Metagenome / Metatranscriptome Family F072608

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F072608
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	73 residues
Representative Sequence	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Number of Associated Samples	88
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.65 %
% of genes near scaffold ends (potentially truncated)	29.75 %
% of genes from short scaffolds (< 2000 bps)	90.08 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (66.116 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.488 % of family members)
Environment Ontology (ENVO)	Unclassified (46.281 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.074 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.54% β-sheet: 0.00% Coil/Unstructured: 54.46%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00106	adh_short	1.65
PF17195	DUF5132	1.65
PF02586	SRAP	1.65
PF03330	DPBB_1	0.83
PF13436	Gly-zipper_OmpA	0.83
PF04226	Transgly_assoc	0.83
PF04909	Amidohydro_2	0.83
PF13229	Beta_helix	0.83
PF00872	Transposase_mut	0.83
PF02195	ParBc	0.83
PF09371	Tex_N	0.83
PF13419	HAD_2	0.83
PF13472	Lipase_GDSL_2	0.83
PF13407	Peripla_BP_4	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.65
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
All Organisms	root	All Organisms	33.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
cellular organisms	root	All Organisms → cellular organisms	33.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.93 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.31 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.31 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.48 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	2.48 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320005\|FACEOR_FY84VJD01D2KVF	Not Available	508	Open in IMG/M
3300000955\|JGI1027J12803_108435954	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300002245\|JGIcombinedJ26739_101778049	Not Available	517	Open in IMG/M
3300003505\|JGIcombinedJ51221_10299860	Not Available	654	Open in IMG/M
3300004092\|Ga0062389_100917915	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300004152\|Ga0062386_101716965	Not Available	524	Open in IMG/M
3300004633\|Ga0066395_10089482	Not Available	1461	Open in IMG/M
3300004633\|Ga0066395_10151911	Not Available	1173	Open in IMG/M
3300005172\|Ga0066683_10636529	Not Available	641	Open in IMG/M
3300005180\|Ga0066685_10420098	Not Available	929	Open in IMG/M
3300005434\|Ga0070709_10049878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2619	Open in IMG/M
3300005435\|Ga0070714_100452746	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300005436\|Ga0070713_100408854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1268	Open in IMG/M
3300005436\|Ga0070713_102079537	Not Available	551	Open in IMG/M
3300005437\|Ga0070710_11343485	Not Available	533	Open in IMG/M
3300005439\|Ga0070711_100309634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1258	Open in IMG/M
3300005552\|Ga0066701_10221174	Not Available	1166	Open in IMG/M
3300005561\|Ga0066699_10127784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1711	Open in IMG/M
3300005602\|Ga0070762_10158164	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300005764\|Ga0066903_100153814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3313	Open in IMG/M
3300005764\|Ga0066903_102186962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1066	Open in IMG/M
3300005764\|Ga0066903_104843223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300005921\|Ga0070766_10323325	Not Available	995	Open in IMG/M
3300006028\|Ga0070717_10242225	Not Available	1591	Open in IMG/M
3300006175\|Ga0070712_100282423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1337	Open in IMG/M
3300006175\|Ga0070712_100295798	Not Available	1308	Open in IMG/M
3300006175\|Ga0070712_101763566	Not Available	542	Open in IMG/M
3300006176\|Ga0070765_100233714	Not Available	1680	Open in IMG/M
3300006176\|Ga0070765_100372249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1330	Open in IMG/M
3300006755\|Ga0079222_10071606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1708	Open in IMG/M
3300006755\|Ga0079222_10229955	Not Available	1146	Open in IMG/M
3300006796\|Ga0066665_11620906	Not Available	510	Open in IMG/M
3300006800\|Ga0066660_11146612	Not Available	613	Open in IMG/M
3300006800\|Ga0066660_11411509	Not Available	546	Open in IMG/M
3300006804\|Ga0079221_11666843	Not Available	518	Open in IMG/M
3300009792\|Ga0126374_11418075	Not Available	566	Open in IMG/M
3300010046\|Ga0126384_11170526	Not Available	708	Open in IMG/M
3300010048\|Ga0126373_10037978	Not Available	4210	Open in IMG/M
3300010048\|Ga0126373_10062675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3338	Open in IMG/M
3300010322\|Ga0134084_10246897	Not Available	643	Open in IMG/M
3300010359\|Ga0126376_10561674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300010359\|Ga0126376_11939377	Not Available	629	Open in IMG/M
3300010360\|Ga0126372_12394218	Not Available	578	Open in IMG/M
3300010361\|Ga0126378_10321340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1654	Open in IMG/M
3300010361\|Ga0126378_10973623	Not Available	953	Open in IMG/M
3300010361\|Ga0126378_11480761	Not Available	769	Open in IMG/M
3300010361\|Ga0126378_12717617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300010361\|Ga0126378_12808742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300010376\|Ga0126381_100297230	Not Available	2209	Open in IMG/M
3300010376\|Ga0126381_103962163	Not Available	577	Open in IMG/M
3300010398\|Ga0126383_10452947	Not Available	1333	Open in IMG/M
3300010398\|Ga0126383_12990734	Not Available	552	Open in IMG/M
3300011120\|Ga0150983_13124536	Not Available	539	Open in IMG/M
3300012205\|Ga0137362_10387677	Not Available	1210	Open in IMG/M
3300012285\|Ga0137370_10235328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1082	Open in IMG/M
3300012356\|Ga0137371_10918886	Not Available	665	Open in IMG/M
3300012361\|Ga0137360_10127312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1989	Open in IMG/M
3300012361\|Ga0137360_11062732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300012685\|Ga0137397_10904118	Not Available	654	Open in IMG/M
3300012924\|Ga0137413_11423567	Not Available	561	Open in IMG/M
3300012971\|Ga0126369_11040376	Not Available	907	Open in IMG/M
3300012971\|Ga0126369_12642798	Not Available	586	Open in IMG/M
3300012977\|Ga0134087_10574664	Not Available	579	Open in IMG/M
3300015264\|Ga0137403_11153832	Not Available	621	Open in IMG/M
3300016357\|Ga0182032_10351702	Not Available	1179	Open in IMG/M
3300016371\|Ga0182034_10195406	Not Available	1560	Open in IMG/M
3300016422\|Ga0182039_10404769	Not Available	1159	Open in IMG/M
3300018433\|Ga0066667_11394205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300020579\|Ga0210407_10597248	Not Available	860	Open in IMG/M
3300020580\|Ga0210403_10601828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	887	Open in IMG/M
3300020580\|Ga0210403_11260645	Not Available	566	Open in IMG/M
3300020581\|Ga0210399_10842789	Not Available	747	Open in IMG/M
3300020582\|Ga0210395_10170689	Not Available	1628	Open in IMG/M
3300020583\|Ga0210401_10277949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1534	Open in IMG/M
3300020583\|Ga0210401_10447684	Not Available	1154	Open in IMG/M
3300021168\|Ga0210406_10517487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300021171\|Ga0210405_11415289	Not Available	506	Open in IMG/M
3300021178\|Ga0210408_11159151	Not Available	592	Open in IMG/M
3300021181\|Ga0210388_10609271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	955	Open in IMG/M
3300021403\|Ga0210397_10465375	Not Available	953	Open in IMG/M
3300021420\|Ga0210394_10675921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	906	Open in IMG/M
3300021478\|Ga0210402_11415450	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300021560\|Ga0126371_10043568	Not Available	4266	Open in IMG/M
3300021560\|Ga0126371_10151836	Not Available	2378	Open in IMG/M
3300021560\|Ga0126371_11902645	Not Available	714	Open in IMG/M
3300021560\|Ga0126371_11993632	Not Available	698	Open in IMG/M
3300021560\|Ga0126371_13313256	Not Available	544	Open in IMG/M
3300022724\|Ga0242665_10086587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906	Open in IMG/M
3300025915\|Ga0207693_10563996	Not Available	887	Open in IMG/M
3300025916\|Ga0207663_10315608	Not Available	1173	Open in IMG/M
3300025928\|Ga0207700_11017739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	741	Open in IMG/M
3300025929\|Ga0207664_10845634	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300026551\|Ga0209648_10209144	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1481	Open in IMG/M
3300026984\|Ga0208732_1004770	Not Available	1043	Open in IMG/M
3300027297\|Ga0208241_1009230	All Organisms → cellular organisms → Bacteria → Proteobacteria	1363	Open in IMG/M
3300027371\|Ga0209418_1054272	Not Available	713	Open in IMG/M
3300027635\|Ga0209625_1038207	Not Available	1071	Open in IMG/M
3300027795\|Ga0209139_10311756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300027855\|Ga0209693_10122429	Not Available	1287	Open in IMG/M
3300027884\|Ga0209275_10025306	Not Available	2693	Open in IMG/M
3300027889\|Ga0209380_10603765	Not Available	635	Open in IMG/M
3300028047\|Ga0209526_10463403	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300028906\|Ga0308309_10240460	Not Available	1510	Open in IMG/M
3300031057\|Ga0170834_103071927	Not Available	546	Open in IMG/M
3300031057\|Ga0170834_111294494	Not Available	692	Open in IMG/M
3300031128\|Ga0170823_10238129	Not Available	528	Open in IMG/M
3300031128\|Ga0170823_12054790	Not Available	521	Open in IMG/M
3300031231\|Ga0170824_107354241	Not Available	686	Open in IMG/M
3300031231\|Ga0170824_109699560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	919	Open in IMG/M
3300031231\|Ga0170824_114982532	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031231\|Ga0170824_123058569	Not Available	537	Open in IMG/M
3300031754\|Ga0307475_10233981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	1471	Open in IMG/M
3300031754\|Ga0307475_10887548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300031954\|Ga0306926_10834671	Not Available	1108	Open in IMG/M
3300031954\|Ga0306926_12963475	Not Available	508	Open in IMG/M
3300032059\|Ga0318533_10110459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1913	Open in IMG/M
3300032205\|Ga0307472_102627114	Not Available	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.52%
Aquatic	Environmental → Aquatic	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.69%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.77%
Loam	Environmental → Terrestrial → Soil → Loam	28.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.48%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.13%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_4315200	2032320005	Soil	MHFGSDGHWNRKSAAYHHAEAARARRLLAEATTHWSKGHLADVIAWHEQIAAEIERASEPDADEASPQHAAAAASSETPG
JGI1027J12803_1084359544	3300000955	Soil	MEPTSAGYHRAAAARARRLRAEATTQWLKTHLDEAIARHEKIAEEIERASEPDGDAGSRRERTFALSIETLDRGEPADAA
JGIcombinedJ26739_1017780491	3300002245	Forest Soil	WSMEQRSATYHRAVAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
JGIcombinedJ51221_102998601	3300003505	Forest Soil	ARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0062389_1009179153	3300004092	Bog Forest Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHKQIAAEIERASEPDGDAVSSQDETSALSSE
Ga0062386_1017169651	3300004152	Bog Forest Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENEIAQHEQIAEEIERVSEPGADAASAQGETTALSSETPGR*
Ga0066395_100894823	3300004633	Tropical Forest Soil	MAVADFGNAVGVAVLERRSAAYHRAAAARARRLRAEATTAWSKEYLTDAVVRHEQIATEIERTSEPDAPATPQENETAAPSSETPGQ*
Ga0066395_101519113	3300004633	Tropical Forest Soil	MQSAEYHRAAAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSEPDADASPVSETAALSSETAGR*
Ga0066683_106365292	3300005172	Soil	VERRSAAYHRAAAARARRLRAEATTPWLKKHLESEIAQREQIAAEVERASEFDGDAASAQAETAAFSSETPGDKPQGFA*
Ga0066685_104200982	3300005180	Soil	LEQRSAAYHRAAAARARRLRAEATTRWSKEHLEEEIARHEQIADEIERASEPDADATSAQDETAALASETPGR*
Ga0070709_100498784	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRLEWWSLEHRSSAYHRAAAERARRLRAEATTRWLKEQLEDAIAQHEKIAAAIERASEPGADGASAQTETAALSSETPGQ*
Ga0070714_1004527462	3300005435	Agricultural Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENDIAQHEQIAAEIERASEPDGDAASAEDQTPALSSETPGR*
Ga0070713_1004088541	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VFLGNDTSEWWSLEQRSAVYHRAAAAKARRFRAEATTPRLKEQLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSAHSSETPAE*
Ga0070713_1020795371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AVYHRAAAAKARRLREEATTRRLKEQLENAIVQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0070710_113434851	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ARARRLRAEATTPWLKEHLENEIAQHEQIVAEIERASEPGADAASAQGETATETPGR*
Ga0070711_1003096342	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSS*
Ga0066701_102211743	3300005552	Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENLIAQHEQIAAEIERASEPDRDAATAEDQTAALSSETPGR*
Ga0066699_101277841	3300005561	Soil	MEQRSAAYHRAAAARARKLREEATTPWLKEHLENTITQHEQIAAEIERASEPDRDAAASAEGETAALSDETPGR*
Ga0070762_101581642	3300005602	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETAALSSETPGR*
Ga0066903_1001538144	3300005764	Tropical Forest Soil	MEQRSAAAYHRAAAARARRLLSEATTCWLKEHLAAAIARHDQLVEEIERVSDPNAEEGETPALSSETPGR*
Ga0066903_1021869623	3300005764	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSEPDADASPVSETAALSSETPGR*
Ga0066903_1048432233	3300005764	Tropical Forest Soil	MAVADFGNAVEVEVLERRSAAYHRAAAARARRLRAEATTPWSKEYLAEAVARHEQIAAEIERTSEPDAVTTSQENETAALSSETPGQ*
Ga0070766_103233251	3300005921	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0070717_102422253	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MEQRSAAYHRVAAARARRLREEATTRRLKEQLEAAIAQHEQIAESIERAVEPGADAASAQGETAALSSETPGQ*
Ga0070712_1002824232	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAEHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0070712_1002957981	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VFLGNDTSEWWSLEQRSAVYHRAAAAKARRFRAEATTPRLKEQLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSALSSETPGR*
Ga0070712_1017635661	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LEHRSAAFHRAAAARARRLRAEATTRWLKEQLEDTIAQHEKIAAAIEMASEPGADAGSEGKTAPLAS*
Ga0070765_1002337143	3300006176	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETPGR*
Ga0070765_1003722492	3300006176	Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0079222_100716063	3300006755	Agricultural Soil	MEQRSAAYHRAAAARARSLRAEATTPWSKGHLGNAIDEHEQIAEEIERASEPDGDAVSSQDETPAPSSETPGR*
Ga0079222_102299551	3300006755	Agricultural Soil	LEQKSAAYHHAEAARARRLLAEATTHWSKGHLADVIAWHEQIAAEIERASEPDADEASPQHAAAAASSETPG*
Ga0066665_116209062	3300006796	Soil	VERRSAAYHRAAAARARRLRAEATTPWLKKHLESEIAQREQIAAEVERASEFDGDAASAQAETAAFSSETPGDKP
Ga0066660_111466122	3300006800	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLKNAIAQHEQIAAEIERASEPDEDAVSSQDETSALSSETPGR*
Ga0066660_114115091	3300006800	Soil	LERRSAAYHRAAAVRARRLRAEATTLWLKKHLENEIAEHEQIAAEIERASEPGADAASGRAETAALSTEPPSR*
Ga0079221_116668431	3300006804	Agricultural Soil	MEQRSAAYHRAAAARARRLRAEATTPWSKGHLGNAIDEHEQIAEEIERASEPDGDAVSSQDETPAPSSETPGR*
Ga0126374_114180751	3300009792	Tropical Forest Soil	MQSAEYHRAAAARARKLRADATTRWLKHHLEDEIALHEQIAEEIERASGLDADAGLPEGETPALASETPGR*
Ga0126384_111705261	3300010046	Tropical Forest Soil	QRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTVLPEGETPALSSETPGR*
Ga0126373_100379783	3300010048	Tropical Forest Soil	LGTQSAEYHRAAAARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR*
Ga0126373_100626755	3300010048	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTGLPEGETPALSSETPGR*
Ga0134084_102468971	3300010322	Grasslands Soil	LEQRSAAYHRAAAARARRLRAEATTRWSKEHLEEEIARHEQIADEIERASEPDADAASAQDETAALASETPGR*
Ga0126370_113472101	3300010358	Tropical Forest Soil	LEHPSAAYHRAAAARARRLRAEATTHRLKQHLEDEIAWHEQKADEIERAYEAGTDAEYPRADTSV*
Ga0126376_105616741	3300010359	Tropical Forest Soil	PSMAVADFGNVVEVEVLERRSAAYHRAAAARARRLRAEATTAWSKEYLGEAVARHEQIAAEVERTSEPDAAITSQENETAALSSETPGQ*
Ga0126376_119393772	3300010359	Tropical Forest Soil	MQSAEYHRAAAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSDLAADAGLPQGETPALSSETPGR*
Ga0126372_123942181	3300010360	Tropical Forest Soil	ATYHRAEAARARKLLAEATTPRLKEHLEAEVARHEQIAAEVERASEPDAVSSHDASADLSSEASDDG*
Ga0126372_125370831	3300010360	Tropical Forest Soil	ARRLRAEATTAWSKEYLTEAVAQHEQIAAEIERTSEPDAPAMSEENETAASSSETPEQ*
Ga0126378_103213402	3300010361	Tropical Forest Soil	MAVADFGNAVEVEVLERRSAAYHRAAAARARRLRAEATTPWSKEYLAEAVARHEQIAAEIERTSEPDAATTLQENETVALSSETPGQ*
Ga0126378_109736231	3300010361	Tropical Forest Soil	AAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSDPDADAGLAEGETPALSSETPGR*
Ga0126378_114807612	3300010361	Tropical Forest Soil	AAYHRAEAARARRLRAEATTRWLKEHLDDAIARHEQIAAEVERASEPDRASPLDKFAELSSETPGG*
Ga0126378_127176171	3300010361	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTVLPDGETPALSSETPGR*
Ga0126378_128087421	3300010361	Tropical Forest Soil	AAARARRLRAEATTAWSKEYLAEAVARHEQIAAEVERASEPDADTVALSSETPG*
Ga0126379_104357411	3300010366	Tropical Forest Soil	MQSAEYHRAAAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSDLAADAGLPQGETP
Ga0126381_1002972301	3300010376	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTVLPEGETPALSSETPGR*
Ga0126381_1039621632	3300010376	Tropical Forest Soil	LERRSAAYHRAKAAQARRLLADATTRWLKEHLRDDIARHEQIAAEVERASEPDMDAASPQHATAAVSSETPG*
Ga0126383_104529472	3300010398	Tropical Forest Soil	MQSAEYHRAAAARARKLRADATTRWLKQHLEDEIALHEQIAEEIERASEPDADAGLPEGETPALASETPGR*
Ga0126383_129907341	3300010398	Tropical Forest Soil	RRVFPIVRMRPEWWLLERRSSAYHRAAAARARRLRAEATTRWLKEHLADAIAQHEQIAAEIERVSEPDVDAASPEEEPAVLSSETPGR*
Ga0150983_131245362	3300011120	Forest Soil	MEQRSADYHRAAAARARRLRAEATTLWLKEHLEDAIAQHEQIATEIERASEPDGDAASSQDEISALSSETPGR*
Ga0137362_103876771	3300012205	Vadose Zone Soil	MEQRSAAYHRAAAARARRLRAEAPTRWLKEHLEDAIARHDQIAEEIERASEPDADAASPQDETTALSSETPGR*
Ga0137370_102353282	3300012285	Vadose Zone Soil	MEQRSVAYHRTAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPNGDAVSSQDETSALSSETPGR*
Ga0137371_109188861	3300012356	Vadose Zone Soil	GRRPQSGANLNGTFGVVVMEQSSSAAYHRAAAARARRLRAEATTRWSKEHLEEEIARHEQIADEIERASEPDADAASAQDETAALASETPGR*
Ga0137360_101273121	3300012361	Vadose Zone Soil	LELKSAAYHREALARARRLRAEATTPWLKEHLENLIAQHEQIAAEIERASEPDRDAATAEDQTAALSSETPGR*
Ga0137360_110627322	3300012361	Vadose Zone Soil	LEQKSAAYHRAAAARARRLRAEATTRWLKEHLEGEIAQREQIAAEVERAFEPDRDAASGQTETAALSSETPGR*
Ga0137397_109041181	3300012685	Vadose Zone Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENLIAQHEQIAEEIERAAEPGADAASAEDQTAALSSETPGR*
Ga0137413_114235671	3300012924	Vadose Zone Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENDIAQHEQIAEEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0126369_110403761	3300012971	Tropical Forest Soil	AARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR*
Ga0126369_126427982	3300012971	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIDRVSDPDAEEGETLALASETPGR*
Ga0134087_105746642	3300012977	Grasslands Soil	AAARARRLRAEATTPWVKDRLEVEIVQHEQIAAEIEKASEPRTDGASPEGESAAVSSETPGR*
Ga0137403_111538321	3300015264	Vadose Zone Soil	MEHNSAAYHRAAAARARRLRAEATTRWLKEQLEATIAQHEQIAAEIERACEPDTERASSEDEVTALSSETPRC*
Ga0182032_103517022	3300016357	Soil	MFGVAILERKSATYHRAAAARARRLRAEATTRWLKEHLEDTITRHEQIVAQVERVSERDAVSPHDASAELSSETPE
Ga0182034_101954062	3300016371	Soil	MFGVAILERKSATYHRAAAARARRLRAAATTRWSKEHLEDTIARPEQIAAQVERVSEPDAVSPHDASAELSSETPE
Ga0182039_104047693	3300016422	Soil	VAILERKSATYHRAAAARARRLRAEATTRWLKEHLEDTITRHEQIVAQVERVSERDAVSPHDASAE
Ga0066667_113942052	3300018433	Grasslands Soil	MEQRSAAYHRAAAAQARRLRAEATTRWLKEHLENAIAKHEQIAAEIERASEPGGDAVPPQDETSALSSETPG
Ga0210407_105972482	3300020579	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAEHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210403_106018281	3300020580	Soil	MEQRSADYHRAAAARARRFRAEATTPWLKEHLENAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETPGR
Ga0210403_112606451	3300020580	Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210399_108427891	3300020581	Soil	LEHRSAAFHRAAAARARRLRAEATTRWLKEQLEDTIAQHEKIAAAIEMASEPGADEGSEGETAPLQAKPPADNPQGFA
Ga0210395_101706892	3300020582	Soil	MEQRSATYHRAAAARARRLRAEATTLWLKEHLEHAIAQHEQIATEIERASEPDGDAASSQDETSALSSETPGR
Ga0210401_102779491	3300020583	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210401_104476841	3300020583	Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENDIAQHEQIAAEIERASEPDGDAASAEDQTPALSSETPGR
Ga0210406_105174871	3300021168	Soil	MEQRSAAYHRAAAARARRLWAEATTPWLKEHLENATAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210405_114152891	3300021171	Soil	MEQRSAAYHRAGAARARRLGAEATTPWLKEHLENAIAQHEEIAAEIERASEPDGDAVSSQDETSALSSETPRRQSEGSTRSPFGTTERSGL
Ga0210408_111591511	3300021178	Soil	MEQTSSAAYHRAAAARARRLRAEATTRWLKEHLEGAIARHEQIAEQIERGFEPDADAALPETEETAGR
Ga0210388_106092711	3300021181	Soil	MEQRSADYHRAAAARARRLRAEATTLWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210397_104653752	3300021403	Soil	RSATYHRAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210394_106759211	3300021420	Soil	RSAAFHRAAAARARRLRAEATTRWLKEQLEDTIAQHEKIAAAIEMASEPGADEGSEGETAPLQAKPPADNPQGFA
Ga0210402_114154501	3300021478	Soil	HRAAAARARRLRAEATTPWLKEHLENVIAQHEQIAAEIERASEPDGDAVSSQDETSALSPGR
Ga0126371_100435687	3300021560	Tropical Forest Soil	LGTQSAEYHRAAAARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR
Ga0126371_101518363	3300021560	Tropical Forest Soil	LEWWSLSTQSAEYHRAAAARARKLRADATTRWLKEHLEDEIARHERIAEEIERASEPDADAGLPEGETPALASETPGR
Ga0126371_119026451	3300021560	Tropical Forest Soil	AAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIDRVSDPDAEEGETLALASETPGR
Ga0126371_119936322	3300021560	Tropical Forest Soil	MAVADFGNAVEVEVLERRSAAYHRAAAARARRLRAEATTPWSKEYLAEAVARHEQIAAEIERTSEPDAATTLEENETAALSSETPGQ
Ga0126371_133132561	3300021560	Tropical Forest Soil	SAAYHRAAAARARRLRAEATTAWSKEYLTEAVAQHEQIAAEIERTSEPDAPAMSEENETAASSSETPEQ
Ga0213880_100453802	3300021953	Exposed Rock	VEKSSATYHRAVAARARRLREEATTRRLKEQLAETIAQHEQIAEEIERAFEFAADVASPQGDIAAD
Ga0242665_100865873	3300022724	Soil	MEQRSEDYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0207693_105639961	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	FLGNDTSEWWSLEQRSAVYHREAAAKARRLREEATTRRLKEQLENAIVQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0207663_103156082	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEERSAVYHRAAAARARRLREEATTRRLKEQLEDAIAQHEKIAAAIERAAEPGADAASAQ
Ga0207700_110177392	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VFLGNDTSEWWSLEQRSAVYHRAAAAKARRFRAEATTPRLKEQLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSAHSSETPAE
Ga0207664_108456341	3300025929	Agricultural Soil	REAAARARRLRAEATTPWLKEHLENDIAQHEQIAAEIERASEPDGDAVSAEDQTPALSSETPGR
Ga0209648_102091442	3300026551	Grasslands Soil	MEQRSAAYHRAAAARGRRLRAEATTPWLKEHLENLIAQHEQIAAEIERAAEPGADAASAQGEAALSSETPGR
Ga0208732_10047702	3300026984	Forest Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGEAVSSQDETSALSSETPGR
Ga0208241_10092301	3300027297	Forest Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSALSSETPGR
Ga0209418_10542722	3300027371	Forest Soil	SLEEKAAAYHRAAAARARRLRAEATTRWLKEHLEDAIARHEQIAEEIERASEADADAGSTQDEAAPLSSETPGR
Ga0209625_10382071	3300027635	Forest Soil	MEQRSATYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0209139_103117561	3300027795	Bog Forest Soil	VAKARRLREEATTRRLKEQLEDVIARHEQIAEEIERAFEPDGDAVSSQDETSALSSETPG
Ga0209693_101224291	3300027855	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETCDGPVVWTGSGEE
Ga0209275_100253062	3300027884	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETAALSSETPGR
Ga0209380_106037653	3300027889	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETS
Ga0209526_104634031	3300028047	Forest Soil	MERRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0308309_102404603	3300028906	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETPGR
Ga0170834_1030719271	3300031057	Forest Soil	LELKSATYHREAAARARRLRTEATTPRLKEQLEDAITQHEQIAEEIERAAEPGADAASVEDQTAALSSETPGR
Ga0170834_1112944942	3300031057	Forest Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENEIAQHEQIAAEIEGASEPGADAASAQDETASETPGR
Ga0170823_102381291	3300031128	Forest Soil	MEQRSAAYHRAAAARARGLRAEATTPRLKEHLENAITQHEQIAAEIERASEPDGDAVSSQGETSALSSETPGR
Ga0170823_120547901	3300031128	Forest Soil	LELKSAAYHREAAARARRLRTEATTPRLKEQLEDAITQHEQIAEEIERAAEPGADAASAQGETPALSSETPGR
Ga0170824_1073542411	3300031231	Forest Soil	LELKSATYHREAAARARRLRTEATTPRLKEQLEDAITQHEQIAEEIERAAEPGADAASAQGETPALSSETPGR
Ga0170824_1096995601	3300031231	Forest Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENEIAQHEQIAAEIEGASEPGADAASAQDETASETPGR
Ga0170824_1149825321	3300031231	Forest Soil	MERRSAGYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQGETSALSSETPGR
Ga0170824_1230585693	3300031231	Forest Soil	VFLVNDTSEWWSLELRSAVYHRTAAAKARRLREDATTRRLKEQLEDVIARHEQIAEEIERASEPNGDAVSSQDE
Ga0307475_102339812	3300031754	Hardwood Forest Soil	ARARRLRAEATTPWLKGHLENAIDEHEQIAEEIERASELDGDAVSSQDETSTLSSETPGR
Ga0307475_108875481	3300031754	Hardwood Forest Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETCDGPGSLDSFRGGIS
Ga0306926_108346711	3300031954	Soil	MFGVAILERKSATYHRAAAARARRLRAAATTRWSKEHLEDTIARPEQIAAQVERVSEPDAVSPHDAS
Ga0306926_129634752	3300031954	Soil	LERRSADYYRAEAARARRLLAEATTPWLKEHLANSIARHEQIATEIERASEPDTASPHDQSAEVSRVTSVASHRVT
Ga0318533_101104591	3300032059	Soil	AILERKSATYHRAAAARARRLRAEATTRWLKEHLEDTITRHEQIVAQVERVSERDAVSPHDASAELSSETPE
Ga0307472_1026271142	3300032205	Hardwood Forest Soil	DYHRAAAARARRLRAEATTPWLKEHLENAIAEHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072608

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences