLQLGVARTTHPTARRPAEELAEPSAR*
Ga0070699_1021181842	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGPRGLALPGPPQMLLQLGVARTTHPTARRPAEELAEPSAR*
Ga0070731_103726342	3300005538	Surface Soil	IRALIRDRLSLPGAPQMLLQLGVAHATHATARRPPGELIEP*
Ga0070712_1018073832	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ATEIRALIRGRLALPGAPQLLLQLGIAHTTLATARRPPADLIEP*
Ga0079220_101541933	3300006806	Agricultural Soil	IRALIRARLALPGAPQMLLQLGPARTTQATARRPSAELTEP*
Ga0126374_105586562	3300009792	Tropical Forest Soil	EAAEIRALIRGRLALPGAPQLLLQLGIAHSTLATARRPPADLIEP*
Ga0127451_10260372	3300010120	Grasslands Soil	RDRLALPGAPQMLLQLGLAHTAQATARRPASDLIEP*
Ga0127451_10794211	3300010120	Grasslands Soil	RDRLALPGAPQMLLQLGLAHTAQATARRPASDLIALTT*
Ga0126370_123547752	3300010358	Tropical Forest Soil	AAPIRALIRGRLALPGNPQILLQLGPAHTTRATARRPPADLTEP*
Ga0126372_121781241	3300010360	Tropical Forest Soil	AAIRDLIRTRLALPGSPQMLLQLGLARTAQATARRPPAELMEP*
Ga0126378_123907062	3300010361	Tropical Forest Soil	IRDLIRAGMGLPGAPQMLLQLGRARTTQATARRPPTDLMEP*
Ga0126379_112828112	3300010366	Tropical Forest Soil	ERLALPGAPQMLLQLGLAHTAHATARRPPTELIEP*
Ga0126379_114129552	3300010366	Tropical Forest Soil	RDRLALPGPPQMLLQLGLAHTTHATARRSPADLTEP*
Ga0136449_1008484391	3300010379	Peatlands Soil	IRDRLSLPGAPQMVMQLGVSHSARSTARRAPEELIEN*
Ga0124844_11408941	3300010868	Tropical Forest Soil	RLVLPGAPQMLLQLGRAQTTRATARRPPADLTGP*
Ga0137365_100151281	3300012201	Vadose Zone Soil	RRPLIRDRLALPGAPQMLLQLGPAHATHATARRPPDDLIEP*
Ga0137379_110181341	3300012209	Vadose Zone Soil	PLEAAAIRALIRDRLALPGAPQMLLQLGLAHTTHATARRPPADRIEP*
Ga0137370_107788212	3300012285	Vadose Zone Soil	RAVIRDRLALPGAPQMLLQLGLAHTAHTTARRQPDDLIEP*
Ga0137367_106459681	3300012353	Vadose Zone Soil	AAAIRSLIQARLALPGAPQMLLQLGLARATQATARRPPAELIEP*
Ga0137366_101934871	3300012354	Vadose Zone Soil	IRDRLALPGAPQMLLQLGPAHTTHTTARRPPDDLTEP*
Ga0137366_112001181	3300012354	Vadose Zone Soil	IRDRLALPGAPQMLLQLGPAHTTHTTARRPPDDLIEP*
Ga0137371_102913762	3300012356	Vadose Zone Soil	RAGLALPGAPQMLLQLGRADAAPVTARRPASELLSPV*
Ga0137361_114451161	3300012362	Vadose Zone Soil	IRARLALPGFPQMLLQLGRAATAAATARRPAEALLPWQ*
Ga0137390_103916973	3300012363	Vadose Zone Soil	EAAAIRDLIRDRLALPGAPQMLLQLGLADTSHATARRPPDDLIEP*
Ga0134036_11554262	3300012384	Grasslands Soil	RDLIRDRLALPGAPQMLLQLGLAHTAQATARRPASDLIEP*
Ga0134040_10861051	3300012389	Grasslands Soil	LIRDRLALPGAPQMLLQLGLAHTAQATARRPASDLIEP*
Ga0126369_103056821	3300012971	Tropical Forest Soil	LIRDRLALPGRPQILLQLGLAHTTHSTARRPPADLTEP*
Ga0182015_105080012	3300014495	Palsa	MEAVAIRDLIRTRLSLPGSPQMLLQLGPARTTQATARRPPAELVEPR*
Ga0182041_119541462	3300016294	Soil	LIRGRLALPGAPQLLLQLGIAHSTLATARRPPADLMEP
Ga0182040_101893323	3300016387	Soil	ALIKDRLALPGAPQMLMQLGLAHTTRSTARRPPREVTDP
Ga0187807_10551522	3300017926	Freshwater Sediment	TRALIQDRLALPGAPQMLLQLGVAHATHATARRPPEDVTG
Ga0187807_11600381	3300017926	Freshwater Sediment	IRDRLALPGAPQMLLQLGVADTTHPTGRRPPDELIEA
Ga0187807_11688741	3300017926	Freshwater Sediment	HPIIRALIQDRLALPGPPQMLLQLGVAHTTQATPRRPPQDVTV
Ga0187814_102169033	3300017932	Freshwater Sediment	ELLEITVIRALIRDRLALPGAPQMLLQLGVADTTHPTGRRPPDELIEP
Ga0187809_103612251	3300017937	Freshwater Sediment	LIQDRLDLPGYPQILLQLGPAHTTRVTARRPPDDLLAP
Ga0187819_100745074	3300017943	Freshwater Sediment	LEHDLTRALIQDRLALPGAPQMLLQLGVADTTHATARRPPEDVIG
Ga0187817_109375082	3300017955	Freshwater Sediment	ALIEDRLALPGAVQMVLQLGSAGTTHATARRPPADLIEP
Ga0187779_100732481	3300017959	Tropical Peatland	NLIRTLIRDRLALPGIPQMLLQLGLAHTTHATARRSPADLTEP
Ga0187779_108878401	3300017959	Tropical Peatland	LEHELVRAVIQDRLALPGAPQMMLQLGVAHTTNVTARRPPEDVIG
Ga0187783_101029661	3300017970	Tropical Peatland	LIRDRLSLHGAPQMILQLGMAHSTRVTARRPPSDLLDG
Ga0187783_106792752	3300017970	Tropical Peatland	LIRERLALPGAPQMLLQLGLARTTHATARRAPGDLIDP
Ga0187777_112033312	3300017974	Tropical Peatland	RALIRDRLALPGAPQMLLQLGLVDTTHPTGRRPPEELIEP
Ga0187816_105604901	3300017995	Freshwater Sediment	LIRTRLALPGAPQMLLQLGPARTTQATARRSPAELIKP
Ga0187805_104251442	3300018007	Freshwater Sediment	TRLRLPGAPQMLLQLGRARTTLATARRPPAELMEP
Ga0187869_106200011	3300018030	Peatland	TLIRDRLSLPGTPHMVMQLGVSHSAHSTARRAPEELIEP
Ga0187867_106944512	3300018033	Peatland	ASIRALIRDRLSLPGAPQMVMQLGVSHTARSTARRGPDELIEPC
Ga0187766_108236981	3300018058	Tropical Peatland	RDLIRERLALPGAPQMLLQLGLAHTAHATARRPPADLIEP
Ga0187766_114443732	3300018058	Tropical Peatland	IRALIRDRLALPGAPQMLLQLGLVDTTHPTGRRPPEELIEP
Ga0187765_104298482	3300018060	Tropical Peatland	IRALIQDRLGLPGAPQMLLQLGVAHTAHATARRPTQDVIG
Ga0187773_104320072	3300018064	Tropical Peatland	LIQDQLALPGVPQMLLQLGPAHTTRATARRPPSDLIDP
Ga0066669_122725001	3300018482	Grasslands Soil	AAGIRALIRDRLALPGAPQMLLQLGLAHTAHATARRPPDDLIEP
Ga0187791_14905121	3300019245	Peatland	ALPGAPQLLLQLGPAHSAHATARRPAADVIEPTGPEAAG
Ga0207646_103210522	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVRAQVRSGLALPGPPQMLLQLGVARTTHPTARRPAEELAEPSAR
Ga0207664_102841511	3300025929	Agricultural Soil	LIQRCLALPGAPQMLLQLGLAHAAHATARRPPADLIEP
Ga0207664_116174493	3300025929	Agricultural Soil	AAAIRALIQDRLALLGAPQMLLQLGLAHTTQATARRPPADLIDP
Ga0207787_10261031	3300026908	Tropical Forest Soil	RALIRDRLALPGAPQMLLQLGVVDTTHPTGRRPPDELIEP
Ga0208565_10010431	3300027662	Peatlands Soil	SVRELIRSRLALSGAPQLLLQLGVAKTAQATARRPPRELIEPERAR
Ga0209333_100005550	3300027676	Forest Soil	MEAVAIRDLIRTRLSLPGSPQMLLQLGPARTTQATAHRPPAKLGEPR
Ga0209415_100865961	3300027905	Peatlands Soil	IRDRLALPGFPQMLLQLGPAHTTHATARRPPADLTEP
Ga0209415_107613281	3300027905	Peatlands Soil	QPLESGPIRALIRERLSLPGAPQMLLQLGVAHTSHATARRAPGDLIEP
Ga0209415_110237881	3300027905	Peatlands Soil	ALIRALIRDRLSLPGDPQLLLQLGVAHTTHATARRPPGDLIEP
Ga0318516_104048481	3300031543	Soil	LIKDRLGLPGAPQMVLQLGLARTTRSTARRPPAEVTDP
Ga0318516_107108142	3300031543	Soil	AGPIRALIRDRLVLPGSPQILLQLGLAHTTRATARRPPADLTEP
Ga0318534_101136794	3300031544	Soil	DRLALPGAPQMLMQLGLAHTTRSTARRPPREITDP
Ga0318534_101531491	3300031544	Soil	IQDRLALPGHPQILLQLGLAHTARATARRSPADMIEP
Ga0318515_101826411	3300031572	Soil	TLIRALIRDRLALPGAPQMLLQLGVVDTTHPTGRRPPDELIEP
Ga0310915_107071231	3300031573	Soil	DRLALPGAPQMLLQLGAVDTTHPTGRRPPDDLIEP
Ga0318555_101842691	3300031640	Soil	RTLIQDRLALPGHPQILLQLGLAHTARATARRSPADMIEP
Ga0318572_108068101	3300031681	Soil	RALIRDRLGLPSPPQMLLQLGVAHTAHATARRPPDEVIEL
Ga0318560_100631284	3300031682	Soil	DRLALPGAPQMLLQLGVVDTTHPTGRRPPDELIEP
Ga0318560_103280603	3300031682	Soil	TLIRDRLALPGFPQILLQIGLAHTTRATARRAPADLIES
Ga0310686_1053357992	3300031708	Soil	QPLEAAPIRAVIRDRLALPGAPQMLLQLGVAHTTHATARRPPDELIEP
Ga0318496_101233603	3300031713	Soil	LIRDRLGLPSAPQMLLQLGVAHTAHATARRPPDELIEP
Ga0306917_102516881	3300031719	Soil	IQDRLALPGPPQMVLQLGLARTTRSTARRPPTEITEP
Ga0318493_107808453	3300031723	Soil	IKERLALPGAPQMVLQLGLARTTRSTARRPPAEVTDP
Ga0318501_100165411	3300031736	Soil	TLIRALVRDRLALPGAPQMLLQLGAVDTTHPTGRRPPDDLIEP
Ga0318526_104758201	3300031769	Soil	ARLGLPGAPQMLLQLGRARTTQATARRPPAELMEP
Ga0318521_101666113	3300031770	Soil	LIQDRLALPGHPQILLQLGLAHTARATARRSPADMIEP
Ga0318521_106406011	3300031770	Soil	LEAAAIRALIRARLTLPGTPQMLLQLGPARTTQTTARRPPAELIEP
Ga0318546_106958992	3300031771	Soil	DLIRDRLGLPSPPQMLLQLGVAHTAHATARRPPDEVIEL
Ga0318543_104052152	3300031777	Soil	LESEAIRALIRDRLALPGFPQILLQIGLAHTTRATARRAPADLIES
Ga0318552_104521222	3300031782	Soil	IRTLIQDRLALPGHPQILLQLGLAHNTCATARRSPADMIEP
Ga0318576_101033851	3300031796	Soil	KDRLALPGAPQMLMQLGLAHTTRSTARRPPREITDP
Ga0318565_101426731	3300031799	Soil	IRALVRDRLALPGAPQMLLQLGAVDTTHPTGRRPPDDLIEP
Ga0318565_106605451	3300031799	Soil	IKDRLALPGTPQMLLQLGLAHTTHATARRSPADLIEP
Ga0318497_104741932	3300031805	Soil	LEATAIRALIQDRLALPGPPQMMLQLGLAHTTRSTARRPPGELTEP
Ga0318568_100258213	3300031819	Soil	LIRDRLALPGSPQMLLQIGLAHTTRATARRPPAELTES
Ga0310917_108861661	3300031833	Soil	LIRDRQTLPGFPQMLLQLGLAHTTRATARRPPPDLTEP
Ga0318511_101129382	3300031845	Soil	AEVSRELIRERLALPGEPQMLLQLGLAHTAHATARRPPTDLIEP
Ga0318527_102551871	3300031859	Soil	STLIRALVRDRLALPGAPQMLLQLGAVDTTHPTGRRPPDDLIEP
Ga0318495_101526011	3300031860	Soil	LIRDRLALPGAPQMLLQLGVVDTTHPTGRRPPDELIEP
Ga0306919_103695703	3300031879	Soil	RALIKDRLALPGAPQMVLQLGLARTTRSTARRPPAEVTDP
Ga0306925_100183298	3300031890	Soil	LEAAAIRALIKDRLALPGAPQMVLQLGLARTTRSTARRPPAEVTDP
Ga0306925_117569871	3300031890	Soil	AAIRGLIQDRLDLPGHPQILLQLGLAHNTPVTARRSPDTLLEP
Ga0318522_100834781	3300031894	Soil	TLIQDRLALPGHPQILLQLGLAHTARATARRSPADMIEP
Ga0318520_103518911	3300031897	Soil	AAAIRTLIQDRLALPGHPQILLQLGLAHNTCATARRSPADMIEP
Ga0306923_103158431	3300031910	Soil	LIRRQLTLPGWPQMLLQLGLARTTHPTARRPPADLIDP
Ga0306923_106714792	3300031910	Soil	EAVVSRDLIRERLALPGDPQMLLQLGLAHTAHATARRPPTDLIEP
Ga0306923_119420251	3300031910	Soil	DRLALPGHPQILLQLGLAHTARATARRSPADMIEP
Ga0306921_122776172	3300031912	Soil	AAIRALIKDRLALPGAPQMLMQLGLARTTRSTARRPPAEVTDP
Ga0310909_103191523	3300031947	Soil	IRALIKDRLALPGAPQMVLQLGLARTTRSTARRPPAEVTDP
Ga0306926_120111881	3300031954	Soil	GLPGTPQMLMQLGVAHTTRATARRPPEDVIDKPGS
Ga0318562_102165302	3300032008	Soil	IKDRLALPGSPQIVLQLGLARTTQATARRPPTDLAEP
Ga0318563_105753051	3300032009	Soil	IRDRLGLPSAPQMLLQLGVARTAHATARRPPDELIEP
Ga0318559_106079862	3300032039	Soil	IRALIGDRLGLLSAPQMLLQLGVAHTAHATARRPPDELIEP
Ga0318505_103097381	3300032060	Soil	SLEAAAIRTLIQDRLALPGHPQILLQLGLAHNTCATARRSPADMIEP
Ga0318513_100004951	3300032065	Soil	TRGLIQARLALPGCPQMLLQLGLARTTHPTARRPVSELAGPR
Ga0318514_101400344	3300032066	Soil	RSLIKDRLALPGAPQMLMQLGLARTTRSTARRPPREVTDP
Ga0318525_102244251	3300032089	Soil	ALIRDRLTLPGFPQMLLQLGLAHTTRATARRPPPDLTEP
Ga0318525_103609312	3300032089	Soil	IKVRLALPGAPQMLMQLGLARTTRSTARRPPAEVTDP
Ga0318577_103989462	3300032091	Soil	VTLIRALIRDRLALPGAPQMLLQLGVVDTTHPTGRRPPDELIEP
Ga0318540_101038481	3300032094	Soil	LIKDRLALPGAPQMLMQLGLAHTTRSTARRPPREITDP
Ga0318540_101078303	3300032094	Soil	VRDRLALPGAPQMLLQLGAVDTTHPTGRRPPDDLIEP
Ga0311301_100780011	3300032160	Peatlands Soil	ACAAASLPGFPQMLLQLGPAHTTHATARRPPADLTEP
Ga0307472_1001087664	3300032205	Hardwood Forest Soil	ADAIRVLIQRCLALPGAPQMLLQLGLAHAAHATARRPPADLIEP
Ga0335081_1003090310	3300032892	Soil	VRAAIREELTLPGWPQMLLQLGLARSTHSTARRPPAELIDPW
Ga0335075_115149622	3300032896	Soil	KERLALPGEPQMLLQLGVARTTRTTARRPPEELIEPWPRYRDT
Ga0335076_116799871	3300032955	Soil	RALIRERLALPGTPQVLLQLGPAHTTHATARRPPADLIDP
Ga0370548_111766_2_133	3300034644	Soil	AAIRALIRDRLALPGAPQMLLQLGLAHTTHVTARRSPADLIEP

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign