Metagenome / Metatranscriptome Family F073887

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073887
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	50 residues
Representative Sequence	LDAFGNELPMVALDSLRFDLDLARHEAATGSHVKQQPAAAPTEQAAS
Number of Associated Samples	98
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.83 %
% of genes near scaffold ends (potentially truncated)	98.33 %
% of genes from short scaffolds (< 2000 bps)	92.50 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.000 % of family members)
Environment Ontology (ENVO)	Unclassified (28.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.33% β-sheet: 0.00% Coil/Unstructured: 70.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13649	Methyltransf_25	7.50
PF14493	HTH_40	6.67
PF10672	Methyltrans_SAM	6.67
PF13432	TPR_16	3.33
PF07883	Cupin_2	3.33
PF12847	Methyltransf_18	2.50
PF16124	RecQ_Zn_bind	1.67
PF00011	HSP20	1.67
PF00933	Glyco_hydro_3	1.67
PF02511	Thy1	0.83
PF06314	ADC	0.83
PF01979	Amidohydro_1	0.83
PF07228	SpoIIE	0.83
PF00005	ABC_tran	0.83
PF01565	FAD_binding_4	0.83
PF13414	TPR_11	0.83
PF01833	TIG	0.83
PF04909	Amidohydro_2	0.83
PF00069	Pkinase	0.83
PF12704	MacB_PCD	0.83
PF12276	DUF3617	0.83
PF12850	Metallophos_2	0.83
PF02861	Clp_N	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.33
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.67
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	1.67
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.83
COG4689	Acetoacetate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.83 %
Unclassified	root	N/A	30.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	40.00 %
Unclassified	root	N/A	30.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.33 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.00 %
Unclassified	root	N/A	30.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.33 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.00 %
Unclassified	root	N/A	30.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.33 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.00 %
Unclassified	root	N/A	30.83 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.67 %
Pseudoxanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas	0.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.00 %
Unclassified	root	N/A	30.83 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
unclassified Pseudoxanthomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas	0.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.00 %
Unclassified	root	N/A	30.83 %
Pseudoxanthomonas sp. CF125	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	0.83 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_101743478	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300001546\|JGI12659J15293_10129464	Not Available	550	Open in IMG/M
3300001593\|JGI12635J15846_10444404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300004152\|Ga0062386_100182009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1649	Open in IMG/M
3300004152\|Ga0062386_100431769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1064	Open in IMG/M
3300004267\|Ga0066396_10077481	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300005177\|Ga0066690_10640376	Not Available	708	Open in IMG/M
3300005179\|Ga0066684_10987416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300005332\|Ga0066388_100131278	All Organisms → cellular organisms → Bacteria	3050	Open in IMG/M
3300005434\|Ga0070709_10093452	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300005434\|Ga0070709_10252482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1271	Open in IMG/M
3300005435\|Ga0070714_101103121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300005435\|Ga0070714_102505271	Not Available	501	Open in IMG/M
3300005436\|Ga0070713_102431617	Not Available	506	Open in IMG/M
3300005439\|Ga0070711_100615766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300005439\|Ga0070711_100915199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300005532\|Ga0070739_10526187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300005538\|Ga0070731_10049523	All Organisms → cellular organisms → Bacteria	2801	Open in IMG/M
3300005538\|Ga0070731_10475922	Not Available	831	Open in IMG/M
3300005541\|Ga0070733_10986647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300005542\|Ga0070732_10204455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1180	Open in IMG/M
3300005542\|Ga0070732_10945675	Not Available	527	Open in IMG/M
3300005607\|Ga0070740_10251446	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005764\|Ga0066903_102173361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300005921\|Ga0070766_10604773	Not Available	736	Open in IMG/M
3300005944\|Ga0066788_10186468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300005952\|Ga0080026_10001870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5087	Open in IMG/M
3300006162\|Ga0075030_100554367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300006174\|Ga0075014_100227278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300006804\|Ga0079221_10805331	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300009521\|Ga0116222_1535077	Not Available	514	Open in IMG/M
3300009545\|Ga0105237_10302180	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300010043\|Ga0126380_10762334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300010048\|Ga0126373_12337010	Not Available	595	Open in IMG/M
3300010048\|Ga0126373_12979717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300010048\|Ga0126373_13114295	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010343\|Ga0074044_10016401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5440	Open in IMG/M
3300010358\|Ga0126370_10473450	Not Available	1051	Open in IMG/M
3300010376\|Ga0126381_103098216	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300010376\|Ga0126381_103434392	Not Available	623	Open in IMG/M
3300010398\|Ga0126383_10521713	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300010398\|Ga0126383_12770542	Not Available	572	Open in IMG/M
3300012200\|Ga0137382_10197682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1380	Open in IMG/M
3300012210\|Ga0137378_10890719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300012469\|Ga0150984_121301184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300012986\|Ga0164304_10765805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300012986\|Ga0164304_11151810	Not Available	624	Open in IMG/M
3300014165\|Ga0181523_10138374	Not Available	1440	Open in IMG/M
3300014200\|Ga0181526_10268660	Not Available	1087	Open in IMG/M
3300014501\|Ga0182024_12009861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300014501\|Ga0182024_12019839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300014969\|Ga0157376_12539923	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300015242\|Ga0137412_10454613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300015371\|Ga0132258_12082186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1426	Open in IMG/M
3300016404\|Ga0182037_10953173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300017933\|Ga0187801_10167785	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300017970\|Ga0187783_10663542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300017999\|Ga0187767_10104734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300018034\|Ga0187863_10025055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3590	Open in IMG/M
3300018468\|Ga0066662_10827930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300018468\|Ga0066662_12331009	Not Available	563	Open in IMG/M
3300018482\|Ga0066669_11024786	Not Available	745	Open in IMG/M
3300019786\|Ga0182025_1013535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300020580\|Ga0210403_11071910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300020580\|Ga0210403_11503785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300020582\|Ga0210395_11346802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300021168\|Ga0210406_11275716	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300021170\|Ga0210400_10885498	Not Available	729	Open in IMG/M
3300021170\|Ga0210400_11326791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300021171\|Ga0210405_10386486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1103	Open in IMG/M
3300021420\|Ga0210394_11449738	Not Available	582	Open in IMG/M
3300021433\|Ga0210391_11116028	Not Available	612	Open in IMG/M
3300021478\|Ga0210402_10516449	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300021559\|Ga0210409_11568376	Not Available	534	Open in IMG/M
3300021560\|Ga0126371_11240992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300021560\|Ga0126371_13455313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. CF125	533	Open in IMG/M
3300021560\|Ga0126371_13589281	All Organisms → cellular organisms → Bacteria → Terrabacteria group	523	Open in IMG/M
3300022522\|Ga0242659_1044265	Not Available	770	Open in IMG/M
3300022529\|Ga0242668_1064911	Not Available	680	Open in IMG/M
3300022714\|Ga0242671_1117495	Not Available	522	Open in IMG/M
3300025404\|Ga0208936_1015410	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300025494\|Ga0207928_1007878	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300025906\|Ga0207699_10076695	All Organisms → cellular organisms → Bacteria → Acidobacteria	2060	Open in IMG/M
3300025906\|Ga0207699_10263810	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300025929\|Ga0207664_10921534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300027773\|Ga0209810_1322587	Not Available	572	Open in IMG/M
3300027787\|Ga0209074_10243746	Not Available	695	Open in IMG/M
3300027812\|Ga0209656_10455619	Not Available	565	Open in IMG/M
3300027829\|Ga0209773_10208691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300027842\|Ga0209580_10450267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300027867\|Ga0209167_10373193	Not Available	776	Open in IMG/M
3300027867\|Ga0209167_10650371	Not Available	577	Open in IMG/M
3300027874\|Ga0209465_10041367	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300027884\|Ga0209275_10094888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1517	Open in IMG/M
3300027889\|Ga0209380_10484700	Not Available	722	Open in IMG/M
3300027905\|Ga0209415_10496124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300027911\|Ga0209698_10410086	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300029636\|Ga0222749_10720268	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300029943\|Ga0311340_10212573	All Organisms → cellular organisms → Bacteria → Acidobacteria	1933	Open in IMG/M
3300030707\|Ga0310038_10202690	Not Available	946	Open in IMG/M
3300031027\|Ga0302308_10289737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300031250\|Ga0265331_10396163	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300031573\|Ga0310915_10261386	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300031715\|Ga0307476_11206111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300031912\|Ga0306921_10623430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1245	Open in IMG/M
3300031938\|Ga0308175_100370548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1486	Open in IMG/M
3300031941\|Ga0310912_11505498	Not Available	506	Open in IMG/M
3300031962\|Ga0307479_10787962	Not Available	926	Open in IMG/M
3300031996\|Ga0308176_10260548	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300032066\|Ga0318514_10441048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300032180\|Ga0307471_100615548	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300032180\|Ga0307471_102638643	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300032261\|Ga0306920_102471628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300032805\|Ga0335078_11106922	Not Available	925	Open in IMG/M
3300032828\|Ga0335080_10894519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	911	Open in IMG/M
3300032828\|Ga0335080_12129099	Not Available	540	Open in IMG/M
3300032892\|Ga0335081_10021454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	10455	Open in IMG/M
3300033158\|Ga0335077_10398054	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300033158\|Ga0335077_10920573	Not Available	879	Open in IMG/M
3300034163\|Ga0370515_0056365	Not Available	1725	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.83%
Host-Associated	Host-Associated	4.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.83%
Aquatic	Environmental → Aquatic	10.00%
Plants	Host-Associated → Plants	4.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.17%
Freshwater	Environmental → Aquatic → Freshwater	7.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.33%
Sediment	Environmental → Aquatic → Sediment	2.50%
Peat	Environmental → Terrestrial → Peat	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.83%
Loam	Environmental → Terrestrial → Soil → Loam	15.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.00%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1017434781	3300000955	Soil	ITGSTRLNGNWSEEELDNFGAELPMVILDSLNTDLEAARHEAASGSHAKAAVPAPTEQAAS*
JGI12659J15293_101294641	3300001546	Forest Soil	FGNELPMVALDSLRADLDLARHEASSGSHAKQAAVPTPTEQAAS*
JGI12635J15846_104444041	3300001593	Forest Soil	FGSELPMVALDSLRADLDLARYEAATRSHVKPQAPTTPTEQAAR*
Ga0062386_1001820092	3300004152	Bog Forest Soil	GAMRLNGSWSEDELDAFGNELPMVALDSLRFDLDLARHEAATGSHVKHEPPAAPTEQAAS
Ga0062386_1004317692	3300004152	Bog Forest Soil	GAMRLNGSWSEDELDAFGNELPMVALDSLRFDLDLARHEAASGSHVKHEPPAAPTEQAAS
Ga0066396_100774811	3300004267	Tropical Forest Soil	ITGSTRLNGNWSEEELDDFGAELPMVILDSLNADLDAARHEAASGSHAKHAVPATPTEQAAS*
Ga0066690_106403762	3300005177	Soil	LNGNWSEHDLENFGTELPMVVLDSLNADLDLARHEASTGSHVKEPVPTGQAAS*
Ga0066684_109874162	3300005179	Soil	GLWSEDDLDAFGTELPSVVLDSLNADLDLARHEAAAASHKQTVAAAPTEQAAS*
Ga0066388_1001312781	3300005332	Tropical Forest Soil	NGNWSEDELDGFGAELPMVVVDSLNGDLDAARHEAASASHAKPATSPAPTSPAAS*
Ga0070709_100934523	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LPMVALDSLRFDLDLARHEAASGSHTKPQSPVAPTEQAAS*
Ga0070709_102524821	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LDTFGSELPMVALDSLRFDLDHARHEAAAGSHAKHAIATAPTEQAAS*
Ga0070714_1011031211	3300005435	Agricultural Soil	AFPEDITGSTRLNGNWSEEELDNFGSELPMVILDSLNSDLDAARLEAASGSHAKHESPAAPTPAAS*
Ga0070714_1025052711	3300005435	Agricultural Soil	GATRLNGNWSEHDLENFGTELPMVVLDSLNADLDLARHEASTGSHVKQAVPTEQAAS*
Ga0070713_1024316171	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	WSEAELDAFGTELPMVALDSLRSDLDLARHEAASGSHVKQPAPSVPTEQAAS*
Ga0070711_1006157662	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	FPEDITGATRLNGNWSEEELDGFGAELPMVILDSLNTDLDAARHEAASGSHAKQPVPAAPPTPAAS*
Ga0070711_1009151992	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRLNGLWTEDELDAFGNELPMVILDSLRSDLDLARYEASSGSHAKQPVPAAPTEQAAR*
Ga0070739_105261871	3300005532	Surface Soil	DGFGSELPMVVLDSLHSDLDAARLEAAGSHSKHEAQPAPTSSAAS*
Ga0070731_100495233	3300005538	Surface Soil	FPEDISGSTRLNGGWSEDELDAFGAELPMVVLDSLNADLDLARYEASTGSHVKHQVPTEQAAS*
Ga0070731_104759221	3300005538	Surface Soil	VILDSLRSDLDLAQHEARSGSHAKQAATPAPTEQAAS*
Ga0070733_109866472	3300005541	Surface Soil	TRLNGGWTEAELDSWGTELPMVILDSLRTDLDAARHEAAAGSHAKHTVPATPTEQAAS*
Ga0070732_102044552	3300005542	Surface Soil	DAFGSELPMVALDSLRFDLDLARHEAASGSHAKHQTAAAPTEQAAS*
Ga0070732_109456751	3300005542	Surface Soil	ELDGFGNELPMVVLDSLHTDLDLARHEAASGTHKAAVPASSTEQAAS*
Ga0070740_102514461	3300005607	Surface Soil	LDEFGAELPTVILDSLNSDLGLARHEAATHAKPAVPAEQAAS*
Ga0066903_1021733612	3300005764	Tropical Forest Soil	EAFPEDITGSTRLNGNWSEEELDEFGTELPMVILDSLNSDLDAARLEAAGSHPKQAISAAATEQPASS*
Ga0070766_106047732	3300005921	Soil	GNELPMVALDSLRFDLDHARHEAAAGSHAKQQVPAVPTEQAAS*
Ga0066788_101864682	3300005944	Soil	TEAELDNFGTELPMVALDSLRADLDLARHEAASGSHVKQTSPVPTEQAAS*
Ga0080026_100018706	3300005952	Permafrost Soil	RLNGGWSENELDAFGSELPMVALDSLRADLDLARYEAATRSHVKPQAPTTPTEQAAR*
Ga0075030_1005543671	3300006162	Watersheds	TRLNGNWSEEELENFGGELPMVILDSLRTDLDAARHEASSGSHAKPAVPAPTEQAAS*
Ga0075014_1002272782	3300006174	Watersheds	TGAMRLNGAWTEAELDSWGAELPMVVLDSLQLDHEAARHEAASGSHAKQPATPVPTEQAAS*
Ga0079221_108053311	3300006804	Agricultural Soil	DDFGAELPMVILDSLNSDLDAARHEAASGSHAKHAVPATPTEQAAS*
Ga0116222_15350772	3300009521	Peatlands Soil	TELPMVALDTLRSDLDLARHEAATGSHVKPSVPATPTEQAAS*
Ga0105237_103021801	3300009545	Corn Rhizosphere	LPMVVLDSLNADLDLARHEASTGSHVKQSVPTEQAAS*
Ga0126380_107623342	3300010043	Tropical Forest Soil	FPEEITGSTRLNGGWTEEELDGFGTELPMVILDSLHADLDAARVEAASRSRSKPEAPAASASPAAS*
Ga0126373_123370102	3300010048	Tropical Forest Soil	WSEEELDGFGDELPMVILDSLHADLDAARHEAASGSHAKHAVPTTSTEQAAS*
Ga0126373_129797172	3300010048	Tropical Forest Soil	NGLWTEEELDGFGSELPMVILDSLNGDLDLARHEASAAAHAKHPVAAAPTEQAAG*
Ga0126373_131142952	3300010048	Tropical Forest Soil	STRLNGNWSEEELDDFGAELPMVILDSLNADLDAARHEAASGSHAKHAVPATPTEQAAS*
Ga0074044_100164011	3300010343	Bog Forest Soil	GSWSEDELDAFGNELPMVALDSLRFDLDLARHEAATGSHVKQQPAAAPTEQAAS*
Ga0126370_104734502	3300010358	Tropical Forest Soil	PEDITGSTRLNGNWSEDELDGFGAELPMVVVDSLNGDLDAARHEAASASHAKPATSPAPTSPAAS*
Ga0126381_1030982162	3300010376	Tropical Forest Soil	DSLNTDLDAARHEAASGSHAKHSVPAAPTEQAAR*
Ga0126381_1034343922	3300010376	Tropical Forest Soil	DEFGTELPMVILDSLNADLDAARLEAAGSHAKQAVSATATEQPASS*
Ga0126383_105217132	3300010398	Tropical Forest Soil	TRLNGGWSEEELDEFGEELPMVILDSLNADLDLARHEAASHAKPAVQAEQAAS*
Ga0126383_127705421	3300010398	Tropical Forest Soil	RLNGNWSEEELDEFGTELPMVILDSLNADLDAARLEAAGSHAKQAVSATATEQPASS*
Ga0137382_101976821	3300012200	Vadose Zone Soil	DGFGAELPMVILDSLRTDLDAARHEASSGSHAKPAVPAPTEHAAH*
Ga0137378_108907192	3300012210	Vadose Zone Soil	EAELDAFGTELPMVALDSLRSDLDLARHEAASGSHVKPSPPIASSEQAAS*
Ga0150984_1213011841	3300012469	Avena Fatua Rhizosphere	TRLNGLWSEGDLDAFGTELPMVVLDSLNTDLDMARHEAAAASHKQTAAATPAEHAAS*
Ga0164304_107658051	3300012986	Soil	ELDGFGGELPMVILDSLRSDLDLARHEAATGSHSKQAVPATPTEQAAS*
Ga0164304_111518101	3300012986	Soil	NCGTELPMVVLDSLNADLDLARHEASTGAHVKEPVPTGQAAS*
Ga0181523_101383742	3300014165	Bog	PMVALDSLRFDLDLARHEAATGSHVKPSVPAAPTEQAAS*
Ga0181526_102686601	3300014200	Bog	PMVALDSLRFDLDLARHEAATGSHVKQQPAAAPTEQAAS*
Ga0182024_120098612	3300014501	Permafrost	LNGGWTEGELDAFGTELPMVALDSLRFDLDLARHEAASGSHVKQPVPVAPTEQATR*
Ga0182024_120198392	3300014501	Permafrost	LNGGWTEGELDAFGTELPMVALDSLRFDLDLARHEAASGSPVKQQVAVAPTEQATR*
Ga0157376_125399232	3300014969	Miscanthus Rhizosphere	TGAMRLNGGWSEDELDNFGTELPMVALDSLRFDLDLARHEAASGSHTKPQSPVAPTEQAAS*
Ga0137412_104546132	3300015242	Vadose Zone Soil	MRLNGAWTEAELDSWGTELPMVVLDSLRSDLDAARREASAGSHVKQTIPAAPTEQAAS*
Ga0132258_120821863	3300015371	Arabidopsis Rhizosphere	ATRLNGNWSEDELDAFGAELPMVILDSLRSDLDAARHEMSSRPAAKSENQPLAPESAAG*
Ga0182037_109531731	3300016404	Soil	TGSTRLNGNWSEEELDNFGSELPMVILDSLNSDLDAARLEAASGSHAKHESPAAPTPAAS
Ga0187801_101677851	3300017933	Freshwater Sediment	AFGTELPMVALDSLRFDLDLARHEAATGSHAKHQTSPAPTEQAAS
Ga0187783_106635422	3300017970	Tropical Peatland	SELPMVILDSLNADLDLSRHEASAASHAKHPVAAAPSEQPAG
Ga0187767_101047341	3300017999	Tropical Peatland	GNWSEEELDSFGAELPMVILDSLNGDLDAARHEAASGSHAKQPVPAAPPSPAAS
Ga0187863_100250553	3300018034	Peatland	LDAFGNELPMVALDSLRFDLDLARHEAATGSHVKQQPAAAPTEQAAS
Ga0066662_108279302	3300018468	Grasslands Soil	ATRLNGNWSEHDLENFGTELPMVVLDSLNADLDLARHEASTGSHVKEPVPTGQAAS
Ga0066662_123310092	3300018468	Grasslands Soil	ATRLNGNWSEHDLENFGTELPMVVLDSLNADLDLARHEASTGSHVKQAVPTEQAAS
Ga0066669_110247861	3300018482	Grasslands Soil	TRLNGNWSEHDLENFGTELPMVVLDSLNADLDLARHEASTGSHVKEPVPTGQAAS
Ga0182025_10135352	3300019786	Permafrost	NGGWTEGELDAFGTELPMVALDSLRFDLDLARHEAASGSHVKQPVPVAPTEQATR
Ga0210403_110719101	3300020580	Soil	SELPMVILDSLRSDLDLARHEASSGSHAKQAVPAPTEQAAS
Ga0210403_115037852	3300020580	Soil	VALDSLRFDLDHARHEAAAGSHTKSEPHPVPSEQAAS
Ga0210395_113468022	3300020582	Soil	NELDAFGSELPMVALDSLRADLDLARYEAATRSHVKPQAPTTPTEQAAR
Ga0210406_112757162	3300021168	Soil	LNGNWSEEELDNFGGELPMVILDSLRTDLDAARHEASSGSHTKPAVPAPTEHAAH
Ga0210400_108854981	3300021170	Soil	FGNELPMVALDSLRFDLDLARHEAATGSHVKLQSTAAPTEQAAS
Ga0210400_113267912	3300021170	Soil	EAELDAFGNELPMVALDSLRFDLDLARHEAAQGSHVKQQPAAAPSEQAAS
Ga0210405_103864862	3300021171	Soil	EDITGATRLNGSWTEAELDAFGTELPMVALDSLRFDLDHARHEAATGSHAKQSAPSVPTEQAAS
Ga0210394_114497382	3300021420	Soil	MVALDSLRFDLDHARHEAATGNHAKQQAPAVPTEQAAS
Ga0210391_111160281	3300021433	Soil	EDITGAMRLNGGWSEAELDAFGNELPMVALDSLRFDLDLARHEAATGSHVKLQSTAAPTEQAAS
Ga0210402_105164491	3300021478	Soil	SIRLNGSWTEAELDAFGTELPMVALDSLRFDLDHARHEAATGSHAKQSPPSVPTEQAAS
Ga0210409_115683762	3300021559	Soil	ELPMVILDSLRTDLDAARHEASSGSHAKPAVPAPTEHAAH
Ga0126371_112409921	3300021560	Tropical Forest Soil	MVILDSLNADLDAARVEAASGSHAKHESSTASTSPAAS
Ga0126371_134553131	3300021560	Tropical Forest Soil	EDITGSTRLNGNWSEEELDEFGTELPMVILDSLNADLDAVRLEAAGSHAKQAVSATATEQPASS
Ga0126371_135892812	3300021560	Tropical Forest Soil	PMVVLDALQADLDLARYEAASGSHVKHPTPAAPTEQAAS
Ga0242659_10442651	3300022522	Soil	PMVALDSLRFDLDLARHEAATGSHVKQQSAATPTEQAAS
Ga0242668_10649111	3300022529	Soil	ALDSLRFDLDLARHEAAQGSHVKQSVPAASTEQAAS
Ga0242671_11174953	3300022714	Soil	MVALDSLRFDLDHARHEAAAGSHAKAQAPAVPTEQAAS
Ga0208936_10154101	3300025404	Peatland	AIRLNGSWTEAELDAFGTELPMVALDSLRFDLDHARHEAATGSHAKQSVATAPTEQAAS
Ga0207928_10078781	3300025494	Arctic Peat Soil	ELPMVALDSLRSDLDLARYEAASGSHVKQSVPVAPTEQAAS
Ga0207699_100766952	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PIVSWTEAELDNFGTELPMVALDSLRTDLDHARHEAASGSHVKQPVPPAPSEQAAS
Ga0207699_102638101	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LPMVALDSLRFDLDLARHEAASGSHTKPQSPVAPTEQAAS
Ga0207664_109215342	3300025929	Agricultural Soil	ITGATRLNGNWSEHDLENFGTELPMVVLDSLNADLDLARHEASTGSHVKEPVPTGQAAS
Ga0209810_13225871	3300027773	Surface Soil	LDGFGSELPMVVLDSLHSDLDAARLEAAGSHSKHEAQPAPTSSAAS
Ga0209074_102437461	3300027787	Agricultural Soil	TGATRLNGNWSEQDLDNFGTELPMVVLDSLNADLDLARHEASTGSHVKEPVPTGQAAS
Ga0209656_104556191	3300027812	Bog Forest Soil	VALDSLRFDLDLARHEAASGSHVKHEPPAAPTEQAAS
Ga0209773_102086912	3300027829	Bog Forest Soil	ALDSLRADLDLARHEAATGSHVKAHVPVTPTEQAAS
Ga0209580_104502671	3300027842	Surface Soil	LPMVALDSLRFDLDLARHEAASGSHAKHQTAAAPTEQAAS
Ga0209167_103731932	3300027867	Surface Soil	GAMRLNGGWTEAELDNFGTELPMVALDSLRSDLDLARHEAASGSHVKQPTQSAPTEQAAS
Ga0209167_106503712	3300027867	Surface Soil	GWTEAELDSWGTELPMVILDSLRTDLDAARHEAAAGSHAKHTVPATPTEQAAS
Ga0209465_100413671	3300027874	Tropical Forest Soil	PMVILDSLNADLDAARHEAASGSHAKHAVPATPTEQAAS
Ga0209275_100948882	3300027884	Soil	GGWSEAELDAFGNELPMVALDSLRFDLDLARHEAATGSHVKQSVPAASTEQAAS
Ga0209380_104847001	3300027889	Soil	AELDAFGNELPMVALDSLRFDLDHARHEAAAGSHAKQQVPAVPTEQAAS
Ga0209415_104961242	3300027905	Peatlands Soil	ELPMVALDTLRADLDLARHEAATGSHVKQQSSVAPTEQAAS
Ga0209698_104100863	3300027911	Watersheds	DITSATRLNGNWSEEELENFGGELPMVILDSLRTDLDAARHEASSGSHAKPAVPAPTEQAAS
Ga0222749_107202681	3300029636	Soil	PMVALDSLRADLDLARHEAATGSHVKPQAPVAPTEQAAS
Ga0311340_102125733	3300029943	Palsa	ELPMVALDSLRFDLDHARHEAATGSHAKQSVAAAPPEQAAS
Ga0310038_102026901	3300030707	Peatlands Soil	DELDAFGNELPMVALDSLRFDLDLARHEAATGSHVKPSVPATPTEQAAS
Ga0302308_102897372	3300031027	Palsa	GSWTEAELDAFGNELPMVALDSLRFDLDHARHEAATGSHAKQSVATPTEQAAS
Ga0265331_103961632	3300031250	Rhizosphere	AELDAFGNELPMVALDSLRADLDLARHEAASGSHVKQSVAPAPEHAAS
Ga0310915_102613863	3300031573	Soil	ILDSLNADLDAARLEAAGSHAKHEAPASPTSPAAS
Ga0307476_112061112	3300031715	Hardwood Forest Soil	LDTFGTELPMVALDSLRFDLDLARHEASTGSHAKQTLSAATTEQAAS
Ga0306921_106234302	3300031912	Soil	EAFPEDITGSTRLNGNWSEEELDNFGSELPMVILDSLNSDLDAARLEAASGSHAKHESPAAPTPAAS
Ga0308175_1003705481	3300031938	Soil	DLDAFGTELPMVVLDSLNTDLDMARHEAAAASHKQTAAATPAEHAAS
Ga0310912_115054981	3300031941	Soil	MVILDSLNSDLDAARHEASSGSHAKQAAPATPTEQAAS
Ga0307479_107879621	3300031962	Hardwood Forest Soil	NWSEEDLDGFGAELPMVILDSLRTDLDAARHEASSGSHAKPAVPAPTEHAAR
Ga0308176_102605482	3300031996	Soil	EQDLDNFGTELPMVVLDSLNADLDLARHEASTGSHVKEPVPTGQAAS
Ga0318514_104410481	3300032066	Soil	STRLNGNWSEEELDNFGSELPMVILDSLNSDLDAARLEAASGSHAKHESPAAPTPAAS
Ga0307471_1006155482	3300032180	Hardwood Forest Soil	EDITGSTRLNGSWSEEELDNFGGELPMVILDSLRTDLDAARHEAASGSHAKSAVPATEHAAS
Ga0307471_1026386431	3300032180	Hardwood Forest Soil	EAELDAFGTELPMVALDSLRFDLDHARHEAAGSHAKPHIPAAPTEQAAS
Ga0306920_1024716281	3300032261	Soil	AFPEDITGSTRLNGGWSEEELDGFGSELPMVILDSLNADLDAARVEAASRSQAKHEAPAAPSSPAAS
Ga0335078_111069221	3300032805	Soil	MVILDSLNADLDLARHEASGASHAKPAVSTAPTEQAAS
Ga0335080_108945191	3300032828	Soil	SEEELDGFGDELPMVILDSLNADLDLARYEAATHTKPAVTAEQAAG
Ga0335080_121290991	3300032828	Soil	RLNGGWSEEELDGFGAELPMVILDSLNADLDLARYEASTSSHAKPAVSAEQAAS
Ga0335081_100214541	3300032892	Soil	ELPMVILDSLNADLDLARYEAASHAKPPVPAEQAAS
Ga0335077_103980543	3300033158	Soil	LNGGWSEEELDGYGDELPMVVLDSLNADLDAARHEAASGSHAKQAAPAAPTEQAAS
Ga0335077_109205731	3300033158	Soil	LPMVFLDALHADLDAARHEASSGSHAKPAVPATPTEQAAS
Ga0370515_0056365_1536_1709	3300034163	Untreated Peat Soil	MRLNGSWTEAELDAFGNELPMVALDSLRFDLDHARHEAATGSHAKQSVATPTEQAAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073887

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences