Metagenome / Metatranscriptome Family F073845

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073845
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	86 residues
Representative Sequence	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGASEVRVDDCVLRLVVDHAHRLLEVIHIEHREAVAPAWAGAL
Number of Associated Samples	89
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	11.67 %
% of genes near scaffold ends (potentially truncated)	25.83 %
% of genes from short scaffolds (< 2000 bps)	79.17 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.667 % of family members)
Environment Ontology (ENVO)	Unclassified (34.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.01% β-sheet: 22.12% Coil/Unstructured: 54.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF07766	LETM1_RBD	38.33
PF00313	CSD	33.33
PF09397	FtsK_gamma	13.33
PF01346	FKBP_N	1.67
PF00436	SSB	0.83
PF00154	RecA	0.83
PF14849	YidC_periplas	0.83
PF13491	FtsK_4TM	0.83
PF01118	Semialdhyde_dh	0.83
PF13490	zf-HC2	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase	Posttranslational modification, protein turnover, chaperones [O]	1.67
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.83
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.83
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.67 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.67 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.67 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	72.50 %
Unclassified	root	N/A	3.33 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	68.33 %
Unclassified	root	N/A	3.33 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	68.33 %
Unclassified	root	N/A	3.33 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	43.33 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	23.33 %
Unclassified	root	N/A	3.33 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.33 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	11.67 %
Unclassified	root	N/A	3.33 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.33 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	6.67 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	3.33 %
Unclassified	root	N/A	3.33 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	1.67 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.33 %
Unclassified	root	N/A	3.33 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	1.67 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1.67 %
Pseudomonas syringae group genomosp. 1	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1	0.83 %
Corallococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.33 %
Unclassified	root	N/A	3.33 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	1.67 %
Anaeromyxobacter dehalogenans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	0.83 %
Corallococcus coralloides	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → Corallococcus coralloides	0.83 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	0.83 %
unclassified Anaeromyxobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.33 %
Unclassified	root	N/A	3.33 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	1.67 %
Anaeromyxobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp.	0.83 %
Anaeromyxobacter dehalogenans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	0.83 %
Corallococcus coralloides	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → Corallococcus coralloides	0.83 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001160\|JGI12654J13325_1011270	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	630	Open in IMG/M
3300002245\|JGIcombinedJ26739_100013321	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6817	Open in IMG/M
3300002568\|C688J35102_119512356	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300002568\|C688J35102_120812437	All Organisms → cellular organisms → Bacteria	1659	Open in IMG/M
3300005167\|Ga0066672_10312514	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300005175\|Ga0066673_10315304	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300005175\|Ga0066673_10340082	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	876	Open in IMG/M
3300005179\|Ga0066684_10127573	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1591	Open in IMG/M
3300005179\|Ga0066684_10597676	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741	Open in IMG/M
3300005334\|Ga0068869_101141819	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005345\|Ga0070692_11342000	Not Available	514	Open in IMG/M
3300005435\|Ga0070714_101386245	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	686	Open in IMG/M
3300005445\|Ga0070708_100181723	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1966	Open in IMG/M
3300005450\|Ga0066682_10122456	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300005451\|Ga0066681_10205643	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1180	Open in IMG/M
3300005451\|Ga0066681_10443578	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	797	Open in IMG/M
3300005518\|Ga0070699_100350758	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300005536\|Ga0070697_100020677	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	5209	Open in IMG/M
3300005537\|Ga0070730_10855776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	571	Open in IMG/M
3300005549\|Ga0070704_101948472	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545	Open in IMG/M
3300005561\|Ga0066699_10415623	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	963	Open in IMG/M
3300005576\|Ga0066708_10075264	All Organisms → cellular organisms → Bacteria	1954	Open in IMG/M
3300005614\|Ga0068856_101739486	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005646\|Ga0075040_1891771	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	921	Open in IMG/M
3300005764\|Ga0066903_102826671	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	942	Open in IMG/M
3300005895\|Ga0075277_1004096	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	1756	Open in IMG/M
3300005944\|Ga0066788_10130755	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300006032\|Ga0066696_10108146	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1682	Open in IMG/M
3300006175\|Ga0070712_100716713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	854	Open in IMG/M
3300006358\|Ga0068871_100281088	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1456	Open in IMG/M
3300006852\|Ga0075433_10153803	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	2046	Open in IMG/M
3300006881\|Ga0068865_101298987	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300006903\|Ga0075426_11121203	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006954\|Ga0079219_10230052	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300007076\|Ga0075435_101520076	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300007255\|Ga0099791_10013951	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3399	Open in IMG/M
3300007255\|Ga0099791_10031999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2311	Open in IMG/M
3300007255\|Ga0099791_10079229	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300007258\|Ga0099793_10648813	Not Available	531	Open in IMG/M
3300007265\|Ga0099794_10143532	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300007265\|Ga0099794_10632557	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568	Open in IMG/M
3300007788\|Ga0099795_10042167	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1628	Open in IMG/M
3300009012\|Ga0066710_100199885	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300009098\|Ga0105245_10805743	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	977	Open in IMG/M
3300009143\|Ga0099792_10141088	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → Corallococcus coralloides	1317	Open in IMG/M
3300009143\|Ga0099792_10950786	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	571	Open in IMG/M
3300009147\|Ga0114129_11570379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	806	Open in IMG/M
3300009651\|Ga0105859_1097058	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp.	790	Open in IMG/M
3300010046\|Ga0126384_10845371	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	823	Open in IMG/M
3300010159\|Ga0099796_10096883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1104	Open in IMG/M
3300010159\|Ga0099796_10155832	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	902	Open in IMG/M
3300010373\|Ga0134128_10823652	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1028	Open in IMG/M
3300010397\|Ga0134124_12469648	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	562	Open in IMG/M
3300010403\|Ga0134123_10420144	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300010880\|Ga0126350_10658749	All Organisms → cellular organisms → Bacteria	9330	Open in IMG/M
3300011120\|Ga0150983_15292104	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012202\|Ga0137363_10002159	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	11637	Open in IMG/M
3300012202\|Ga0137363_10049657	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3001	Open in IMG/M
3300012205\|Ga0137362_10139381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2067	Open in IMG/M
3300012205\|Ga0137362_11511446	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300012212\|Ga0150985_102230667	Not Available	539	Open in IMG/M
3300012212\|Ga0150985_105186717	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300012212\|Ga0150985_106768418	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1110	Open in IMG/M
3300012212\|Ga0150985_117190311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	553	Open in IMG/M
3300012212\|Ga0150985_122984563	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300012469\|Ga0150984_100389185	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300012469\|Ga0150984_105743566	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300012469\|Ga0150984_106879922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	599	Open in IMG/M
3300012469\|Ga0150984_116337434	All Organisms → cellular organisms → Bacteria → Proteobacteria	990	Open in IMG/M
3300012582\|Ga0137358_10067747	All Organisms → cellular organisms → Bacteria	2395	Open in IMG/M
3300012582\|Ga0137358_10370817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	969	Open in IMG/M
3300012683\|Ga0137398_10001794	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	8936	Open in IMG/M
3300012683\|Ga0137398_10553551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	793	Open in IMG/M
3300012685\|Ga0137397_10028282	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3978	Open in IMG/M
3300012685\|Ga0137397_10036439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3518	Open in IMG/M
3300012918\|Ga0137396_11221213	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300012922\|Ga0137394_10162186	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1905	Open in IMG/M
3300012922\|Ga0137394_10986472	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	700	Open in IMG/M
3300012922\|Ga0137394_11029611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	683	Open in IMG/M
3300012922\|Ga0137394_11453208	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545	Open in IMG/M
3300012923\|Ga0137359_10183148	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300012923\|Ga0137359_10538683	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1028	Open in IMG/M
3300012924\|Ga0137413_11359065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	572	Open in IMG/M
3300012927\|Ga0137416_10349299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1240	Open in IMG/M
3300012929\|Ga0137404_10181196	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1773	Open in IMG/M
3300012929\|Ga0137404_10472246	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1115	Open in IMG/M
3300012930\|Ga0137407_11154194	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012944\|Ga0137410_10132681	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1881	Open in IMG/M
3300012944\|Ga0137410_10226430	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1457	Open in IMG/M
3300015171\|Ga0167648_1049318	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	970	Open in IMG/M
3300015264\|Ga0137403_10212635	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1860	Open in IMG/M
3300018433\|Ga0066667_10167563	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1573	Open in IMG/M
3300018433\|Ga0066667_11478218	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300018468\|Ga0066662_10484398	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1120	Open in IMG/M
3300019789\|Ga0137408_1234906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	4111	Open in IMG/M
3300019789\|Ga0137408_1259102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1607	Open in IMG/M
3300021478\|Ga0210402_11493293	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300024330\|Ga0137417_1300293	Not Available	2309	Open in IMG/M
3300026023\|Ga0207677_10101718	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2117	Open in IMG/M
3300026274\|Ga0209888_1035729	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	963	Open in IMG/M
3300026285\|Ga0209438_1005949	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	4142	Open in IMG/M
3300026312\|Ga0209153_1043173	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300026323\|Ga0209472_1319085	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300026557\|Ga0179587_10008272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	5337	Open in IMG/M
3300027587\|Ga0209220_1099667	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300027643\|Ga0209076_1009118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2504	Open in IMG/M
3300027651\|Ga0209217_1001007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	8707	Open in IMG/M
3300027655\|Ga0209388_1099752	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	833	Open in IMG/M
3300027663\|Ga0208990_1010540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3079	Open in IMG/M
3300027678\|Ga0209011_1006107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	4124	Open in IMG/M
3300027903\|Ga0209488_10061484	All Organisms → cellular organisms → Bacteria	2775	Open in IMG/M
3300027903\|Ga0209488_10288750	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300028784\|Ga0307282_10372321	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	691	Open in IMG/M
3300031047\|Ga0073995_12118469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	560	Open in IMG/M
3300031720\|Ga0307469_10828570	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	851	Open in IMG/M
3300031820\|Ga0307473_10127549	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300032074\|Ga0308173_10898632	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300032180\|Ga0307471_100175781	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2104	Open in IMG/M
3300032180\|Ga0307471_102156141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	701	Open in IMG/M
3300032783\|Ga0335079_10544999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1231	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.17%
Host-Associated	Host-Associated	15.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.17%
Plants	Host-Associated → Plants	15.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.50%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.33%
Loam	Environmental → Terrestrial → Soil → Loam	15.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.33%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.33%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.17%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.33%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.50%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005646	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_057 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005895	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026274	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059 (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300031047	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12654J13325_10112702	3300001160	Forest Soil	LLQTLAPHVLLRLGRALADLAEALASGEEAVASEVRVEDCVLRLVVDHAQRLLEVIHIEHREAVAPAWAGAL*
JGIcombinedJ26739_1000133213	3300002245	Forest Soil	MSYRIQVHPEASSLLQTLAPHVLLRLGRALADLAEALASGEEAVASEVRVEDCVLRLVVDHAQRLLEVIHIEHREAVAPAWAGAL*
C688J35102_1195123562	3300002568	Soil	MSYRIQIQPEAGTLLRTLAPHTVLRLGRALAELADSIDAGVSPEESALRVDDCVLQFVVNHAHRLVEVVHVEQREEAEAPYAAAATPA*
C688J35102_1208124373	3300002568	Soil	MSYRIHVQPEAGSLLRTLAPHVVLRLGRALAELAEAIASGEQAESSELHIDDCIVRFAVNHANRLLEVVHVAQREEPAYAAAAP*
Ga0066672_103125142	3300005167	Soil	MSYRIHVHPEAGSLLRTFAPHVILRLGRALADLAAALAEGSEPEASELLVDDCVMRFAVNHPQRLLEVVQVEQRDAAAAPP*
Ga0066673_103153043	3300005175	Soil	GLCRSGGRRQICRTMSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDIGASEVRVEDCVLRLVVDHAQRLLEVIRIEQREAVAPAWAGAL*
Ga0066673_103400822	3300005175	Soil	MSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELQVDDCVMRFVVDHAERLLRVVHVEQRGALAPAYASEASV*
Ga0066684_101275732	3300005179	Soil	VSYRIQVQPEAGSLLRTFAPHVVLRLGRALGDLAAALADGEQPDGTELHVDDCVMQFVVNHAQRLLEVVHVEQREALQPAWAPADVPA*
Ga0066684_105976761	3300005179	Soil	MSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELQVDDCVMRFVVDHAERLLRVVHVEQRGALAPAYASEATV*
Ga0068869_1011418191	3300005334	Miscanthus Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGAGADEPHELEVDNCVLRFVIDHAQRLLEVIQIELREPLAAAYTDSHA*
Ga0070692_113420001	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGAGADEPHELQVDNCVLRFVIDHAQRLLEVIQIELREPLAAAYTDSHA*
Ga0070714_1013862452	3300005435	Agricultural Soil	MSYRIQIQPEAGSLLRTLAPHTVLRLGRALADLADAIAAGETPEETELRIDDCVLQFVVNHAHRLVEVVHVEQREEAEPSYAAAATTV*
Ga0070708_1001817231	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSYRIQVHPDAGALLRTLAPHVVLRLGRALADLAESLAAGEDPGPGELRVDGCVMQFAIDHAHRLLEVIHVE
Ga0066682_101224562	3300005450	Soil	LLQTLAPHVLLRLGRALADLAEALASGEDIGASEVRVEDCVLRLVVDHAQRLLEVIRIEQREAVAPA
Ga0066681_102056433	3300005451	Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDIGASEVRVEDCVLRLVVDHAQRLLEVIRIEQREAVAPAWAGAL*
Ga0066681_104435782	3300005451	Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGDEIGPGELRVDNCVLQLAVDHAHRMLEVIHVELSEPLAAHPAAAIGAS*
Ga0070699_1003507582	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSYRIQVHPDAGALLRTLAPHVVLRLGRALADLAESLAAGEDPGPGELRVDGCVMQFAIDHAHRLLEVIHVEQREPAVPAYAAEPAPA*
Ga0070697_1000206773	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSYRIQVHPDAGALLRTLAPHVVLRLGRALADLAESLAAGEDPGPGELRVDGCVMQFAIDHANRLLEVIHVEQREPAVPTYAAEPAPA*
Ga0070730_108557761	3300005537	Surface Soil	MSYRIQVHPEAGSLLRTLAPHLVLRMGHALAELAEALSAGDDPESDEVRVEDCALQLAVDHAERLLRVIHIEQRESLAP
Ga0070704_1019484721	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSYRIQVHPEVGSLLRTLKPHVVLRLGRALAELAESLTAGNDQDQGEVRVDNCVMQFAVDHAHRLLEVIHIEQSEPAAAYAPEPAHI*
Ga0066699_104156231	3300005561	Soil	MSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELHVDDCVMRFVVDHAEQLLRVVHVEQRAPLAPAYASEVTV*
Ga0066708_100752643	3300005576	Soil	MSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELQVDDCVMRFVVDHAERLLRVVHVEQRGA
Ga0068856_1017394861	3300005614	Corn Rhizosphere	RIQIQPEAGSLLRTLAPHTVLRLGRALADLADAIAAGETPEETELRIDDCVLQFVVNHAHRLVEVVHVEQREEAEPSYAAAATTV*
Ga0075040_18917712	3300005646	Permafrost Soil	MSYRIQVHPEAGSLLRTLAPHVVLRLGHSLAELAEAISIGDDPHGDELRIDDCVMQFAIDHAERLVRVTHIEQREALSPLFTEAPAHA*
Ga0066903_1028266712	3300005764	Tropical Forest Soil	MSYRIQVHPEAGSLLRTFAPHVVLRLGRALADLAEALSSGEDAGGDELRVEDCVMQFVIDHAEHLLRVVHVEQRALACAATADALL*
Ga0075277_10040962	3300005895	Rice Paddy Soil	MSYRIQVQPEAGTLLRTLAPHTVLRLGRALADLADTIADGETPEQSELRVDDCVLQFVVNHAHRLVEVVHVEQRDEAAAPYAAAAPTA*
Ga0066788_101307551	3300005944	Soil	SYRIQVHPEAGSLLRTLAPHVVLRLGHSLAELAEAISIGDDPHGDELRIDDCVMQLAIDHAERLVRVTHIEQREALSPLFTEAPAHA*
Ga0066696_101081463	3300006032	Soil	ARRIGNFYGMSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELQVDDCVMRFVVDHAERLLRVVHVEQRGALAPAYASEATV*
Ga0070712_1007167132	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDPGEGEVRVDNCVMQFAVDHAHRLLEVIHIEQSEPAAAYAPAPAQV*
Ga0068871_1002810882	3300006358	Miscanthus Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLGLGRALAELAETIGAGADEPHELQVDTCVLRFVIDHARRLLEVIQIELREPLVTAYADSHA*
Ga0075433_101538033	3300006852	Populus Rhizosphere	MSYRIQVCPEAGSLLRTLAPHVVLRLGRALADLAESLAAGEDVERGELRIDDCVLRFAVDHAHRLLEVVHVEQHEAPLAYAAEPAA*
Ga0068865_1012989871	3300006881	Miscanthus Rhizosphere	PDAGTLLRTLKPHVVLGLGRALAELAETIGAGADEPHELQVDTCVLRFVIDHARRLLEVIQIELREPLVTAYADSHA*
Ga0075426_111212031	3300006903	Populus Rhizosphere	LVARVFRQGGGRRQIRQTMSYRIQVRPEAGSLLRTLAPYVVLQLGRALAQLAESLAAGEDPGPGELRVDGCVMQFAIDHAHRLLEVVHVEQREPVAAAHAAEPAPA*
Ga0079219_102300521	3300006954	Agricultural Soil	MSYRIQIQPEAGSLLRTLAPHTVLRLGRALADLADAIAAGETPEETELRIDDCVLQFVVNHAHRLVEVVHVEQREEAEP
Ga0075435_1015200761	3300007076	Populus Rhizosphere	MSYRIQVHPDAGALLRTLAPHVVLHLGRALADLAESLAAGEDPGPGELRVDGCVMQFAIDHAHRLLEVIHVEQREPAVPAYAAEPAPA*
Ga0099791_100139513	3300007255	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGASEVRVDDCVLRLVVDHAHRLLEVIRIEQREAVAPAWAGTL*
Ga0099791_100319992	3300007255	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGAIEVRVDDCVMRLVVDHAHRLLEVIRVEHRDAVAPALAGAL*
Ga0099791_100792292	3300007255	Vadose Zone Soil	MSYRIQVRPEAGSLLRTLAPYVVLRLGRALAQLAESLAAGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVAAAYAAEPAP*
Ga0099793_106488131	3300007258	Vadose Zone Soil	MGYRIQVHPEAGSLLQTLAPHVLLRLGRALAELAEALASGEEDGASEVRVDDCVLRLVVDHAQRLLEVIRIEHREAVEPAWAGAL*
Ga0099794_101435322	3300007265	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGQALADLAEALASGEEFVASEVRVDDCVLRLVVDHAQRLLEVIRIEHSEAVAPAWAGAL*
Ga0099794_106325572	3300007265	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGASEVRVDDCVLRLVVDHAHRLLEVIRIEQREAVAPAWAG
Ga0099795_100421673	3300007788	Vadose Zone Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDQGQGEVRVDNCVMQFVVDHAHRLLEVIHIEQSEPAAAYAPAPAHV*
Ga0066710_1001998852	3300009012	Grasslands Soil	MSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELQVDDCVMRFVVDHAERLLRVVHVEQRGALAPAYASEATV
Ga0105245_108057432	3300009098	Miscanthus Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGAGADEPHELQVDTCVLRFVNDHARRLLEVIQIELREPLAAAYTDSHA*
Ga0099792_101410883	3300009143	Vadose Zone Soil	TMSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIRIEHRDAVAPAWAGAL*
Ga0099792_109507861	3300009143	Vadose Zone Soil	MSYRIQVHPDAGVLLRTLAPHVVLRLGRALAQLAESLASGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVAPAYATEPPPA*
Ga0114129_115703792	3300009147	Populus Rhizosphere	MSYRIQVRPEAGSLLRTLAPYIVLQLGRALAQLAESLAAGEDPGPGELRVDGCVMQFAIDHAHRLLEVVHVEQREPVAAAHAAEPAPA*
Ga0105859_10970582	3300009651	Permafrost Soil	MSYRIQVHPEAGSLLRTLAPHVVLRLGHSLAELAELAEAISIGDDPHGDELRIDDCVMQFAIDHAERLVRVTHIEQREALSPLFTEAPAHA*
Ga0126384_108453712	3300010046	Tropical Forest Soil	MSYRIHVRPEAGSLLRTLKPHVVLRLGRALAELAESLTAGDQVGPAEVRVDNCVMRFVVDHAHRLLEVIHVEQAEPIAGYAAAAPAAI*
Ga0099796_100968831	3300010159	Vadose Zone Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDQGQGEVRVDNCVMQFVVDHAHRLLEVIHIEQSEPAAAYATAPAQL*
Ga0099796_101558322	3300010159	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIRIEHRDAVAPAWAGAL*
Ga0134128_108236521	3300010373	Terrestrial Soil	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGAGADEPHELQVDNCVLRFVIDHAQRLLEVIQIELREPLVTAYADSHA*
Ga0134124_124696482	3300010397	Terrestrial Soil	PMSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDQDQGEVRVDNCVMQFAVDHAHRLLEVIHIEQSEPAVAYAPAPAHV*
Ga0134123_104201442	3300010403	Terrestrial Soil	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGAGADEPHELQVDTCVLRFVIDHARRLLEVIQIELREPLAAAYTDSHA*
Ga0126350_106587493	3300010880	Boreal Forest Soil	MSYRIQVHPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEESDESELRVEDCVMRFVVDHAERLLRVVQVEQRDGLAPAYVAYAPAPA*
Ga0150983_152921041	3300011120	Forest Soil	RIQVHPEAGSLLRSFAPHVVLRLGRALAELADALSGGEESDAEELRIEDCVVRFIVDRAEQLLRVMHVEQRSVLIPVYEA*
Ga0137363_100021593	3300012202	Vadose Zone Soil	MENWLAGPSVRGPAGENIRQTMSYRIQVRPEAGSLLRTLAPYVVLRLGRALAQLAESLAAGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPLAPAYAAEPPPA*
Ga0137363_100496573	3300012202	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALATGEEAGASEVRVDDCVMRLVVDHAHRLLEVIGIEHREAVAPAWAGAL*
Ga0137362_101393813	3300012205	Vadose Zone Soil	MSYRIQVRPEAGSLLRTLAPYVVLRLGRALAQLAESLAAGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVAPAYATEPPPA*
Ga0137362_115114462	3300012205	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGASEVRVDDCVMRLVVDHAHRLLEVIRIEHRDAVAPAWAGAL*
Ga0150985_1022306672	3300012212	Avena Fatua Rhizosphere	MFVGMSYRIQVRPEAGILLRTLAPHVVLRIGRALADLAEAIATGEDAEGNQLQIEDCVVQFMVDPARRLLEVLHVERHEAVAYAPAENGAHP*
Ga0150985_1051867172	3300012212	Avena Fatua Rhizosphere	QPEAGTLLRTLAPHTVLRLGRALAELADSIDAGVSPEESALRVDDCVLQFVVNHAHRLVEVVHVEQREEAEAPYAAAATPA*
Ga0150985_1067684182	3300012212	Avena Fatua Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGTGGDEPHEVQVDNCVLRFVIDHAQRLLEVIQIELREPLAAAYADSHA*
Ga0150985_1171903112	3300012212	Avena Fatua Rhizosphere	IQIQPEAGTLLRTLPPHTVLRLGRALADLADSIESGESPDESELRVDDCVLQFVVNHAHRLVEVVHVEQRDDAQPPYAAAATTV*
Ga0150985_1229845632	3300012212	Avena Fatua Rhizosphere	PEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDQGQGEVRVDNCVMQFVVDHAHRLLEVIHIEQSEPAAAYAPAPAQL*
Ga0150984_1003891852	3300012469	Avena Fatua Rhizosphere	MFVGMSYRIQVRPEAGILLRTLAPHVVLRIGRALADLAEAIATGEDAEGNQLQIEDCVVQFMVDHAHRLLEVLHVERHEAVAYAPAENGAHP*
Ga0150984_1057435661	3300012469	Avena Fatua Rhizosphere	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGDEIGPGELRVDNCVLQLAVDHAHRMLEVIHVEQSEPLAAHPAAAIAAS*
Ga0150984_1068799221	3300012469	Avena Fatua Rhizosphere	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDQGQGEVRVDNCVMQFVVDHAHRLLEVIHIEQSEPAAAYAPAPAQL*
Ga0150984_1163374342	3300012469	Avena Fatua Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGTGGDEPHEVQVDNCVLRFVIDHAQRLLEVIQIELREPLVAAYADSHA*
Ga0137358_100677472	3300012582	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEETGASEVRVDDCVMRLVVDHAHRLLEVIGIEHRDAVAPAWAGAL*
Ga0137358_103708171	3300012582	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALATGEEAGASEVRVDDCVMRLFVDHAHRLLEVIGIEHREAVAPAWAGAL*
Ga0137398_100017948	3300012683	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLASHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIRIEHRDAVAPAWAGAL*
Ga0137398_105535512	3300012683	Vadose Zone Soil	MENWLAGPSVRGPAGENIRQTMSYRIQVRPEAGPLLRTLAPYVVLRLGRALAELAESLAAGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVAPAYATEPPPA*
Ga0137397_100282822	3300012685	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGASEVRVDDCVMRLVVDHAQRLLEVIRIEHRDGVAPAWAGAL*
Ga0137397_100364392	3300012685	Vadose Zone Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTADDEAGPGELRVDNCVMRFVVDHAHRLLELIQVEQAEPNAAYAAAAPAI*
Ga0137396_112212131	3300012918	Vadose Zone Soil	MSYRIQVRPEAGPLLRTLAPYVVLRLGRALAELAESLAAGEDPGPGELQVDGCIMQFAIDHAHRLLEVVHVEQREPVAAAYAAGPAPA*
Ga0137394_101621862	3300012922	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEETGASEVRVDDCVMRLVVDHAQRLLEVIRIEHRDGVAPAWAGAQ*
Ga0137394_109864722	3300012922	Vadose Zone Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTADDEAGPGELRVDNCVMRFVVDHAHRLLEVIQVEQAEPVAAYAAAAPGT*
Ga0137394_110296111	3300012922	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGAIEVRVDDCVMRLVVDHAHRLLEVIRVEHRDAV
Ga0137394_114532082	3300012922	Vadose Zone Soil	MSYRIQVRPEAGPLLRTLAPYVVLRLGRALAELAESLAAGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVVPAYAVEPAPA*
Ga0137359_101831481	3300012923	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALATGEEAGASEVRVDDCVMRLVVDHAHRLLEVIGIEHRDAVAPALAGAL*
Ga0137359_105386832	3300012923	Vadose Zone Soil	MSYRIQVRPEAGSLLRTLAPYVVLRLGRALAELAESLAAGEDPGPGELQVDGCVMQFAIDHAHRLLELVHVEQREPVAPAYAAEPAPA*
Ga0137413_113590651	3300012924	Vadose Zone Soil	QICWTMSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIRIEHRDAVAPAWAGAL*
Ga0137416_103492992	3300012927	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGALEVRVDDCVMRLVVDHAHRLLEVIRVEHRDAVAPALAGAL*
Ga0137404_101811962	3300012929	Vadose Zone Soil	MSYRIQVRPEAGSLLRTLAPHVVLRLGRALAQLAESLATGEDPGPGELHVDGCIMQFAIDHAHRLLEVVHVEQREPVAAAYAAEPAPA*
Ga0137404_104722461	3300012929	Vadose Zone Soil	QTLAPHVLLRLGRALADLAEALASGEEAGAIEVRVDDCVMRLVVDHAHRLLEVIRVEHRDAVAPALAGAL*
Ga0137407_111541942	3300012930	Vadose Zone Soil	MSYRIQVRPEAGSLLRTLAPHVVLRLGRALAQLAESLATGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVAAAYAAGPAPA*
Ga0137410_101326812	3300012944	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIGIEHRDAVAPAWAGAL*
Ga0137410_102264303	3300012944	Vadose Zone Soil	RIQVRPEAGSLLRTLAPYVVLRLGRALAQLAESLAAGEDPGPGELHVDGCVMQFAIDHAHRLLEVVHVEQREPVAAAYAAEPAP*
Ga0167648_10493181	3300015171	Glacier Forefield Soil	FMSYRIQVHPEAGSLLRTFAPHVVLRLGRALADLAESITTAAGAGENELRVEDCVLQLVVDHAERLLRVIHVEQCPTMIPLYASAEAMA*
Ga0137403_102126353	3300015264	Vadose Zone Soil	MSYRIQVRPEAGSLLRTLAPHVVLRLGRALAQLAESLASGEDPGPGELHVDGCIMQFAIDHAHRLLEVVHVEQREPVAAAYAAEPAPA*
Ga0066667_101675632	3300018433	Grasslands Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDIGASEVRVEDCVLRLVVDHAQRLLEVIRIEQREAVAPAWAGAL
Ga0066667_114782182	3300018433	Grasslands Soil	MSYRIQVNPEAGSLLRTFAPHVVLRLGRALAELAEAIASGEDAEENELQVDDCVMRFVVDHAERLLRVVHVEQRGALAPA
Ga0066662_104843982	3300018468	Grasslands Soil	VSYRIQVQPEAGSLLRTFAPHVVLRLGRALGDLAAALADGEQPDGTELHVDDCGMQFVVNHAQRLLEVVHVEQREALQPAWAPADVPA
Ga0137408_12349063	3300019789	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGASEVRVDDCVLRLVVDHAHRLLEVIRIEQREAVAPAWAGTL
Ga0137408_12591022	3300019789	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGAIEVRVDDCVMRLVVDHAHRLLEVIRVEHRDAVAPALAGAL
Ga0210402_114932932	3300021478	Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAADEAGPGELRVDNCVMRFVVDHAQRLLEVIQVEQAEPIAAYTAAAPAI
Ga0137417_13002934	3300024330	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGAIEVRVDDCVMRLVVDHAHRLLEVIRVEHRDAVAPDLAGAL
Ga0207677_101017183	3300026023	Miscanthus Rhizosphere	MSYRIEVHPDAGTLLRTLKPHVVLRLGRALAELAETIGAGADEPHELEVDNCVLRFVIDHAQRLLEVIQIELREPLAAAYTDSHA
Ga0209888_10357292	3300026274	Permafrost Soil	MSYRIQVHPEAGSLLRTLAPHVVLRLGHSLAELAEAISIGDDPHGDELRIDDCVMQFAIDHAERLVRVTHIEQREALSPLFTEAPAHA
Ga0209438_10059492	3300026285	Grasslands Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTADDEAGPGELRVDNCVMRFVVDHAHRLLELIQVEQAEPNAAYAAAAPAI
Ga0209153_10431733	3300026312	Soil	VSYRIQVQPEAGSLLRTFAPHVVLRLGRALGDLAAALADGEQPDGTELHVDDCVMQFVVNHAQRLLEVVHVEQREALQPAWAPADVPA
Ga0209472_13190852	3300026323	Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDIGASEVRVEDCVLRLVVDHAQRLLEVIRIEQREAVAPAWA
Ga0179587_100082723	3300026557	Vadose Zone Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIRIEHRDAVAPAWAGAL
Ga0209220_10996672	3300027587	Forest Soil	EAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGASEVRVDDCVLRLVVDHAHRLLEVIHIEHREAVAPAWAGAL
Ga0209076_10091183	3300027643	Vadose Zone Soil	MGYRIQVHPEAGSLLQTLAPHVLLRLGRALAELAEALASGEEDGASEVRVDDCVLRLVVDHAQRLLEVIRIEHREAVEPAWAGAL
Ga0209217_10010073	3300027651	Forest Soil	MSYRIQVHPEASSLLQTLAPHVLLRLGRALADLAEALASGEEAVASEVRVEDCVLRLVVDHAQRLLEVIHIEHREAVAPAWAGAL
Ga0209388_10997522	3300027655	Vadose Zone Soil	VGSRRQICRTMSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGASEVRVDDCVLRLVVDHAHRLLEVIRIEQREAVAPAWAGTL
Ga0208990_10105402	3300027663	Forest Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEDAGTSEVRVDDCVMRLVVDHAHRLLEVIHIEHRDAVAPAWAGAL
Ga0209011_10061073	3300027678	Forest Soil	MSYRIQVHPEAGSLLQTLAPHVLLRLGRALADLAEALASGEEAGASEVRVDDCVLRLVVDHAHRLLEVIHIEHREAVAPAWAGAL
Ga0209488_100614843	3300027903	Vadose Zone Soil	MSYRIQVHPDAGVLLRTLAPHIVLRLGRALAELAESLAAGEDPGPGELQVDGCILQFAIDHAHRLLEVVHVEQRELLAAAYAAAPAPA
Ga0209488_102887503	3300027903	Vadose Zone Soil	MSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGNDQGQGEVRVDNCVMQFVVDHAHRLLEVIHIEQSEPAAAYAPAPAHV
Ga0307282_103723212	3300028784	Soil	MSYRIQVHPDAGTLLRTLKPHVVLRLGRALAELAESISAGGPEAEELQVDNCVLRFVIDHAHRLLEVIHIELREPLSAAYADSHA
Ga0073995_121184692	3300031047	Soil	SILRGFAPHVVLRLGRALAELADALSGGEEFDADELRVEDCVVQFIVDRAEQLLRVIHVEQRDTLQPALAYSAASP
Ga0307469_108285701	3300031720	Hardwood Forest Soil	RAMSYRIQVHPEAGSLLRTLKPHVVLRLGRALAELAESLTAGDEAGPGELRVDNCVIRFVVDHPHRLLEVNQVEQAEPIAAYAAAAPAI
Ga0307473_101275492	3300031820	Hardwood Forest Soil	MSYRIQVHPEAGSLLRTLEPHVMLRLGRALAELAESLTAGDEAGPGELRVDNCVIRFVVDHPHRLLEVNQVEQAEPIAAYAAAAPAI
Ga0308173_108986322	3300032074	Soil	MSYRIQIQPEAGSLLRTLAPHTVLRLGHALADLADAIASGETPQETELHIDDCVLQFVVNHAHRLVEVVHVEQREQAAPSYAAAATTV
Ga0307471_1001757812	3300032180	Hardwood Forest Soil	MSYRIQVHPEAGSLLRALKPHVVLRLGRALAELAESLTAGDEAGPGELRVDNCVMRFVVDHAHRLLEVIQVEQAEPIAAYAAAAPAI
Ga0307471_1021561411	3300032180	Hardwood Forest Soil	MSYRIQVHPEAGSLLRTFAPHVVLRLGRALADLAESLSSGEDADGNELHVDDCVMQFVVDHAERLLRVVHVEQRDALQPAYAHEATI
Ga0335079_105449992	3300032783	Soil	MSYRIQVHPEAGSLLRAFAPHVVLRLGRALADLAAALADGDDLEDSELHVEDCVMQFVVNHAQRLLEVVHVEQRQSLQPAWAQAHAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073845

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences