Metagenome / Metatranscriptome Family F072650

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072650
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	98 residues
Representative Sequence	VQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRVPTRLN
Number of Associated Samples	100
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	7.44 %
% of genes near scaffold ends (potentially truncated)	89.26 %
% of genes from short scaffolds (< 2000 bps)	93.39 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.983 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (15.703 % of family members)
Environment Ontology (ENVO)	Unclassified (31.405 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.025 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.15% β-sheet: 28.87% Coil/Unstructured: 65.98%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF07730	HisKA_3	11.57
PF13091	PLDc_2	2.48
PF00487	FA_desaturase	2.48
PF11066	DUF2867	1.65
PF13415	Kelch_3	1.65
PF03446	NAD_binding_2	1.65
PF00072	Response_reg	0.83
PF05532	CsbD	0.83
PF00196	GerE	0.83
PF03795	YCII	0.83
PF05239	PRC	0.83
PF03417	AAT	0.83
PF08450	SGL	0.83
PF03176	MMPL	0.83
PF00128	Alpha-amylase	0.83
PF11941	DUF3459	0.83
PF01904	DUF72	0.83
PF13358	DDE_3	0.83
PF04014	MazE_antitoxin	0.83
PF14310	Fn3-like	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	11.57
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	11.57
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	11.57
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	11.57
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	2.48
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	2.48
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.83
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.83
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.83
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.83
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.83
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.83
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.83
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.83
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.83
COG4927	Predicted choloylglycine hydrolase	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
All Organisms	root	All Organisms	38.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
cellular organisms	root	All Organisms → cellular organisms	38.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.79 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	4.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.65 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.83 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.79 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	4.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.65 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.79 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	4.13 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.83 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.83 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.79 %
Mycolicibacterium moriokaense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	4.13 %
Pseudonocardia ammonioxydans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia ammonioxydans	0.83 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.83 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.79 %
Mycolicibacterium moriokaense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	4.13 %
Amycolatopsis sp. SID8362	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. SID8362	0.83 %
Pseudonocardia ammonioxydans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia ammonioxydans	0.83 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573002\|GZIGXIF01DWW7C	Not Available	508	Open in IMG/M
2189573002\|GZIGXIF02HCILI	Not Available	507	Open in IMG/M
3300004156\|Ga0062589_101758568	Not Available	620	Open in IMG/M
3300004803\|Ga0058862_12450940	Not Available	505	Open in IMG/M
3300005338\|Ga0068868_100146064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	1945	Open in IMG/M
3300005341\|Ga0070691_10015129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3544	Open in IMG/M
3300005355\|Ga0070671_100623268	Not Available	933	Open in IMG/M
3300005435\|Ga0070714_101441507	Not Available	672	Open in IMG/M
3300005436\|Ga0070713_101235440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	723	Open in IMG/M
3300005439\|Ga0070711_100894582	Not Available	757	Open in IMG/M
3300005439\|Ga0070711_101772760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300005440\|Ga0070705_101648107	Not Available	541	Open in IMG/M
3300005445\|Ga0070708_102078387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300005456\|Ga0070678_101256785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300005467\|Ga0070706_100283954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1545	Open in IMG/M
3300005526\|Ga0073909_10103827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	1128	Open in IMG/M
3300005536\|Ga0070697_100694486	Not Available	898	Open in IMG/M
3300005545\|Ga0070695_101577283	Not Available	548	Open in IMG/M
3300005549\|Ga0070704_101547180	Not Available	611	Open in IMG/M
3300005563\|Ga0068855_101274466	Not Available	762	Open in IMG/M
3300005602\|Ga0070762_11007603	Not Available	571	Open in IMG/M
3300005842\|Ga0068858_102166247	Not Available	550	Open in IMG/M
3300005843\|Ga0068860_100993166	Not Available	857	Open in IMG/M
3300006028\|Ga0070717_10075760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2814	Open in IMG/M
3300006028\|Ga0070717_10402775	Not Available	1229	Open in IMG/M
3300006028\|Ga0070717_11226155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300006057\|Ga0075026_100361874	Not Available	807	Open in IMG/M
3300006173\|Ga0070716_101472404	Not Available	556	Open in IMG/M
3300006175\|Ga0070712_100957809	Not Available	739	Open in IMG/M
3300006175\|Ga0070712_101454485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300006755\|Ga0079222_10270957	Not Available	1084	Open in IMG/M
3300006804\|Ga0079221_10309761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	931	Open in IMG/M
3300006804\|Ga0079221_11141054	Not Available	600	Open in IMG/M
3300006806\|Ga0079220_10272384	Not Available	1028	Open in IMG/M
3300006852\|Ga0075433_11520939	Not Available	578	Open in IMG/M
3300006854\|Ga0075425_100262722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1986	Open in IMG/M
3300006854\|Ga0075425_101143800	Not Available	885	Open in IMG/M
3300006854\|Ga0075425_102838071	Not Available	532	Open in IMG/M
3300006871\|Ga0075434_100361568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1472	Open in IMG/M
3300006871\|Ga0075434_102235053	Not Available	550	Open in IMG/M
3300006904\|Ga0075424_101698878	Not Available	668	Open in IMG/M
3300006904\|Ga0075424_102123055	Not Available	592	Open in IMG/M
3300006914\|Ga0075436_100501610	Not Available	888	Open in IMG/M
3300006914\|Ga0075436_100519065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	873	Open in IMG/M
3300006914\|Ga0075436_100656745	Not Available	775	Open in IMG/M
3300006914\|Ga0075436_100769726	Not Available	716	Open in IMG/M
3300006954\|Ga0079219_11957086	Not Available	556	Open in IMG/M
3300007076\|Ga0075435_100295887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1384	Open in IMG/M
3300007076\|Ga0075435_101794066	Not Available	538	Open in IMG/M
3300007076\|Ga0075435_101978942	Not Available	512	Open in IMG/M
3300009100\|Ga0075418_12943076	Not Available	519	Open in IMG/M
3300009162\|Ga0075423_10102756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2991	Open in IMG/M
3300009174\|Ga0105241_12537637	Not Available	514	Open in IMG/M
3300009177\|Ga0105248_10673578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1167	Open in IMG/M
3300009551\|Ga0105238_11184142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	788	Open in IMG/M
3300010154\|Ga0127503_11115212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	1002	Open in IMG/M
3300010329\|Ga0134111_10399646	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010359\|Ga0126376_12341076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia ammonioxydans	580	Open in IMG/M
3300010371\|Ga0134125_10213471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	2146	Open in IMG/M
3300010371\|Ga0134125_12053936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300010397\|Ga0134124_11653321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300010399\|Ga0134127_11079625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. SID8362	866	Open in IMG/M
3300010403\|Ga0134123_13323855	Not Available	519	Open in IMG/M
3300012202\|Ga0137363_10636868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300012361\|Ga0137360_11203942	Not Available	655	Open in IMG/M
3300012487\|Ga0157321_1029864	Not Available	550	Open in IMG/M
3300012515\|Ga0157338_1064253	Not Available	558	Open in IMG/M
3300012955\|Ga0164298_10822846	Not Available	667	Open in IMG/M
3300012960\|Ga0164301_10453250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	913	Open in IMG/M
3300012984\|Ga0164309_11618667	Not Available	555	Open in IMG/M
3300012985\|Ga0164308_12297174	Not Available	501	Open in IMG/M
3300013100\|Ga0157373_11586067	Not Available	501	Open in IMG/M
3300013296\|Ga0157374_10006737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9765	Open in IMG/M
3300014325\|Ga0163163_11082985	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300014969\|Ga0157376_10119303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2335	Open in IMG/M
3300015373\|Ga0132257_102647270	Not Available	653	Open in IMG/M
3300017937\|Ga0187809_10278605	Not Available	611	Open in IMG/M
3300020081\|Ga0206354_10520008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	855	Open in IMG/M
3300021088\|Ga0210404_10307537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	873	Open in IMG/M
3300021171\|Ga0210405_11356206	Not Available	520	Open in IMG/M
3300021178\|Ga0210408_10591829	Not Available	879	Open in IMG/M
3300021178\|Ga0210408_11114702	Not Available	606	Open in IMG/M
3300021404\|Ga0210389_10795084	Not Available	739	Open in IMG/M
3300021405\|Ga0210387_11851311	Not Available	507	Open in IMG/M
3300021405\|Ga0210387_11855613	Not Available	507	Open in IMG/M
3300021420\|Ga0210394_11068088	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300021475\|Ga0210392_11503997	Not Available	503	Open in IMG/M
3300021559\|Ga0210409_11269908	Not Available	612	Open in IMG/M
3300022467\|Ga0224712_10478023	Not Available	600	Open in IMG/M
3300022467\|Ga0224712_10595413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300022504\|Ga0242642_1067669	Not Available	582	Open in IMG/M
3300022531\|Ga0242660_1100880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300022532\|Ga0242655_10328079	Not Available	505	Open in IMG/M
3300022718\|Ga0242675_1079316	Not Available	600	Open in IMG/M
3300022756\|Ga0222622_10668840	Not Available	753	Open in IMG/M
3300024254\|Ga0247661_1009450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	1610	Open in IMG/M
3300025912\|Ga0207707_11536031	Not Available	526	Open in IMG/M
3300025914\|Ga0207671_11050833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300025916\|Ga0207663_11472433	Not Available	548	Open in IMG/M
3300025916\|Ga0207663_11508687	Not Available	541	Open in IMG/M
3300025924\|Ga0207694_11691372	Not Available	533	Open in IMG/M
3300025927\|Ga0207687_10917471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	750	Open in IMG/M
3300025928\|Ga0207700_10005581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7551	Open in IMG/M
3300025941\|Ga0207711_10980368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	784	Open in IMG/M
3300025949\|Ga0207667_10076939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	3462	Open in IMG/M
3300026035\|Ga0207703_11056491	Not Available	780	Open in IMG/M
3300026121\|Ga0207683_10561430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1056	Open in IMG/M
3300027725\|Ga0209178_1381285	Not Available	532	Open in IMG/M
3300027787\|Ga0209074_10062012	Not Available	1174	Open in IMG/M
3300028381\|Ga0268264_10679703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1021	Open in IMG/M
3300028381\|Ga0268264_10967260	Not Available	857	Open in IMG/M
3300028714\|Ga0307309_10165396	Not Available	567	Open in IMG/M
3300028768\|Ga0307280_10117039	Not Available	898	Open in IMG/M
3300028807\|Ga0307305_10362286	Not Available	657	Open in IMG/M
3300028881\|Ga0307277_10373704	Not Available	636	Open in IMG/M
3300030993\|Ga0308190_1082980	Not Available	676	Open in IMG/M
3300031093\|Ga0308197_10459913	Not Available	512	Open in IMG/M
3300031094\|Ga0308199_1082616	Not Available	682	Open in IMG/M
3300031421\|Ga0308194_10191975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300031740\|Ga0307468_102340810	Not Available	520	Open in IMG/M
3300032180\|Ga0307471_100500394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1363	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.46%
Host-Associated	Host-Associated	35.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.16%
Plants	Host-Associated → Plants	34.71%
Aquatic	Environmental → Aquatic	3.31%
Human	Host-Associated → Human	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.74%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Sediment	Environmental → Aquatic → Sediment	1.65%
Digestive System	Host-Associated → Human → Digestive System	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.31%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.65%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.05%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.13%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.65%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE1_05256170	2189573002	Grass Soil	GRAADVELLNNSEDQVTEVLVFLSRVSYKVQRWWDQEPEYRVMIGVLAPGRWTISVPKSGGAVVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIDYWKVYKEDIDWRMPTRLD
FE1_05515550	2189573002	Grass Soil	EPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIDYW
Ga0062589_1017585682	3300004156	Soil	VPKSGGAIVDVKLGGSAAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAFESWKVHREEIDWRVPTRLD*
Ga0058862_124509401	3300004803	Host-Associated	VTDVLVFLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWAISVPKSGGAVVNVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDILADADALGLNHHRPTP
Ga0068868_1001460641	3300005338	Miscanthus Rhizosphere	VFLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWTISVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0070691_100151294	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GRAADVELLNNSADPVTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0070671_1006232682	3300005355	Switchgrass Rhizosphere	ADPVTDVLIFLSRVSYQVQRWWDQEPEYRVMIGVLPPGRWTISVPESGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0070714_1014415071	3300005435	Agricultural Soil	EPEYRVMIGVLPPGRWAIRVPRSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0070713_1012354401	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SVPKSGGAVVNVKLGGSPAMSRVMVIVSFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0070711_1008945821	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LLNNSEDQVTEVLVFLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWAISVPKSGGAVVNVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRIPMRLD*
Ga0070711_1017727601	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD*
Ga0070705_1016481071	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	WWDQEPDYRAMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0070708_1020783871	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GRWTISVPESGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD*
Ga0070678_1012567852	3300005456	Miscanthus Rhizosphere	ADPVTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD*
Ga0070706_1002839543	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARRARSELRRLPAAAFEYWKVHREDTDWQVPTRLN*
Ga0073909_101038272	3300005526	Surface Soil	MIGVLPPGRWAIRVPRSAGAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0070697_1006944862	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSGGAIADVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDI
Ga0070695_1015772831	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	RWTISVPKSGGAVVDVKLGGTPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0070704_1015471802	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	RATGISRWIEAKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGSRSELRRLPAAAFEYWKVHREDIDWQVPTRLN*
Ga0068855_1012744661	3300005563	Corn Rhizosphere	SRVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0070762_110076031	3300005602	Soil	LVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAISVPRSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAFEYWKVHREDIDWRVPIRLD*
Ga0068858_1021662472	3300005842	Switchgrass Rhizosphere	YRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0068860_1009931661	3300005843	Switchgrass Rhizosphere	RVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0070717_100757602	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAGSRVMVIVSFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIEWRMPTRLD*
Ga0070717_104027751	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0070717_112261551	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RWAISVPKSGGAVVNVKLGGSPAMSRVMVIVSFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0075026_1003618741	3300006057	Watersheds	VFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARGELRQLPTPAIDYWKVHKEDIDWRVPRRLD*
Ga0070716_1014724041	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPGPAIEYWKVHKEDIDWRVPTRLN*
Ga0070712_1009578091	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ADVELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIMDVKLGGSPAVSRVIAVISFTDSAGNHWARGARSELRQLPTAAIDYWKVHKENIEWRIPTRLD*
Ga0070712_1014544851	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0079222_102709573	3300006755	Agricultural Soil	VSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0079221_103097613	3300006804	Agricultural Soil	GQAADVELLNNSADPVTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWQVPTRLD*
Ga0079221_111410541	3300006804	Agricultural Soil	WDQEPEYRVMIGVLAPGRWTISVPKSGGAVVNVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPTRLD*
Ga0079220_102723841	3300006806	Agricultural Soil	MIGVLPPGRWTISLPESGGAIVDVKLGGSAAMSRVMVIISFTDNAGNHWARGARGELRQLRAPAIEYWKIRKEDIDWRVPTRLD*
Ga0075433_115209391	3300006852	Populus Rhizosphere	ADVELLNNSEDPVTDVLIFLSRVSYQVQRWWDQEPEHRVMIGVLPPGRWAISVARSGGAIVDVKLGGSPAMSRVIVIISFTDSAGNHWARGARGELRQLPTPAIEYWKVHREDIDWRVPTRLD*
Ga0075425_1002627221	3300006854	Populus Rhizosphere	PQLRGQAADVELLNNSEDPVTDVLIFLSRVSYQVQRWWDQKPEHRVMIGVLPPGRWAISVARSGGAIVDVKLGGSPAMSRVIVIISFTDSAGNHWARGARGELRQLPTPAIEYWKVHREDIDWRVPTRLD*
Ga0075425_1011438002	3300006854	Populus Rhizosphere	ELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPDYRVMIGVLPPGRWAIRVPRSGGAIVDVKLGGSSAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRAPTRLN
Ga0075425_1028380711	3300006854	Populus Rhizosphere	VELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHKEDIDWRVPTRLN*
Ga0075434_1003615681	3300006871	Populus Rhizosphere	YRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPGPAIEYWKVHKEDIDWRVPTRLN*
Ga0075434_1022350531	3300006871	Populus Rhizosphere	ADVELLNNSEDPVTDVLIFLSRVSYQVQRWWDQEPEHRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRMMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKIHKEDIDWRAPTRLD*
Ga0075424_1016988782	3300006904	Populus Rhizosphere	LLNNSEDPVTDVLIFLSRVSYQVQRWWDQEPEHRVMIGVLPPGRWAISVARSGGAIVDVKLGGSPAMSRMMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKIHKEDIDWRAPTRLD*
Ga0075424_1021230551	3300006904	Populus Rhizosphere	AADVELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHKEDIDWRVPTRLN*
Ga0075436_1005016102	3300006914	Populus Rhizosphere	MIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWQVPTRLD*
Ga0075436_1005190651	3300006914	Populus Rhizosphere	VTDVLIFLSRVSYQVQRWWDQKPEHRVMIGVLPPGRSAISVARSGGAIVDVKLGGSPAMSRVIVIISFTDSAGNHWARGARGELRQLPTPAIEYWKVHREDIDWRVPTRLD*
Ga0075436_1006567451	3300006914	Populus Rhizosphere	EYRVMIGVLAPGRWTISVPKSGGAVVNVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPTRLD*
Ga0075436_1007697263	3300006914	Populus Rhizosphere	VMIGVLPPGRWAISVARSGGAIVDVKLGGSPAMSRMMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKIHKEDIDWRAPTRLD*
Ga0079219_119570861	3300006954	Agricultural Soil	YKVQRWWDQEPEYRVMIGVLPPGRWTISVPESGGAIVEVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPSPAIEYWKVHKEDIDWRVPTRLD*
Ga0075435_1002958871	3300007076	Populus Rhizosphere	FLSRVSYKVQRWWDQEPEYRVMIGVLAPGRWTISVPKSGGAVVNVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPTRLD*
Ga0075435_1017940662	3300007076	Populus Rhizosphere	GRWAISVARSGGAIVDVKLGGSPAMSRMMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKIHKEDIDWRAPTRLD*
Ga0075435_1019789421	3300007076	Populus Rhizosphere	DPVTDVLVFLSRVSYEVQRWWDQEPEYRVMIGVLPPGRWAIRVPRSGGAIVDVKLGGSSAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRAPTRLN*
Ga0075418_129430761	3300009100	Populus Rhizosphere	KSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPGPAIEYWKVHKEDIDWRVPTRLN*
Ga0075423_101027564	3300009162	Populus Rhizosphere	MIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPGPAIEYWKVHKEDIDWRVPTRLN*
Ga0105241_125376371	3300009174	Corn Rhizosphere	ADVELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLAPGRWTVSVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0105248_106735781	3300009177	Switchgrass Rhizosphere	SDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPRSAGAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0105238_111841422	3300009551	Corn Rhizosphere	LSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0127503_111152121	3300010154	Soil	ISVPKGGGAIVDVKLGGSAAGSRVIVVISFTDSAGNHWARGARSELRRLPTAAFEYWKVHREDIDWRVPTRLD*
Ga0134111_103996462	3300010329	Grasslands Soil	VMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHQEDIDWRVPTRLN*
Ga0126376_123410762	3300010359	Tropical Forest Soil	NNSADPVTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPDSGGAIVDVKLGGSPATSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHAEDIDWQVPTRLD*
Ga0134125_102134711	3300010371	Terrestrial Soil	LRGRAADVELLNNSEDQVTEVLVFLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWTISVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0134125_120539362	3300010371	Terrestrial Soil	YRVMIGVLPPGRWTISVPESGGAIVDVKLGGSPAMTRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD*
Ga0134124_116533212	3300010397	Terrestrial Soil	SRVSYKVQRWWDQEPDYRAMIGVLPPGRWTISVPQSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD*
Ga0134127_110796251	3300010399	Terrestrial Soil	TISVPKSGGAIMDVKLGGSPAVSRVIAVISFTDSAGNHWARGARSELRQLPTAAIDYWKVHKENIEWRIPTRLD*
Ga0134123_133238551	3300010403	Terrestrial Soil	DPVTDVLIFLSRVSYQVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0137363_106368682	3300012202	Vadose Zone Soil	DPVTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPIPAIDYWKVHKEDIDWRAPTRLD*
Ga0137360_112039421	3300012361	Vadose Zone Soil	EPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPIPAIDYWKVHKEDIDWRAPTRLD*
Ga0157321_10298641	3300012487	Arabidopsis Rhizosphere	LNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0157338_10642531	3300012515	Arabidopsis Rhizosphere	AADVELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0164298_108228462	3300012955	Soil	VTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRMPMRLD*
Ga0164301_104532501	3300012960	Soil	DVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0164309_116186671	3300012984	Soil	YRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKADIDWRAPRRLD*
Ga0164308_122971741	3300012985	Soil	MIGVLPPGRWAIRVPKSADAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0157373_115860672	3300013100	Corn Rhizosphere	FLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAINVPKSSGAIVEVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN*
Ga0157374_100067379	3300013296	Miscanthus Rhizosphere	VTEVLVFLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWTISVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD*
Ga0163163_110829851	3300014325	Switchgrass Rhizosphere	RWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD*
Ga0157376_101193031	3300014969	Miscanthus Rhizosphere	EPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD*
Ga0132257_1026472702	3300015373	Arabidopsis Rhizosphere	DPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPGPAIEYWKVHKEDIDWRMPTRLN*
Ga0187809_102786051	3300017937	Freshwater Sediment	NSEDPVTDVLVFLSRVSYKVQRWWDQEPDYRVMIGVLPPGRWAISVPKSGGAVVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPARLD
Ga0206354_105200081	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	FLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWTISVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD
Ga0210404_103075371	3300021088	Soil	GVLPPGRWAISVPKSGGAIVDVKLGGAPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLD
Ga0210405_113562062	3300021171	Soil	QRWWDQEPEYRVMIGVLPPGRWKISVPKMGGAIAQVKLGGSAAVSRVMVIISFTDGAGNHWARGARGELRQLPTAAIDYWKVHQEDVDWQVPSRLD
Ga0210408_105918291	3300021178	Soil	PPGHRRAGRYRVMIGVLAPGRWTIGVPKSGGALVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVHKEDIDWRVPTRLD
Ga0210408_111147021	3300021178	Soil	AADVELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSGGAIVDVKLGGTPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREEIDWRVPTRLD
Ga0210389_107950841	3300021404	Soil	PVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAISVPKSGGAIVDVKLGGAPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0210387_118513111	3300021405	Soil	REGDVELLNTSAEPVTEVLVFLARVSYKVQRWWDQEPEYRVMIGVLPPGRWKISVPKMGGAIAQVKLGGSAAVSRVMVIISFTDGAGNHWARGARGELRQLPTAAIDYWKVHQEDVDWQVPSRLD
Ga0210387_118556131	3300021405	Soil	KVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSADAIVNVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRSN
Ga0210394_110680882	3300021420	Soil	VTDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPESGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWK
Ga0210392_115039972	3300021475	Soil	GRWTISVPKSGGAIVDVKLGESPAGTRVMVIVSFTDSASNHWARGARSELRQLPAAAIDYWKIHQEDVDWRVPTRLD
Ga0210409_112699082	3300021559	Soil	PPGRWAISVPKSGGAIVDVKLGGAPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0224712_104780232	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VFLSRVSYKVQRWWDQEPEYRAMIGVLAPGRWTISVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD
Ga0224712_105954132	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	RVMIGVLPPGRWAIRVPKSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0242642_10676691	3300022504	Soil	RGRAADVELLNNPEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAISVPKSGGAIVDVKLGGAPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0242660_11008803	3300022531	Soil	ISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHKEDIDWRVPTRLD
Ga0242655_103280791	3300022532	Soil	SYKVQRWWDQEPEYRVMIGVLPPGRWAISVPKSGGAIVDVKLGGAPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREEIDWRVPTRLD
Ga0242675_10793161	3300022718	Soil	VQRWWDQEPEYRVMIGVLPPGRWAISVPKGGGAIVDVKLGGSAAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0222622_106688401	3300022756	Groundwater Sediment	MIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPTPAIEYWKVHKEDIDWRVPTRLN
Ga0247661_10094501	3300024254	Soil	KVQRWWDQEPEYRAMIGVLAPGRWTISVPKSGGAVVDVKLGGTPALSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD
Ga0207707_115360311	3300025912	Corn Rhizosphere	RWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD
Ga0207671_110508332	3300025914	Corn Rhizosphere	WTISVPKSGGAVVDVKLGGSPALSRVMVIISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0207663_114724331	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LRGRVADVELLNNSEDPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0207663_115086871	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VPKSGGAIVDVKLGGSPAGSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIEWRIPTRLD
Ga0207694_116913721	3300025924	Corn Rhizosphere	DVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD
Ga0207687_109174711	3300025927	Miscanthus Rhizosphere	ELEYRVMIGVLPPGRWAISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRVPTRLN
Ga0207700_100055817	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD
Ga0207711_109803682	3300025941	Switchgrass Rhizosphere	SAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0207667_100769392	3300025949	Corn Rhizosphere	VTDVLIFLSRVSYQVQRWWDQEPEYRVMIGVLPPGRWTISVPESGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD
Ga0207703_110564912	3300026035	Switchgrass Rhizosphere	DVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWAIRVPKSAGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTHLN
Ga0207683_105614302	3300026121	Miscanthus Rhizosphere	TDVLIFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLPTPAIEYWKVQREDIDWQVPTRLD
Ga0209178_13812851	3300027725	Agricultural Soil	MIGVLPPGRWTISLPESGGAIVDVKLGGSAAMSRVMVIISFTDNAGNHWARGARGELRQLRAPAIEYWKIRKEDIDWRVPTRLD
Ga0209074_100620121	3300027787	Agricultural Soil	VSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD
Ga0268264_106797033	3300028381	Switchgrass Rhizosphere	VSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRRLPAAAFEYWKVHREDIDWRVPTRLN
Ga0268264_109672602	3300028381	Switchgrass Rhizosphere	RVSYKVQRWWDQEPEYRVMIGVLPPGRWTIRVPKSGGAIVDVKLGGSPAMSRVMVIISFTDNAGNHWARGARGELRQLTTPAIDYWKVNKEDIDWRAPRRLD
Ga0307309_101653962	3300028714	Soil	WTISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAIDYWKVHKENIEWRMPTRLD
Ga0307280_101170392	3300028768	Soil	LNNSEDPVTDLLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAIDYWKVHKENIEWRMPTRLD
Ga0307305_103622861	3300028807	Soil	VQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRVPTRLN
Ga0307277_103737041	3300028881	Soil	NSADPVTDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHQEDIDWRVPTRLN
Ga0308190_10829802	3300030993	Soil	IGVLPPGRWTISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAIDYWKVHKENIEWRMPTRLD
Ga0308197_104599132	3300031093	Soil	LPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRVPTRWN
Ga0308199_10826162	3300031094	Soil	TISVPKSGGAIVDVKLGGSPAGSRVIAVISFTDSAGNHWARGARSELRQLPTAAIDYWKVHKENIEWRMPTRLD
Ga0308194_101919751	3300031421	Soil	SGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRVPTRLN
Ga0307468_1023408101	3300031740	Hardwood Forest Soil	KSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARSELRQLPTAAIEYWKVHKEDIDWRMPMRLD
Ga0307471_1005003942	3300032180	Hardwood Forest Soil	DPVPDVLVFLSRVSYKVQRWWDQEPEYRVMIGVLPPGRWTISVPKSGGAIVDVKLGGSPAMSRVMVIISFTDSAGNHWARGARGELRQLPAPAIEYWKVHKEDIDWRVPTRLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072650

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences