Metagenome / Metatranscriptome Family F073625

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073625
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	68 residues
Representative Sequence	MLTCLICGGDMQQDTAEVTELLRERGCISTTVDSGGREFQFADGEQLEVGGMCNACDEKEIRKFLELR
Number of Associated Samples	91
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.50 %
% of genes near scaffold ends (potentially truncated)	23.33 %
% of genes from short scaffolds (< 2000 bps)	79.17 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.96% β-sheet: 19.79% Coil/Unstructured: 56.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.3.1.1: beta-Lactamase/D-ala carboxypeptidase	d1l7ua_	1l7u	0.56368
c.51.6.1: NLBH-like	d2i9ia1	2i9i	0.56053
c.67.1.0: automated matches	d4dgta_	4dgt	0.55229
d.204.1.0: automated matches	d3tqma_	3tqm	0.55174
d.315.1.1: TRCF domain	d2eyqa6	2eyq	0.55113

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF04828	GFA	5.00
PF00012	HSP70	4.17
PF01804	Penicil_amidase	2.50
PF03466	LysR_substrate	2.50
PF13793	Pribosyltran_N	1.67
PF07804	HipA_C	1.67
PF07690	MFS_1	1.67
PF12167	Arm-DNA-bind_2	1.67
PF00126	HTH_1	1.67
PF12833	HTH_18	1.67
PF13609	Porin_4	0.83
PF08843	AbiEii	0.83
PF04041	Glyco_hydro_130	0.83
PF05981	CreA	0.83
PF00196	GerE	0.83
PF13857	Ank_5	0.83
PF01292	Ni_hydr_CYTB	0.83
PF01979	Amidohydro_1	0.83
PF00583	Acetyltransf_1	0.83
PF13412	HTH_24	0.83
PF08220	HTH_DeoR	0.83
PF12680	SnoaL_2	0.83
PF12323	HTH_OrfB_IS605	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF00903	Glyoxalase	0.83
PF00665	rve	0.83
PF00271	Helicase_C	0.83
PF02954	HTH_8	0.83
PF08327	AHSA1	0.83
PF16220	DUF4880	0.83
PF05175	MTS	0.83
PF00403	HMA	0.83
PF04616	Glyco_hydro_43	0.83
PF03704	BTAD	0.83
PF07638	Sigma70_ECF	0.83
PF00069	Pkinase	0.83
PF01810	LysE	0.83
PF00881	Nitroreductase	0.83
PF16694	Cytochrome_P460	0.83
PF02576	RimP_N	0.83
PF12281	NTP_transf_8	0.83
PF01797	Y1_Tnp	0.83
PF00950	ABC-3	0.83
PF00561	Abhydrolase_1	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	5.00
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	4.17
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.33
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.50
COG3550	Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module	Signal transduction mechanisms [T]	1.67
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	0.83
COG0779	Ribosome maturation factor RimP	Translation, ribosomal structure and biogenesis [J]	0.83
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.83
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.83
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.83
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.83
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.83
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.83
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.83
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.83
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.83
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.83
COG3038	Cytochrome b561	Energy production and conversion [C]	0.83
COG3045	Periplasmic catabolite regulation protein CreA (function unknown)	Signal transduction mechanisms [T]	0.83
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.83
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.83
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.83
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.83
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.83
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.83
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.00 %
Unclassified	root	N/A	27.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.67 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	15.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.00 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	3.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.33 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.67 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.83 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	6.67 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.17 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.33 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.67 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.83 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.83 %
Holophagales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.67 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	5.00 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.33 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.67 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.83 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.83 %
Holophagaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae	0.83 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.83 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.83 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.83 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.67 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	5.00 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.33 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.67 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.83 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Acidovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	0.83 %
Geothrix	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix	0.83 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.83 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.67 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.33 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.67 %
Steroidobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	1.67 %
unclassified Geothrix	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix	0.83 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.83 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %
Acidovorax avenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax avenae	0.83 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.83 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	6.67 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.33 %
Rhizobium miluonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium miluonense	1.67 %
Steroidobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	1.67 %
Nocardia stercoris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia stercoris	0.83 %
Geothrix sp. SG184	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix → Geothrix sp. SG184	0.83 %
Streptomyces paradoxus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paradoxus	0.83 %
Acidovorax avenae subsp. avenae	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax avenae → Acidovorax avenae subsp. avenae	0.83 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.83 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.83 %
Burkholderiales bacterium PBB5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	0.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100928006	Not Available	753	Open in IMG/M
3300004092\|Ga0062389_102169502	Not Available	729	Open in IMG/M
3300004635\|Ga0062388_100163013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1709	Open in IMG/M
3300005260\|Ga0074072_1000084	All Organisms → cellular organisms → Bacteria → Proteobacteria	55114	Open in IMG/M
3300005260\|Ga0074072_1132544	Not Available	617	Open in IMG/M
3300005329\|Ga0070683_100479266	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300005367\|Ga0070667_100016855	All Organisms → cellular organisms → Bacteria → Proteobacteria	6046	Open in IMG/M
3300005434\|Ga0070709_10719976	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300005535\|Ga0070684_100209570	All Organisms → cellular organisms → Bacteria → Proteobacteria	1776	Open in IMG/M
3300005538\|Ga0070731_10200546	Not Available	1324	Open in IMG/M
3300005538\|Ga0070731_10643254	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005548\|Ga0070665_100001780	All Organisms → cellular organisms → Bacteria	24544	Open in IMG/M
3300005548\|Ga0070665_100459120	Not Available	1284	Open in IMG/M
3300005563\|Ga0068855_101609327	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300005614\|Ga0068856_101749230	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005616\|Ga0068852_101490546	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300005617\|Ga0068859_102612982	Not Available	555	Open in IMG/M
3300005712\|Ga0070764_10013656	All Organisms → cellular organisms → Bacteria → Proteobacteria	4004	Open in IMG/M
3300006358\|Ga0068871_100228026	All Organisms → cellular organisms → Bacteria → Proteobacteria	1616	Open in IMG/M
3300006755\|Ga0079222_11842267	Not Available	587	Open in IMG/M
3300009089\|Ga0099828_11962502	Not Available	513	Open in IMG/M
3300009093\|Ga0105240_10489242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1370	Open in IMG/M
3300009093\|Ga0105240_10527180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium miluonense	1310	Open in IMG/M
3300009093\|Ga0105240_10858694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	979	Open in IMG/M
3300009093\|Ga0105240_11500935	Not Available	707	Open in IMG/M
3300009174\|Ga0105241_10636384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	967	Open in IMG/M
3300009545\|Ga0105237_10061257	All Organisms → cellular organisms → Bacteria → Proteobacteria	3763	Open in IMG/M
3300009545\|Ga0105237_10325383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1541	Open in IMG/M
3300009545\|Ga0105237_12077508	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	577	Open in IMG/M
3300009551\|Ga0105238_11597072	Not Available	682	Open in IMG/M
3300009553\|Ga0105249_10167440	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300010371\|Ga0134125_11747445	Not Available	677	Open in IMG/M
3300010373\|Ga0134128_11390614	Not Available	773	Open in IMG/M
3300010373\|Ga0134128_12142705	Not Available	616	Open in IMG/M
3300010379\|Ga0136449_100451652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2254	Open in IMG/M
3300012202\|Ga0137363_11332588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	607	Open in IMG/M
3300012210\|Ga0137378_10842851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	829	Open in IMG/M
3300012351\|Ga0137386_10382536	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300012359\|Ga0137385_10076020	All Organisms → cellular organisms → Bacteria → Proteobacteria	2985	Open in IMG/M
3300012359\|Ga0137385_10131817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2204	Open in IMG/M
3300012359\|Ga0137385_10556144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium PBB5	967	Open in IMG/M
3300012925\|Ga0137419_10952405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	709	Open in IMG/M
3300012927\|Ga0137416_11181274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	688	Open in IMG/M
3300012929\|Ga0137404_10376881	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300012982\|Ga0168317_1003728	All Organisms → cellular organisms → Bacteria	6413	Open in IMG/M
3300014501\|Ga0182024_10896343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax avenae → Acidovorax avenae subsp. avenae	1069	Open in IMG/M
3300014501\|Ga0182024_12802707	Not Available	519	Open in IMG/M
3300014968\|Ga0157379_10040791	All Organisms → cellular organisms → Bacteria → Proteobacteria	4144	Open in IMG/M
3300014968\|Ga0157379_10245653	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300015241\|Ga0137418_10705892	Not Available	772	Open in IMG/M
3300019242\|Ga0181502_1204664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paradoxus	630	Open in IMG/M
3300019377\|Ga0190264_11954985	Not Available	535	Open in IMG/M
3300020579\|Ga0210407_11320866	Not Available	538	Open in IMG/M
3300020580\|Ga0210403_10045646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3503	Open in IMG/M
3300020583\|Ga0210401_11180961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	624	Open in IMG/M
3300021086\|Ga0179596_10021188	All Organisms → cellular organisms → Bacteria	2360	Open in IMG/M
3300021168\|Ga0210406_10016506	All Organisms → cellular organisms → Bacteria → Proteobacteria	6999	Open in IMG/M
3300021180\|Ga0210396_11525995	Not Available	548	Open in IMG/M
3300021181\|Ga0210388_10002873	All Organisms → cellular organisms → Bacteria → Proteobacteria	13449	Open in IMG/M
3300021402\|Ga0210385_10720424	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300021407\|Ga0210383_11783291	Not Available	502	Open in IMG/M
3300021433\|Ga0210391_10215119	All Organisms → cellular organisms → Bacteria → Proteobacteria	1511	Open in IMG/M
3300021477\|Ga0210398_11569101	Not Available	511	Open in IMG/M
3300022897\|Ga0247764_1095792	All Organisms → cellular organisms → Bacteria → Proteobacteria	908	Open in IMG/M
3300022917\|Ga0247777_1002450	All Organisms → cellular organisms → Bacteria → Proteobacteria	6416	Open in IMG/M
3300022917\|Ga0247777_1310235	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	502	Open in IMG/M
3300023268\|Ga0247765_1093984	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	631	Open in IMG/M
3300024288\|Ga0179589_10438793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	601	Open in IMG/M
3300025900\|Ga0207710_10126179	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300025913\|Ga0207695_10186122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1995	Open in IMG/M
3300025913\|Ga0207695_10527286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium miluonense	1063	Open in IMG/M
3300025913\|Ga0207695_10579571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1003	Open in IMG/M
3300025914\|Ga0207671_10269564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	1341	Open in IMG/M
3300025916\|Ga0207663_11421345	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300025920\|Ga0207649_11201896	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300025939\|Ga0207665_10597713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	861	Open in IMG/M
3300025944\|Ga0207661_10361203	All Organisms → cellular organisms → Bacteria → Proteobacteria	1312	Open in IMG/M
3300025961\|Ga0207712_10047656	All Organisms → cellular organisms → Bacteria	2976	Open in IMG/M
3300026078\|Ga0207702_10692369	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300026142\|Ga0207698_11469225	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300027603\|Ga0209331_1099032	Not Available	713	Open in IMG/M
3300027869\|Ga0209579_10365480	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300027908\|Ga0209006_10622083	Not Available	890	Open in IMG/M
3300028536\|Ga0137415_10266539	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300028536\|Ga0137415_10750666	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300028573\|Ga0265334_10029223	All Organisms → cellular organisms → Bacteria	2211	Open in IMG/M
3300029636\|Ga0222749_10472873	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300029951\|Ga0311371_10322060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	2162	Open in IMG/M
3300029951\|Ga0311371_11180153	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300030521\|Ga0307511_10000270	All Organisms → cellular organisms → Bacteria → Proteobacteria	54049	Open in IMG/M
3300030524\|Ga0311357_10925820	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300030916\|Ga0075386_12014381	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300030991\|Ga0073994_11747762	Not Available	592	Open in IMG/M
3300031184\|Ga0307499_10191012	Not Available	625	Open in IMG/M
3300031198\|Ga0307500_10107380	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300031198\|Ga0307500_10238247	Not Available	557	Open in IMG/M
3300031198\|Ga0307500_10287307	Not Available	518	Open in IMG/M
3300031231\|Ga0170824_109957318	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300031231\|Ga0170824_123875772	Not Available	622	Open in IMG/M
3300031232\|Ga0302323_101990942	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix → Geothrix sp. SG184	660	Open in IMG/M
3300031616\|Ga0307508_10364431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia stercoris	1036	Open in IMG/M
3300031616\|Ga0307508_10520064	Not Available	786	Open in IMG/M
3300031708\|Ga0310686_101009572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	819	Open in IMG/M
3300031708\|Ga0310686_103699953	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300031708\|Ga0310686_104493125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	669	Open in IMG/M
3300031708\|Ga0310686_111334938	All Organisms → cellular organisms → Bacteria	3776	Open in IMG/M
3300031708\|Ga0310686_113697028	All Organisms → cellular organisms → Bacteria → Proteobacteria	3278	Open in IMG/M
3300031708\|Ga0310686_115657851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7136	Open in IMG/M
3300031715\|Ga0307476_10094325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2106	Open in IMG/M
3300031718\|Ga0307474_10780070	Not Available	756	Open in IMG/M
3300031962\|Ga0307479_10074073	All Organisms → cellular organisms → Bacteria	3293	Open in IMG/M
3300031962\|Ga0307479_10749196	Not Available	954	Open in IMG/M
3300032002\|Ga0307416_101478417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	785	Open in IMG/M
3300032074\|Ga0308173_11211516	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	706	Open in IMG/M
3300032160\|Ga0311301_12409473	Not Available	593	Open in IMG/M
3300032174\|Ga0307470_10915140	Not Available	690	Open in IMG/M
3300033475\|Ga0310811_10575257	All Organisms → cellular organisms → Bacteria → Proteobacteria	1144	Open in IMG/M
3300033489\|Ga0299912_10331051	Not Available	1268	Open in IMG/M
3300033489\|Ga0299912_10658151	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300034268\|Ga0372943_0199823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1239	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.67%
Host-Associated	Host-Associated	28.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.17%
Plants	Host-Associated → Plants	28.33%
Aquatic	Environmental → Aquatic	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.00%
Peat	Environmental → Terrestrial → Peat	3.33%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.33%
Roots	Host-Associated → Plants → Roots	3.33%
Freshwater	Environmental → Aquatic → Freshwater	2.50%
Geologic	Environmental → Terrestrial → Geologic	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.83%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.50%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Mine	Environmental → Terrestrial → Geologic → Mine	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.50%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.50%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	10.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.17%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.50%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.50%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.67%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.83%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022897	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L051-202B-4	Environmental	Open in IMG/M
3300022917	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L154-409C-5	Environmental	Open in IMG/M
3300023268	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1009280062	3300002245	Forest Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACXDKEIREFLESR*
Ga0062389_1021695022	3300004092	Bog Forest Soil	MMTCLICGGDMQQDTAEVTELLREHGCISTILGSDGREFQFADGERLEVLGMCNACDANEIRKFLESR*
Ga0062388_1001630133	3300004635	Bog Forest Soil	MLTCLLCGGDMRQDTAEVTELLREGGCISTTSGPDGRKFQFADGEELEVGGTCNACDENEIRKFLESR*
Ga0074072_10000841	3300005260	Soil	MLTCLICGGDMQQDTAEVTELLLEHGCIGTARDSGNRVFRFEDGEQLEVGGMCNACDEKEIREFLESK*
Ga0074072_11325442	3300005260	Soil	MLTCLICGGDMQQDTAEVTELLREHGCIGTTLGCGGREFQFADGERLEGGGMCNACDENEIRKFLALR*
Ga0070683_1004792661	3300005329	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCISTNVDSGGGRAFQFADGETLEVGGMCNACDESEIHKFLEAR*
Ga0070667_1000168552	3300005367	Switchgrass Rhizosphere	VLTCLICGGDMQLDTTEVSERLREAGCIGTTVDSGGGREFQFADGDTLEVGGICNACDEKEIRRFLGAR*
Ga0070709_107199761	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDESEIHKFLEAR*
Ga0070684_1002095701	3300005535	Corn Rhizosphere	MQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDESEIHKFLEAR*
Ga0070731_102005462	3300005538	Surface Soil	MLTCLICGGDMQQDTAAIAELLRDSGCIGTTTDCGGREFQFEDGERLEVGGTCNACDDKEIRAFLKSR*
Ga0070731_106432541	3300005538	Surface Soil	AHPWGNGSLDRLGKLFSMLTCLICGGDMRQDTAEVAELLREHGCIGTTVDSGGREFQFAAGEQLEVGGMCNACDENEIRKFLAQR*
Ga0070665_10000178030	3300005548	Switchgrass Rhizosphere	MLTCLICGGDMQQDTAEVTERLREAGCTSTIVDSDGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0070665_1004591202	3300005548	Switchgrass Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLETR*
Ga0068855_1016093272	3300005563	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCASTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLE
Ga0068856_1017492302	3300005614	Corn Rhizosphere	CGGDMQQDTAEVTERLREAGCTSTIVDSDGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0068852_1014905461	3300005616	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDPGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0068859_1026129821	3300005617	Switchgrass Rhizosphere	VLTCLICGGDMQLDTTEVSERLREAGCIGTTVDSGGGREFQFADGDTLEVGGICNACDEKEIRRFLGA
Ga0070764_100136563	3300005712	Soil	MLTCLICGGDMRQDTADVAELLQQGGCISTTAGPDGRQFLFADGEELEVGGTCNACDATEIRKFLESR*
Ga0068871_1002280262	3300006358	Miscanthus Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0079222_118422672	3300006755	Agricultural Soil	MLTCLICGGDMQQDTTEVSERLREAGCTGTIVESGGGRVFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0099828_119625021	3300009089	Vadose Zone Soil	MLTCLICGGDMQQDTAEITELLRENGCIGTTTDSGGREFQFEDGERLEVGGTCNACDDKEIREFLKSR*
Ga0105240_104892424	3300009093	Corn Rhizosphere	MRQDTAEVTELLREQGCIGTTANCGGREFQFADGEQLEVGGLCNACDEKEIRKFLALR*
Ga0105240_105271801	3300009093	Corn Rhizosphere	RRPFATPMLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0105240_108586941	3300009093	Corn Rhizosphere	MLTCLICGGDMRQDTAEVTELLREQGCIGTTTDSGGRELQFADGEQLEVGGLCNACDEKEIRKFLALR*
Ga0105240_115009351	3300009093	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCISTNVDSGGGRAFQFADGETLDVGGMCNACDENEIRKFLEAR*
Ga0105241_106363843	3300009174	Corn Rhizosphere	MLTCLICGGDMRQDTAEVTELLREQGCIGTTTDSGGREFLFADGEQLEVGGLCNACDEKEIRKFLALR*
Ga0105237_100612573	3300009545	Corn Rhizosphere	MLTCLICGGDMQQDTTEITERLREAGCISTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0105237_103253831	3300009545	Corn Rhizosphere	MRQDTAEVTELLREQGCIGTTANSGGREFQFADGEQLEVGGLCNACDEKEIRKFLALR*
Ga0105237_120775081	3300009545	Corn Rhizosphere	MLTCLICGGDMRQDTARVTELLLQHGCISTTTNEDGREFRFRDGERLEVSGLCNSCDEKEIREFLESRQ*
Ga0105238_115970722	3300009551	Corn Rhizosphere	RMSEDHPMLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRTFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0105249_101674401	3300009553	Switchgrass Rhizosphere	MQLDTTEVSERLREAGCIGTTVDSGGGREFQFADGDTLEVGGICNACDEKEIRRFLGAR*
Ga0134125_117474451	3300010371	Terrestrial Soil	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDPGGGRAFQFADGETLEVGGMCNACDENEIRKFLETR*
Ga0134128_113906142	3300010373	Terrestrial Soil	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKSLETR*
Ga0134128_121427051	3300010373	Terrestrial Soil	MLTCLICGGDMQQDTAEVAELLREHGCIGTTVDSGGRAFQFAGGEQLEVGGMCNACDEQEIRKFLEQR*
Ga0136449_1004516521	3300010379	Peatlands Soil	MLTCLICGGDMRQDTSEVAQLLQESGCTSTTMGPDGREFQFEDGERLEVGGMCNACDEKEIRLFLESRDGTTEG*
Ga0137363_113325881	3300012202	Vadose Zone Soil	PMLTCLICGGDMRQDTAEIARLLHESGCISTTMGPDGREFQFQDGESLEVGGMCNACDEKEIRLFLESRD*
Ga0137378_108428512	3300012210	Vadose Zone Soil	MLTCLICGGDMRQDTAEITQLLHENGCTGTTMGRDGREFQFRDGERLEVGGMCNACD
Ga0137386_103825361	3300012351	Vadose Zone Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNVCDDKEIREFLESR*
Ga0137385_100760204	3300012359	Vadose Zone Soil	ICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACDDKEIRAFLESR*
Ga0137385_101318173	3300012359	Vadose Zone Soil	MLTCLICGGDMRQDTAEITQLLHENGCTGTTMGRDGREFQFRDGERLEVGGMCNACDEKEIRLFLESRDGITE*
Ga0137385_105561443	3300012359	Vadose Zone Soil	ICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVSGTCNACDDKEIREFLESR*
Ga0137419_109524052	3300012925	Vadose Zone Soil	MLTCLICGGDMRQDTAEITQLLHENGCTGTTMGRDGREFQFRDGESLEVGGMCNACDEKEIRLFLESRDGITEG*
Ga0137416_111812742	3300012927	Vadose Zone Soil	MLTCLICGGDMRQDTAEIATLLHESGCISTTMGPDGREFQFQDGERLEVGGMCNACDEKEIRLFLESRHAP*
Ga0137404_103768812	3300012929	Vadose Zone Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDAGGREFQFADGERLEVGGMCNACDDKEIREFLESR*
Ga0168317_10037287	3300012982	Weathered Mine Tailings	MLTCLICGGDMRQDTAEIAELLHECGCISTTVDSGGREFRFADGERLEVGGMCNACDEIEIRKFLESR*
Ga0182024_108963432	3300014501	Permafrost	MLTCLICGGDMRQDTAEITERLREAGCTATTVDSGGGREFQFADGETLEVGGMCNACDENEIRKFLEER*
Ga0182024_128027071	3300014501	Permafrost	GGDMRQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACDDKEIREFLKSR*
Ga0157379_100407916	3300014968	Switchgrass Rhizosphere	MQQDTAEVTELLGERGCIGTTVNSGGREFQFADGEQLEVGGMCNACDENEIRKFLGLK*
Ga0157379_102456532	3300014968	Switchgrass Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTIVDSDGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR*
Ga0137418_107058921	3300015241	Vadose Zone Soil	MLTCLICCGDMRQDTAEITQLLHENGCTGTTMGRDGREFQFRDGESLEVGGMCNACDEKEIRLFLESRDGITEG*
Ga0181502_12046642	3300019242	Peatland	MLTCLICGGDMRQDTVEITELLREHGCIGTTTSSDGREFQFADGEQLEVGGMCNACDEKEIRKFLGLE
Ga0190264_119549852	3300019377	Soil	MLTCLICGGDMRQDTSAIADLLRDNGCISTSETEDGREFVFDNGERLEVTGLCNSCDAREIREFLES
Ga0210407_113208661	3300020579	Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDCGGREFQFEDGERLEVGGTCNACDDKEIREFLESR
Ga0210403_100456461	3300020580	Soil	MLTCLICGGDMRQDTSEVAKLLHESGCISTTMGPGGREFQFQDGESLEVGGMCNACDEKEIRQFLESRDGPTER
Ga0210401_111809611	3300020583	Soil	MLTCLICGGDMRQDTAEITELLRECGCIGTTAGPNGREFQFADGEQLEVGGMCNACDENEIRKFLESR
Ga0179596_100211881	3300021086	Vadose Zone Soil	MLTCLICGGDMRQDTAEIATLLHESGCVSTTMGPDGREFQFQDGERLEVGGMCNACDEKEIRLFLESRHAP
Ga0210406_100165068	3300021168	Soil	MLTCLICGGDMRQDTAEVAQLLHESGCISTTMGPDGREFQFQDGECLEVGGMCNACDEKEIRLFLESRDGASDGAPSR
Ga0210396_115259951	3300021180	Soil	MTARTFLAHIFPGDISMLTCLLCGGDMRQDTAEVTELLREGGCISTTSGPDGRRFQFADGEELEVGGTCNACDEN
Ga0210388_100028736	3300021181	Soil	MTARTFLAHIFPGDISMLTCLLCGGDMRQDTAEVTELLREGGCISTTSGPDGRRFQFADGEELEVGGTCNACDENEIRKFLESR
Ga0210385_107204242	3300021402	Soil	MLTCLICGGDMRQDTADVAELLQQGGCISTTAGPDGRQFLFADGEELEVGGTCNACDATEIRKFLESR
Ga0210383_117832912	3300021407	Soil	MTARTFLAHIFPGDISMLTCLLCGGDMRQDTAEVTELLREGGCISTTSGPDGRRFQFADGEELEVGGTCNAC
Ga0210391_102151192	3300021433	Soil	MRQDTAEVTELLREGGCISTTSGPDGRRFQFADGEELEVGGTCNACDENEIRKFLESR
Ga0210398_115691011	3300021477	Soil	DNLRPNRCCVRQWQPAPSCPGDISMLTCLLCGGDMRQDTAEVSELLRERGCISTTSGPDGRRFQFADGEELEVGGTCNACDENEIRKFLESR
Ga0247764_10957922	3300022897	Plant Litter	MLTCLICGGDMRQDTARVTELLLHHGCVSTTTNEDGREFLFSDGERLEVSGLCNSCDEKEIRAFLASRP
Ga0247777_10024506	3300022917	Plant Litter	MLTCLICGGDMRQDTARVTELLLQHGCISTTTNEDGREFRFRDGERLEVSGLCNSCDEKEIREFLESRQ
Ga0247777_13102351	3300022917	Plant Litter	MLTCLICGGDMRQDTARVTELLLQHGCVSTTTNEDGREFLFSDGERLEVSGLCNSCDEKEIRAFLASRP
Ga0247765_10939841	3300023268	Plant Litter	MLTCLICGGDMRQDTARVTELLLHHGCVSTTTNEDGREFLFSDGERLEVSGLCNSCDEKEIRAFLAS
Ga0179589_104387932	3300024288	Vadose Zone Soil	MLTCLICGGDMRQDTAEITQLLHENGCTGTTMGRDGREFQFRDGERLEVGGMCNACDEKEIRLFLESRDGITE
Ga0207710_101261793	3300025900	Switchgrass Rhizosphere	MLTCLICGGDMQQDTAEVTERLREAGCTSTIVDSDGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR
Ga0207695_101861221	3300025913	Corn Rhizosphere	MRQDTAEVTELLREQGCIGTTANCGGREFQFADGEQLEVGGLCNACDEK
Ga0207695_105272861	3300025913	Corn Rhizosphere	PMSEDHPMLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR
Ga0207695_105795713	3300025913	Corn Rhizosphere	MRQDTAEVTELLREQGCIGTTTDSGGREFQFADGEQLEVGGLCNACDEKEIRKFLALR
Ga0207671_102695643	3300025914	Corn Rhizosphere	MSEDHPMLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR
Ga0207663_114213451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNACDESEIHK
Ga0207649_112018961	3300025920	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRAFQFADGETLEVGGMCNTCDENEIRKFLEAR
Ga0207665_105977131	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	QDTAEVTERLREAGCTSTIVDSDGGRAFQFADGETLEVGGMCNACDENEIRKFLETR
Ga0207661_103612032	3300025944	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCISTNVDSGGGRAFQFADGETLEVGGMCNACDESEIHKFLEAR
Ga0207712_100476565	3300025961	Switchgrass Rhizosphere	MQLDTTEVSERLREAGCIGTTVDSGGGREFQFADGDTLEVGGICNACDEKEIRRFLGAR
Ga0207702_106923692	3300026078	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDSGGGRTFQFADGETLEVGGMCNACDENEIRKFLEAR
Ga0207698_114692251	3300026142	Corn Rhizosphere	MLTCLICGGDMQQDTTEVTERLREAGCTSTNVDPGGGRAFQFADGETLEVGGMCNACDENEIRKFLEAR
Ga0209331_10990322	3300027603	Forest Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACDDKEIREFLESR
Ga0209579_103654802	3300027869	Surface Soil	MLTCLICGGDMQQDTAAIAELLRDSGCIGTTTDCGGREFQFEDGERLEVGGTCNACDDKEIRAFLKSR
Ga0209006_106220831	3300027908	Forest Soil	MLTCLICGGDMRLDTTAITEQLRDAGCIGTSVDSSGGREFRFEDGETLEVGGMCNACDESEIRKFLDAR
Ga0137415_102665392	3300028536	Vadose Zone Soil	MLTCLICGGDMRQDTAEIATLLHESGCISTTMGPDGREFQFQDGERLEVGGMCNACDEKEIRLFLESRHAP
Ga0137415_107506661	3300028536	Vadose Zone Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFKDGERLEVGGMCNACDDKEIREFLESR
Ga0265334_100292232	3300028573	Rhizosphere	MLTCLICGGDMQQDTAEVTGLLLEHGCISTTTDSGNRVFQFEDGEQLEVGGLCNACDEKEIREFLESK
Ga0222749_104728731	3300029636	Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACDDKEIREFLKSR
Ga0311371_103220602	3300029951	Palsa	MRQDTAEVSELLQENGCISTTTGPDGRQFLFADGEELEVGGMCNACDETEIRKFLESR
Ga0311371_111801532	3300029951	Palsa	MLTCLICGGDMRMDTTAISEQLRDAGCIGTRVDSSGGREFQFSDGETLEVGGTCNACDESEIRKFLEAR
Ga0307511_1000027033	3300030521	Ectomycorrhiza	MLTCLICGGDMQQDTAEITQLLRESGCIGTTTDSGGREFQFEDGEQLEVSGTCNACDDKEIRKFLESR
Ga0311357_109258201	3300030524	Palsa	MDTTAISEQLRDAGCIGTRVDSSGGREFQFSDGETLEVGGTCNACDESEIRKFLEAR
Ga0075386_120143812	3300030916	Soil	MMTCLICGGDMRQDTAEVTELLRQHGCIRTTVGSEGREFQFADGERLEVVGLCNACDAKEIRKYLESK
Ga0073994_117477622	3300030991	Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFKDGERLEVGGTCNACDDKEIRKFLESR
Ga0307499_101910122	3300031184	Soil	MLTCLICGGDMRQDTAKITELLRENGCISTTVGEDGREFLFNDGERLEVMGMCNSCDEREIREFIASR
Ga0307500_101073802	3300031198	Soil	VLTCLICGGNMQQDTSEMADMLREHGCISTTVGPDGREFQFADGERLEVGGMCNACDEKEIREYLASK
Ga0307500_102382471	3300031198	Soil	RQDTAKITELLRENGCISTTVGEDGREFLFNDGERLEVMGMCNSCDEREIREFIASR
Ga0307500_102873071	3300031198	Soil	FDISMLTCLICGGDMRQDTAKITELLRENGCISTTVGEDGREFLFNDGERLEVTGMCNSCDEREIREFIASR
Ga0170824_1099573183	3300031231	Forest Soil	QSPRTTRFMMTCLICGGDMRQDTAEVTELLRQHDCIRTTVGSEGREFQFADGERLEVVGLCNACDAKEIRKYLESK
Ga0170824_1238757721	3300031231	Forest Soil	MLTCLICGGDMQQDTAEITALLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACDGKEIRAFLKSR
Ga0302323_1019909422	3300031232	Fen	MLTCLICGGDMQQDTAEISELLRASGCIGTTTDSGGREFQFDNGERLEVGGTCNACDEKEIREFLESR
Ga0307508_103644313	3300031616	Ectomycorrhiza	MLTCLICGGDMQQDTAEITQLLRESGCIGTTTDSGGREFQFGDGEQLEVSGTCNACDDKEIRKFLESR
Ga0307508_105200641	3300031616	Ectomycorrhiza	MLTCLICGGDMQQDTAEITELLRENGCIGTTTDSGGREFQFEDGERLEVGGTCNACDGKEIREFLKSR
Ga0310686_1010095722	3300031708	Soil	MLTCLICGGDMRMDTTAISEQLRDAGCIGTSVDSSGGREFQFADGETLEVGGTCNACDESEIRKFLEAR
Ga0310686_1036999533	3300031708	Soil	MMTCLICGGDMRQDTAEVTELLRQYGCIRTTVGSDGREFVFEDGERLEVLGMCNACDEKEIRQYLESR
Ga0310686_1044931251	3300031708	Soil	MTARTFLAHICSGDISMLTCLLCGGDMRQDTAEVTELLREGGCISTTAGPDGRRFQFADGEELEVGGTCNACDENEIRKFLESR
Ga0310686_1113349385	3300031708	Soil	MQQDTAEVTELLREHGCISTTVDSSGREFRFADGEQLEVGGMCNACDENEIRKFLALR
Ga0310686_1136970285	3300031708	Soil	MLTCLICSGDMRQDTAEITELLRERGCIGTTVNSGGREFQFADGEELEVGGMCNACDEIEIRKFLGLS
Ga0310686_1156578515	3300031708	Soil	MLTCLICGGDMRQDTAEVTQQLRDAGCISTTVDSGGGREFKFSDGETLEVGGTCNACDANEIRKFLDTR
Ga0307476_100943253	3300031715	Hardwood Forest Soil	MRQDTAEVTELLRECGCIGTTSGPDGRRFQFADGEELEVGGTCNACDENEIRKFLESR
Ga0307474_107800702	3300031718	Hardwood Forest Soil	MTARTFLAHICPGDISMLTCLLCGGDMRQDTADVTELLREGGCIGTTSGPDGRRFQFADGEELEVGGTCNACDENEIRKFLESR
Ga0307479_100740733	3300031962	Hardwood Forest Soil	MLTCLICGGDMQQDTAEITELLRESGCIGTTTDSGGREFQFEDGERLEVGGTCNACDGKEIRKFLESR
Ga0307479_107491961	3300031962	Hardwood Forest Soil	MLTCLICGGDMQQDTAEVTELLRERGCISTTVDSGGREFQFADGEQLEVGGMCNACDEKEIRKFLELR
Ga0307416_1014784171	3300032002	Rhizosphere	MLTCLICGGDMQQDTDEISDLLRDGGCISTTRIPGGGREFLFNDGERLEVGGMCNACDAKEIREFLASR
Ga0308173_112115161	3300032074	Soil	MLTCLICGGDMRQDTAGVTQLLLQHGCISTTTTEDGREFRFSDGERLEVSGLCNSCDEKEILEFLESRR
Ga0311301_124094731	3300032160	Peatlands Soil	MLTCLICGGDMRQDTSEVAQLLQESGCTSTTMGPDGREFQFEDGERLEVGGMCNACDEKEIRLFLESRDGTTEG
Ga0307470_109151401	3300032174	Hardwood Forest Soil	MLTCLICGGDMRQDTSEVAQLLHESGCISTTMGRDGREFQFENGERLEVGGMCNACDEKEIRLFLESRDGT
Ga0310811_105752573	3300033475	Soil	MLTCLICGGDMRQDTAEVTELLREHGCIGTTVDSNGREFRFADGEQLEVGGMCNACDEIEIRKFLGLR
Ga0299912_103310513	3300033489	Soil	ICGGDMQQDTGTVTVLLREHGCISTTVTSDGREFHFKDRESLEVGGLCNACDEKEIRQFLGA
Ga0299912_106581512	3300033489	Soil	MLTCLVCGGDMQQDTDAVSDLLRKHGCVSTTVTPDGREFHFKDGEVLEVGGMCNACDEKEIRAFLGCTSV
Ga0372943_0199823_1058_1237	3300034268	Soil	MLTCLICGGDMRQDTAEIAELLHECGCISTTVDSGGREFQFADGERLEVGGMCNACDEIE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073625

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences