Metagenome / Metatranscriptome Family F073294

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073294
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	43 residues
Representative Sequence	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFED
Number of Associated Samples	98
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.83 %
% of genes near scaffold ends (potentially truncated)	90.83 %
% of genes from short scaffolds (< 2000 bps)	93.33 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.833 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.667 % of family members)
Environment Ontology (ENVO)	Unclassified (51.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (47.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 21.92% Coil/Unstructured: 78.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02826	2-Hacid_dh_C	5.00
PF00106	adh_short	3.33
PF00171	Aldedh	2.50
PF00561	Abhydrolase_1	2.50
PF08546	ApbA_C	1.67
PF13495	Phage_int_SAM_4	1.67
PF00496	SBP_bac_5	0.83
PF04392	ABC_sub_bind	0.83
PF13379	NMT1_2	0.83
PF01035	DNA_binding_1	0.83
PF07476	MAAL_C	0.83
PF06742	DUF1214	0.83
PF12705	PDDEXK_1	0.83
PF03050	DDE_Tnp_IS66	0.83
PF02371	Transposase_20	0.83
PF08388	GIIM	0.83
PF00872	Transposase_mut	0.83
PF00005	ABC_tran	0.83
PF07929	PRiA4_ORF3	0.83
PF00885	DMRL_synthase	0.83
PF13185	GAF_2	0.83
PF00239	Resolvase	0.83
PF13436	Gly-zipper_OmpA	0.83
PF13738	Pyr_redox_3	0.83
PF02738	MoCoBD_1	0.83
PF01425	Amidase	0.83
PF00536	SAM_1	0.83
PF13737	DDE_Tnp_1_5	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.50
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.50
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.50
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	1.67
COG0054	6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain)	Coenzyme transport and metabolism [H]	0.83
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.83
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.83
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.83
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.83
COG3799	Methylaspartate ammonia-lyase	Amino acid transport and metabolism [E]	0.83
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.83
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.83 %
Unclassified	root	N/A	49.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.83 %
Unclassified	root	N/A	49.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.83 %
Unclassified	root	N/A	49.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.67 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.50 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.50 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.67 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.67 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.83 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.50 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.83 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.83 %
unclassified Methylocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.17 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.50 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	0.83 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.83 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.83 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004091\|Ga0062387_100728469	Not Available	730	Open in IMG/M
3300005171\|Ga0066677_10270485	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300005184\|Ga0066671_10991931	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	529	Open in IMG/M
3300005187\|Ga0066675_10241414	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300005332\|Ga0066388_102178720	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300005332\|Ga0066388_106009122	Not Available	613	Open in IMG/M
3300005436\|Ga0070713_100661201	All Organisms → cellular organisms → Bacteria → Proteobacteria	996	Open in IMG/M
3300005471\|Ga0070698_101562152	Not Available	612	Open in IMG/M
3300005554\|Ga0066661_10757254	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300005569\|Ga0066705_10638483	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300005764\|Ga0066903_101496168	Not Available	1274	Open in IMG/M
3300005921\|Ga0070766_10875253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	614	Open in IMG/M
3300006800\|Ga0066660_11092921	Not Available	633	Open in IMG/M
3300006852\|Ga0075433_10730365	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300009089\|Ga0099828_11606650	Not Available	572	Open in IMG/M
3300009090\|Ga0099827_11820192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	531	Open in IMG/M
3300009137\|Ga0066709_104294362	Not Available	520	Open in IMG/M
3300009792\|Ga0126374_11230871	Not Available	601	Open in IMG/M
3300009826\|Ga0123355_11446764	Not Available	675	Open in IMG/M
3300010048\|Ga0126373_10546798	Not Available	1205	Open in IMG/M
3300010359\|Ga0126376_10943599	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300010359\|Ga0126376_11150697	Not Available	787	Open in IMG/M
3300010361\|Ga0126378_10017705	All Organisms → cellular organisms → Bacteria → Proteobacteria	6058	Open in IMG/M
3300010361\|Ga0126378_10274129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1786	Open in IMG/M
3300010361\|Ga0126378_10738196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1095	Open in IMG/M
3300010366\|Ga0126379_10754811	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300010376\|Ga0126381_100710928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1438	Open in IMG/M
3300011270\|Ga0137391_11556326	Not Available	505	Open in IMG/M
3300012203\|Ga0137399_10361612	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300012203\|Ga0137399_10551879	Not Available	968	Open in IMG/M
3300012357\|Ga0137384_10633311	Not Available	871	Open in IMG/M
3300012359\|Ga0137385_10963033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	704	Open in IMG/M
3300012948\|Ga0126375_10394584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	998	Open in IMG/M
3300012971\|Ga0126369_13712799	Not Available	500	Open in IMG/M
3300016319\|Ga0182033_10342150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1248	Open in IMG/M
3300016319\|Ga0182033_10636089	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300016319\|Ga0182033_12013119	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300016357\|Ga0182032_11635056	Not Available	561	Open in IMG/M
3300016371\|Ga0182034_10588186	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300016387\|Ga0182040_10329761	Not Available	1177	Open in IMG/M
3300016387\|Ga0182040_10610324	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300016387\|Ga0182040_10916815	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300016404\|Ga0182037_10098142	All Organisms → cellular organisms → Bacteria	2102	Open in IMG/M
3300016422\|Ga0182039_11772880	Not Available	565	Open in IMG/M
3300016445\|Ga0182038_11559070	Not Available	594	Open in IMG/M
3300017959\|Ga0187779_10505752	Not Available	800	Open in IMG/M
3300018468\|Ga0066662_10116950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1935	Open in IMG/M
3300018482\|Ga0066669_10844362	Not Available	815	Open in IMG/M
3300020580\|Ga0210403_10080845	All Organisms → cellular organisms → Bacteria	2619	Open in IMG/M
3300020580\|Ga0210403_10132741	All Organisms → cellular organisms → Bacteria → Proteobacteria	2030	Open in IMG/M
3300021086\|Ga0179596_10501921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300021178\|Ga0210408_11400486	Not Available	527	Open in IMG/M
3300021405\|Ga0210387_11482814	Not Available	581	Open in IMG/M
3300021432\|Ga0210384_11283730	Not Available	637	Open in IMG/M
3300026542\|Ga0209805_1135408	Not Available	1150	Open in IMG/M
3300027783\|Ga0209448_10185874	Not Available	691	Open in IMG/M
3300030763\|Ga0265763_1042549	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300030945\|Ga0075373_11561648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	888	Open in IMG/M
3300031057\|Ga0170834_100208226	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300031231\|Ga0170824_126411408	All Organisms → cellular organisms → Bacteria → Proteobacteria	940	Open in IMG/M
3300031446\|Ga0170820_12726756	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300031474\|Ga0170818_104421104	Not Available	762	Open in IMG/M
3300031546\|Ga0318538_10623325	Not Available	585	Open in IMG/M
3300031561\|Ga0318528_10392463	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300031573\|Ga0310915_10283743	Not Available	1168	Open in IMG/M
3300031573\|Ga0310915_10903012	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300031668\|Ga0318542_10167409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300031668\|Ga0318542_10257618	Not Available	888	Open in IMG/M
3300031681\|Ga0318572_10162612	Not Available	1294	Open in IMG/M
3300031682\|Ga0318560_10366586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	779	Open in IMG/M
3300031718\|Ga0307474_10437465	All Organisms → cellular organisms → Bacteria → Proteobacteria	1021	Open in IMG/M
3300031719\|Ga0306917_10685492	Not Available	805	Open in IMG/M
3300031719\|Ga0306917_11550704	Not Available	509	Open in IMG/M
3300031724\|Ga0318500_10120847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1210	Open in IMG/M
3300031747\|Ga0318502_10344327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	881	Open in IMG/M
3300031748\|Ga0318492_10382893	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300031748\|Ga0318492_10629533	Not Available	573	Open in IMG/M
3300031751\|Ga0318494_10539269	Not Available	681	Open in IMG/M
3300031751\|Ga0318494_10719339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300031753\|Ga0307477_10049468	All Organisms → cellular organisms → Bacteria	2890	Open in IMG/M
3300031753\|Ga0307477_10121083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1824	Open in IMG/M
3300031754\|Ga0307475_10090159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2377	Open in IMG/M
3300031763\|Ga0318537_10117542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	987	Open in IMG/M
3300031768\|Ga0318509_10168813	Not Available	1211	Open in IMG/M
3300031770\|Ga0318521_10173873	Not Available	1233	Open in IMG/M
3300031777\|Ga0318543_10249006	Not Available	792	Open in IMG/M
3300031792\|Ga0318529_10285571	Not Available	768	Open in IMG/M
3300031793\|Ga0318548_10039641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2108	Open in IMG/M
3300031793\|Ga0318548_10135306	Not Available	1196	Open in IMG/M
3300031794\|Ga0318503_10043825	Not Available	1349	Open in IMG/M
3300031796\|Ga0318576_10096665	Not Available	1343	Open in IMG/M
3300031797\|Ga0318550_10596117	Not Available	531	Open in IMG/M
3300031798\|Ga0318523_10378541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	704	Open in IMG/M
3300031821\|Ga0318567_10664618	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300031823\|Ga0307478_10797280	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031846\|Ga0318512_10467247	Not Available	638	Open in IMG/M
3300031860\|Ga0318495_10538341	Not Available	508	Open in IMG/M
3300031896\|Ga0318551_10374153	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	808	Open in IMG/M
3300031910\|Ga0306923_10431699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1496	Open in IMG/M
3300031941\|Ga0310912_11071776	Not Available	616	Open in IMG/M
3300031942\|Ga0310916_10316041	Not Available	1324	Open in IMG/M
3300031945\|Ga0310913_10224504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1316	Open in IMG/M
3300031945\|Ga0310913_10958454	Not Available	600	Open in IMG/M
3300031947\|Ga0310909_10722641	Not Available	826	Open in IMG/M
3300031954\|Ga0306926_10585967	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1363	Open in IMG/M
3300031954\|Ga0306926_11869164	Not Available	679	Open in IMG/M
3300032025\|Ga0318507_10487988	Not Available	536	Open in IMG/M
3300032041\|Ga0318549_10508041	Not Available	542	Open in IMG/M
3300032054\|Ga0318570_10066898	Not Available	1522	Open in IMG/M
3300032059\|Ga0318533_10693968	Not Available	747	Open in IMG/M
3300032059\|Ga0318533_11168486	Not Available	563	Open in IMG/M
3300032060\|Ga0318505_10519882	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300032066\|Ga0318514_10733695	Not Available	525	Open in IMG/M
3300032090\|Ga0318518_10709552	Not Available	511	Open in IMG/M
3300032261\|Ga0306920_101485143	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300032261\|Ga0306920_102930752	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300032397\|Ga0315287_12524000	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300032955\|Ga0335076_10181837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2010	Open in IMG/M
3300033289\|Ga0310914_11105789	Not Available	694	Open in IMG/M
3300033289\|Ga0310914_11632261	Not Available	548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.83%
Aquatic	Environmental → Aquatic	2.50%
Arthropoda	Host-Associated → Arthropoda	0.83%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.83%
Freshwater	Environmental → Aquatic → Freshwater	2.50%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.33%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062387_1007284691	3300004091	Bog Forest Soil	MHFHANYVSTSVFGAGDYYQAMFEAEQDTDDPDSPYLLIQR
Ga0066677_102704852	3300005171	Soil	MHFHANYVSTSVSGDGDYYQAMFEAEQDTDDLDSPYLLIQRQFEDPDDNWVLHRNA*
Ga0066671_109919312	3300005184	Soil	MHFHANYVSTSVFGDGDYYQAMFQAEQDTDDPDSPYLLIQRQFEDPD
Ga0066675_102414141	3300005187	Soil	MHFHANYVSTSVFGDGDYYQATFEAERDTDDPGSPYLLIQRQFEDPDDH
Ga0066388_1021787201	3300005332	Tropical Forest Soil	MRFHANYVSTSVSGDYDQAMFEAEPDSDDVDSPYLLIQRQFED
Ga0066388_1060091221	3300005332	Tropical Forest Soil	MLARDTRIMRFHANYVSTSVSGDYYQAMFEYEKDADDLLSPY
Ga0070713_1006612013	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MHFHANYVSISVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFENPDDNWC
Ga0070698_1015621522	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MHFHANYVSTSVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFED
Ga0066661_107572542	3300005554	Soil	MQFHANYVSTSVFGDGDYYQATFEAEQDTDDPGSPYLLIQRQFEDPDD
Ga0066705_106384831	3300005569	Soil	MHFHANYVSTSVSGDGDYYQAMFEAEQDTDDLDSPYLLIQRQFEDPDD
Ga0066903_1014961681	3300005764	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDADDPDSPY
Ga0070766_108752531	3300005921	Soil	MARDTRTMRFQANYISASVSGDYCQAMFAASDTDESDSPCLLIQRQFET
Ga0066660_110929211	3300006800	Soil	MCFHANYVSTSASGDGDYYQAMFEAEQDAADLDSPSVLTQSLCEDPDDN*
Ga0075433_107303652	3300006852	Populus Rhizosphere	MNFHANYVSTSVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFE
Ga0099828_116066501	3300009089	Vadose Zone Soil	MRTMLFHANYVATSVAGDYYQAMFAEEDTDDPDRAYL
Ga0099827_118201922	3300009090	Vadose Zone Soil	MRFQANYVSISVSGDYYQAMFEAEEDATDPDSPYLLIQR
Ga0066709_1042943621	3300009137	Grasslands Soil	MRTMLFHANYVATSVAGDYYQTKFAEEDTDHPDRAYLIIQRPFEDPE
Ga0126374_112308711	3300009792	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQATFQAEQDTDDADSPYLLIQ
Ga0123355_114467641	3300009826	Termite Gut	MQFHAECVSVSVAADYYQILFEAEEDSDDLDSPYL
Ga0126373_105467982	3300010048	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQALFEAEQDTDDPDSP
Ga0126376_109435991	3300010359	Tropical Forest Soil	MHFHANYVSTSAFGDGDYYQATFEADQDSDDRDSPYLLIQRQFEDPD
Ga0126376_111506973	3300010359	Tropical Forest Soil	HANYVSTSVFGDGDYYQATFEAEQDAVDPGSPYL*
Ga0126378_100177054	3300010361	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDADSPYLLIQRQFEDPDDNWCYWASF*
Ga0126378_102741291	3300010361	Tropical Forest Soil	MRFHANYVSTSVSGDYDQAMFEAEPDSDDVDSPYLLIQRQFEDPDD
Ga0126378_107381963	3300010361	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQATFQAKQDTDDPDSPY
Ga0126379_107548111	3300010366	Tropical Forest Soil	MRFHANYVSTSVAGECYHAMFEAEQDSDDVDSPYLLIQRQFEDPDDDWC
Ga0126381_1007109281	3300010376	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFED
Ga0137391_115563261	3300011270	Vadose Zone Soil	MDFHANYVSTSVFGDGDYYQAEQDTDDPDSPYLLIQRQFEDPDDNW
Ga0137399_103616121	3300012203	Vadose Zone Soil	MHFHANYVSTSVFGDGDYYQAMFQAEQDTDDPDSPYLLIQRQFEDPDDN
Ga0137399_105518792	3300012203	Vadose Zone Soil	MHFHANYVSTSVFGDGDYYQATFQAEQDTDDPDSPYLLI
Ga0137384_106333111	3300012357	Vadose Zone Soil	MHFHSNYVSTSVFGDGYYYQATFQAEQDTDDTDSPYLLIQRQF
Ga0137385_109630332	3300012359	Vadose Zone Soil	MHFHANYVSTSVFGDGDYYQATFQAEQDTDHPDSPYLLIQRQFEDPDDN
Ga0126375_103945841	3300012948	Tropical Forest Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDRDSPYLLIQAIRRSR*
Ga0126369_137127991	3300012971	Tropical Forest Soil	MLSTSFFGDGDHYRDTFEAEEDTDDPDSIYLLIQREFEDPDDY*
Ga0182033_103421501	3300016319	Soil	MHLHANYVSTSVFGDGDYYQATFEAEQDTDDPDSAYLTIQRQFEDPDDHRC
Ga0182033_106360893	3300016319	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPYLSIQR
Ga0182033_120131191	3300016319	Soil	MRFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLL
Ga0182032_116350561	3300016357	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDPD
Ga0182034_105881861	3300016371	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDPDDNWC
Ga0182040_103297611	3300016387	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPYLS
Ga0182040_106103243	3300016387	Soil	MHFHANYVSTSVFGDGDYYQATFEAERDTDEPDSPYLLI
Ga0182040_109168151	3300016387	Soil	MDFHANYVSTSVFGDGDYYQAIFESEQDTDDPDSPYLLIQRQFEDPDDNW
Ga0182037_100981421	3300016404	Soil	MHFHANYVSTSVFGDGDYYQAMFEAEQDSDDLDSPYLLIQRQ
Ga0182039_117728802	3300016422	Soil	MHLHANCVSTSVFGDGDYYQATFEAEQDAVDPGSPYLLIQRQ
Ga0182038_115590702	3300016445	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDADSP
Ga0187779_105057521	3300017959	Tropical Peatland	MHFHANYVSTSVFGDGSYYQAMFQAEQDADDFDSPYLLIQRQFEDQDDNLC
Ga0066662_101169501	3300018468	Grasslands Soil	MHFHANYVSTSVFGDGDYYQAMFQAEPDTDDAGSPYLLIQRQFED
Ga0066669_108443621	3300018482	Grasslands Soil	MHFHANYVSTSVFGDGDYYQAMFQAEEDTDDPDSP
Ga0210403_100808451	3300020580	Soil	MHFHANYVSISVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDPD
Ga0210403_101327411	3300020580	Soil	MHFHANYVSISVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFEDPDD
Ga0179596_105019212	3300021086	Vadose Zone Soil	MHFHANYVSTSVFGDGDYYQATFQAEQDTDDPDSPYLLIQR
Ga0210408_114004861	3300021178	Soil	MHFHANYVSTSVFGDGDYYQAMFQAEQDTDDPDSPYLLIQR
Ga0210387_114828141	3300021405	Soil	MHFHANYVSTSVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFE
Ga0210384_112837301	3300021432	Soil	MHFHANYVSTSVFGDGDYYQATFEVEQDTDDPDSPYL
Ga0209805_11354082	3300026542	Soil	MHFHANYVSTSVFGDGDYYQAMFQAEPDTDDAGSPYLLIQRQF
Ga0209448_101858741	3300027783	Bog Forest Soil	MHFHANYVSTSVFGAGDYYQAMFEAEQDTDDPDSPYLLIQRQFED
Ga0265763_10425492	3300030763	Soil	MHIHANYVSISVFGDGDYYQAMFQAEQDTDDPDSPYLLIQRQFEDPDDNSCYRNA
Ga0075373_115616483	3300030945	Soil	MHFHANYVSISVFGDGDYYQATFQAEQDTDDPDSPYLLIQ
Ga0170834_1002082261	3300031057	Forest Soil	MNFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDPDDNR
Ga0170824_1264114082	3300031231	Forest Soil	MHFHANYVSTSVFGDGDYYQVTFQAEQDTDDPDSPYLLIQRQFEDPDDNWC
Ga0170820_127267561	3300031446	Forest Soil	MHFHANYVSISVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFEDPDDNRC
Ga0170818_1044211041	3300031474	Forest Soil	MNFHANYVSTSVFGDGDYYQATFQAEQDTDHPDSPYLL
Ga0318538_106233251	3300031546	Soil	MDFRANYVSTSVAGDYYQAMFEAEQDADDPDSAYLLIQRQFE
Ga0318528_103924631	3300031561	Soil	MRFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYL
Ga0310915_102837432	3300031573	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDADSPYLLI
Ga0310915_109030121	3300031573	Soil	MNFHANYVSTSVFGDGDYYQATFEAEQDTDDPDALIS
Ga0318542_101674091	3300031668	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSP
Ga0318542_102576181	3300031668	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDADSPYLLIQRQFEDPDDNWCY
Ga0318572_101626121	3300031681	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPY
Ga0318560_103665861	3300031682	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDPDALIS
Ga0307474_104374653	3300031718	Hardwood Forest Soil	MRFRANHISTSVAGDYYQAMFAADEDTDDPDSPYLLLQRQF
Ga0306917_106854921	3300031719	Soil	MHFHANYVSTSVFGDGDYYQATFEAERDTDEPDSPYL
Ga0306917_115507042	3300031719	Soil	MHFHANHVSTSAFAGDYYQAMFEADEEADDPHSPYLLIQRQFEDPD
Ga0318500_101208472	3300031724	Soil	MHFHANYVSTSVFGDGDYYQAMFEAEQDTDDPDSPYLLIQRQFEDPDDN
Ga0318502_103443271	3300031747	Soil	MHFHANYVSTSVSGDYYQAMFEAEQDSDDLDSPYLL
Ga0318492_103828931	3300031748	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDPDDNCATSKH
Ga0318492_106295331	3300031748	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPYLSIQRQFEDQSDDLCYIEAHDE
Ga0318494_105392691	3300031751	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPY
Ga0318494_107193391	3300031751	Soil	MHFHANYVSTSAFGDGDYYQATFEAEQDSDDRDSPY
Ga0307477_100494681	3300031753	Hardwood Forest Soil	MHFHANYVSTSVFGDGDYYQAMFEAEQDTDDPDSLIC
Ga0307477_101210831	3300031753	Hardwood Forest Soil	MHFHANYVSTSVFGDGEYYQATFQAEQETDDPDSPYLLIQRQFEDPDAIGATSKCM
Ga0307475_100901591	3300031754	Hardwood Forest Soil	MHFHANYVSASVFGDGDYYQATFQAEQDTDDPDSPYLLIQRQFEDPDDNWC
Ga0318537_101175421	3300031763	Soil	MDFHANYVSTSVFGDGDCYQATFEAEQDTDDPDSPY
Ga0318509_101688132	3300031768	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDADSPYLLIQR
Ga0318521_101738731	3300031770	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDADSPD
Ga0318543_102490063	3300031777	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPYLSIQRQFEDQSDDLCYIEAHD
Ga0318529_102855711	3300031792	Soil	MHFHANSVSTSVFGDGNYYQAAFEAEEDTDDPDSPYLLIQ
Ga0318548_100396415	3300031793	Soil	TSVFGDGDYYQATFEAEQDAVDPGSPYLLIQRQFEDPDDDRC
Ga0318548_101353061	3300031793	Soil	MHLHANYVSTSVFGDGDYYQATFEAEQDAVDPGSPYLLIQRQFEDPDDDR
Ga0318503_100438252	3300031794	Soil	MHLHANYVSTSVFGDGDYYQATFEAEQDAVDPGSPYLLIQRQFEDPDDD
Ga0318576_100966651	3300031796	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPYLSIQRQFEDQSDDLCYIEAHDENN
Ga0318550_105961171	3300031797	Soil	MDFRANYVSTSVAGDYYQAMFEAEQDADDPDSAYL
Ga0318523_103785412	3300031798	Soil	MHFHANYVSTSVFGDGDYYQATFEAERDTDEPDSPYLLIQRQFEDPDDN
Ga0318567_106646181	3300031821	Soil	MHFHANYVSTSVFGDGDYYQATFEAERDTDEPDSPY
Ga0307478_107972802	3300031823	Hardwood Forest Soil	MQFRADYVSISVSGDHYLAMFAAEKDADDPHSPYLLIQRPFEIPDG
Ga0318512_104672472	3300031846	Soil	LRGSTHFHANYVSTSVFGDGDYYQATFQAEQDADDAGSPY
Ga0318495_105383411	3300031860	Soil	MHFHTNYVSTSVFGDGDYYQATFEAEQDTDDADSPYLLIQRQFEDP
Ga0318551_103741531	3300031896	Soil	ELRGGMHFHANYVSTSVFGDGDYYQATFEAERDTDEPDSPYLLIQRQFEDPDDN
Ga0306923_104316992	3300031910	Soil	MHFHANYVSTSVFGDGDYYQATFEAERDTDEPDSPYLLIQRQLVLYRNT
Ga0310912_110717761	3300031941	Soil	MNFHANYVSTSVFGDGDYYQATFEAEQDTDDPDALI
Ga0310916_103160414	3300031942	Soil	MHFYANYVSTSVFGDGDYYQAMFEAEQDADDPHSPYLSIQRKFEDQSDDLCY
Ga0310913_102245041	3300031945	Soil	MHFHANYVSTSVSGDYYQAMFEAEQDSDDLDSPYLLIQRQ
Ga0310913_109584542	3300031945	Soil	MHFHANYVSTSVSGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDP
Ga0310909_107226412	3300031947	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDNPDSPYLLIQR
Ga0306926_105859671	3300031954	Soil	SMHLHANYVSTSVFGDGDYYQATFEAEQDAVDPGSPYLLIQRQFEDPDDDRC
Ga0306926_118691641	3300031954	Soil	RGSMHFHADYVSTSVFGDGDYYQATFQAKQDTELP
Ga0318507_104879881	3300032025	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDDPDSPYLLIQRQFEDP
Ga0318549_105080411	3300032041	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDNPDSPY
Ga0318570_100668981	3300032054	Soil	MHLHANYVSTSVFGDGDYYQATFEAEQDAVDPGSPYLLIQRQFEDPDDDRCY
Ga0318533_106939682	3300032059	Soil	MRFHANYVSTSVSGDYYQAVFKAERNSDDVDGPYL
Ga0318533_111684862	3300032059	Soil	MHFYAKYVSASVFGDGDYNQATFEAEQDTDDPGSPYL
Ga0318505_105198821	3300032060	Soil	MHFHANYVSTSVFGDGDYYQAMFEAEQDSNDLDSPYL
Ga0318514_107336952	3300032066	Soil	MDFRANYVSTSVAGDYYQAMFEAEQDADDPDSAYLLI
Ga0318518_107095521	3300032090	Soil	MDFHANYVSTSVFGDGDCYQATFEAEQDTDDPDSPYLLI
Ga0306920_1014851432	3300032261	Soil	MHFHANYVSTSVFGDGDYYQATFEAEQDTDNPDSPYLLIQ
Ga0306920_1029307522	3300032261	Soil	MHFHANSVSTSVFGDGDYYQTTFEAEQDTDDADSPYLSIQ
Ga0315287_125240002	3300032397	Sediment	MRFHANHVSTSISGDYYQAMIEASEDSNDPDSPYLIIQRQFEM
Ga0335076_101818375	3300032955	Soil	GETTRFHANYVSTCVSGDYYQAMFAAEQDSDDVDGPHLLIQRQFEDPDDDWC
Ga0310914_111057891	3300033289	Soil	MRFHANYVSTSVSGDYYQAVFKAERNSDDVDGPYLLIQR
Ga0310914_116322611	3300033289	Soil	MQFHANHVSVSTFADDYFQVKFEAEEDAEDSDSPYLLIQRQFEDPEDEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073294

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences