Metagenome / Metatranscriptome Family F073842

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073842
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	40 residues
Representative Sequence	METKTADLLPMEKAARERGLRVVAIGGGTGLSTLLKGLKRF
Number of Associated Samples	102
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.83 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.33 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (28.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.49% β-sheet: 0.00% Coil/Unstructured: 85.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF14559	TPR_19	25.00
PF13798	PCYCGC	14.17
PF07719	TPR_2	10.00
PF00717	Peptidase_S24	5.00
PF01738	DLH	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.17 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.17 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.17 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.33 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	36.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.00 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	36.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	36.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.50 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.83 %
Unclassified	root	N/A	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.50 %
Acidobacteriaceae bacterium TAA 166	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium TAA 166	0.83 %
Unclassified	root	N/A	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002917\|JGI25616J43925_10001409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9453	Open in IMG/M
3300004080\|Ga0062385_11267142	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	506	Open in IMG/M
3300004466\|Ga0068982_1130684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	580	Open in IMG/M
3300004471\|Ga0068965_1261907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	691	Open in IMG/M
3300005175\|Ga0066673_10103945	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1529	Open in IMG/M
3300005332\|Ga0066388_104383020	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	719	Open in IMG/M
3300005437\|Ga0070710_10711671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	710	Open in IMG/M
3300005445\|Ga0070708_100425606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1252	Open in IMG/M
3300005568\|Ga0066703_10778302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	548	Open in IMG/M
3300005712\|Ga0070764_10311842	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	911	Open in IMG/M
3300006028\|Ga0070717_11052950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	741	Open in IMG/M
3300006052\|Ga0075029_100059974	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2218	Open in IMG/M
3300006086\|Ga0075019_10677483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	651	Open in IMG/M
3300006162\|Ga0075030_100954524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	676	Open in IMG/M
3300006175\|Ga0070712_100996098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	725	Open in IMG/M
3300006176\|Ga0070765_100231119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1690	Open in IMG/M
3300006176\|Ga0070765_100725445	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium TAA 166	939	Open in IMG/M
3300009143\|Ga0099792_10203693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1127	Open in IMG/M
3300010343\|Ga0074044_10157269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1519	Open in IMG/M
3300010359\|Ga0126376_12485824	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300010360\|Ga0126372_12330303	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300010376\|Ga0126381_101726812	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300010376\|Ga0126381_103041052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300011120\|Ga0150983_10264066	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300011120\|Ga0150983_11561032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300011120\|Ga0150983_13448012	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300011120\|Ga0150983_13663104	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300011120\|Ga0150983_15387046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300011120\|Ga0150983_15697037	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300012203\|Ga0137399_11557696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300012208\|Ga0137376_10760174	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300012209\|Ga0137379_10674211	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300012209\|Ga0137379_11212942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300012925\|Ga0137419_10678999	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300014487\|Ga0182000_10518616	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300014655\|Ga0181516_10142088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1215	Open in IMG/M
3300016294\|Ga0182041_10938892	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300016750\|Ga0181505_10584198	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1331	Open in IMG/M
3300017955\|Ga0187817_11023846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300017993\|Ga0187823_10299529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300018006\|Ga0187804_10345393	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300018017\|Ga0187872_10358143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300018019\|Ga0187874_10078987	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1463	Open in IMG/M
3300018038\|Ga0187855_10482497	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300018062\|Ga0187784_10385810	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300018062\|Ga0187784_11393499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	555	Open in IMG/M
3300018085\|Ga0187772_11121889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300018086\|Ga0187769_10587253	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300019258\|Ga0181504_1150927	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300019258\|Ga0181504_1211118	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1449	Open in IMG/M
3300019278\|Ga0187800_1138535	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300019278\|Ga0187800_1146383	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300019278\|Ga0187800_1767251	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300019278\|Ga0187800_1884475	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300020006\|Ga0193735_1075002	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300020199\|Ga0179592_10334973	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	668	Open in IMG/M
3300020579\|Ga0210407_11147815	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300020579\|Ga0210407_11308802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300020580\|Ga0210403_10337106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1234	Open in IMG/M
3300020582\|Ga0210395_10583502	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300021170\|Ga0210400_10859207	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300021180\|Ga0210396_10177878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1905	Open in IMG/M
3300021407\|Ga0210383_11569964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300021474\|Ga0210390_10425880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1121	Open in IMG/M
3300021861\|Ga0213853_11346627	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300022508\|Ga0222728_1033597	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300022509\|Ga0242649_1058273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300022518\|Ga0224548_1032116	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300022716\|Ga0242673_1089848	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300022716\|Ga0242673_1126250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300022717\|Ga0242661_1052811	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300023056\|Ga0233357_1008946	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1065	Open in IMG/M
3300025404\|Ga0208936_1005965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1453	Open in IMG/M
3300025434\|Ga0208690_1007669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2403	Open in IMG/M
3300025612\|Ga0208691_1138264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300025906\|Ga0207699_10959388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	632	Open in IMG/M
3300025915\|Ga0207693_10813554	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	720	Open in IMG/M
3300025922\|Ga0207646_10202501	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300025928\|Ga0207700_10478464	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1100	Open in IMG/M
3300026294\|Ga0209839_10053260	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1459	Open in IMG/M
3300026551\|Ga0209648_10406821	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300027035\|Ga0207776_1026715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300027070\|Ga0208365_1010699	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300027669\|Ga0208981_1081395	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300027674\|Ga0209118_1061425	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300027812\|Ga0209656_10059518	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2119	Open in IMG/M
3300027824\|Ga0209040_10233632	Not Available	932	Open in IMG/M
3300027879\|Ga0209169_10313187	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300027895\|Ga0209624_10074294	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2196	Open in IMG/M
3300027898\|Ga0209067_10466726	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300028047\|Ga0209526_10306667	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300028863\|Ga0302218_10219823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300028906\|Ga0308309_10442788	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1118	Open in IMG/M
3300028906\|Ga0308309_11446691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300029908\|Ga0311341_10548576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300029910\|Ga0311369_10994469	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300029956\|Ga0302150_10270867	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300030007\|Ga0311338_11175533	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300030509\|Ga0302183_10372422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300030618\|Ga0311354_11594733	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300030629\|Ga0210268_1171191	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300030730\|Ga0307482_1051570	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300030874\|Ga0265742_1006190	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300031234\|Ga0302325_10122111	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4781	Open in IMG/M
3300031474\|Ga0170818_107172236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300031663\|Ga0307484_112123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300031708\|Ga0310686_103732071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5172	Open in IMG/M
3300031718\|Ga0307474_10284558	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1271	Open in IMG/M
3300031753\|Ga0307477_11039251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300031954\|Ga0306926_13040080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300031962\|Ga0307479_10138163	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2386	Open in IMG/M
3300032261\|Ga0306920_102478897	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	714	Open in IMG/M
3300032515\|Ga0348332_10985561	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300032515\|Ga0348332_12486088	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300032515\|Ga0348332_14680524	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300032783\|Ga0335079_12130801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300032828\|Ga0335080_10493114	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1302	Open in IMG/M
3300032893\|Ga0335069_11182451	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300033004\|Ga0335084_10996783	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300033158\|Ga0335077_11046770	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.50%
Aquatic	Environmental → Aquatic	17.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.50%
Freshwater	Environmental → Aquatic → Freshwater	14.17%
Peat	Environmental → Terrestrial → Peat	7.50%
Sediment	Environmental → Aquatic → Sediment	3.33%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.67%
Loam	Environmental → Terrestrial → Soil → Loam	23.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.00%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.33%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	3.33%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.33%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.50%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.67%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.67%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004466	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 80 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004471	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030629	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030874	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25616J43925_100014091	3300002917	Grasslands Soil	METKPSDLLSSGKTGREHGLRVVAIGGGTGLSTLLKGLKRFVLS
Ga0062385_112671422	3300004080	Bog Forest Soil	MEPRTTELLPSEKEKAARERGLRVVAIGGGTGLSTLLKGL
Ga0068982_11306841	3300004466	Peatlands Soil	METRIADLLSLEKTTRERGLRVVAIGGGTGLSTLLKGLKGFA
Ga0068965_12619072	3300004471	Peatlands Soil	METRIADLLSLEKTTRERGLRVVAIGGGTGLSTLLKGLKGFALT
Ga0066673_101039451	3300005175	Soil	MESKIAEFMAAQQTSQTRGLRVVAIGGGTGLSTLLKGLKRY
Ga0066388_1043830202	3300005332	Tropical Forest Soil	METKSAEFVSRDKSAHASELRVVAIGGGTGLSTLLKGLKRFVQ
Ga0070710_107116712	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MESKIAEFIAAKQTSQARGLRVVAIGGGTGLSTLLKGLKRYVLSTPEAAC
Ga0070708_1004256061	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	METKAAEISSVESAREHGLRVVAIGGGTGLSTLLKGLKLFVLSP
Ga0066703_107783021	3300005568	Soil	MESKTAELMAAQQTSQARGLRVVAIGGGTGLSTLLKGLKRY
Ga0070764_103118422	3300005712	Soil	METRSEILSAGKVARQRPLRVVAIGGGTGLSTLLKGLR
Ga0070717_110529502	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDTKTAELQASEKTARERGLRVVAIGGGTGLSTLLKGLKRF
Ga0075029_1000599741	3300006052	Watersheds	MESKTAEFASREKSARPRELRVVAIGGGTGLSTLLKGLKR
Ga0075019_106774832	3300006086	Watersheds	MQTKTVECPPSDKSARERGLRVVAIGGGTGLSTLLK
Ga0075030_1009545241	3300006162	Watersheds	MEPKTAELLSPEKTVRERGLRVVAIGGGTGLSTLLKGLKRFV
Ga0070712_1009960981	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	METKTAEYGAREKTARAGGLRVVAIGGGTGLSTLL
Ga0070765_1002311191	3300006176	Soil	METRISDLLSLEKATRERGLRVVAIGGGTGLSTLLK
Ga0070765_1007254452	3300006176	Soil	METKTSELLATEKTARERGLRVVAIGGGTGLSTLL
Ga0099792_102036931	3300009143	Vadose Zone Soil	METRIADLLSSEKAVRERGLRVVAIGGGTGLSTLLKGLKLFALTPAEMAT
Ga0074044_101572691	3300010343	Bog Forest Soil	MGTRTADLPSSEKITRERGLRVVAIGGGTGLSTLL
Ga0126376_124858241	3300010359	Tropical Forest Soil	METKAVETVIPDKSAQASGLRVVAIGGGTGLSTLLK
Ga0126372_123303031	3300010360	Tropical Forest Soil	METKDAGCVTREKTARTGDLRVVAIGGGTGLSTLLKGLK
Ga0126381_1017268122	3300010376	Tropical Forest Soil	MESKTVACVTRERTARTGDLRVVAIGGGTGLSTLLKGLKR
Ga0126381_1030410521	3300010376	Tropical Forest Soil	METKASETAIPDKLAQASGLRVVAIGGGTGLSTLLKGLKRFVLTPTEIIEGKSSS
Ga0150983_102640661	3300011120	Forest Soil	METRAAEFATQAKTAQTSGLRVVAIGGGTGLSTLLK
Ga0150983_115610323	3300011120	Forest Soil	MEKTAESLSPEKTALARGLRVVAIGGGTGLSTLLKG
Ga0150983_134480121	3300011120	Forest Soil	METKTSELQATEKTARERGLRVVAIGGGTGLSTLLKGLK
Ga0150983_136631041	3300011120	Forest Soil	MEIKTAELALSERAVRERGLRVVAIGGGTGLSTLLKGLKRF
Ga0150983_153870461	3300011120	Forest Soil	MAPRITELLSLEKAARERGLRVVAIGGGTGLSTLLKG
Ga0150983_156970371	3300011120	Forest Soil	METKTSEFLATEKTARERGLRVVAIGGGTGLSTLLKGLKR
Ga0137399_115576962	3300012203	Vadose Zone Soil	METRIADLLSSEKAARERGLRVVAIGGGTGLSTLLKGLK
Ga0137376_107601742	3300012208	Vadose Zone Soil	MEIKTSELSAPEKAARERGLRVVAIGGGTSLSTLLQGLKRFVLYPG
Ga0137379_106742111	3300012209	Vadose Zone Soil	METKTVESLAPEKRERERGLRVVAIGGGTGLSRYSRD
Ga0137379_112129422	3300012209	Vadose Zone Soil	METKTVESCAPKKTAHELGLRVVAIGGGTGLSTLLKGLKRYV
Ga0137419_106789991	3300012925	Vadose Zone Soil	METETKIADLLSMEKATRERGLHVVAIGGGTGLST
Ga0182000_105186161	3300014487	Soil	MESKTAEFMAAQQASQARGLRVVAIGGGTGLSTLLKGLKRY
Ga0181516_101420883	3300014655	Bog	METKTGTPPITEKSARDCGLRVVAIGGGTGLSTLLKGLKRFVLSP
Ga0182041_109388922	3300016294	Soil	MESKTAEYGTRERSARAGGLRVVAIGGGTGLSTLLGGLKRFVLTPAEA
Ga0181505_105841983	3300016750	Peatland	MGTRTADLPSSEKVTRERGLRVVAIGGGTGLSTLLKGLKR
Ga0187817_110238461	3300017955	Freshwater Sediment	METKTADLLPMEKAARERGLRVVAIGGGTGLSTLLKGLKRF
Ga0187823_102995292	3300017993	Freshwater Sediment	MELKTAELQSMEKTVRERGLRVVAIGGGTGLSTLLKGLKQFVCTA
Ga0187804_103453932	3300018006	Freshwater Sediment	MESKTAELGVREKSAQTGGLRVVAIGGGTGLSTLLKGLKQYVL
Ga0187872_103581431	3300018017	Peatland	METKISDFLTLEKVTRERGLRVVAIGGGTGLSTLLK
Ga0187874_100789873	3300018019	Peatland	METKISDFLTLEKVTRERGLRVVAIGGGTGLSTLLKGLKRF
Ga0187855_104824971	3300018038	Peatland	MEIKTGTSPITEKSARERGLRVVAIGGGTGLSTLLKGLKK
Ga0187784_103858103	3300018062	Tropical Peatland	MGPHSNPSVPESPPSDLRVVAIGGGTGLSTLLKGL
Ga0187784_113934991	3300018062	Tropical Peatland	METKTIDLPAPEKAARERGLRVIAIGGGTGLPTLLKGLKRFVLSPAELSA
Ga0187772_111218892	3300018085	Tropical Peatland	METRIADLSFEKSTRGLGLRAVAIGGGTGLSTLLKGLKRFTLTP
Ga0187769_105872531	3300018086	Tropical Peatland	MKTKTAATLPSKKTVAERGLRVVAIGGGTGLSTLLK
Ga0181504_11509271	3300019258	Peatland	METKTAVSPPLENTARDRGLRVVAIGGGTGLSTLLK
Ga0181504_12111183	3300019258	Peatland	MESKTAELLPVPKATRERGLCVVAIGGGTGLSTLLHGLKHYVRTSSELGA
Ga0187800_11385351	3300019278	Peatland	MKTKTAATLPSKKTAAERGLRVVAIGGGTGLSTLLKGLKRF
Ga0187800_11463832	3300019278	Peatland	MELKMAEARLQGQTGRERGLRVVAIGGGTGLSTLLKGLKRFVL
Ga0187800_17672512	3300019278	Peatland	MESKPAERLSPEQFALEGGLRVVAIGGGTGLSTLLKGLKRFVFWPT
Ga0187800_18844752	3300019278	Peatland	METRIAELPITDKAARERGLRVVAIGGGTGLSTLLKGLKQFALAPTEAKP
Ga0193735_10750022	3300020006	Soil	MEIKTSELSSPEKAARERGLRVVAIGGGTGLSTLLQGLKR
Ga0179592_103349732	3300020199	Vadose Zone Soil	METRIADLLSSEKAVRERGLRVVAIGGGTGLSTLLKGLKLFALTPAEMATA
Ga0210407_111478151	3300020579	Soil	METKTAEPRLPKKTAREPGLRFVAIGGGTGLSTLLKGLKR
Ga0210407_113088021	3300020579	Soil	MEPDIADLLASERTARERGLRVVAIGGGTGLSTLLKG
Ga0210403_103371063	3300020580	Soil	METKISDLLTLEKATRERGLRVVAIGGGTGLSTLLK
Ga0210395_105835022	3300020582	Soil	METRIADLLTLEKAARERGLRVVAIGGGTGLSTLLK
Ga0210400_108592072	3300021170	Soil	MEAKTAELSPPEKATRERGLRVVAIGGGTGLSTLLKGLK
Ga0210396_101778784	3300021180	Soil	METRPAGLETQEKTARTRDLRVVAIGGGTGLSTLL
Ga0210383_115699642	3300021407	Soil	METRAAEFATQAKTAQTSGLRVVAIGGGTGLSTLLKGLKKFVPS
Ga0210390_104258801	3300021474	Soil	METKTDELRLPEMTVLENGLRVVAIGGGTGLSTLLKGLKRFVLWPSEF
Ga0213853_113466271	3300021861	Watersheds	METNQAGYATREKTARTADLRVVAIGGGTGLSTLLK
Ga0222728_10335971	3300022508	Soil	METKIAETKIADLLSMEKATRERGLRVVAIGGGTGLSTLLKGLKRL
Ga0242649_10582732	3300022509	Soil	MEIKTAEPRSPQKTSRESGLRVVAIGGGTGLSTLLK
Ga0224548_10321162	3300022518	Soil	MDTRIAESRPAEDSARERGIRVVAIGGGTGLSTLLKGLK
Ga0242673_10898482	3300022716	Soil	METKTTEPRLPEKTAREPGLRLVAIGGGTGLSTLLKGLKRFVLWPSE
Ga0242673_11262502	3300022716	Soil	METRIADLLSMEKATRERGLRVVAIGGGTGLSTLL
Ga0242661_10528112	3300022717	Soil	METKTAEPRLPKKTAREPGLRFVAIGGGTGLSTLLKGLKRFVLWPSEVRA
Ga0233357_10089463	3300023056	Soil	METRIADRLSSEKATRERALRVVAIGGGTGLSTLLKGLKSFALT
Ga0208936_10059651	3300025404	Peatland	METKTADLLPIEKTTRERGLRVVAIGGGTGLSTLLKG
Ga0208690_10076691	3300025434	Peatland	MEPKIADLVSQQQATRERGLRVVAIGGGTGLSTLL
Ga0208691_11382642	3300025612	Peatland	METKISDFLTLEKVTRERGLRVVAIGGGTGLSTLLKGLK
Ga0207699_109593881	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	METKAAETLTLDKSAQAGGLRVVAIGGGTGLSTLLKGFKRFVLTPAEILEGKSA
Ga0207693_108135542	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	METKTAEYGAREKTARAGGLRVVAIGGGTGLSTLLKGLKRFVLNPAETDC
Ga0207646_102025011	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	METKTADLSSGKTRRERGLRVVAIGGGTGLSTLLK
Ga0207700_104784641	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQSGTADLVTSPQHNAHAPGLRVVAIGGGTGLSTLLKGLKRYV
Ga0209839_100532601	3300026294	Soil	METKTAESLSLEQTARARGLRVVAIGGGTGLSTLLKGLKRFVLYPS
Ga0209648_104068211	3300026551	Grasslands Soil	METKPSDLLSSGKPGRERGLRVVAIGGGTGLSTLLKGLKKFV
Ga0207776_10267151	3300027035	Tropical Forest Soil	METKTAEFQSPEKTARERGLRVVAIGGGTGLSTLLK
Ga0208365_10106993	3300027070	Forest Soil	METKIADLLPMEKATRERGLRVVAIGGGTGLSTLLK
Ga0208981_10813952	3300027669	Forest Soil	METKTADLLSSGKTGRERGLRVVAIGGGTGLSTLLKGLK
Ga0209118_10614253	3300027674	Forest Soil	MEIKTPELSSPERAARERGLRVVAIGGGTGLSTLLKGL
Ga0209656_100595181	3300027812	Bog Forest Soil	MQIKTAEVLAPEKTARERGLRVVAIGGGTGLSTLLKGLKRF
Ga0209040_102336321	3300027824	Bog Forest Soil	MQIKTAEVLAPEKTARERGLRVVAIGGGTGLSTLLKGLK
Ga0209169_103131871	3300027879	Soil	METRSEILSAGKVARQRPLRVVAIGGGTGLSTLLKG
Ga0209624_100742944	3300027895	Forest Soil	MESKISELLSLEKSARERGLRVVAIGGGTGLSTLL
Ga0209067_104667262	3300027898	Watersheds	MQTKTVECPPSDKSARERGLRVVAIGGGTGLSTLLKGLKK
Ga0209526_103066671	3300028047	Forest Soil	MEIKTAEPRSPEKTSRESGLRVVAIGGGTGLSTLLKGLKRFVL
Ga0302218_102198231	3300028863	Palsa	MEPNIADLLSLEKSTRERGLRVVAIGGGTGLSTLLKGLKRFAL
Ga0308309_104427883	3300028906	Soil	METKAAEFATPHTTAQTGGIRVVAIGGGTGLSTLLKGLKGFVPSPSDV
Ga0308309_114466912	3300028906	Soil	MEPDIADLLALERATRERGLRVVAIGGGTGLSTLLKGLK
Ga0311341_105485761	3300029908	Bog	METKIADLLSMQNATRERSLRVVAIGGGTGLSTLLKGLK
Ga0311369_109944692	3300029910	Palsa	MGTKPSELPAADKTARERGLRVVAIGGGTGLSTLLKGLKR
Ga0302150_102708672	3300029956	Bog	METKTADLLPIEKTTRERGLRVVAIGGGTGLSTLLKGLKLFAL
Ga0311338_111755331	3300030007	Palsa	METKTADLLPIEKTTRERGLRVVAIGGGTGLSTLLKGIKLLALSPAE
Ga0302183_103724222	3300030509	Palsa	MEPNIADLLSLEKSTRERGLRVVAIGGGTGLSTLLKGLKR
Ga0311354_115947331	3300030618	Palsa	MEPKTAVPPLEKTGRDHGLRVVAIGGGTGLSTLLK
Ga0210268_11711912	3300030629	Soil	MEIKTGTAPIAEKGARERGLRVVAIGGGTGLSTLL
Ga0307482_10515702	3300030730	Hardwood Forest Soil	MATKPSELVVPDKTGRERGLRVVAIGGGTGLSTLLK
Ga0265742_10061901	3300030874	Soil	MQSKSAEAPAHEHTKTAHERGLRVVAIGGGTGLSTLLKG
Ga0302325_101221116	3300031234	Palsa	MEPNIADLLSLEKSTRERGLRVVAIGGGTGLSTLL
Ga0170818_1071722362	3300031474	Forest Soil	METKMADLIPAERTTIERGLRVVAIGGGTGLSTLLK
Ga0307484_1121232	3300031663	Hardwood Forest Soil	MDSKTVELRPEEKTGRTRGLRVVAIGGGTGLSTLL
Ga0310686_1037320717	3300031708	Soil	MEPDIADLLASERTARERGLRVVAIGGGTGLSTLLKGLK
Ga0307474_102845583	3300031718	Hardwood Forest Soil	METRIADLLSSEKVARERGLHVVAIGGGTGLSTLLKGLKRFALT
Ga0307477_110392512	3300031753	Hardwood Forest Soil	MEIQSAESGPPEKTVRERGLRVVAIGGGTGLSTLLKG
Ga0306926_130400802	3300031954	Soil	METKAAETVTTDKSAQASGLRVVAIGGGTGLSTLLKGLKR
Ga0307479_101381631	3300031962	Hardwood Forest Soil	MEIQSAESGPPEKTVRERGLRVVAIGGGTGLSTLLKGLKRFVL
Ga0306920_1024788971	3300032261	Soil	METKTVACITRERTAGTGNLRVVAIGGGTGLSTLLKGLKRFVLTPAELLSAQPG
Ga0348332_109855612	3300032515	Plant Litter	MEIRIADLVSMEKATRERGLRVVAIGGGTGLSTLLK
Ga0348332_124860881	3300032515	Plant Litter	METKTAAPLPLDKTPRERGLRVVAIGGGTGLSTLLKG
Ga0348332_146805242	3300032515	Plant Litter	METRIADLLSLEKTTRERGLRVVAIGGGTGLSTLLKGLK
Ga0335079_121308011	3300032783	Soil	METKAAETLIPDKSVQASALRVVAIGGGTGLSTLLKGLKRFVPS
Ga0335080_104931141	3300032828	Soil	MESKAAEIPATEKTVRERGLRVVAIGGGTGLSTLLKGLKR
Ga0335069_111824511	3300032893	Soil	METKAAGCATRENPARAGDLRVVAIGGGTGLSTLLKGLK
Ga0335084_109967832	3300033004	Soil	MDSKAAEITSLDKTARERGLRVVAIGGGTGLSTLLKGLKRFVLS
Ga0335077_110467701	3300033158	Soil	METKAAQFTLRQRTALTGGLKVVAIGGGTGLSTLLKGLKRFVISPSDVIASKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073842

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences