Metagenome / Metatranscriptome Family F074067

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074067
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	64 residues
Representative Sequence	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Number of Associated Samples	87
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	35.83 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.833 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (46.667 % of family members)
Environment Ontology (ENVO)	Unclassified (46.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.13% β-sheet: 0.00% Coil/Unstructured: 33.87%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02798	GST_N	7.50
PF01638	HxlR	5.83
PF00440	TetR_N	5.00
PF00462	Glutaredoxin	5.00
PF00106	adh_short	1.67
PF13460	NAD_binding_10	1.67
PF00109	ketoacyl-synt	0.83
PF02801	Ketoacyl-synt_C	0.83
PF05368	NmrA	0.83
PF00561	Abhydrolase_1	0.83
PF00155	Aminotran_1_2	0.83
PF00211	Guanylate_cyc	0.83
PF01965	DJ-1_PfpI	0.83
PF12680	SnoaL_2	0.83
PF01019	G_glu_transpept	0.83
PF13936	HTH_38	0.83
PF10129	OpgC_C	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	5.83
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.83
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.83 %
Unclassified	root	N/A	44.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.83 %
Unclassified	root	N/A	44.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.83 %
Unclassified	root	N/A	44.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	18.33 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	15.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples	0.83 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.33 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.50 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.83 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.83 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.17 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	2.50 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2.50 %
Bradyrhizobium sp. Leo170	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Leo170	0.83 %
Mesorhizobium sp. L48C026A00	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. L48C026A00	0.83 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.83 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002886\|JGI25612J43240_1006172	All Organisms → cellular organisms → Bacteria → Proteobacteria	1681	Open in IMG/M
3300002917\|JGI25616J43925_10147778	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300005332\|Ga0066388_104648350	Not Available	699	Open in IMG/M
3300005434\|Ga0070709_10611254	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005434\|Ga0070709_11320929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	582	Open in IMG/M
3300005439\|Ga0070711_100240408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1416	Open in IMG/M
3300005468\|Ga0070707_100134869	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300005468\|Ga0070707_100682588	Not Available	990	Open in IMG/M
3300005518\|Ga0070699_100144399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2102	Open in IMG/M
3300005518\|Ga0070699_100249983	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300005536\|Ga0070697_101031464	Not Available	731	Open in IMG/M
3300005602\|Ga0070762_10733415	Not Available	665	Open in IMG/M
3300005764\|Ga0066903_108711342	Not Available	516	Open in IMG/M
3300006028\|Ga0070717_10236821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1608	Open in IMG/M
3300006034\|Ga0066656_10580809	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300006050\|Ga0075028_100406574	Not Available	779	Open in IMG/M
3300006163\|Ga0070715_10810687	Not Available	569	Open in IMG/M
3300006172\|Ga0075018_10313791	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300006173\|Ga0070716_100645364	Not Available	802	Open in IMG/M
3300006173\|Ga0070716_101132133	Not Available	626	Open in IMG/M
3300006175\|Ga0070712_100483407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1036	Open in IMG/M
3300006175\|Ga0070712_101467975	Not Available	596	Open in IMG/M
3300007788\|Ga0099795_10654248	Not Available	503	Open in IMG/M
3300009038\|Ga0099829_10037221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3516	Open in IMG/M
3300009038\|Ga0099829_10078664	All Organisms → cellular organisms → Bacteria → Proteobacteria	2518	Open in IMG/M
3300009038\|Ga0099829_10633970	Not Available	888	Open in IMG/M
3300010043\|Ga0126380_10509024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	926	Open in IMG/M
3300010047\|Ga0126382_11765906	Not Available	580	Open in IMG/M
3300010159\|Ga0099796_10332359	Not Available	651	Open in IMG/M
3300010376\|Ga0126381_102279875	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300010398\|Ga0126383_11635366	Not Available	733	Open in IMG/M
3300011269\|Ga0137392_10509749	Not Available	999	Open in IMG/M
3300012096\|Ga0137389_10483844	Not Available	1061	Open in IMG/M
3300012189\|Ga0137388_10429392	Not Available	1224	Open in IMG/M
3300012198\|Ga0137364_10392008	Not Available	1039	Open in IMG/M
3300012198\|Ga0137364_10607077	Not Available	824	Open in IMG/M
3300012200\|Ga0137382_10063121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2351	Open in IMG/M
3300012202\|Ga0137363_10716038	Not Available	847	Open in IMG/M
3300012203\|Ga0137399_10074786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2552	Open in IMG/M
3300012203\|Ga0137399_10195598	All Organisms → cellular organisms → Bacteria → Proteobacteria	1639	Open in IMG/M
3300012205\|Ga0137362_10038052	All Organisms → cellular organisms → Bacteria → Proteobacteria	3858	Open in IMG/M
3300012208\|Ga0137376_10158139	Not Available	1952	Open in IMG/M
3300012208\|Ga0137376_10240905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1568	Open in IMG/M
3300012357\|Ga0137384_10649176	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300012361\|Ga0137360_10278879	Not Available	1382	Open in IMG/M
3300012361\|Ga0137360_11051307	Not Available	703	Open in IMG/M
3300012361\|Ga0137360_11158045	Not Available	668	Open in IMG/M
3300012362\|Ga0137361_10218261	All Organisms → cellular organisms → Bacteria → Proteobacteria	1730	Open in IMG/M
3300012582\|Ga0137358_10155150	Not Available	1560	Open in IMG/M
3300012582\|Ga0137358_10188123	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300012582\|Ga0137358_10475095	Not Available	843	Open in IMG/M
3300012685\|Ga0137397_10036503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3515	Open in IMG/M
3300012685\|Ga0137397_10215218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. L48C026A00	1430	Open in IMG/M
3300012685\|Ga0137397_11291320	Not Available	520	Open in IMG/M
3300012917\|Ga0137395_10822840	Not Available	673	Open in IMG/M
3300012918\|Ga0137396_10822774	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012922\|Ga0137394_10295122	Not Available	1386	Open in IMG/M
3300012922\|Ga0137394_10656157	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012923\|Ga0137359_10528247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Leo170	1039	Open in IMG/M
3300012923\|Ga0137359_11503519	Not Available	561	Open in IMG/M
3300012923\|Ga0137359_11687177	Not Available	521	Open in IMG/M
3300012924\|Ga0137413_11192532	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300012924\|Ga0137413_11207221	Not Available	603	Open in IMG/M
3300012930\|Ga0137407_12159282	Not Available	532	Open in IMG/M
3300012944\|Ga0137410_10047609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3045	Open in IMG/M
3300012944\|Ga0137410_10164367	Not Available	1700	Open in IMG/M
3300012944\|Ga0137410_10728988	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300012944\|Ga0137410_11327513	Not Available	623	Open in IMG/M
3300012958\|Ga0164299_10608305	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300012961\|Ga0164302_10872165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300012961\|Ga0164302_11425163	Not Available	567	Open in IMG/M
3300012987\|Ga0164307_10675150	Not Available	806	Open in IMG/M
3300013306\|Ga0163162_13060459	Not Available	537	Open in IMG/M
3300015051\|Ga0137414_1140560	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300015051\|Ga0137414_1140561	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300015264\|Ga0137403_10012330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9376	Open in IMG/M
3300016319\|Ga0182033_12078844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	518	Open in IMG/M
3300019882\|Ga0193713_1022703	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
3300020140\|Ga0179590_1020815	All Organisms → cellular organisms → Bacteria → Proteobacteria	1542	Open in IMG/M
3300020170\|Ga0179594_10005457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3243	Open in IMG/M
3300020199\|Ga0179592_10120603	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M
3300020199\|Ga0179592_10194441	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300020199\|Ga0179592_10378752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	620	Open in IMG/M
3300020579\|Ga0210407_10718853	Not Available	774	Open in IMG/M
3300020583\|Ga0210401_10199610	All Organisms → cellular organisms → Bacteria → Proteobacteria	1858	Open in IMG/M
3300021086\|Ga0179596_10142886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1131	Open in IMG/M
3300021171\|Ga0210405_10342507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1180	Open in IMG/M
3300021178\|Ga0210408_11076992	Not Available	619	Open in IMG/M
3300021479\|Ga0210410_10045911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3803	Open in IMG/M
3300021559\|Ga0210409_11084496	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300024330\|Ga0137417_1068230	Not Available	802	Open in IMG/M
3300024330\|Ga0137417_1180278	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300024347\|Ga0179591_1059936	All Organisms → cellular organisms → Bacteria → Proteobacteria	2830	Open in IMG/M
3300025898\|Ga0207692_10141777	Not Available	1367	Open in IMG/M
3300025905\|Ga0207685_10524090	Not Available	627	Open in IMG/M
3300025910\|Ga0207684_10277419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1446	Open in IMG/M
3300025910\|Ga0207684_10382570	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300025929\|Ga0207664_10805376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	845	Open in IMG/M
3300026285\|Ga0209438_1007075	All Organisms → cellular organisms → Bacteria → Proteobacteria	3795	Open in IMG/M
3300026285\|Ga0209438_1011392	All Organisms → cellular organisms → Bacteria → Proteobacteria	2986	Open in IMG/M
3300026285\|Ga0209438_1057228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1285	Open in IMG/M
3300026304\|Ga0209240_1003961	All Organisms → cellular organisms → Bacteria → Proteobacteria	5577	Open in IMG/M
3300026304\|Ga0209240_1186699	Not Available	627	Open in IMG/M
3300026355\|Ga0257149_1005258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1559	Open in IMG/M
3300026376\|Ga0257167_1008751	All Organisms → cellular organisms → Bacteria → Proteobacteria	1313	Open in IMG/M
3300026469\|Ga0257169_1001699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1955	Open in IMG/M
3300026507\|Ga0257165_1069877	Not Available	642	Open in IMG/M
3300026555\|Ga0179593_1109314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3803	Open in IMG/M
3300026557\|Ga0179587_10150547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1449	Open in IMG/M
3300028047\|Ga0209526_10054553	All Organisms → cellular organisms → Bacteria	2814	Open in IMG/M
3300028673\|Ga0257175_1060202	Not Available	707	Open in IMG/M
3300029636\|Ga0222749_10433109	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300031057\|Ga0170834_112366501	Not Available	749	Open in IMG/M
3300031122\|Ga0170822_14590541	Not Available	765	Open in IMG/M
3300031128\|Ga0170823_10932835	Not Available	505	Open in IMG/M
3300031720\|Ga0307469_11013340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	776	Open in IMG/M
3300031753\|Ga0307477_10385577	Not Available	961	Open in IMG/M
3300031820\|Ga0307473_10845066	Not Available	657	Open in IMG/M
3300032180\|Ga0307471_100654409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1213	Open in IMG/M
3300032180\|Ga0307471_102419241	Not Available	664	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.50%
Aquatic	Environmental → Aquatic	1.67%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.50%
Sediment	Environmental → Aquatic → Sediment	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.33%
Loam	Environmental → Terrestrial → Soil → Loam	19.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	46.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25612J43240_10061721	3300002886	Grasslands Soil	VSTQLTGANMRTVETPSAAGTGWRRTLGQLYRMIEAAQTSPLESLYERVLRLEQQVSALKRNLPMGSVDHERVDWGQP*
JGI25616J43925_101477783	3300002917	Grasslands Soil	MRAVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQEVSALKRNADGLDH
Ga0066388_1046483502	3300005332	Tropical Forest Soil	MRTVETPSAVGRGWRRTLSQLYRTIAAVETPPMETLYDRVLQLEQEVSALKRNLLIGSVDHERID*
Ga0070709_106112541	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRTAETPSAAGRGWRSTLIRFYHMIEALETSLEISPLESLYDRVLQLEQEVSALKRNSLTDSVDRK*
Ga0070709_113209291	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0070711_1002404082	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRTAETPSAAGRGWRSTLIRFYHMIEALETSLETSPLESLYDRVLQLEQEVSALKRNSLTDSVDRK*
Ga0070707_1001348692	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAAGTGWRRSLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGSVDHE*
Ga0070707_1006825883	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAAGTGWRRTLGQLYRMIEAAQTSPLESVYERVLRLEESLYERVLRLEQEVSALKRNLPMGSLDHERVDRGQP*
Ga0070699_1001443993	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGANMRTVETPSAVGTGWRRILSQVYRTIAAVETSPLESLYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0070699_1002499832	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGSVDHE*
Ga0070697_1010314641	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAAGTGWRRSLGQFYRMIEAIETSPLESLYDRVLRLEQEVSALKRNLPIGCSVDHE*
Ga0070762_107334152	3300005602	Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNVLIGSVDHE*
Ga0066903_1087113421	3300005764	Tropical Forest Soil	MRTVKTPTAVGIGWRRALSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLPIGSVDHK*
Ga0070717_102368211	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRN
Ga0066656_105808092	3300006034	Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0075028_1004065741	3300006050	Watersheds	MRTVETPSAVGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0070715_108106871	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRTAETPSAASRGWRSTLIRFYHMIEALETSLEISPLESLYDRVLQLEQEVSALKRNSLTDSVDRK*
Ga0075018_103137911	3300006172	Watersheds	TQLTGANMRTVETPSAVGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0070716_1006453641	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAVGTGWRRILSQLCRTIAAVETSPMEILYERVLQLEQEVSALKRNLLIGSVDHE*
Ga0070716_1011321331	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRTAETPSAAGRGWRSTLIRFYHMIEALETSLETSPLESLYDRVLQLEQEVSALKRNSLIDSVDRK*
Ga0070712_1004834073	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TQLTGANMRTVETPSAVGTGWRRTLSQLYRTIAAVERSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0070712_1014679751	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRTAETPSAASRGWRSTLIRFYHMIEALETSLETSPLESLYDRVLQLEQEVSALKRNSLIDFVDRK*
Ga0099795_106542481	3300007788	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGCVDHE*
Ga0099829_100372211	3300009038	Vadose Zone Soil	DAVSTQLTGANMRTVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQEVSALKRNLPMG*
Ga0099829_100786641	3300009038	Vadose Zone Soil	ETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGSVDHE*
Ga0099829_106339702	3300009038	Vadose Zone Soil	MRTVETPSTVGTGWRRTLSQLYRTIAAVEMSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0126380_105090242	3300010043	Tropical Forest Soil	MRTVETPSAVGTGWRKTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLPIGSVDHE*
Ga0126382_117659062	3300010047	Tropical Forest Soil	MRTVETPSAAGRGWRRTLTQLYRAMAAVETSPMEILYDRVLQLEQEVSALKRNLPIGSVDHK*
Ga0099796_103323591	3300010159	Vadose Zone Soil	MRTVETPSAFDTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDNE*
Ga0126381_1022798751	3300010376	Tropical Forest Soil	AVSTQLTGANMRTVETPSAVGRRWRKTMSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLPIGSVDHK*
Ga0126383_116353661	3300010398	Tropical Forest Soil	MRTVETPSAVGTGWRKTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLPIGSVDHK*
Ga0137392_105097492	3300011269	Vadose Zone Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVEMSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137389_104838442	3300012096	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDWGQP*
Ga0137388_104293922	3300012189	Vadose Zone Soil	MRTVETPSTVGTGWRRTLSQLYRTIAAVEMSPMEILYDRVLQLQQEVSALKRNLLIGSVDHE*
Ga0137364_103920082	3300012198	Vadose Zone Soil	MGTAETPSAVGAGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137364_106070772	3300012198	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDQVLRLEQEISALKRNLPMGSADHARVDWGQP*
Ga0137382_100631211	3300012200	Vadose Zone Soil	MRTLETPSAAGTGWRRTLSQLYRMIAAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDQSSRIS*
Ga0137363_107160381	3300012202	Vadose Zone Soil	MRTLETPSAAGTGWRRTLSQLYRMIAAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDQSSRIS
Ga0137399_100747861	3300012203	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDNE*
Ga0137399_101955983	3300012203	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQEVSALKRNLPMG*
Ga0137362_100380523	3300012205	Vadose Zone Soil	MRTVETPSAVGTGWRGSLSRLYRMIEALEASPMESLYDRVLRLEQEVSALKRNLPIGSVGHE*
Ga0137376_101581395	3300012208	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIAAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDQSSRIS*
Ga0137376_102409051	3300012208	Vadose Zone Soil	TGWRRTLSQLYRTIAAVEMSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137384_106491762	3300012357	Vadose Zone Soil	FLLSLRRTNMRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLLIGSADHE*
Ga0137360_102788792	3300012361	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQQVSALKRNLPMGSVDHERKGEQDG*
Ga0137360_110513071	3300012361	Vadose Zone Soil	MRTVETPSAFDTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137360_111580452	3300012361	Vadose Zone Soil	MRTLETPSAAGTGWRRTLSQLYRMIAAAQTSPLESLYERVLRLEQEVSALKRNLP
Ga0137361_102182613	3300012362	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSLDHERVDRGQP*
Ga0137358_101551501	3300012582	Vadose Zone Soil	MRTVETPSAVGTGWRSTLSQLYRTIAAVEMSPMEILYNRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137358_101881233	3300012582	Vadose Zone Soil	MRTVDTPSTAGTGWRRTLGRFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGSVDHE*
Ga0137358_104750953	3300012582	Vadose Zone Soil	MRTLETPSAAGTGWRRTLSQLYRMIAAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVD
Ga0137397_100365031	3300012685	Vadose Zone Soil	QDAVSTQLTGANMRTVEKPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDRE*
Ga0137397_102152182	3300012685	Vadose Zone Soil	VGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSSLKRNLLIGSVDHE*
Ga0137397_112913202	3300012685	Vadose Zone Soil	AVATQLTGTNMRTVETPSAVGTGWRGSLSRLYRMIEALEASPMESLYDRVLRLEQEVSALKRNLPIGSVGHE*
Ga0137395_108228402	3300012917	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQEVSALKRNLPMGSVDHGRVDWGQP*
Ga0137396_108227742	3300012918	Vadose Zone Soil	GTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSSLKRNLLIGSVDHE*
Ga0137394_102951222	3300012922	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYYRFLRLEQDISALKRNLPIGSVDHE*
Ga0137394_106561571	3300012922	Vadose Zone Soil	VETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSSLKRNLLIGSVDHE*
Ga0137359_105282471	3300012923	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGRFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGSVDHE*
Ga0137359_115035192	3300012923	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDLGQP*
Ga0137359_116871772	3300012923	Vadose Zone Soil	DAVSTQLTGANMRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQVEQEVSDLKRNLLIGSVGHE*
Ga0137413_111925322	3300012924	Vadose Zone Soil	QLTGANMRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSLDHERVDRGQP*
Ga0137413_112072212	3300012924	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIG
Ga0137407_121592821	3300012930	Vadose Zone Soil	MRTVEAPSAVGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRN
Ga0137410_100476094	3300012944	Vadose Zone Soil	MRTVETPSAAGTGWRGSLSRLYRMIEALETSPMESLYDRVLRLEQEVSALK
Ga0137410_101643672	3300012944	Vadose Zone Soil	PRQDAVSTQLTGANMRTVETPSAVGTGWRRTLSQLYRTIAAVEMSPMEILYNRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137410_107289882	3300012944	Vadose Zone Soil	CPRQDAVSTQLTGANMRTVETPSAVGTRWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137410_113275131	3300012944	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHGRVDWGQP*
Ga0164299_106083052	3300012958	Soil	VSTQLTGANMPTVETPSAAGTRWRRNLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDWGQP*
Ga0164302_108721651	3300012961	Soil	RTVETPSAVGTGWRRILSQLCRTIAAVETSPMEILYERVLQLEQEVSALKRNLLIGSVDHE*
Ga0164302_114251632	3300012961	Soil	MRTVETLSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQEVSALKRNLPMGSADHERVDWGQP*
Ga0164307_106751502	3300012987	Soil	MPTVETPSAAGTRWRRNLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDWGQP*
Ga0163162_130604592	3300013306	Switchgrass Rhizosphere	TVETPSAVGTGWRRILSQLCRTIAAVETSPMEILYERVLQLEQEVSALKRNLLIGSVDRE
Ga0137414_11405601	3300015051	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE*
Ga0137414_11405612	3300015051	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDRE*
Ga0137403_100123307	3300015264	Vadose Zone Soil	MGTVETPSAVGTGWRGSLSRLYRTIEALETSPMESLYDRVLRLEQEVSALKRNLPIGSVGHE*
Ga0182033_120788441	3300016319	Soil	AVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLPIRSVDHE
Ga0193713_10227032	3300019882	Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0179590_10208153	3300020140	Vadose Zone Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQQVSALKRNLPMGSVDHERVDWGQP
Ga0179594_100054571	3300020170	Vadose Zone Soil	CPRQDAVSTQLTGANMRTVETPSAVGTGWRRTLSQLYRTIAAVEMSPMEILYNRVLQLEQEVSALKRNLLIGSVDHE
Ga0179592_101206032	3300020199	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGCVDHE
Ga0179592_101944411	3300020199	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVD
Ga0179592_103787522	3300020199	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSADHERIDWGQP
Ga0210407_107188531	3300020579	Soil	QDAVSTQLTGANMRTVETPSAVGTGWRRILSQLHRTIAAVETSPMEILYERVSQLEQEVSALKRNLLIGSVDHE
Ga0210401_101996102	3300020583	Soil	MRTVETPSTAGTGWRRTLGQFYRMIEAIETSPLESLHDRVLRLEQEVSALKRNLPIDSVDNE
Ga0179596_101428862	3300021086	Vadose Zone Soil	MRTVETPSAVGTGWRRTLSKLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLPIGSVDHE
Ga0210405_103425072	3300021171	Soil	MRTVETPSAAGTGWRGSLIRFYRMIEALETSLETSPMESLYDRVLRLEQEVSALKRNLPIGSVGYE
Ga0210408_110769921	3300021178	Soil	LTGANMGTAETPSAVGTGWRRTLSQLYRTLAVVETSPMEILYDRVLRLEQEVSALKRNLLHGSVDHE
Ga0210410_100459115	3300021479	Soil	MRTVEMPSAAGTGWRRTLSQLYRLIEAAETSPLESLYERVLRLEQEVSALKRNLLIGSVDHE
Ga0210409_110844962	3300021559	Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDWGQP
Ga0137417_10682301	3300024330	Vadose Zone Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDNE
Ga0137417_11802782	3300024330	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0179591_10599362	3300024347	Vadose Zone Soil	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLDDRVLRLEQEISALKRNLPIGCVDHE
Ga0207692_101417772	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRTAETPSAAGRGWRSTMIRFYHMIEALETSLETSPLESLYDRVLQLEQEVSALKRNSLIDFVDRK
Ga0207685_105240901	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVETPSAVGTGWRRILSQLHRTIAAVETSPMEILYERVLQLEQEVSALKRNLLI
Ga0207684_102774191	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GANMRTVETPSAGDTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEVSALKRNLPIGCSVDHE
Ga0207684_103825703	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRTVEAPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVD
Ga0207664_108053761	3300025929	Agricultural Soil	LKGANMRTVETPSAVGTGWRRTLSRLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNSLIDFVDRK
Ga0209438_10070752	3300026285	Grasslands Soil	MRTVETPSAVGTGWRGSLSRLYRMIEALEASPMESLYDRVLRLEQEVSALKRNLPIGSVGHE
Ga0209438_10113925	3300026285	Grasslands Soil	MRTVETPSAAGTGWRRTLGQLYRMIEAAQTSPLESLYERVLRLEQQVSALKRNLPMGSVDHERVDWGQP
Ga0209438_10572282	3300026285	Grasslands Soil	MRTVETPSAVGTGWRRTLSKLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDRE
Ga0209240_10039619	3300026304	Grasslands Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAETSPLESLYERVLRLEQEVSALKRNLPMG
Ga0209240_11866992	3300026304	Grasslands Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDRE
Ga0257149_10052582	3300026355	Soil	MRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDWGQA
Ga0257167_10087512	3300026376	Soil	VSTQLTGANMRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEQEVSALKRNLPMGSVDHERVDWGQA
Ga0257169_10016993	3300026469	Soil	MRTVETPSAVGTGWRRTLSQLYRTIAAVEMSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0257165_10698772	3300026507	Soil	AVGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0179593_11093144	3300026555	Vadose Zone Soil	MRTVETPSAFGTGWRRILSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDNE
Ga0179587_101505471	3300026557	Vadose Zone Soil	MRTVETPSAASTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLDDRVLRLEQEISALKRNLPIGCVDHE
Ga0209526_100545533	3300028047	Forest Soil	MRTVETPSAAGTGWRRTLGQFYRMIEAIETSPLESLYDRVLRLEQEISALKRNLPIGSVDHD
Ga0257175_10602021	3300028673	Soil	TVETPSAVGTGWRRTLSQLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0222749_104331092	3300029636	Soil	VATQLKGANMRTVETPSAAGTGWRRTLSQLYRMIEAAQTSPLESLYERVLRLEREVFALKRNLPMGSVDHERVDWGQP
Ga0170834_1123665012	3300031057	Forest Soil	MRTVETPSAVGTGWRRTLSRLYRTMAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0170822_145905411	3300031122	Forest Soil	MRTVETPSAVGTGWRRSLGRLYRTIAAVETSPMEILYDRVLQLEQEVSALKRNLLIGSVDHE
Ga0170823_109328351	3300031128	Forest Soil	MRTVETPSAVGTGWRRIMSQLYRTIAAVETSPMEILYDRVLQLEQEVCALKRNLLIGSVDHE
Ga0307469_110133402	3300031720	Hardwood Forest Soil	AVSTQLTGANMRTAETPSAAGRGWRSTLIRFYHMIEALETSLEISPLESLYDRVLQLEQEVSALKRNSLTDSVDRK
Ga0307477_103855772	3300031753	Hardwood Forest Soil	MRTVETPSAAGKGWRNTLSQLYRMIEAAETSSLEILYDRVLRLEQEVSALKRNLPIGSPERE
Ga0307473_108450661	3300031820	Hardwood Forest Soil	MRTVETPSAVGTGWRRILSQLHRTIAAVETSPMEILYERVLQLEQEVSALKRNLLIGSVDHE
Ga0307471_1006544092	3300032180	Hardwood Forest Soil	TVETPSAAGTGWRRTLSELYRMIEAAETSPLESLYERVLWLEQEVSALKRNLPMG
Ga0307471_1024192411	3300032180	Hardwood Forest Soil	GANMRTAETPSAAGRGWRSALMQFYHMIEALETSLETSPLESLYDRVLQLEQEVSALKRNSLIDFVDRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074067

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences