Metagenome Family F073780

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073780
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	54 residues
Representative Sequence	LSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Number of Associated Samples	84
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.86 %
% of genes near scaffold ends (potentially truncated)	95.00 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.500 % of family members)
Environment Ontology (ENVO)	Unclassified (47.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.26% β-sheet: 0.00% Coil/Unstructured: 40.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01925	TauE	22.50
PF00528	BPD_transp_1	11.67
PF01425	Amidase	3.33
PF00892	EamA	2.50
PF02698	DUF218	1.67
PF00005	ABC_tran	1.67
PF04909	Amidohydro_2	1.67
PF12911	OppC_N	1.67
PF03401	TctC	0.83
PF04255	DUF433	0.83
PF04392	ABC_sub_bind	0.83
PF05016	ParE_toxin	0.83
PF16868	NMT1_3	0.83
PF01161	PBP	0.83
PF04964	Flp_Fap	0.83
PF02622	DUF179	0.83
PF00210	Ferritin	0.83
PF13441	Gly-zipper_YMGG	0.83
PF01548	DEDD_Tnp_IS110	0.83
PF13495	Phage_int_SAM_4	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	22.50
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	3.33
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	1.67
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	1.67
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	0.83
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.83
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
All Organisms	root	All Organisms	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
cellular organisms	root	All Organisms → cellular organisms	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.50 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.33 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.33 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.33 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.33 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.33 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.50 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.67 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.83 %
Rhodovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.33 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.67 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.67 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.83 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.83 %
Fodinicurvata	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Fodinicurvata	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.33 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.67 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.67 %
Magnetospirillum marisnigri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum marisnigri	0.83 %
Fodinicurvata sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Fodinicurvata → Fodinicurvata sediminis	0.83 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10203960	Not Available	520	Open in IMG/M
3300001686\|C688J18823_10079014	All Organisms → cellular organisms → Bacteria → Proteobacteria	2282	Open in IMG/M
3300002568\|C688J35102_120529748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1149	Open in IMG/M
3300004114\|Ga0062593_100086883	All Organisms → cellular organisms → Bacteria	2144	Open in IMG/M
3300004156\|Ga0062589_102581271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300004635\|Ga0062388_100994252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	814	Open in IMG/M
3300004643\|Ga0062591_101260841	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300005332\|Ga0066388_104393216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Fodinicurvata → Fodinicurvata sediminis	718	Open in IMG/M
3300005332\|Ga0066388_105357642	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005332\|Ga0066388_107670703	Not Available	541	Open in IMG/M
3300005518\|Ga0070699_100180820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1871	Open in IMG/M
3300005563\|Ga0068855_102490833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300005712\|Ga0070764_10995893	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300005841\|Ga0068863_100316538	All Organisms → cellular organisms → Bacteria → Proteobacteria	1515	Open in IMG/M
3300006028\|Ga0070717_10152267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2001	Open in IMG/M
3300006028\|Ga0070717_10500168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1098	Open in IMG/M
3300006028\|Ga0070717_10879162	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300006176\|Ga0070765_101618923	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300007076\|Ga0075435_101031216	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300009177\|Ga0105248_12471787	Not Available	592	Open in IMG/M
3300009792\|Ga0126374_10488920	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300010043\|Ga0126380_10851929	Not Available	752	Open in IMG/M
3300010043\|Ga0126380_11681756	Not Available	569	Open in IMG/M
3300010046\|Ga0126384_11683840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	599	Open in IMG/M
3300010048\|Ga0126373_10803135	Not Available	1003	Open in IMG/M
3300010361\|Ga0126378_10320460	All Organisms → cellular organisms → Bacteria → Proteobacteria	1656	Open in IMG/M
3300010361\|Ga0126378_10779909	Not Available	1066	Open in IMG/M
3300010361\|Ga0126378_13081792	Not Available	531	Open in IMG/M
3300010362\|Ga0126377_10940672	Not Available	928	Open in IMG/M
3300010376\|Ga0126381_101145382	Not Available	1124	Open in IMG/M
3300010376\|Ga0126381_101548129	Not Available	958	Open in IMG/M
3300010376\|Ga0126381_101789920	Not Available	887	Open in IMG/M
3300010376\|Ga0126381_103612438	Not Available	606	Open in IMG/M
3300010376\|Ga0126381_103734141	Not Available	595	Open in IMG/M
3300010376\|Ga0126381_103842839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	586	Open in IMG/M
3300010376\|Ga0126381_104197567	Not Available	559	Open in IMG/M
3300010863\|Ga0124850_1012827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2667	Open in IMG/M
3300012210\|Ga0137378_10701297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	923	Open in IMG/M
3300012971\|Ga0126369_11214354	Not Available	844	Open in IMG/M
3300014497\|Ga0182008_10782685	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300015242\|Ga0137412_10730397	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300016270\|Ga0182036_10151605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1651	Open in IMG/M
3300016294\|Ga0182041_10304651	Not Available	1322	Open in IMG/M
3300016294\|Ga0182041_12187002	Not Available	517	Open in IMG/M
3300016319\|Ga0182033_10965480	Not Available	757	Open in IMG/M
3300016319\|Ga0182033_11212078	Not Available	676	Open in IMG/M
3300016341\|Ga0182035_11500203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300016371\|Ga0182034_10867938	Not Available	775	Open in IMG/M
3300016387\|Ga0182040_10041890	All Organisms → cellular organisms → Bacteria	2783	Open in IMG/M
3300016422\|Ga0182039_10583853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	975	Open in IMG/M
3300016422\|Ga0182039_11814797	Not Available	559	Open in IMG/M
3300016445\|Ga0182038_10736326	Not Available	861	Open in IMG/M
3300019888\|Ga0193751_1253310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300020583\|Ga0210401_11492695	Not Available	533	Open in IMG/M
3300021178\|Ga0210408_10716834	Not Available	787	Open in IMG/M
3300021477\|Ga0210398_10491086	Not Available	1000	Open in IMG/M
3300021560\|Ga0126371_12325197	Not Available	648	Open in IMG/M
3300021560\|Ga0126371_12420747	Not Available	635	Open in IMG/M
3300021560\|Ga0126371_12552353	Not Available	619	Open in IMG/M
3300021560\|Ga0126371_12929780	Not Available	578	Open in IMG/M
3300021560\|Ga0126371_13024660	Not Available	569	Open in IMG/M
3300025923\|Ga0207681_11542051	Not Available	557	Open in IMG/M
3300025925\|Ga0207650_11675356	Not Available	539	Open in IMG/M
3300025928\|Ga0207700_12006108	Not Available	505	Open in IMG/M
3300027768\|Ga0209772_10159285	Not Available	709	Open in IMG/M
3300027775\|Ga0209177_10310727	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300027874\|Ga0209465_10573476	Not Available	560	Open in IMG/M
3300029943\|Ga0311340_10750560	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300031057\|Ga0170834_104195748	Not Available	518	Open in IMG/M
3300031543\|Ga0318516_10789821	Not Available	536	Open in IMG/M
3300031545\|Ga0318541_10042632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2303	Open in IMG/M
3300031545\|Ga0318541_10642333	Not Available	593	Open in IMG/M
3300031545\|Ga0318541_10817362	Not Available	520	Open in IMG/M
3300031546\|Ga0318538_10492693	Not Available	664	Open in IMG/M
3300031546\|Ga0318538_10717956	Not Available	542	Open in IMG/M
3300031549\|Ga0318571_10287153	Not Available	615	Open in IMG/M
3300031561\|Ga0318528_10085804	All Organisms → cellular organisms → Bacteria → Proteobacteria	1638	Open in IMG/M
3300031561\|Ga0318528_10164343	Not Available	1184	Open in IMG/M
3300031573\|Ga0310915_10497697	Not Available	866	Open in IMG/M
3300031680\|Ga0318574_10800426	Not Available	552	Open in IMG/M
3300031719\|Ga0306917_10027440	All Organisms → cellular organisms → Bacteria	3609	Open in IMG/M
3300031719\|Ga0306917_10736498	Not Available	774	Open in IMG/M
3300031719\|Ga0306917_10838905	Not Available	720	Open in IMG/M
3300031736\|Ga0318501_10317877	Not Available	833	Open in IMG/M
3300031744\|Ga0306918_10374341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1107	Open in IMG/M
3300031744\|Ga0306918_10600820	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300031747\|Ga0318502_10377653	Not Available	841	Open in IMG/M
3300031751\|Ga0318494_10377793	Not Available	821	Open in IMG/M
3300031763\|Ga0318537_10098835	Not Available	1080	Open in IMG/M
3300031763\|Ga0318537_10281321	Not Available	616	Open in IMG/M
3300031771\|Ga0318546_11154911	Not Available	544	Open in IMG/M
3300031781\|Ga0318547_10351486	Not Available	900	Open in IMG/M
3300031794\|Ga0318503_10137390	Not Available	786	Open in IMG/M
3300031805\|Ga0318497_10296450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300031820\|Ga0307473_10661106	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031833\|Ga0310917_10357232	Not Available	992	Open in IMG/M
3300031833\|Ga0310917_10962684	Not Available	573	Open in IMG/M
3300031879\|Ga0306919_11459621	Not Available	515	Open in IMG/M
3300031910\|Ga0306923_10063636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4101	Open in IMG/M
3300031910\|Ga0306923_12102834	Not Available	570	Open in IMG/M
3300031912\|Ga0306921_10558999	Not Available	1326	Open in IMG/M
3300031941\|Ga0310912_10669885	Not Available	805	Open in IMG/M
3300031941\|Ga0310912_11536099	Not Available	501	Open in IMG/M
3300031946\|Ga0310910_10062693	All Organisms → cellular organisms → Bacteria	2658	Open in IMG/M
3300031947\|Ga0310909_10940007	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300031959\|Ga0318530_10087116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum marisnigri	1228	Open in IMG/M
3300031981\|Ga0318531_10426425	Not Available	600	Open in IMG/M
3300032025\|Ga0318507_10007384	All Organisms → cellular organisms → Bacteria	3444	Open in IMG/M
3300032039\|Ga0318559_10519433	Not Available	555	Open in IMG/M
3300032065\|Ga0318513_10045943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1942	Open in IMG/M
3300032074\|Ga0308173_10971803	Not Available	788	Open in IMG/M
3300032091\|Ga0318577_10572243	Not Available	537	Open in IMG/M
3300032160\|Ga0311301_12916390	Not Available	518	Open in IMG/M
3300033289\|Ga0310914_10109085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2393	Open in IMG/M
3300033289\|Ga0310914_10240353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1625	Open in IMG/M
3300033290\|Ga0318519_10416694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	801	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.17%
Host-Associated	Host-Associated	5.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.50%
Plants	Host-Associated → Plants	5.83%
Aquatic	Environmental → Aquatic	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.17%
Freshwater	Environmental → Aquatic → Freshwater	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.67%
Peat	Environmental → Terrestrial → Peat	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.17%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_102039602	3300001471	Forest Soil	QAAAAWVGAQLAQRIGGDQLSRIFAGALALTGAAMLRSSLGA*
C688J18823_100790144	3300001686	Soil	GSINLSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFAGALAVTGVIMLRSSLWP*
C688J35102_1205297483	3300002568	Soil	SMWACIAPAQAVAAWFGARLAQRIAADNLSRVFAGALAVTGVIMLRSSLWP*
Ga0062593_1000868834	3300004114	Soil	GSASLWDGGNLGSINLSMWACIAPAQAVAAWFGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0062589_1025812711	3300004156	Soil	LWDGGNLGSINLSMWACIAPAQAVAAWFGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0062388_1009942523	3300004635	Bog Forest Soil	AVWACIAPTQAGAAWFGARLARHIAGDNLSRVMAGALLATGAMMLRSSLLRG*
Ga0062591_1012608411	3300004643	Soil	AQAVAAWFGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0066388_1043932161	3300005332	Tropical Forest Soil	EVGSIDLTMWACIAPAQAVAAWFGARMAPLISAAHLSRMFAVALSATGITMLYSSLG*
Ga0066388_1053576421	3300005332	Tropical Forest Soil	VSVPATMAAALASQSQHAMQLGSIDLTIWACIAPAQSVAAWFGARLATCVSAEHLNRLFATALGATGLTMLYSSFS*
Ga0066388_1076707031	3300005332	Tropical Forest Soil	VVVSVPATIAAALASKANHPMELGSIDITMWACIAPAQAAAAWLGAQLAPVLSAEHLSRVFATALSVTGVTMLHSSLS*
Ga0070699_1001808205	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VAAWFGARLAQRVAADHLSRVFAGALAVTGIVMLRSSLGWP*
Ga0068855_1024908331	3300005563	Corn Rhizosphere	QAADIGSINLSMWACIAPAQAVAAWFGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0070764_109958933	3300005712	Soil	LWACIAPAQAVAAWVGASLAARTSPRALSRVFSIVLALTGAAMLRTIVVA*
Ga0068863_1003165381	3300005841	Switchgrass Rhizosphere	AVAAWFGARLAQRIAADSLSRVFACVLALTGVVMLRSSLWP*
Ga0070717_101522674	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AWFGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0070717_105001683	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IDITMWACIAPAQAAAAWLGARLAPALSAELLSRVFATALSVTGVTMLHSSLT*
Ga0070717_108791621	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MWACIAPAQAVAAWFGARLAQRIAADSLSRLFAGAMAATGIVMLRSSLGW*
Ga0070765_1016189231	3300006176	Soil	AWFGARLAQRVAADNLSRVFAGALAATGIMMLRSSLGW*
Ga0075435_1010312161	3300007076	Populus Rhizosphere	FGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0105248_124717871	3300009177	Switchgrass Rhizosphere	IAPAQAVAAWFGARLAQRVAADNLSRVFACALALTGAVMLRSSLGWP*
Ga0126374_104889201	3300009792	Tropical Forest Soil	SAQAVAAWFGARLAQRVAADNLSRVFACALALTGVVMLHSSLGWP*
Ga0126380_108519292	3300010043	Tropical Forest Soil	IDITMWACIAPAQAAAAWFGARLAPVVSAELLSRVFATALSVTGVTMLHSSLT*
Ga0126380_116817561	3300010043	Tropical Forest Soil	TMWACIAPAQAGAAWFGARLAPLVSAEHLSRVFATALVVTGVTMLHSSLG*
Ga0126384_116838402	3300010046	Tropical Forest Soil	APAQTIAAWFGARLAQHVAGDNLSRVVAGALITTGAVMFYSSIAGR*
Ga0126373_108031351	3300010048	Tropical Forest Soil	INLPMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALAITGVVMLRSSLGWP*
Ga0126378_103204603	3300010361	Tropical Forest Soil	AVAAWFGARLAQRIAAGNLSRVFACALAITGVVMLRSSLGWP*
Ga0126378_107799091	3300010361	Tropical Forest Soil	FGARLAQRIAADNLSRVFACALALTGVVMLHSSLGWP*
Ga0126378_122075413	3300010361	Tropical Forest Soil	PMQLGSIDLAVWAAIAPAQALTAWFGARLAQRIAAANLSRIMAIALLATGILMLQSSVTSR*
Ga0126378_130817922	3300010361	Tropical Forest Soil	HHAFELGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRVFAVALSATGITMLYSSLG*
Ga0126378_133801002	3300010361	Tropical Forest Soil	AAFASAPSQAADIGSINLSMWVCIAPAQAAAWFGARLAQHVAADNLSRVFACALTLTGVVMLHSSLGWP*
Ga0126377_109406721	3300010362	Tropical Forest Soil	IAPAQAVAAWLGAQLAPVISAEHLSRVFATALLMTGVTMLHSSLG*
Ga0126381_1011453823	3300010376	Tropical Forest Soil	AFEVGSIDLTLWACIAPAQAVAAWFGARVAPFISAAHLSWVLAGALSATGVTMLYSSLG*
Ga0126381_1015481291	3300010376	Tropical Forest Soil	WACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGSP*
Ga0126381_1017899201	3300010376	Tropical Forest Soil	LGARLILTISAEHLSRVFATALLMTGVTMLHSSLG*
Ga0126381_1036124381	3300010376	Tropical Forest Soil	GARLAQRIAADNLSRVFACVLALTGVVMLRSSLGWP*
Ga0126381_1037341411	3300010376	Tropical Forest Soil	LSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACVLALTGVVMLRSSLGWP*
Ga0126381_1038428393	3300010376	Tropical Forest Soil	CIAPAQAVAAWFGARIAPLISAAHLSRVFAVALSATGITMLYSSLG*
Ga0126381_1041975672	3300010376	Tropical Forest Soil	FASAPSQAADIGSINLSMWVCIAPAQAAAWFGARLAQHVAADNLSRVFACALTLTGVVMLHSSLGWP*
Ga0124850_10128271	3300010863	Tropical Forest Soil	QAADIGSINLSMWVCIAPAQAAAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLG
Ga0137378_107012971	3300012210	Vadose Zone Soil	RHATEIGSVDIVLWACIAPAQAVGAWFGAQLAPGIAAESLSRLLSIALGFTGITMLYSSLT*
Ga0126369_112143543	3300012971	Tropical Forest Soil	AADIGSINLSMWACIAPARAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP*
Ga0182008_107826852	3300014497	Rhizosphere	SLWDGGNLGSINLSMWACIAPAQAVAAWFGARLAQHVRAENLSRVFAGALAATGIVMLRSSLGW*
Ga0137412_107303971	3300015242	Vadose Zone Soil	APAQAVAAWFGARMAQRVAADNLSRVFAGALALTGVVMLRSSLGWP*
Ga0182036_101516053	3300016270	Soil	VGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSLV
Ga0182041_103046511	3300016294	Soil	IAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0182041_121870021	3300016294	Soil	NLSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0182033_109654803	3300016319	Soil	APAQAVAAWFGARLAQHIAADNLSRIFACALALTGVVMLRSSLGWP
Ga0182033_112120782	3300016319	Soil	GSIDITMWACIAPAQAAAAWLGARLAPVISAEHLSRIFATVLSVTGVTMLHSSLG
Ga0182035_115002032	3300016341	Soil	LASESHHAFEVGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRVFAVALSATGVTMLYSSLL
Ga0182034_108679381	3300016371	Soil	ARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0182034_116552002	3300016371	Soil	CIAPAQAAAAWFGARLAPVMSAEVLSRVFATALSVTGVTMLHSSLA
Ga0182040_100418901	3300016387	Soil	LASESHHAFEVGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSLV
Ga0182039_105838531	3300016422	Soil	ALASKANHPLEIGSIDITMWACIAPAQAVAAWLGAQLAPAISAEHLSRVFATALLMTGVTMLHSSLG
Ga0182039_118147971	3300016422	Soil	ANHPMELGSIDITMWACIAPAQAAAAWFGARLAPVLSAELLSRVFATALSVTGVTMLHSSLT
Ga0182038_107363261	3300016445	Soil	ASAPSQAADIGSINLSMWACIAPAQAVSAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0193751_12533101	3300019888	Soil	GVGDLGSINLSMWICIAPAQAAAAWVGAELAQRIAADNLSRIFALALAVTGTVMLRSSFA
Ga0210401_114926952	3300020583	Soil	LATKANHPAELGSIDITMWACIAPAQAAAAWLGARLAPVMSAEVLSRVFATALSVTGVTMLHSSLA
Ga0210408_107168341	3300021178	Soil	AWFGARLAQRVAAKNLSRIMAVVLLATGVIMLHSSVAGR
Ga0210398_104910863	3300021477	Soil	SVPATIAAALASKANHPLELGSIDITMWACIAPAQAVAAWFGARLAPAISAEYLSRVFAIALSVTGVIMLHSSLA
Ga0126371_123251971	3300021560	Tropical Forest Soil	AVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGSP
Ga0126371_124207471	3300021560	Tropical Forest Soil	HAFEVGSIDLTMWACIAPAQAIAAWLGARVAPLISAAHLSRVFAVALSATGVTMLYSSLV
Ga0126371_125523532	3300021560	Tropical Forest Soil	GDIGSINLPMWACIAPAQAVAAWFEARLAQRIAADNLSRVFACALAFTGVVMLRSGLGWP
Ga0126371_129297801	3300021560	Tropical Forest Soil	SINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0126371_130246602	3300021560	Tropical Forest Soil	WFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0207681_115420512	3300025923	Switchgrass Rhizosphere	APAQAVAAWFGARLAQRVAADNLSRVFACALALTGAVMLRSSLGWP
Ga0207650_116753562	3300025925	Switchgrass Rhizosphere	AADIGSINLSMWACIAPAQAVAAWFGARLAQRVAADNLSRVFACALALTGAVMLRSSLGW
Ga0207700_120061082	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	NHPLELGSIDITMWICIAPAQAAAAWLGARLAPIMSAELLSRVFATALSVTGVTMLHSSL
Ga0209772_101592852	3300027768	Bog Forest Soil	MWACIAPAQAVAAWFGARLAQRIAADSLSRVLAGVLAVTGVVMLHSSFGWP
Ga0209177_103107272	3300027775	Agricultural Soil	RIDIVVWAAVAPAQAVAAWFGARLAQRIAADNLSRIMAVALLATGAVMLHSSVTGR
Ga0209465_105734762	3300027874	Tropical Forest Soil	VHRPNNIERDVLFELGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRVFAVALSATGITMLYSSLG
Ga0311340_107505601	3300029943	Palsa	LQQSGQLGDINLSIWACIAPSQAVAAWFGAQLTSRISAEQLSRVFALALAITGAAMLHSSLGS
Ga0170834_1041957481	3300031057	Forest Soil	DLTMWACIAPAQAIAAWLGARLAPLVSAEHLSRVFAIALTVTGVTMLHSSLA
Ga0318516_107898211	3300031543	Soil	LTMWACIAPAQAIAAWLGARVAPLISAAHLSRVFAAALSGTGVIMLYSSLV
Ga0318541_100426324	3300031545	Soil	PNQAADIGSINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318541_106423331	3300031545	Soil	CIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318541_108173622	3300031545	Soil	PAQAVAAWFGARVAPLVSAEQLSRVFAIALAVTGVTMLHSSLA
Ga0318538_104926932	3300031546	Soil	AFELGSIDLTMWACIAPAQAVAAWFGARVAPLVSAEHLSRVFAIALTVTGATMLHSSLA
Ga0318538_107179562	3300031546	Soil	DLTMWACIAPAQAIAAWLGARVAPLISAAHLSRVFAAALSGTGVIMLYSSLV
Ga0318571_102871531	3300031549	Soil	AWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318528_100858043	3300031561	Soil	CIAPAQAVAAWFGARLAQRIAADNLSRVFASALALTGVVMLRSSLGWP
Ga0318528_101643431	3300031561	Soil	PSQAADIGSINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0310915_104976971	3300031573	Soil	INLSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318574_108004262	3300031680	Soil	APAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0306917_100274404	3300031719	Soil	GLASESHHAFEVGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSLV
Ga0306917_107364981	3300031719	Soil	SQAADIGSINLSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0306917_108389051	3300031719	Soil	DIGSINLSMWACIAPAQAVSAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318501_103178772	3300031736	Soil	VCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0306918_103743411	3300031744	Soil	SESHHAFEVGSIDLTMWACIAPAQAIAAWLGARVAPLISAAHLSRVFAAALSGTGVIMLYSSLV
Ga0306918_106008201	3300031744	Soil	FASAPSQAADIGSINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTAS
Ga0318502_103776532	3300031747	Soil	LSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318494_103777931	3300031751	Soil	DIGSINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318537_100988352	3300031763	Soil	IGSINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318537_102813212	3300031763	Soil	IAPAQAVAAWFGARVAPLVSAEHLSRVFAIALTVTGATMLHSSLA
Ga0318546_111549111	3300031771	Soil	SMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318547_103514861	3300031781	Soil	HHAFELGSIDLTMWACIAPAQAVAAWFGARVAPLVSAEHLSRVFAIALTVTGATMLHSSL
Ga0318503_101373902	3300031794	Soil	FELGSIDLTMWACIAPAQAVAAWFGARVAPLVSAEHLSRVFAIALTVTGATMLHSSLA
Ga0318497_102964502	3300031805	Soil	FEVGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSLV
Ga0307473_106611061	3300031820	Hardwood Forest Soil	AWFGARLAQHVAAENLSRLFAGALAATGIVMLRSSLGWP
Ga0310917_103572322	3300031833	Soil	AADIGSINLSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGW
Ga0310917_109626841	3300031833	Soil	ELGSIDITMWACIAPAQAAAAWLGARLAPVISAEHLSRIFATALSVTGVTMLHSSLG
Ga0306919_114596211	3300031879	Soil	VPAFASPSQGADIGSINLSMWACIAPAQAVSAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0306923_100636365	3300031910	Soil	HHAFEVGSIDLTMWACIAPAQAVAAWFGARVAPLVSAEQLSRVFAIALAVTGVTMLHSSL
Ga0306923_121028341	3300031910	Soil	PATIAAALASKANHPMELGSIDMTMWACIAPAQAAAAWLGARLAPILSAEHLSRVFATALSVTGVIMLHSSLA
Ga0306921_105589992	3300031912	Soil	AVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0310912_106698851	3300031941	Soil	VAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0310912_115360991	3300031941	Soil	ACIAPAQAVSAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0310910_100626931	3300031946	Soil	IDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSLV
Ga0310910_111961182	3300031946	Soil	FSGPMQLGSIDLAMWASIAPTQALAAWLGARLAQCIDADNLSRIMAVALLGTGAVMLCSSVISL
Ga0310909_109400072	3300031947	Soil	LSMWACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318530_100871161	3300031959	Soil	GSIDLTMWACIAPAQAVAAWFGARVAPLVSAEHLSRVFAIALTVTGATMLHSSLA
Ga0318531_104264251	3300031981	Soil	HHAFEMGSIDLTMWACIAPAQAVAAWFGARVAPLVSAEQLSRVFAIALAVTGVTMLHSSL
Ga0318507_100073841	3300032025	Soil	HHAFEVGSIDLTMWACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSL
Ga0318559_105194331	3300032039	Soil	QAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318513_100459434	3300032065	Soil	WACIAPAQAVAAWFGARIAPLISAAHLSRMFAVALSATGITMLYSSLV
Ga0308173_109718032	3300032074	Soil	SGNLGTINLSMWACIAPAQAVAAWFGAQLAQRIGADSLSRVFAGALAVTGMIMLHSSFGW
Ga0318577_105722431	3300032091	Soil	ADIGSINLSMWACIAPAQAVSAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0311301_129163902	3300032160	Peatlands Soil	LAVWVSIAPAQAAAAWLGVRMARRVAADNLSRIMAAALLATGAVMLHSSLAGR
Ga0310914_101090855	3300033289	Soil	APSQAADIGSINLSMWVCIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0310914_102403531	3300033289	Soil	ACIAPAQAVAAWFGARLAQRIAADNLSRVFACALALTGVVMLRSSLGWP
Ga0318519_104166942	3300033290	Soil	EVGSIDLTMWACIAPAQAIAAWLGARVAPLISAAHLSRVFAAALSGTGVIMLYSSLV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073780

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences