Metagenome Family F074218

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F074218
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	44 residues
Representative Sequence	MKCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR
Number of Associated Samples	9
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	57.52 %
% of genes near scaffold ends (potentially truncated)	42.02 %
% of genes from short scaffolds (< 2000 bps)	93.28 %
Associated GOLD sequencing projects	9
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (97.479 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root (89.076 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (95.798 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.65% β-sheet: 0.00% Coil/Unstructured: 51.35%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
All Organisms	root	All Organisms	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
cellular organisms	root	All Organisms → cellular organisms	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	1.68 %
Zingiberales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1.68 %
Musaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	0.84 %
Musa	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	0.84 %
Musa acuminata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	0.84 %
Musa acuminata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	0.84 %
Musa acuminata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Sorghinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae	0.84 %
Musa acuminata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Sorghum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum	0.84 %
Musa acuminata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.48 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	0.84 %
Musa acuminata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	0.84 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2061766007\|rumenHiSeq_NODE_3552901_len_1229_cov_10_488202	Not Available	1279	Open in IMG/M
3300014486\|Ga0182004_10026939	Not Available	4087	Open in IMG/M
3300014486\|Ga0182004_10058712	Not Available	2118	Open in IMG/M
3300014486\|Ga0182004_10066784	Not Available	1872	Open in IMG/M
3300014486\|Ga0182004_10076465	Not Available	1649	Open in IMG/M
3300014486\|Ga0182004_10076924	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1640	Open in IMG/M
3300014486\|Ga0182004_10079947	Not Available	1582	Open in IMG/M
3300014486\|Ga0182004_10088130	Not Available	1442	Open in IMG/M
3300014486\|Ga0182004_10093195	Not Available	1368	Open in IMG/M
3300014486\|Ga0182004_10107172	Not Available	1198	Open in IMG/M
3300014486\|Ga0182004_10108265	Not Available	1187	Open in IMG/M
3300014486\|Ga0182004_10120675	Not Available	1073	Open in IMG/M
3300014486\|Ga0182004_10122993	Not Available	1054	Open in IMG/M
3300014486\|Ga0182004_10123122	Not Available	1053	Open in IMG/M
3300014486\|Ga0182004_10126546	Not Available	1026	Open in IMG/M
3300014486\|Ga0182004_10127320	Not Available	1021	Open in IMG/M
3300014486\|Ga0182004_10136591	Not Available	956	Open in IMG/M
3300014486\|Ga0182004_10141686	Not Available	924	Open in IMG/M
3300014486\|Ga0182004_10148677	Not Available	885	Open in IMG/M
3300014486\|Ga0182004_10154324	Not Available	856	Open in IMG/M
3300014486\|Ga0182004_10155324	Not Available	852	Open in IMG/M
3300014486\|Ga0182004_10161604	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	823	Open in IMG/M
3300014486\|Ga0182004_10166192	Not Available	803	Open in IMG/M
3300014486\|Ga0182004_10167621	Not Available	797	Open in IMG/M
3300014486\|Ga0182004_10173835	Not Available	772	Open in IMG/M
3300014486\|Ga0182004_10179144	Not Available	752	Open in IMG/M
3300014486\|Ga0182004_10184712	Not Available	733	Open in IMG/M
3300014486\|Ga0182004_10187440	Not Available	724	Open in IMG/M
3300014486\|Ga0182004_10194727	Not Available	702	Open in IMG/M
3300014486\|Ga0182004_10196259	Not Available	697	Open in IMG/M
3300014486\|Ga0182004_10198323	Not Available	691	Open in IMG/M
3300014486\|Ga0182004_10199715	Not Available	687	Open in IMG/M
3300014486\|Ga0182004_10201331	Not Available	682	Open in IMG/M
3300014486\|Ga0182004_10202292	Not Available	680	Open in IMG/M
3300014486\|Ga0182004_10204122	Not Available	675	Open in IMG/M
3300014486\|Ga0182004_10204759	Not Available	673	Open in IMG/M
3300014486\|Ga0182004_10205381	Not Available	671	Open in IMG/M
3300014486\|Ga0182004_10205546	Not Available	671	Open in IMG/M
3300014486\|Ga0182004_10205749	Not Available	670	Open in IMG/M
3300014486\|Ga0182004_10206062	Not Available	669	Open in IMG/M
3300014486\|Ga0182004_10207026	Not Available	667	Open in IMG/M
3300014486\|Ga0182004_10207647	Not Available	665	Open in IMG/M
3300014486\|Ga0182004_10208531	Not Available	663	Open in IMG/M
3300014486\|Ga0182004_10209839	Not Available	660	Open in IMG/M
3300014486\|Ga0182004_10210643	Not Available	657	Open in IMG/M
3300014486\|Ga0182004_10213409	Not Available	651	Open in IMG/M
3300014486\|Ga0182004_10213767	Not Available	650	Open in IMG/M
3300014486\|Ga0182004_10215642	Not Available	645	Open in IMG/M
3300014486\|Ga0182004_10217572	Not Available	640	Open in IMG/M
3300014486\|Ga0182004_10219000	Not Available	637	Open in IMG/M
3300014486\|Ga0182004_10219080	Not Available	637	Open in IMG/M
3300014486\|Ga0182004_10219461	Not Available	636	Open in IMG/M
3300014486\|Ga0182004_10220354	Not Available	634	Open in IMG/M
3300014486\|Ga0182004_10220389	Not Available	634	Open in IMG/M
3300014486\|Ga0182004_10223681	Not Available	626	Open in IMG/M
3300014486\|Ga0182004_10224971	Not Available	624	Open in IMG/M
3300014486\|Ga0182004_10225751	Not Available	622	Open in IMG/M
3300014486\|Ga0182004_10228622	Not Available	616	Open in IMG/M
3300014486\|Ga0182004_10228757	Not Available	615	Open in IMG/M
3300014486\|Ga0182004_10229347	Not Available	614	Open in IMG/M
3300014486\|Ga0182004_10230105	Not Available	613	Open in IMG/M
3300014486\|Ga0182004_10230163	Not Available	612	Open in IMG/M
3300014486\|Ga0182004_10230953	Not Available	611	Open in IMG/M
3300014486\|Ga0182004_10233296	Not Available	606	Open in IMG/M
3300014486\|Ga0182004_10233688	Not Available	605	Open in IMG/M
3300014486\|Ga0182004_10235749	Not Available	601	Open in IMG/M
3300014486\|Ga0182004_10236627	Not Available	599	Open in IMG/M
3300014486\|Ga0182004_10237535	Not Available	598	Open in IMG/M
3300014486\|Ga0182004_10237580	Not Available	597	Open in IMG/M
3300014486\|Ga0182004_10241280	Not Available	591	Open in IMG/M
3300014486\|Ga0182004_10242171	Not Available	589	Open in IMG/M
3300014486\|Ga0182004_10247230	Not Available	580	Open in IMG/M
3300014486\|Ga0182004_10251221	Not Available	572	Open in IMG/M
3300014486\|Ga0182004_10251994	Not Available	571	Open in IMG/M
3300014486\|Ga0182004_10253337	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Zingiberales → Musaceae → Musa → Musa acuminata	569	Open in IMG/M
3300014486\|Ga0182004_10254543	Not Available	567	Open in IMG/M
3300014486\|Ga0182004_10254764	Not Available	566	Open in IMG/M
3300014486\|Ga0182004_10255547	Not Available	565	Open in IMG/M
3300014486\|Ga0182004_10255711	Not Available	565	Open in IMG/M
3300014486\|Ga0182004_10256912	Not Available	563	Open in IMG/M
3300014486\|Ga0182004_10259165	Not Available	559	Open in IMG/M
3300014486\|Ga0182004_10259353	Not Available	559	Open in IMG/M
3300014486\|Ga0182004_10262250	Not Available	554	Open in IMG/M
3300014486\|Ga0182004_10266219	Not Available	548	Open in IMG/M
3300014486\|Ga0182004_10266441	Not Available	548	Open in IMG/M
3300014486\|Ga0182004_10266608	Not Available	547	Open in IMG/M
3300014486\|Ga0182004_10267857	Not Available	545	Open in IMG/M
3300014486\|Ga0182004_10268200	Not Available	545	Open in IMG/M
3300014486\|Ga0182004_10268889	Not Available	544	Open in IMG/M
3300014486\|Ga0182004_10271441	Not Available	540	Open in IMG/M
3300014486\|Ga0182004_10272079	Not Available	539	Open in IMG/M
3300014486\|Ga0182004_10272988	Not Available	538	Open in IMG/M
3300014486\|Ga0182004_10282230	Not Available	525	Open in IMG/M
3300014486\|Ga0182004_10285251	Not Available	521	Open in IMG/M
3300014486\|Ga0182004_10285308	Not Available	521	Open in IMG/M
3300014486\|Ga0182004_10288020	Not Available	517	Open in IMG/M
3300014486\|Ga0182004_10288782	Not Available	516	Open in IMG/M
3300014486\|Ga0182004_10289196	Not Available	516	Open in IMG/M
3300014486\|Ga0182004_10292473	Not Available	512	Open in IMG/M
3300014486\|Ga0182004_10293027	Not Available	511	Open in IMG/M
3300014486\|Ga0182004_10293577	Not Available	510	Open in IMG/M
3300014486\|Ga0182004_10294255	Not Available	509	Open in IMG/M
3300014486\|Ga0182004_10298001	Not Available	505	Open in IMG/M
3300015261\|Ga0182006_1238442	Not Available	598	Open in IMG/M
3300015262\|Ga0182007_10105131	Not Available	937	Open in IMG/M
3300015262\|Ga0182007_10421430	Not Available	511	Open in IMG/M
3300015265\|Ga0182005_1032767	Not Available	1414	Open in IMG/M
3300015265\|Ga0182005_1179119	Not Available	629	Open in IMG/M
3300015265\|Ga0182005_1258451	Not Available	541	Open in IMG/M
3300015265\|Ga0182005_1295230	Not Available	510	Open in IMG/M
3300015292\|Ga0182141_1025565	Not Available	734	Open in IMG/M
3300017407\|Ga0182220_1076531	Not Available	556	Open in IMG/M
3300027033\|Ga0209372_1020587	Not Available	783	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	99.16%
Mammals	Host-Associated → Mammals	0.84%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	89.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.72%
Phyllosphere	Host-Associated → Plants → Phyllosphere	2.52%
Digestive System	Host-Associated → Mammals → Digestive System	0.84%
Phylloplane	Host-Associated → Plants → Phylloplane	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	89.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.72%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	2.52%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	0.84%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	89.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.72%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	2.52%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	0.84%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Root	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root	89.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.72%
Miscanthus Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere	2.52%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	0.84%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.84%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2061766007	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470	Host-Associated	Open in IMG/M
3300014486	Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG	Host-Associated	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015292	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015347	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017407	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300027033	Agave microbial communities from Guanajuato, Mexico - At.P.e (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
_HiSeq_22814100	2061766007	Bovine Rumen	MKCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR
Ga0182004_100269395	3300014486	Root	MKCIIWNLALVQLEIVLVLVQYSCMVCAQCTIGSEIVVEVPDGTPSTTRNTWLFNV*
Ga0182004_100587124	3300014486	Root	MKCIIWNLASVQLEIVLVSVPDRCMVCAQCTIGPEIIVEVSDGTPK*
Ga0182004_100667841	3300014486	Root	MKCIILNLASVQLEIVLVSVQDSCMVCAECTIGLEIVVEVPDGTPS*
Ga0182004_100764651	3300014486	Root	MKCIIWNLASVQLEIILVLVQDSCMVCAQCTIGSEFVVEVPDGTPR*
Ga0182004_100769241	3300014486	Root	KCVIWNLGSVQLEIVLVSVQDRRVVCAQCTIGSEIVVEVPNRTPR*
Ga0182004_100799471	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSCMLCAQCTIGSEIIVEVPGGTPR*
Ga0182004_100881301	3300014486	Root	MKCIIWNLASAQLEIVLVSVHDSCMVCAQCTIGSEIVVEVLDGTPR*
Ga0182004_100931952	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDTCMVCAQCTIGSQIIVKVPDGTPR*
Ga0182004_101071721	3300014486	Root	VQLEIVLVLVQDSCMVCAQCTIGSEIIVEVLDGTPR*
Ga0182004_101082651	3300014486	Root	MKCIIWNLPSVELEILLVSVQDSCMVCAKCTIGSEIVVEVPNGTPR*
Ga0182004_101206752	3300014486	Root	MKCIIGNLASVQLEIVLVPVQDSYMVCAQCTIGSETIVEVPDCTPR*
Ga0182004_101229931	3300014486	Root	LEIVLVSVQDSCMVCAQSTIGSEIVVEVPDGTPR*
Ga0182004_101231221	3300014486	Root	MKCIIWNLGSVQLEIVLVLVQDSCMVCAQCTIGLEITVEVPDGTPR*
Ga0182004_101265461	3300014486	Root	MKFVIWNLASVQLEIVLVSVQDSCMVCAQCTTGSGIVVEVPGGTPR*
Ga0182004_101273201	3300014486	Root	MKCIIWNLALVQLEIVLVSVQDKCMVCAQCTIGSETVVEVPDGTPR*
Ga0182004_101365912	3300014486	Root	MKCIRWNLASVQLEIVLVSVQDSCMVCAQCTIGLETVVEVPDGTPR*
Ga0182004_101416861	3300014486	Root	MTCIIWNLALVQLVIVLVLVQNMVCAQCTIGLKIVVEVPDGTPR*
Ga0182004_101486771	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIIVEVPDATPW*
Ga0182004_101543241	3300014486	Root	MKCIIWNLSSVQLEIVLVSVQDGCMVCAQCTIGLEIIVEVPDGTPR*
Ga0182004_101553241	3300014486	Root	MELLDEGIIWNLASVQLEIVLVLVQDSCMVCAQCTIGSQIVVEVPDGTPR*
Ga0182004_101616041	3300014486	Root	MNARDVLIKCIIWNLALVQLEIILVLVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_101661921	3300014486	Root	MKCILWNLASVQLEIVLVSVQDSCMVCAQSTIGSEIIVEVPDVTPR*
Ga0182004_101676211	3300014486	Root	MNCVIWNLALVQLEIVLVSVQDRCMVCAQCTTGSETIVEVPNGT
Ga0182004_101738352	3300014486	Root	MKCIIWNLASVQLDLVLVSVQDSCMVCASCTIGSEMVVEVPDGTPR*
Ga0182004_101770511	3300014486	Root	NLASVQLEIVLVSVQDSYMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_101791441	3300014486	Root	IIWNLALVQLEIVLVSVQDSCMVCAQCTVGSDIVVEAPVNTPR*
Ga0182004_101797672	3300014486	Root	MKCIIWNLASVELEMVLVSVQDSYKVCAKCTIGSEIVVEVPDGTPR*
Ga0182004_101847122	3300014486	Root	MKCIILNLGSVQLEIVLVSEQDMVCAQCTIGSEFVVEVPDGTPR*
Ga0182004_101874401	3300014486	Root	MKCIIWNLALVQLEIVLVSVQDSCMVCAQCTIGSEIVLEVPDGTPR*
Ga0182004_101947272	3300014486	Root	MDCRCTRWNYKMKCIIWNLASAQLEIVLVSVQHSCMVCAQCTIGSEIVVEVLDGAPR*
Ga0182004_101962591	3300014486	Root	MKCIIWNLTSAQLEIVLVSVQDSCMVCAQCTIGSEVIVEVPDGTPR*
Ga0182004_101983231	3300014486	Root	VQLEIVLVSVQDSCVVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_101997152	3300014486	Root	MKCVIWNLASVQLEIVLVSVQDSCMVCAQGTIGSEIIVEVLDGTPR*
Ga0182004_102013311	3300014486	Root	MKCIIWNLALVQLEIVLVSVQDSCMVCAQCTIGSEIVV
Ga0182004_102022921	3300014486	Root	MKCIIWNLGSVQLEIVVVSVQDSCMVCAQCTIGSEIILEVPDGTPR*
Ga0182004_102041221	3300014486	Root	MKCIIWNLALIQLEIVLVSEQDSCMVCAQCTIGTEIVVDVPDGTPR*
Ga0182004_102047591	3300014486	Root	IWNLASVQLEIVLVSVQDSCMVCAQCTIGSEFVVEVPDGTPR*
Ga0182004_102053811	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDKCMVCAQCTIGSETVVEVPDGTPG*
Ga0182004_102055461	3300014486	Root	MKCIIWNLASVQVEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102057491	3300014486	Root	MKCIIWNLALVQLEIVLVSVQDSCMVCVQCTIGSEIVVEVPDGTPR*
Ga0182004_102060621	3300014486	Root	MKCITWNLVLVQLEIVLVSVQDRCVVCAQCNIGLETIVEVPDGTPR*
Ga0182004_102070261	3300014486	Root	VKCIIWNLASVQLEIVLVSVQDMVCARCTIGSEIVVEVPDGTPR*
Ga0182004_102076471	3300014486	Root	MNCIIWNLASAQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPDG
Ga0182004_102085311	3300014486	Root	MKCIIWNLASVQLEIVLVLVQDSCKVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102098391	3300014486	Root	MKCIIWNLVTVQLEIVLVLVQDSCMVCAQCTIGSEIIMEVPDVTPR*
Ga0182004_102106431	3300014486	Root	MKCIIRNLALVQLQIVLVLVQDSCMVCAQSTIGSEIVVEVPDGTPR*
Ga0182004_102134091	3300014486	Root	MKCIIWNLASVQLEIVLVLVQDKCMFCAQCTIGSEIVVEVADGSPG*
Ga0182004_102137671	3300014486	Root	LEIVLVSEQDRCVVYALCTIGSQTVVEVPDGTPR*
Ga0182004_102156422	3300014486	Root	MKCIIWNLASVQLEIVLVSEKDSCMVCAQCTIGSEIVVEVPDGSPR*
Ga0182004_102175721	3300014486	Root	MKCIIWNLASAQLEIVLVSVQDSCMVCAQCTIGSEI
Ga0182004_102190001	3300014486	Root	MKCIIWNLASVQLEIVLVSVQEKCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102190801	3300014486	Root	NLASVQLEIVLVSVQAMVCAQCTIGSEFVVEVPDGTPR*
Ga0182004_102194611	3300014486	Root	LEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTLR*
Ga0182004_102203541	3300014486	Root	QLEIVLVSVKDRCMVCAQCTIGSETVVEVPDGTPR*
Ga0182004_102203891	3300014486	Root	MKYIIWNLASAQLEIVLVSVQDSCMVCAQSTVGSEIVVEVPDGTPR*
Ga0182004_102236812	3300014486	Root	MKFIIWNLASVQLQIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102249711	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSRMVCVQCTIGSEIIVEVPYGTPR*
Ga0182004_102257511	3300014486	Root	MKCIIWNLPSAQLEIVLVSVQDSCMVCAQCTIGSE
Ga0182004_102286221	3300014486	Root	MKCIIWNLASVQFEIILVSVQDSWMVCAQCTIGLEIVVDVPDGTPR*
Ga0182004_102287571	3300014486	Root	KCVICNLASVQLEIVLVSVQDRCIVCAQCTIGSETVVEVPNCTPR*
Ga0182004_102293472	3300014486	Root	MKCIIRNLASVQLEIVLVSVKDSCMVCAQCTVGSEIVVEVLDGTPR*
Ga0182004_102301051	3300014486	Root	LEIVLVSVQDSCMVCAQCTIGSETVVEVPDGTPR*
Ga0182004_102301631	3300014486	Root	QLEIVIVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102309531	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDNCMVCAQCTIGSETVVEVLDGTPR*
Ga0182004_102332962	3300014486	Root	WNLASVQLEIVLVSVQDSCMVCAQCTIGSEIIVEVPDGTPT*
Ga0182004_102336882	3300014486	Root	MKCIIWNLASDQLEIVLVSVQDKCMVFAQCTIGSETVVEVPGGTPR*
Ga0182004_102357491	3300014486	Root	ASDQLEIVLVSVQDSCMVCAQCRIGSEIVVEVPDGTPR*
Ga0182004_102366271	3300014486	Root	MKCIIWNLASVQMEIVLVSVQDSCMVCAQCTIGSEIIVEVPDGTPS*
Ga0182004_102375352	3300014486	Root	MKYIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSETVVEVPDGTPR*
Ga0182004_102375801	3300014486	Root	MKCIIIWNLASVQLEIVLVLVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102412801	3300014486	Root	MKCIIWNLASVLLEIVLVLVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102421712	3300014486	Root	MKCIIWNLASVLLEIVLVLVQDMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102472302	3300014486	Root	LEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTTR*
Ga0182004_102512211	3300014486	Root	MKCIIWNLASIQLEIVLVSVQDSYMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102519942	3300014486	Root	SVQSEIVLVSVQDSCMVCAQCTIGSETVVEVPDGTPR*
Ga0182004_102533372	3300014486	Root	LASVELEIVLVSVQDRCIVCAQCTIWSETVVEVHDGTPR*
Ga0182004_102545431	3300014486	Root	IIWNLASVQLEILLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102547641	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVEVLDGTPR*
Ga0182004_102555471	3300014486	Root	MKVIIWNLASVQLEIVLVSVQDSCVVCAQCTIGSEIV
Ga0182004_102557111	3300014486	Root	CIIWNLASVQLEIVLVLVQDMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102569121	3300014486	Root	MKYIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102576751	3300014486	Root	IIWNLASVQLEIVLVSGQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102591651	3300014486	Root	KCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVDVPDGTPT*
Ga0182004_102593531	3300014486	Root	MKCIIWNLASVLLEIVLVLVQDSCMVCAQCTIGSEIVVEVADGTPR*
Ga0182004_102622502	3300014486	Root	KCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSETVVEVPEGTPR*
Ga0182004_102662192	3300014486	Root	MKCIVWNLASVQLEIVLALVQDSCMVCAQCTIGPEIVVEVPDGTPR*
Ga0182004_102664411	3300014486	Root	CIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSKIIVEVPDGTPR*
Ga0182004_102666081	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSCMVCAQCTVGSEIIVEVRDGTPR*
Ga0182004_102678571	3300014486	Root	MKCIIWNLALVLFEIVLVSVQDSCMVCAQCTIGSEIVV
Ga0182004_102682001	3300014486	Root	MKCIKWNRASVQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102688891	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDMVCAQCTIGSEFAVEVPDGTPR*
Ga0182004_102714411	3300014486	Root	MKCIIWNLASVQLEIVLVSLQDRCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102720791	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIIVEVP
Ga0182004_102729881	3300014486	Root	VKCIIWNFASVQLEIVLVSVQDRCMVCAQCTIGSETVVEVPDGTPRCR
Ga0182004_102822301	3300014486	Root	QLEVVFVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182004_102852511	3300014486	Root	MKCIIWNLASVQLEIVLVSVQDSCMVYAQWIIGSEIVVKVPVGTPR*
Ga0182004_102853081	3300014486	Root	MKCIIWNLASAQLEIVLVSVQDSCMVCAECTIGSEIIVEVSDGTPR*
Ga0182004_102880201	3300014486	Root	MKCIILNLASVQLEIVLVLVQDSCTVCAQCTIGSEISVEVPDGTPR*
Ga0182004_102887821	3300014486	Root	MKCITWNLASVQLEIVLVLVQDSCMVCAQCTIGSEIVMEVPDSTPRVKRLN*
Ga0182004_102891961	3300014486	Root	LEIVLVSVQDSCMVCAQCTIGSEIVVEVPDSTPR*
Ga0182004_102911341	3300014486	Root	LASVQGEIVLVSVQDRCMDCAQCTIGSETIVKVPDGTPR*
Ga0182004_102924732	3300014486	Root	LASVQLEIVGSVQDSCMVCAECSIGLEIIVEVADDTPR*
Ga0182004_102930271	3300014486	Root	NLASVQLEIVLVSVQDRCMVCAQCTIGSEKVVEVPDGTPR*
Ga0182004_102935771	3300014486	Root	LVQLEIVLVSVQDSCMVCAQCTIGSENVVEVTDGTPR*
Ga0182004_102942552	3300014486	Root	MKCIIWNLASVQLEIVLVLVQDMVCAQCTIGSETVVEVPDGTPR*
Ga0182004_102980011	3300014486	Root	CIIWNLASVQLEIVLVSVQDMVCAQCTIGSEIVVEVPDGTLR*
Ga0182006_11237631	3300015261	Rhizosphere	MKCIIWNLDSVQLEIVLVSVQDSCMVCAQCTIGSEI
Ga0182006_12384421	3300015261	Rhizosphere	MKCIIWNLTSVQLEIVLVSVQDSWMVCAQCTIGSEIVVEVPD
Ga0182007_101051312	3300015262	Rhizosphere	MKCIIWNLDSVQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPNGTPR*
Ga0182007_104214301	3300015262	Rhizosphere	MKCIIWNLASAQLEIVLVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182005_10327671	3300015265	Rhizosphere	MKCIVWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVEIPDGTPR*
Ga0182005_11791191	3300015265	Rhizosphere	NLALVHLEIVFVSVQDSCMVCAQCTIGSEIVVEVPDGTPR*
Ga0182005_12584511	3300015265	Rhizosphere	MNCIIWNLASVQLEIVLVLVQDWCMVCAQCTIGLETVVEVPDGTPR*
Ga0182005_12952301	3300015265	Rhizosphere	RKCIIWNLASVQLEIVLVSVQDSCMVCAQCTIGSEIVVKVQDGTPR*
Ga0182141_10255651	3300015292	Miscanthus Phyllosphere	GSWGNLVSVCLEIVLVSVHDWCMVCAKRTTRSEIVLEAPDGTPR*
Ga0182177_11674291	3300015347	Miscanthus Phyllosphere	VHLEIVLVSVQDRFMVCAKRTIGSEIVVDAPNRTPR*
Ga0182220_10765311	3300017407	Miscanthus Phyllosphere	TDLETVLVSVQDRHTVCAKCTIGSEIVVDAPDGTPRCQG
Ga0209372_10205871	3300027033	Agave	ASVQLEIVLVSVQDSCMVCVQCTIGSEIVVEVPDGTPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F074218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences