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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F072745 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 121 |
| Average Sequence Length | 50 residues |
| Representative Sequence | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV |
| Number of Associated Samples | 106 |
| Number of Associated Scaffolds | 121 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 50.41 % |
| % of genes near scaffold ends (potentially truncated) | 39.67 % |
| % of genes from short scaffolds (< 2000 bps) | 86.78 % |
| Associated GOLD sequencing projects | 99 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (74.380 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (13.223 % of family members) |
| Environment Ontology (ENVO) | Unclassified (67.769 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (92.562 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 50.98% β-sheet: 0.00% Coil/Unstructured: 49.02% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 121 Family Scaffolds |
|---|---|---|
| PF13884 | Peptidase_S74 | 0.83 |
| PF01068 | DNA_ligase_A_M | 0.83 |
| PF04404 | ERF | 0.83 |
| PF12684 | DUF3799 | 0.83 |
| PF13385 | Laminin_G_3 | 0.83 |
| PF08299 | Bac_DnaA_C | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 121 Family Scaffolds |
|---|---|---|---|
| COG0593 | Chromosomal replication initiation ATPase DnaA | Replication, recombination and repair [L] | 0.83 |
| COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.83 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.83 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 74.38 % |
| All Organisms | root | All Organisms | 25.62 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 13.22% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 13.22% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 12.40% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 8.26% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 5.79% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 4.96% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 4.13% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 4.13% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 4.13% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 3.31% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 3.31% |
| Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 3.31% |
| Deep Ocean | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean | 2.48% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 2.48% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 1.65% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.65% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 1.65% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 1.65% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 0.83% |
| Marine | Environmental → Aquatic → Marine → Coastal → Sediment → Marine | 0.83% |
| Marine Surface Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water | 0.83% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 0.83% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 0.83% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 0.83% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment | 0.83% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment | 0.83% |
| Marine Brown Algae (Kelp) Associated | Host-Associated → Algae → Brown Algae → Unclassified → Unclassified → Marine Brown Algae (Kelp) Associated | 0.83% |
| Ocean Water | Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2008193000 | Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer | Environmental | Open in IMG/M |
| 3300000224 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m | Environmental | Open in IMG/M |
| 3300001353 | Pelagic Microbial community sample from North Sea - COGITO 998_met_09 | Environmental | Open in IMG/M |
| 3300001419 | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m) | Environmental | Open in IMG/M |
| 3300001472 | Marine viral communities from the Pacific Ocean - LP-32 | Environmental | Open in IMG/M |
| 3300001589 | Marine viral communities from the Pacific Ocean - LP-40 | Environmental | Open in IMG/M |
| 3300003216 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA | Environmental | Open in IMG/M |
| 3300003345 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA | Environmental | Open in IMG/M |
| 3300003409 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA | Environmental | Open in IMG/M |
| 3300004097 | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG | Environmental | Open in IMG/M |
| 3300004448 | Marine viral communities from Newfoundland, Canada BC-1 | Environmental | Open in IMG/M |
| 3300004457 | Marine viral communities from Newfoundland, Canada MC-1 | Environmental | Open in IMG/M |
| 3300005512 | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water | Environmental | Open in IMG/M |
| 3300005732 | Seawater microbial communities from Vineyard Sound, MA, USA - Succinate ammended T7 | Environmental | Open in IMG/M |
| 3300005738 | Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0 | Environmental | Open in IMG/M |
| 3300005747 | Seawater microbial communities from Vineyard Sound, MA, USA - control T14 | Environmental | Open in IMG/M |
| 3300005748 | Seawater microbial communities from Vineyard Sound, MA, USA - control T7 | Environmental | Open in IMG/M |
| 3300005837 | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 | Environmental | Open in IMG/M |
| 3300005941 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 | Environmental | Open in IMG/M |
| 3300006165 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA | Environmental | Open in IMG/M |
| 3300006484 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 | Environmental | Open in IMG/M |
| 3300006737 | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG | Environmental | Open in IMG/M |
| 3300006752 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300006920 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 | Environmental | Open in IMG/M |
| 3300006921 | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG | Environmental | Open in IMG/M |
| 3300007236 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300008956 | Marine microbial communities from eastern North Pacific Ocean - P8 free-living McLane | Environmental | Open in IMG/M |
| 3300008999 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 | Environmental | Open in IMG/M |
| 3300009026 | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 | Environmental | Open in IMG/M |
| 3300009428 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 | Environmental | Open in IMG/M |
| 3300009440 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 | Environmental | Open in IMG/M |
| 3300009467 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 | Environmental | Open in IMG/M |
| 3300009496 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 | Environmental | Open in IMG/M |
| 3300010149 | Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG | Environmental | Open in IMG/M |
| 3300010150 | Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG | Environmental | Open in IMG/M |
| 3300010153 | Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG | Environmental | Open in IMG/M |
| 3300010385 | Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA . Combined Assembly of Gp0155292, Gp0155293 | Host-Associated | Open in IMG/M |
| 3300011261 | Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02 | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017724 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17 | Environmental | Open in IMG/M |
| 3300017726 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 | Environmental | Open in IMG/M |
| 3300017729 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11 | Environmental | Open in IMG/M |
| 3300017730 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13 | Environmental | Open in IMG/M |
| 3300017734 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2) | Environmental | Open in IMG/M |
| 3300017744 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23 | Environmental | Open in IMG/M |
| 3300017746 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29 | Environmental | Open in IMG/M |
| 3300017749 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 | Environmental | Open in IMG/M |
| 3300017765 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28 | Environmental | Open in IMG/M |
| 3300017769 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2) | Environmental | Open in IMG/M |
| 3300017773 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24 | Environmental | Open in IMG/M |
| 3300017779 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16 | Environmental | Open in IMG/M |
| 3300017782 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19 | Environmental | Open in IMG/M |
| 3300018682 | Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1 | Environmental | Open in IMG/M |
| 3300020166 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 | Environmental | Open in IMG/M |
| 3300020169 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1 | Environmental | Open in IMG/M |
| 3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
| 3300020385 | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) | Environmental | Open in IMG/M |
| 3300020595 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1 | Environmental | Open in IMG/M |
| 3300021085 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 | Environmental | Open in IMG/M |
| 3300021169 | Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021185 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 | Environmental | Open in IMG/M |
| 3300021325 | Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021336 | Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021350 | Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021365 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1 | Environmental | Open in IMG/M |
| 3300021389 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300022068 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2) | Environmental | Open in IMG/M |
| 3300022071 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2) | Environmental | Open in IMG/M |
| 3300022183 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3) | Environmental | Open in IMG/M |
| 3300023109 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG | Environmental | Open in IMG/M |
| 3300023210 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG | Environmental | Open in IMG/M |
| 3300024185 | Seawater microbial communities from Monterey Bay, California, United States - 84D | Environmental | Open in IMG/M |
| 3300024250 | Seawater microbial communities from Monterey Bay, California, United States - 58D_r | Environmental | Open in IMG/M |
| 3300024267 | Seawater microbial communities from Monterey Bay, California, United States - 28D | Environmental | Open in IMG/M |
| 3300024292 | Seawater microbial communities from Monterey Bay, California, United States - 37D | Environmental | Open in IMG/M |
| 3300024293 | Seawater microbial communities from Monterey Bay, California, United States - 63D | Environmental | Open in IMG/M |
| 3300024318 | Seawater microbial communities from Monterey Bay, California, United States - 46D | Environmental | Open in IMG/M |
| 3300024321 | Seawater microbial communities from Monterey Bay, California, United States - 31D | Environmental | Open in IMG/M |
| 3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
| 3300024420 | Seawater microbial communities from Monterey Bay, California, United States - 40D | Environmental | Open in IMG/M |
| 3300025137 | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) | Environmental | Open in IMG/M |
| 3300025276 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) | Environmental | Open in IMG/M |
| 3300025626 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) | Environmental | Open in IMG/M |
| 3300025636 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025645 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes) | Environmental | Open in IMG/M |
| 3300025652 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes) | Environmental | Open in IMG/M |
| 3300025695 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025767 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300026505 | Seawater microbial communities from Monterey Bay, California, United States - 59D | Environmental | Open in IMG/M |
| 3300026511 | Seawater microbial communities from Monterey Bay, California, United States - 27D | Environmental | Open in IMG/M |
| 3300026513 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 51R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300027631 | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes) | Environmental | Open in IMG/M |
| 3300027672 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027833 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) | Environmental | Open in IMG/M |
| 3300028109 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028135 | Seawater microbial communities from Monterey Bay, California, United States - 7D | Environmental | Open in IMG/M |
| 3300028233 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - MB_1026D (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028282 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031565 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-2 | Environmental | Open in IMG/M |
| 3300031578 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 | Environmental | Open in IMG/M |
| 3300031669 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 | Environmental | Open in IMG/M |
| 3300031774 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| 2008197649 | 2008193000 | Marine | MKTFTQFFNANANHHSFVQFKTNFDNLTEDQMDQIEYGMCVDYDDYLLEHS |
| SI34jun09_10mDRAFT_10529531 | 3300000224 | Marine | MITFKQFFNDNANHYSFIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV* |
| JGI20159J14440_101544381 | 3300001353 | Pelagic Marine | MITFTQFFNENANHYSLIKYKTNYANLTDEQMEQIDYEVGIEWVDYRMERV* |
| JGI11705J14877_101764902 | 3300001419 | Saline Water And Sediment | MITFXXFFNENANHYSLIKYKTSYSNLTDEQMEQIDYEVGIEWTDYRMERV* |
| JGI24004J15324_101627942 | 3300001472 | Marine | FFNDNANHHSFVKYGTNFGRLTYEQMEQIEYELGIDYDDYRTEHV* |
| JGI24005J15628_101997942 | 3300001589 | Marine | MITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYCTEHV* |
| JGI26079J46598_10714021 | 3300003216 | Marine | DNIYVTKRVIHMITFKQFFNDNANHYSFIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV* |
| JGI26080J50196_10929011 | 3300003345 | Marine | MITFKQFFNDNANHYSXIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV* |
| JGI26088J50261_10796281 | 3300003409 | Marine | MITFKQFFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV* |
| Ga0055584_1019782571 | 3300004097 | Pelagic Marine | TFTQFFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV* |
| Ga0065861_10047595 | 3300004448 | Marine | MITFKQFFNDNANHYSLIKYKTNFANLTDDQMEQIEYEVGIEWVDYRMERV* |
| Ga0066224_10106511 | 3300004457 | Marine | VTKRVIHMITFKQFFNDNANHYSLIKYKTNFANLTDDQMEQIEYEVGIEWVDYRMERV* |
| Ga0074648_10563384 | 3300005512 | Saline Water And Sediment | MITFTQFFNENANHYSLIKYKTSYSNLTDEQMEQIDYEVGIEWTDYRMERV* |
| Ga0076920_1046532 | 3300005732 | Marine | DNIYVTKRVIHMITFKQFFNENADHYSFIKYGTNFGRLTYEQMEQIEYEVGIEWIDYRMERV* |
| Ga0076926_1157641 | 3300005738 | Marine | MITFKQFFNENANHYSLIKYKTNFANLTDDQMEQIEYEVGIEWVDYRMERV* |
| Ga0076924_10001931 | 3300005747 | Marine | KRVIHMITFKQFFNENADHYSFIKYGTNFGRLTYEQMEQIEYEVGIEWIDYRMERV* |
| Ga0076925_10450292 | 3300005748 | Marine | MITFKQFFNENADHYSFIKYGTNFGRLTYEQMEQIEYEVGIEWIDYRMERV* |
| Ga0078893_1110046325 | 3300005837 | Marine Surface Water | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV* |
| Ga0070743_102003092 | 3300005941 | Estuarine | MITFKQFFNENANHHAFIKFKTNFTNLTDDQMKDIEYEMQIDWDDYRMERS* |
| Ga0075443_100007392 | 3300006165 | Marine | MKTFTQFFNANANHHSFVQFKTNFDNLTEDQMDQIEYGMCVDYDDYLLEHS* |
| Ga0070744_101618592 | 3300006484 | Estuarine | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWADYRMERV* |
| Ga0098037_12336021 | 3300006737 | Marine | IHMITFKQFFNDNANHYSFVKYGTNFGRLTYEQMEQIEYELTIDWDDYRAEHV* |
| Ga0098048_10243952 | 3300006752 | Marine | MTTFTEFFYENANHYSFVKYGTNFRSLTDEQMEQVEYELTIDWDDCRAERV* |
| Ga0070750_101980202 | 3300006916 | Aqueous | MITFTQFFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV* |
| Ga0070750_103285961 | 3300006916 | Aqueous | MITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIEYEIGIDWDDYRAEHV* |
| Ga0070748_10640653 | 3300006920 | Aqueous | MITFTQFFNENANHYSLIKYKTSYANLTDDQMEQIDYEVGIEWRDYRMERV* |
| Ga0070748_12891601 | 3300006920 | Aqueous | MITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIEYEIGIDWDDYRQEHV* |
| Ga0070748_13149511 | 3300006920 | Aqueous | MITFKQFFNENVNHYSLIKYKTSYANLTDDQMEQIEYEVGIEWTDYRMERV* |
| Ga0098060_10366341 | 3300006921 | Marine | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDWDDYRAEHV* |
| Ga0075463_101484951 | 3300007236 | Aqueous | FFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV* |
| Ga0075463_103093722 | 3300007236 | Aqueous | TFKQFFNENANHYSLIKYKTNFANLTDDQMEQIEYEVGIEWVDYRMERV* |
| Ga0070752_13094602 | 3300007345 | Aqueous | MITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYLSEHV* |
| Ga0070752_13899521 | 3300007345 | Aqueous | DNIYVTKRVIHMITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIEYEIGIDWDDYRQEHV* |
| Ga0099847_10546532 | 3300007540 | Aqueous | MITFKQFFNENANHYSLIKYKTNFANLADDQMEQIEYEVGIEWVDYRMERV* |
| Ga0104261_10293743 | 3300008956 | Ocean Water | RTFKQFFNENANHHSFIKYKTNFANLTDEQMGQIEYEMGIDWVDYRMERV* |
| Ga0102816_100137217 | 3300008999 | Estuarine | MITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYRNEHV* |
| Ga0102816_10903812 | 3300008999 | Estuarine | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV* |
| Ga0102829_10759483 | 3300009026 | Estuarine | ENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWADYRMERV* |
| Ga0114915_10312611 | 3300009428 | Deep Ocean | MKTFTQFFNANANHHSFVQFKTNFDNLTDDQMDQIEYGMCVDYDDYL |
| Ga0114915_11282073 | 3300009428 | Deep Ocean | FFNANANHHSFVQFKTNFDNLTDDQMDQIEYGMCVDYDDYLLEHS* |
| Ga0115561_13369892 | 3300009440 | Pelagic Marine | MITFKQFSNENANHYSLIKYKTSYANLTDDQMEQIDYEVGIEWRDYRMERV* |
| Ga0115565_102169233 | 3300009467 | Pelagic Marine | MITFTQFFNENANHYSLIKYKTSYSNLTDEQMEQIDYEVGIEWRDYRMERV* |
| Ga0115570_103477461 | 3300009496 | Pelagic Marine | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERS* |
| Ga0098049_12551511 | 3300010149 | Marine | YVTKRVIHMTTFTEFFYENANHYSFVKYGTNFRSLTDEQMEQIEYEIGIEWVDYRMERV* |
| Ga0098056_12809631 | 3300010150 | Marine | MITFKQYFNDNANNHSFVTYGTSFGRLTYEQMEQIEYEMSIDYDDYRAEHV* |
| Ga0098059_12613891 | 3300010153 | Marine | FKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV* |
| Ga0136809_11806393 | 3300010385 | Marine Brown Algae (Kelp) Associated | MITFKQFFNENANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV* |
| Ga0151661_11078392 | 3300011261 | Marine | MITFKQFFNDNVNHYSLIKYKTNFANLTDDQMEQIEYEVGIEWVDYRMERV* |
| Ga0180120_103714291 | 3300017697 | Freshwater To Marine Saline Gradient | MTTFTEFFYDNANHYSFVKYGTNFRSLTDDQMEQIEYEIGIDWNDYRQEHV |
| Ga0181388_10216594 | 3300017724 | Seawater | MITFKQFFNENANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWIDYRMERV |
| Ga0181381_11296661 | 3300017726 | Seawater | NMITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDYDDYRTERV |
| Ga0181396_10627012 | 3300017729 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIE |
| Ga0181417_10606493 | 3300017730 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDYDDYLAEHV |
| Ga0187222_11048492 | 3300017734 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYEIGIDYDDYS |
| Ga0187222_11098371 | 3300017734 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGID |
| Ga0181397_10811211 | 3300017744 | Seawater | SFVKYGTNFGRLTYVQMEQIEYELSIDWDDYRAEHV |
| Ga0181397_11024083 | 3300017744 | Seawater | NMITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIENELGIDYDDYRTEHV |
| Ga0181389_11492841 | 3300017746 | Seawater | NANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV |
| Ga0181392_11890492 | 3300017749 | Seawater | QFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV |
| Ga0181413_12223781 | 3300017765 | Seawater | HMITFKQFFNENANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV |
| Ga0187221_11381931 | 3300017769 | Seawater | DNIYVTKRVIHMITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0187221_12508401 | 3300017769 | Seawater | YVTKRVIHMITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0181386_11785823 | 3300017773 | Seawater | NMITFKQFFNDNANHYSFVKYGTNFGRLTFTQKEQIEYELGIDYDDYRTEHV |
| Ga0181395_11324922 | 3300017779 | Seawater | MITFKQFFNDNANHYSFVKYGTNFRRLTYVQMEQIEYELSIDWDDYRAEHV |
| Ga0181380_10912402 | 3300017782 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYRTEHV |
| Ga0188851_10138391 | 3300018682 | Freshwater Lake | MITFKQFFNENANHYSLIKYKTSYANLTDDQMEQIDYEVGIDWVDYRMERV |
| Ga0206128_11391763 | 3300020166 | Seawater | NDNANHYSFVKYGTNFRSLTDDQMEQIEYEIGIDWDDYRAEHV |
| Ga0206127_11043512 | 3300020169 | Seawater | MITFTEFFYENANHYSFVKYGTNFRSLTDDQMEQIEYEIGIEWVDYRMERV |
| Ga0206131_102977743 | 3300020185 | Seawater | QFFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV |
| Ga0206131_103882531 | 3300020185 | Seawater | MITFKQFFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV |
| Ga0211677_102710803 | 3300020385 | Marine | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDWDDYRAEHV |
| Ga0206126_103321231 | 3300020595 | Seawater | MITFTEFFYENANHYSFVKYGTNFRSLTDDQMEQIEYEIGIEWVDYRMERS |
| Ga0206677_100414901 | 3300021085 | Seawater | TFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0206677_102933611 | 3300021085 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIEYELSIDWDDYRAEHV |
| Ga0206687_11036111 | 3300021169 | Seawater | HSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0206682_100049659 | 3300021185 | Seawater | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERI |
| Ga0206682_102694433 | 3300021185 | Seawater | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0210301_11030671 | 3300021325 | Estuarine | MITFKQFFNDNANHYSLIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV |
| Ga0210307_14030631 | 3300021336 | Estuarine | MITFKQFFNENANHHSFIKYKTNFANLTDEQMGQIEYEMGIDWVDYRMERV |
| Ga0206692_11754863 | 3300021350 | Seawater | ITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0206123_1000030438 | 3300021365 | Seawater | MTTFTEFFYDNANHYSFVKYGTNFRSLTDDQMEQIEYEIGIDWDDYRAEHV |
| Ga0213868_100566053 | 3300021389 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIEYEIGIDWDDYRQEHV |
| Ga0222717_106593742 | 3300021957 | Estuarine Water | MITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYRTEHV |
| Ga0212021_10313823 | 3300022068 | Aqueous | MITFTQFFNENANHYSLIKYKTSYSNLTDDQMEQIDYEVGIEWRDYRMERV |
| Ga0212028_10818132 | 3300022071 | Aqueous | MITFKQFFNENANHYSLIKYKTNFANLTDDQMEQIEYEVGIEWVDYRMERV |
| Ga0196891_10721342 | 3300022183 | Aqueous | MITFTQFFNENANHYSLIKYKTSYSNLTDDQMEQIGYEVGIEWRDYRMERV |
| (restricted) Ga0233432_104298091 | 3300023109 | Seawater | ANHYSLIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV |
| (restricted) Ga0233412_100947121 | 3300023210 | Seawater | MITFKQFFNDNANHYSFIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV |
| Ga0228669_10688921 | 3300024185 | Seawater | MITFKQFFNENANHHAFIKFKTNFTNLTDDQMKDIEYEMQIDWDDYRMERS |
| Ga0228677_10396771 | 3300024250 | Seawater | FIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0228623_11055741 | 3300024267 | Seawater | PKEINMITFKQFFNDNANHYSFVKYGTNFGRLTYVQMEQIEYELSIDWDDYRAEHV |
| Ga0228630_10559271 | 3300024292 | Seawater | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV |
| Ga0228651_10213381 | 3300024293 | Seawater | DNNMITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDYDDYRTEHV |
| Ga0233400_10037557 | 3300024318 | Seawater | MITFKQFFNENANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV |
| Ga0228626_11162883 | 3300024321 | Seawater | NANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0244775_100218905 | 3300024346 | Estuarine | MITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYRNEHV |
| Ga0228632_10182611 | 3300024420 | Seawater | CYIYVTKRVIHMITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0209336_100220204 | 3300025137 | Marine | MITFKQFFNDNANHHSFVKYGTNFGRLTYEQMEQIEYEMGIDYDDYCTEHV |
| Ga0208814_10095814 | 3300025276 | Deep Ocean | MKTFTQFFNANANHHSFVQFKTNFDNLTDDQMDQIEYGMCVDYDDYLLEHS |
| Ga0209716_100203113 | 3300025626 | Pelagic Marine | MITFTQFFNENANHYSLIKYKTNYANLTDEQMEQIDYEVGIEWVDYRMERV |
| Ga0209716_10089272 | 3300025626 | Pelagic Marine | MITFTEFFYENANHYSFVKYGTNFRSLTDDQMEQIEYEIGIEWIDYRMERS |
| Ga0209136_10361831 | 3300025636 | Marine | TFKQFFNDNANHYSLIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV |
| Ga0208643_11165422 | 3300025645 | Aqueous | MITFTQFFNENANHYSLIKYKTSYANLTDDQMEQIDYEVGIEWRDYRMERV |
| Ga0208134_10665553 | 3300025652 | Aqueous | DNANHYSFVKYGTNFGRLTYVQMEQIEYEIGIDWDDYRQEHV |
| Ga0209653_12186241 | 3300025695 | Marine | MITFKQFFNENANHYSLIKYKTSYSNLTDEQMEQIDYEVGIEWRDYRMERV |
| Ga0209137_11960062 | 3300025767 | Marine | MITFKQFFNENANHYSLIKYKTNFTNLTDDQMEQIEYEVGIEWVDYRMERV |
| Ga0228647_10857962 | 3300026505 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDYDDYRTEHV |
| Ga0233395_10795931 | 3300026511 | Seawater | HHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV |
| Ga0247590_11587011 | 3300026513 | Seawater | HMITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV |
| Ga0208133_10656993 | 3300027631 | Estuarine | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWADYRMERV |
| Ga0209383_10451656 | 3300027672 | Marine | QFFNANANHHSFVQFKTNFDNLTEDQMDQIEYGMCVDYDDYLLEHS |
| Ga0209383_11125672 | 3300027672 | Marine | MKTFTQFFNANANHHSFVQFKTNFDNLTENQMDQIEYGMCVDYDDYLLEHS |
| Ga0209092_100707482 | 3300027833 | Marine | MITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERS |
| Ga0247582_11387281 | 3300028109 | Seawater | IHMITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV |
| Ga0228606_10356011 | 3300028135 | Seawater | MITFKQFFNDNANHYSFVKYGTNFGRLTFTQMEQIEYELGIDYDDYRTERV |
| Ga0256417_10816574 | 3300028233 | Seawater | VIHMITFKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWVDYRMERV |
| Ga0256413_12461033 | 3300028282 | Seawater | FKQFFNENANHHSFIKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
| Ga0307379_111425152 | 3300031565 | Soil | MITFKQFFNDNANHYSLIKYKTSYANLTDDQMEQIDYEVGIDWVDYRME |
| Ga0307376_105630862 | 3300031578 | Soil | MITFKQFFNENANHYSLIKYKTNYANLTDDQMEQIDYEVGIEWRDYRMERV |
| Ga0307375_107272361 | 3300031669 | Soil | MITFKQFFNENANHYSLIKYKTNYANLTDDQMEQIDYEVGIEWVDYRMERV |
| Ga0315331_109506821 | 3300031774 | Seawater | MITFKQFFNENANHHSFVKYKTNFANLTDEQMEQIEYEMGIDWIDYRMERV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |