Metagenome Family F073685

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073685
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	101 residues
Representative Sequence	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS
Number of Associated Samples	103
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.17 %
% of genes near scaffold ends (potentially truncated)	34.17 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.500 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 69.05% β-sheet: 0.00% Coil/Unstructured: 30.95%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02075	RuvC	45.83
PF01709	Transcrip_reg	38.33
PF01168	Ala_racemase_N	0.83
PF13946	DUF4214	0.83
PF13431	TPR_17	0.83
PF11949	DUF3466	0.83
PF00005	ABC_tran	0.83
PF00072	Response_reg	0.83
PF07721	TPR_4	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	45.83
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	38.33

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	81.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	63.33 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	11.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.33 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	11.67 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.83 %
Brachyspirales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Brachyspirales	0.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.33 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	11.67 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.83 %
Brachyspiraceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Brachyspirales → Brachyspiraceae	0.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.33 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	11.67 %
Brachyspira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Brachyspirales → Brachyspiraceae → Brachyspira	0.83 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	0.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.33 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	11.67 %
Brachyspira intermedia	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Brachyspirales → Brachyspiraceae → Brachyspira → Brachyspira intermedia	0.83 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	0.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.33 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	11.67 %
Parcubacteria bacterium SCGC AAA036-E14	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Parcubacteria bacterium SCGC AAA036-E14	0.83 %
Brachyspira intermedia	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Brachyspirales → Brachyspiraceae → Brachyspira → Brachyspira intermedia	0.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100668723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1515	Open in IMG/M
3300000559\|F14TC_107179538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300000789\|JGI1027J11758_12851988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300000886\|AL3A1W_1108858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300003228\|JGI26300J46817_100036	All Organisms → cellular organisms → Bacteria → Acidobacteria	3120	Open in IMG/M
3300004633\|Ga0066395_10684997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300005171\|Ga0066677_10767426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300005175\|Ga0066673_10783961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300005178\|Ga0066688_10302376	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300005181\|Ga0066678_10256711	All Organisms → cellular organisms → Bacteria → Acidobacteria	1132	Open in IMG/M
3300005332\|Ga0066388_100029749	All Organisms → cellular organisms → Bacteria	5090	Open in IMG/M
3300005338\|Ga0068868_100761108	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300005353\|Ga0070669_100848431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300005364\|Ga0070673_100206082	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300005438\|Ga0070701_11314979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300005441\|Ga0070700_101140677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300005447\|Ga0066689_10006695	All Organisms → cellular organisms → Bacteria	4964	Open in IMG/M
3300005451\|Ga0066681_10235255	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300005459\|Ga0068867_100372797	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005544\|Ga0070686_100900576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300005549\|Ga0070704_101705405	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Brachyspirales → Brachyspiraceae → Brachyspira → Brachyspira intermedia	582	Open in IMG/M
3300005559\|Ga0066700_10638321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300005560\|Ga0066670_10028509	All Organisms → cellular organisms → Bacteria → Acidobacteria	2700	Open in IMG/M
3300005560\|Ga0066670_10249799	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300005561\|Ga0066699_10022564	All Organisms → cellular organisms → Bacteria	3488	Open in IMG/M
3300005569\|Ga0066705_10046354	All Organisms → cellular organisms → Bacteria	2422	Open in IMG/M
3300005598\|Ga0066706_10313445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1237	Open in IMG/M
3300005617\|Ga0068859_101070554	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300005719\|Ga0068861_100130429	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300005843\|Ga0068860_101780194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300006049\|Ga0075417_10181727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	990	Open in IMG/M
3300006058\|Ga0075432_10427177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300006237\|Ga0097621_101191861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300006358\|Ga0068871_101673416	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006794\|Ga0066658_10115302	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300006796\|Ga0066665_10350944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1203	Open in IMG/M
3300006800\|Ga0066660_10759327	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300006800\|Ga0066660_11656466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300006854\|Ga0075425_100000089	All Organisms → cellular organisms → Bacteria	77600	Open in IMG/M
3300006871\|Ga0075434_100252180	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1784	Open in IMG/M
3300006871\|Ga0075434_101924517	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Parcubacteria bacterium SCGC AAA036-E14	597	Open in IMG/M
3300006876\|Ga0079217_10044258	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300006876\|Ga0079217_10382736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300009012\|Ga0066710_100017093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	7809	Open in IMG/M
3300009012\|Ga0066710_101474595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300009012\|Ga0066710_103010058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300009090\|Ga0099827_11048299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300009147\|Ga0114129_10097491	All Organisms → cellular organisms → Bacteria → Acidobacteria	4070	Open in IMG/M
3300009147\|Ga0114129_12094216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300009147\|Ga0114129_12853534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300009148\|Ga0105243_11262505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300009148\|Ga0105243_11792532	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300009176\|Ga0105242_10000853	All Organisms → cellular organisms → Bacteria	23628	Open in IMG/M
3300009176\|Ga0105242_10530377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1125	Open in IMG/M
3300009176\|Ga0105242_13259899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300009177\|Ga0105248_10919270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	988	Open in IMG/M
3300009545\|Ga0105237_11410445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300009551\|Ga0105238_11872745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300010046\|Ga0126384_12256410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300010047\|Ga0126382_10062515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2243	Open in IMG/M
3300010047\|Ga0126382_11352882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300010335\|Ga0134063_10332788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300010362\|Ga0126377_13413243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300010375\|Ga0105239_11842024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300010375\|Ga0105239_13583602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300010397\|Ga0134124_11129315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	801	Open in IMG/M
3300010397\|Ga0134124_11700359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300010399\|Ga0134127_11607736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300010399\|Ga0134127_12006901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300010400\|Ga0134122_10312510	All Organisms → cellular organisms → Bacteria → Acidobacteria	1353	Open in IMG/M
3300010401\|Ga0134121_10616442	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1017	Open in IMG/M
3300011119\|Ga0105246_10443271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1089	Open in IMG/M
3300012202\|Ga0137363_11778077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300012205\|Ga0137362_11196413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300012208\|Ga0137376_11409061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300012212\|Ga0150985_100415984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300012350\|Ga0137372_10366393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1099	Open in IMG/M
3300012353\|Ga0137367_10744289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300012469\|Ga0150984_113423388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	938	Open in IMG/M
3300012929\|Ga0137404_11214617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300012930\|Ga0137407_12275905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300012948\|Ga0126375_10361249	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1034	Open in IMG/M
3300012958\|Ga0164299_10480305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300012960\|Ga0164301_11807721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300012961\|Ga0164302_11669261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300012975\|Ga0134110_10209044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300013297\|Ga0157378_10066330	All Organisms → cellular organisms → Bacteria	3233	Open in IMG/M
3300013297\|Ga0157378_10616403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1098	Open in IMG/M
3300013306\|Ga0163162_10035894	All Organisms → cellular organisms → Bacteria → Acidobacteria	4939	Open in IMG/M
3300013308\|Ga0157375_10992409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	980	Open in IMG/M
3300013308\|Ga0157375_12008901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300014325\|Ga0163163_12641286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300014968\|Ga0157379_11199204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300015085\|Ga0167632_1000446	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	7373	Open in IMG/M
3300015168\|Ga0167631_1001726	All Organisms → cellular organisms → Bacteria → Acidobacteria	3141	Open in IMG/M
3300015374\|Ga0132255_105369965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300017792\|Ga0163161_10412929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1084	Open in IMG/M
3300018429\|Ga0190272_10647007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300018431\|Ga0066655_10176280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1298	Open in IMG/M
3300018476\|Ga0190274_10839269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300024317\|Ga0247660_1002316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2649	Open in IMG/M
3300025918\|Ga0207662_10273837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1115	Open in IMG/M
3300025923\|Ga0207681_10837501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300025934\|Ga0207686_10000017	All Organisms → cellular organisms → Bacteria	195143	Open in IMG/M
3300025939\|Ga0207665_10675025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	811	Open in IMG/M
3300025941\|Ga0207711_12081922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300025960\|Ga0207651_10495184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1056	Open in IMG/M
3300025981\|Ga0207640_12065893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300026023\|Ga0207677_11786599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300026035\|Ga0207703_10165231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1941	Open in IMG/M
3300026075\|Ga0207708_10931435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300026095\|Ga0207676_10440074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1227	Open in IMG/M
3300026118\|Ga0207675_100653132	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1058	Open in IMG/M
3300026325\|Ga0209152_10424513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300026331\|Ga0209267_1185501	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	815	Open in IMG/M
3300026523\|Ga0209808_1296840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300026538\|Ga0209056_10220679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1369	Open in IMG/M
3300026552\|Ga0209577_10480349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300027873\|Ga0209814_10163209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	957	Open in IMG/M
3300032180\|Ga0307471_102267894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.17%
Host-Associated	Host-Associated	40.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.17%
Plants	Host-Associated → Plants	40.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.67%
Roots	Host-Associated → Plants → Roots	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.50%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.17%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.50%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.33%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.50%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300003228	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015085	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4B, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015168	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1006687233	3300000364	Soil	KSVAESNENLIGFIASTVETLRQDLTIVRSEMVTKQAFEAAVTALRADIEQVHLRLDTMDHNNASRFEHVEGEISRLRSAVYLLGKDRPEILRLLGQNS*
F14TC_1071795382	3300000559	Soil	MTEHNNDLIGFIASTVETLRDQATAMRDDMTAMRREMVTSDTFDAAIVSVRGDIEQVQMRLDGIEHSVNSRFEHVEGELSRLRSAIYLLGKDRPEVLRLLGQTSS*
JGI1027J11758_128519881	3300000789	Soil	MRLVSESNNNNVIGFIASTVEKLRDELAEMRRQMVTRDTFDAAIISVRGDIEQVQLRLDGIEHSMSSRFEHVEGELSRLRRAVYLLGKDRPEVLRLLGQTSA*
AL3A1W_11088582	3300000886	Permafrost	MLASELVSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTVFEARTTAIRGDIEQVQVRFDSIEHGMSSKFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQDNA*
JGI26300J46817_1000363	3300003228	Soil	LAESNDNLIGFIASSVETINDRLNGIEERMATKTQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS*
Ga0066395_106849972	3300004633	Tropical Forest Soil	LTKVITSKSLAESNDNLIGFIASSVETINDRLSGIEERMATKADINRLDVGVIAIRADIEQIHLRLDTMDHTIASRFEHVEGEISRLRSAVYLLGKDRPEILRLLGHDVS*
Ga0066677_107674262	3300005171	Soil	MAESNNNELIGFIATTVETIRDRVDGIEVRMATKSDINRLEIATTAIRGDIEQVQLRFDGMEHSITSRFEHVEGELSRLRSAVYLLSKDR
Ga0066673_107839611	3300005175	Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQVHLRLDSVEHSLTSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG*
Ga0066688_103023762	3300005178	Soil	MWCITPVTGESNQNNLIGFIASTVETMRDDMTTMRSEMVTKSMFDAAITTVRGDIEQVQLRLDTMEHSVASRFEQVEGEISRLRSAVYLLGKDRPEILRLLGQTTS*
Ga0066678_102567112	3300005181	Soil	MWCITPVIGESNDKNLIGFIASTVETMRDDMTTMREQMATKADITVIRGDIEQVQLRLDSIDHSIASRFEHVEGELSRLRSAVYLLGKDRPEILRLLGQTTS*
Ga0066388_1000297494	3300005332	Tropical Forest Soil	MEGASMRAITEANNNKVIGFIASTVEKLRDDVGTMREQMATKDDITVLRGDIEQVQLRLDGIEHSMNSRFEYVEGEISRLRSAVYLLGKDRPEVLRLLGTT*
Ga0068868_1007611082	3300005338	Miscanthus Rhizosphere	VITSESLAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS*
Ga0070669_1008484312	3300005353	Switchgrass Rhizosphere	SKSVAESNNNEMIGFIASTVETISDRLNGIDERLNGIEERMATKAQLEATTIAIRGDIEQIHLQLDTTEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLGHNGS*
Ga0070673_1002060823	3300005364	Switchgrass Rhizosphere	VITSESLAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0070701_113149791	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0070700_1011406772	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYLLGKDRPEILRLPGQNAS*
Ga0066689_100066953	3300005447	Soil	MWCITPVIGESNDKNLIGFIASTVKTMRDDMTRMREQMATKADSTVIRRDSGQVQLPLDSIDHSIASRFEHVEGELSRLRSAVYLLGKDRPEILRLLGQTSS*
Ga0066681_102352552	3300005451	Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQLHLRLDSMEHSLTSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG*
Ga0068867_1003727972	3300005459	Miscanthus Rhizosphere	MRLVTESNNNNVIGFIASTVESLRDDVASMRQEMATKSDVTILRGDIEQVQLRLDTIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA*
Ga0070686_1009005762	3300005544	Switchgrass Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVFVLGKDRPDILRLLGHNGS*
Ga0070704_1017054051	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VKPTWRRRETAEGACKLFALTKVITSESLAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0066700_106383212	3300005559	Soil	VSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTTAMRGDIEQVQLRLDSIEHGMSSRFEHVEGEVSRLRSAVYLLGKDRPEVLRLLGQAGV*
Ga0066670_100285093	3300005560	Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQVHLRLDSVEHSLTSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNG
Ga0066670_102497992	3300005560	Soil	MANSDNNEMIGFIASTVETIRDRLDGIDERMDGMVTKSMFDAGITAVRGDIEQVHMRLDSMEHSLTSRFEHVEGELSRLRSAVYMLSKDRPEVLRLLGHNGG*
Ga0066699_100225645	3300005561	Soil	MLTKVLASKLVAESNNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTIAIRGDIEQVHLRLESIEHGMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQAGA*
Ga0066705_100463543	3300005569	Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQVHLRLDSVEHSLASRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG*
Ga0066706_103134451	3300005598	Soil	LIGFIASTVETMRDDMTTMRSEMVTKSMFDAAITTVRGDIEQVQLRLDTMEHSVASRFEQVEGEISRLRSAVYLLGKDRPEILRLLGQTTS*
Ga0068859_1010705541	3300005617	Switchgrass Rhizosphere	VITSESLAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVFVLGKDRPDILRLLGHNGS*
Ga0068861_1001304293	3300005719	Switchgrass Rhizosphere	VITSESLAESNDNLIGFIASSVETITDHLNGIEERMATKAHLESATTAIRGDIEQVHLRLNTMEHSVSSRFELVETELSRLRSAVYLLGKDRPEILRLLGHNGS*
Ga0068860_1017801942	3300005843	Switchgrass Rhizosphere	ESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0075417_101817272	3300006049	Populus Rhizosphere	MLRSLPTVAESNNNEVIGCIASAVKTLRDDVASMRSKMVTRGGFDVAITAVRGDIEQVQLRFDSMEHSISSRFEQVEGELSRLRSAVYLLGK
Ga0075432_104271772	3300006058	Populus Rhizosphere	ADNGGALMLRSLPTVAESNNNEVIGCIASAVKTLRDDVASMRSKMVTRGGFDVAITAVRGDIEQVQLRLDSMEHSIASRFEQVEGELSRLRSAVYLLGKDRPDVLRMLGQTSS*
Ga0097621_1011918612	3300006237	Miscanthus Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEGAITAVRGDIEQVHLRLSTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHN
Ga0068871_1016734161	3300006358	Miscanthus Rhizosphere	MRPMTESNNNNVIGFIASTVETMRDDIASMRQEIATKTDVTILRGDIEQVQLRLDTIEHSMSSRFEHVEGEISRLRSAVYLLGKDRP
Ga0066658_101153022	3300006794	Soil	MKVELTQVIASESVSESNDNLIGFIASTVEKLSDSVATMRDEMVTKNTFEAGITAVRGDIEQVQLRLDSIEHGVSSRFEHVEGEISRLRSAVYLLGKDRPEVLRLLGQAGT*
Ga0066665_103509442	3300006796	Soil	MLTKVLASKLVSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTTAMRGDIEQVQLRLDSIEHGMSSRFEHVEGELSRLRRAVYLLGKDRPEVLRLLGQAGA*
Ga0066660_107593272	3300006800	Soil	MPESNNNEVIGFIASTVEIIRDRLDGIDERMDGMATKKHLEVATTAIRGDIEQVHLRLNTMEHSLSSRFEQVEGEISRLRSAVYLLGKDRPDVLRMLGQTSS*
Ga0066660_116564661	3300006800	Soil	MAESNNNELIGFIATTVETIRDRVDGIEVRMATKSDINRLEIATTAIRGDIEQVQLRFDGMEHSITSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG*
Ga0075425_10000008953	3300006854	Populus Rhizosphere	VIASESVSESNDNLIGFIASTVEKLSDDVGTMRQQMVTKDAFEAGITSVRGDIERVQLRLDGIEHDVSSKFEHVEGELSRLRGAVYLLGKDRPEVLRLLGQTSA*
Ga0075434_1002521803	3300006871	Populus Rhizosphere	VIRSESLAESNDNLIGFIASSVEKLRDDVTSICAEMVTKRAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRGAVYLLGKDRPEILRLLGHNGS*
Ga0075434_1019245171	3300006871	Populus Rhizosphere	MKVELTKVIASESVSESNDNLIGFIASTVEKLSDDVGTMRQQMVTKDAFEAGITSVRGDIERVQLRLDGIEHDVSSKFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA*
Ga0079217_100442582	3300006876	Agricultural Soil	MLRSSPTVAESNNNEVIGFIASTVETMRNDMASMRDVMVTKDSFDAAVTAVSGEIEQVQLRLDSMEHSVASRFENVEGQISRLRSAVYLLGKDDPDVLRLLGHKNS*
Ga0079217_103827361	3300006876	Agricultural Soil	MLRSSPTVAESNNNEVIGFIASTVETMRNDMASMRAVMVTKDSFDAAITAVRGDIEQVQLRLDSMEHSVASRFELVEGQISRLRSAVYL
Ga0066710_1000170935	3300009012	Grasslands Soil	MWCITPVIGESNDKNLIGFIASTVETMRDDMTTMREQMATKADITVIRGDIEQVQLRLDSIDHSIASRFEHVEGELSRLRSAVYLLGKDRPEILRLLGQTTS
Ga0066710_1014745952	3300009012	Grasslands Soil	VLASKLVSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTTAMRGEIEQVQLRLDSIEHGVSSRFEHVEGEISRLRSAVYLLGKDRPEVLRLLGQSST
Ga0066710_1030100582	3300009012	Grasslands Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAFTAVRGDIEQVHLRLDSVEHSLASRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG
Ga0099827_110482992	3300009090	Vadose Zone Soil	GVRLLQARTLALQSHQTMLTKVLASKLVSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTTAMRGDIEQVQLRLDSIEHGMSSRFEHVAGELSRLRSAVYLLGKDRPEVLRLLGQAGA*
Ga0114129_100974912	3300009147	Populus Rhizosphere	MLGSLPTVAESNNNEVIGFIASTVETLRDDVASMHSEMVTRGGFDVAITAVRGDIEQVQLRFDSMEHSIASRFEQVEGEISRLRSAVCLPGKDRPDGLRMLGQTSS*
Ga0114129_120942162	3300009147	Populus Rhizosphere	MLRSSPTVAESNNNEVIGFIASTVETLRDDVASMRSEMVTRAAFDVAITAVRGDIEQVQLRLDSMEHSIASRFEQVEGELSRLRSAVYLLGKDRPDVLRMLGQTSS*
Ga0114129_128535342	3300009147	Populus Rhizosphere	MLRSLPTVAESNNNEVIGCIASAVKTLRDDVASMRSKMVTRGGFDVAITAVRGDIEQVQLRFDSMEHSISSRFEQVEGEISRLRSAVYLPGKDRPDVLRMFG*
Ga0105243_112625051	3300009148	Miscanthus Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQMETELSRLRSAVYLLGKDRPEILRLLGQNAS*
Ga0105243_117925322	3300009148	Miscanthus Rhizosphere	INDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0105242_1000085316	3300009176	Miscanthus Rhizosphere	VEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVFVLGKDRPDILRLLGHNGS*
Ga0105242_105303772	3300009176	Miscanthus Rhizosphere	VKPTWRRRETAEGACKLFALTKVITSESLAESNDNLIGFIASSVETITDHLNGIEERMATKAHLESATTAIRGDIEQVHLRLNTMEHSVSSRFELVETELSRLRSAVYLLGKDRPEILRLLGHNGS*
Ga0105242_132598992	3300009176	Miscanthus Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0105248_109192701	3300009177	Switchgrass Rhizosphere	KVITSESLAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEVAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0105237_114104452	3300009545	Corn Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFENAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKD
Ga0105238_118727451	3300009551	Corn Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEIVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHN
Ga0126384_122564102	3300010046	Tropical Forest Soil	MRAMTESNNNKVIGFIASTVEKLRDDVTTIREEMATKADVTILRGDIEQVQLRLDGLEHSVSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQNRA*
Ga0126382_100625152	3300010047	Tropical Forest Soil	MRLVTESNNNSVIGFIASAVETLRNELTAMRSQMVTRDTFDAAIVALRGDIEQVQLRLDGIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQGSTS*
Ga0126382_113528822	3300010047	Tropical Forest Soil	MLRRSGFQNSDRIGSMADGESNNVIGFIAGTVETIRNEVSTIRSEMVTKNTFEATTTAIRGDIEQVQLRLDAMEHVMASKFEQVEGELSRLRSAVYVLGKDRPDVLRLLGQSNP*
Ga0134063_103327881	3300010335	Grasslands Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQVHLRLDSVEHSLTSRFEHVEGELSRLRSAVYLLGKDRPEILRLLGHNGG*
Ga0126377_134132431	3300010362	Tropical Forest Soil	RERWTDSMRLVTESNNNSVIGFIASTVETLRNELTAMRSQMVTRDTFDAAIVALRGDIEQVQLRLDGIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEILRLLGPSVA*
Ga0105239_118420241	3300010375	Corn Rhizosphere	STVETISDRLNGIDERLNGIEERMATKAQLEATTIAIRGDIEQIHLRLDTTEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLGHNGS*
Ga0105239_135836021	3300010375	Corn Rhizosphere	NLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS*
Ga0134124_111293152	3300010397	Terrestrial Soil	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSVFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYLLGKDRPEILRLLGQNVS*
Ga0134124_117003591	3300010397	Terrestrial Soil	RQPEIGSGTCKSFALTKVITSESLAESNDSLIGFIASSVETINDRLNGIEERMATKTQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGSPDFHNCPFMIC*
Ga0134127_116077361	3300010399	Terrestrial Soil	MIGFIASTVETISDRLNGIEERLNGIEERMATKAQLEATTIAIRGDIEQIHLRLDTTEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLGHNGS*
Ga0134127_120069012	3300010399	Terrestrial Soil	LAESNDNLIGFIASSVETISDRLNGIEERMATKAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYLLGKDRPDVLRLLGRNGS*
Ga0134122_103125102	3300010400	Terrestrial Soil	SGTCKTFALTRVITSESLAESNDNLIGFIASSVETINDCLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRGAVYLLGKDRPDVLRLLGRNGS*
Ga0134121_106164422	3300010401	Terrestrial Soil	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS*
Ga0105246_104432712	3300011119	Miscanthus Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEVAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVFVLGKDRPDILRLLGHNRS*
Ga0137363_117780771	3300012202	Vadose Zone Soil	KSMSESNDNLIGFIASTVETIRHEVTTIRGEMVTKTTFEATTTAIRGDIEQVQLRLNSIEHGMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQAGT*
Ga0137362_111964132	3300012205	Vadose Zone Soil	MKVELTQVIASESVSESNDNLIAFIASTVEKLSDDVATMRDEMVTKNAFEAGITAVRGDIEQVQLRLDGIEHDMSSEFEHFEGELSRLRSAVYLLGKDRPEVLRLLGQTNAWSSLKHI*
Ga0137376_114090612	3300012208	Vadose Zone Soil	SVAGSNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTIAIRGDIEQVQLRLDSIEHGVSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQDSV*
Ga0150985_1004159841	3300012212	Avena Fatua Rhizosphere	SLAESNDNLIGFIASSVEKLRDDVASIGAEMVTKSAFDAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0137372_103663931	3300012350	Vadose Zone Soil	MKVELTQVITSESVSESNDNLIGFIASTVEKLSDDVATMRDEMVTKNAFEAGITAVRGDIEQVQLRLDGIEHDVSSKFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA*
Ga0137367_107442892	3300012353	Vadose Zone Soil	MANSDNNEMIGFIASTVETLRSDLTAVRSQMVTKDSFDVAITAVRGDIEQVHLRLDSMEHGLASRFEHVEGELSRLRSAVYLLGKDRPEILRLLGHNDG*
Ga0150984_1134233882	3300012469	Avena Fatua Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEAATTAVRGDIEQVHLRLNTMEYSVSSRVEQVETELSRLRSAVYFLGKDRPEILRLLGQNSS*
Ga0137404_112146172	3300012929	Vadose Zone Soil	IGFIASTVETIREEVTTIRGEMVTKATFEATTTAIRGDIEQVQLRLDSIEHGVSSRFEHVEGEISRLRSAVYLLGKDRPEVLRLLGQAGT*
Ga0137407_122759051	3300012930	Vadose Zone Soil	VSESNDNLIGFIASTVETIREEATTIRDEMVTKATFEATTTAIRGDIEQVQLRLDIIEHGVSSRFEHVEGEISRLRSAVYLLGKDRPEVLRLLGQAST*
Ga0126375_103612492	3300012948	Tropical Forest Soil	MLRRSGFQNSDSIGSMADGESNNVIGFIAGTVETIRNEVSTIRSEMVTKNTFETTTTAIRGDIEQVQLRLDTMEHVMASKFEQVEGELSRLRSAVYVLGKDRPDVLRLLGQSNP*
Ga0164299_104803052	3300012958	Soil	FIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS*
Ga0164301_118077211	3300012960	Soil	SESLAESNDNLIGFIASSVEKLRDDVASIRAEMVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLSKDRPEILRLLGHNGS*
Ga0164302_116692612	3300012961	Soil	LAESNDNLIGFIASSVEKLRDEVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGRNGS*
Ga0134110_102090442	3300012975	Grasslands Soil	IASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQVHLRLDSVEHSLTSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG*
Ga0157378_100663302	3300013297	Miscanthus Rhizosphere	MIGFIASTVETISDRLNGIDERLNGIEERMATKAQLEATTIAIRGDIEQTHLRLDTTEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLGHNGS*
Ga0157378_106164032	3300013297	Miscanthus Rhizosphere	LAESNDNLIGFIASGVETINDRLSGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVPGKDRPDILRLLGHNGS*
Ga0163162_100358943	3300013306	Switchgrass Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0157375_109924092	3300013308	Miscanthus Rhizosphere	LAESNDNLIGFIASSVETISDRLNGIGERMATLATKAQLAAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS*
Ga0157375_120089011	3300013308	Miscanthus Rhizosphere	LAESNDNLIGFIAISVEKLRDDVTSIRAEMLTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYLLGKDRPEILRLLGQNAS
Ga0163163_126412861	3300014325	Switchgrass Rhizosphere	LAESNDNLLGFIASSVETISDCLNGIEERMATRAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS
Ga0157379_111992041	3300014968	Switchgrass Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILR
Ga0167632_10004465	3300015085	Glacier Forefield Soil	MLASELVSESNDNLIGFIASTVEPIRDEVTTIRGEMVTKTVFEATTTAIRGDIEQVQVRFDSIEHGMSSRFEHVEGELSRLRSAVYLPGKDRPEVLRLLGQDNA*
Ga0167631_10017263	3300015168	Glacier Forefield Soil	MLASELVSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTVFEATTTAIRGDIEQVQVRFDSIEHGMSSKFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQDNA*
Ga0132255_1053699651	3300015374	Arabidopsis Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPEILRLLGHNGS*
Ga0163161_104129292	3300017792	Switchgrass Rhizosphere	MIGFIASTVETISDRLNGIDERLNGIEERMATKAQLEATTIAIRGDIEQTHLRLDTTEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLG
Ga0190272_106470072	3300018429	Soil	MLPLSEQVAESNNNEVIGFIASTVETMRNDMASMRDVMVTKDSFDAAVTAVRGDIEQIHLRLDSLDHRISSRDEHFDAEISRLRSAVYVLG
Ga0066655_101762802	3300018431	Grasslands Soil	MWCITPVIGESNDKNLIGFIASTVETMRDDMTTMREQMATKAGITVIRGDIEQVQLRLDSIDHSIASRFEHVEGELSRLRSAVYLLGKDRPEILRLLGQTTS
Ga0190274_108392692	3300018476	Soil	ATTVERLRDDIALMRQEMATKTDVTILRGEIEQVQLRLDTIEHSMSSRFEHVEGEISRLRSAVYLLGKDRPEVLRLLGQSSAG
Ga0247660_10023162	3300024317	Soil	MRLVSESNNNNVIGFIASTVEKLRDELAEMRRQMVTRDTFDAAIISVRGDIEQVQLRLDGIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA
Ga0207662_102738372	3300025918	Switchgrass Rhizosphere	LAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDIL
Ga0207681_108375012	3300025923	Switchgrass Rhizosphere	SKSVAESNNNEMIGFIASTVETISDRLNGIDERLNGIEERMATKAQLEATTIAIRGDIEQIHLQLDTTEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLGHNGS
Ga0207686_1000001789	3300025934	Miscanthus Rhizosphere	MRLVTESNNNNVIGFIASTVESLRDDVASMRQEMATKSDVTILRGDIEQVQLRLDTIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA
Ga0207665_106750252	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VITSESVSESNDNLIGFIASTVEKLSDDVATMRQEMVTKNAFEAGITSVRGDIERVQLRLDGIEHDVSSKFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA
Ga0207711_120819221	3300025941	Switchgrass Rhizosphere	AKPTWPRRDVGHCKLFSLTKVITSKSLAESNDNLIGFIASSVETINDRLNGIEGRMATKAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYLLGKDRPEILRLLGQSSS
Ga0207651_104951842	3300025960	Switchgrass Rhizosphere	VITSESLAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS
Ga0207640_120658931	3300025981	Corn Rhizosphere	VEKLRDDVTSIRAEMVTKSAFEVAITAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS
Ga0207677_117865991	3300026023	Miscanthus Rhizosphere	VITSESLAESNDNLIGFIASSVEKLRDDVTSIRAEMVTKSAFEAAITAVRGDIEQVHLRLNTMEHSVSSRFEHVETELSRLRSAVYLLGKDRPEILRLLGHNGS
Ga0207703_101652313	3300026035	Switchgrass Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEATTTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYVLGKDRPDILRLLGHNGS
Ga0207708_109314352	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	LAESNDNLIGFIASSVETINDRLNGIEERMATKAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRSAVYLL
Ga0207676_104400742	3300026095	Switchgrass Rhizosphere	VITSESLAESNDNLLGFIASSVETISDCLNGIEERMATRAQLEAATTAIRGDIEQVHLRLNTMEHSVSSRFEQVETELSRLRGAVYLLGKDRPDVLRLLGHNGS
Ga0207675_1006531322	3300026118	Switchgrass Rhizosphere	VKPTWRRRETAEGACKLFALTKVITSESLAESNDNLIGFIASSVETITDHLNGIEERMATKAHLESATTAIRGDIEQVHLRLNTMEHSVSSRFELVETELSRLRSAVYLLGKDRPEILRLLGHNGS
Ga0209152_104245132	3300026325	Soil	VIASESVSESNDNLIGFIASTVEKLSDSVATMRDEMVTKNTFEAGITAVRGDIEQVQLRLDSIEHGVSSRFEHVEGEISRLRSAVYLLGKDRPEVLRLLGQSST
Ga0209267_11855012	3300026331	Soil	MWCITPVTGESNQNNLIGFIASTVETMRDDMTTMRSEMVTKSMFDAAITTVRGDIEQVQLRLDTMEHSVASRFEQVEGEISRLRSAVYLLGKDRPEILRLLGQTTS
Ga0209808_12968402	3300026523	Soil	MAESNNNEVIGFIASSVETLRNDIGLIRAEMVTKSAFDAAITAVRGDIEQVHLRLDSVEHSLTSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG
Ga0209056_102206791	3300026538	Soil	MLTKVLASKLVSESNDNLIGFIASTVETIRDEVTTIRGEMVTKTTFEATTTAMRGDIEQVQLRLDSIEHGMSSRFEHVEGELSRLRRAVYLLGKDRPEVLRLLGQAGA
Ga0209577_104803492	3300026552	Soil	MAESNNDELIGFIATTVETIRDRVDGIEVRIATKSDINRLEIATTAIRGDIEQVQLRFDGMEHSITSRFEHVEGELSRLRSAVYLLSKDRPEVLRLLGHNGG
Ga0209814_101632092	3300027873	Populus Rhizosphere	MLRSLPTVAESNNNEVIGCIASAVKTLRDDVASMRSKMVTRGGFDVAITAVRGDIEQVQLRFDSMEHSISSRFEQVEGEISRLRSAVYLLGKDRPDVLRMLGQTSS
Ga0307471_1022678942	3300032180	Hardwood Forest Soil	MRLVTESNNNNVIGFIASTVERLRDDVGSMRQEMATKSDVTILRGDIEQVQLRLDTIEHSMSSRFEHVEGELSRLRSAVYLLGKDRPEVLRLLGQTSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073685

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences