Metagenome / Metatranscriptome Family F074226

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Overview

Basic Information
Family ID	F074226
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	47 residues
Representative Sequence	MVELKQDRKARHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Number of Associated Samples	29
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	52.10 %
% of genes near scaffold ends (potentially truncated)	20.17 %
% of genes from short scaffolds (< 2000 bps)	79.83 %
Associated GOLD sequencing projects	26
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.462 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (78.992 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (56.303 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 22.67% Coil/Unstructured: 57.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF01844	HNH	26.89
PF13392	HNH_3	3.36
PF01807	zf-CHC2	2.52
PF13481	AAA_25	1.68
PF01507	PAPS_reduct	1.68
PF03354	TerL_ATPase	0.84
PF01381	HTH_3	0.84
PF05521	Phage_H_T_join	0.84
PF07463	NUMOD4	0.84
PF04860	Phage_portal	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	2.52
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
All Organisms	root	All Organisms	44.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Viruses	superkingdom	All Organisms → Viruses	31.09 %
cellular organisms	root	All Organisms → cellular organisms	13.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	13.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.72 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	5.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	6.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6.72 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Prevotellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	2.52 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Prevotella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	2.52 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
unclassified Prevotella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella	1.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.09 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	5.88 %
Prevotella sp. tf2-5	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	1.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300012007\|Ga0120382_1004142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	5571	Open in IMG/M
3300012016\|Ga0120387_1001214	Not Available	18815	Open in IMG/M
3300012016\|Ga0120387_1145063	Not Available	813	Open in IMG/M
3300012979\|Ga0123348_10246945	Not Available	971	Open in IMG/M
3300012983\|Ga0123349_10540145	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	814	Open in IMG/M
3300012983\|Ga0123349_10667847	Not Available	730	Open in IMG/M
3300012983\|Ga0123349_10859232	Not Available	643	Open in IMG/M
3300014043\|Ga0120385_1082632	Not Available	703	Open in IMG/M
3300014826\|Ga0120386_1000188	Not Available	52357	Open in IMG/M
3300021254\|Ga0223824_10753622	Not Available	750	Open in IMG/M
3300021255\|Ga0223825_10012310	Not Available	963	Open in IMG/M
3300021255\|Ga0223825_10472171	Not Available	802	Open in IMG/M
3300021255\|Ga0223825_10932763	Not Available	6912	Open in IMG/M
3300021255\|Ga0223825_12107783	Not Available	779	Open in IMG/M
3300021255\|Ga0223825_13102789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	9616	Open in IMG/M
3300021256\|Ga0223826_10002310	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	29708	Open in IMG/M
3300021256\|Ga0223826_10195263	All Organisms → Viruses → Predicted Viral	1772	Open in IMG/M
3300021256\|Ga0223826_10379658	All Organisms → Viruses → Predicted Viral	1166	Open in IMG/M
3300021387\|Ga0223845_12935557	Not Available	890	Open in IMG/M
3300021399\|Ga0224415_10059212	All Organisms → Viruses → Predicted Viral	3535	Open in IMG/M
3300021400\|Ga0224422_10498265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	66661	Open in IMG/M
3300021400\|Ga0224422_11608372	All Organisms → Viruses → Predicted Viral	1227	Open in IMG/M
3300021426\|Ga0224482_10444709	Not Available	1072	Open in IMG/M
3300021431\|Ga0224423_10001339	Not Available	39086	Open in IMG/M
3300024345\|Ga0255062_10536644	Not Available	569	Open in IMG/M
3300024486\|Ga0255059_10536045	Not Available	549	Open in IMG/M
3300028533\|Ga0233386_1035126	All Organisms → Viruses → Predicted Viral	1026	Open in IMG/M
3300028591\|Ga0247611_10191116	Not Available	2168	Open in IMG/M
3300028591\|Ga0247611_10636034	Not Available	1134	Open in IMG/M
3300028591\|Ga0247611_10784351	All Organisms → Viruses → Predicted Viral	1000	Open in IMG/M
3300028805\|Ga0247608_10000938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	43185	Open in IMG/M
3300028805\|Ga0247608_10232302	All Organisms → Viruses → Predicted Viral	1814	Open in IMG/M
3300028805\|Ga0247608_10504905	Not Available	1189	Open in IMG/M
3300028805\|Ga0247608_10505388	All Organisms → Viruses → Predicted Viral	1188	Open in IMG/M
3300028805\|Ga0247608_10694468	Not Available	980	Open in IMG/M
3300028833\|Ga0247610_10385487	All Organisms → Viruses → Predicted Viral	1468	Open in IMG/M
3300028833\|Ga0247610_11211337	Not Available	747	Open in IMG/M
3300028833\|Ga0247610_11832000	Not Available	565	Open in IMG/M
3300028886\|Ga0256407_10078856	Not Available	3067	Open in IMG/M
3300028888\|Ga0247609_11317056	Not Available	721	Open in IMG/M
3300028888\|Ga0247609_11935874	Not Available	556	Open in IMG/M
3300028888\|Ga0247609_12038497	Not Available	536	Open in IMG/M
3300031760\|Ga0326513_10047017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	3335	Open in IMG/M
3300031760\|Ga0326513_10086400	All Organisms → Viruses → Predicted Viral	2538	Open in IMG/M
3300031760\|Ga0326513_10118806	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	2197	Open in IMG/M
3300031760\|Ga0326513_10249605	All Organisms → Viruses → Predicted Viral	1554	Open in IMG/M
3300031760\|Ga0326513_10326375	All Organisms → Viruses → Predicted Viral	1362	Open in IMG/M
3300031760\|Ga0326513_10430327	All Organisms → Viruses → Predicted Viral	1183	Open in IMG/M
3300031760\|Ga0326513_10439765	All Organisms → Viruses → Predicted Viral	1170	Open in IMG/M
3300031760\|Ga0326513_10518330	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1073	Open in IMG/M
3300031760\|Ga0326513_10602566	Not Available	989	Open in IMG/M
3300031760\|Ga0326513_10611609	Not Available	981	Open in IMG/M
3300031760\|Ga0326513_10638537	Not Available	958	Open in IMG/M
3300031760\|Ga0326513_10707121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	905	Open in IMG/M
3300031760\|Ga0326513_10716847	Not Available	898	Open in IMG/M
3300031760\|Ga0326513_10738444	Not Available	883	Open in IMG/M
3300031760\|Ga0326513_10756435	Not Available	871	Open in IMG/M
3300031760\|Ga0326513_10925816	Not Available	774	Open in IMG/M
3300031760\|Ga0326513_11801443	Not Available	511	Open in IMG/M
3300031760\|Ga0326513_11849400	Not Available	502	Open in IMG/M
3300031853\|Ga0326514_10077932	All Organisms → Viruses → Predicted Viral	2587	Open in IMG/M
3300031853\|Ga0326514_10082984	All Organisms → Viruses → Predicted Viral	2518	Open in IMG/M
3300031853\|Ga0326514_10096085	All Organisms → Viruses → Predicted Viral	2363	Open in IMG/M
3300031853\|Ga0326514_10189643	All Organisms → Viruses → Predicted Viral	1741	Open in IMG/M
3300031853\|Ga0326514_10199318	Not Available	1702	Open in IMG/M
3300031853\|Ga0326514_10356154	All Organisms → Viruses → Predicted Viral	1286	Open in IMG/M
3300031853\|Ga0326514_10457731	All Organisms → Viruses → Predicted Viral	1129	Open in IMG/M
3300031853\|Ga0326514_10568839	All Organisms → Viruses → Predicted Viral	1004	Open in IMG/M
3300031853\|Ga0326514_10605007	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	971	Open in IMG/M
3300031853\|Ga0326514_10757037	Not Available	855	Open in IMG/M
3300031853\|Ga0326514_10820123	Not Available	816	Open in IMG/M
3300031853\|Ga0326514_10972999	Not Available	736	Open in IMG/M
3300031853\|Ga0326514_11007702	Not Available	720	Open in IMG/M
3300031853\|Ga0326514_11068810	Not Available	694	Open in IMG/M
3300031853\|Ga0326514_11136963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	668	Open in IMG/M
3300031853\|Ga0326514_11292936	Not Available	616	Open in IMG/M
3300031853\|Ga0326514_11516043	Not Available	556	Open in IMG/M
3300031853\|Ga0326514_11573287	Not Available	542	Open in IMG/M
3300031867\|Ga0326511_10100803	All Organisms → Viruses → Predicted Viral	2620	Open in IMG/M
3300031867\|Ga0326511_10140440	All Organisms → Viruses → Predicted Viral	2251	Open in IMG/M
3300031867\|Ga0326511_10168424	All Organisms → Viruses → Predicted Viral	2068	Open in IMG/M
3300031867\|Ga0326511_10306281	All Organisms → Viruses → Predicted Viral	1555	Open in IMG/M
3300031867\|Ga0326511_10491142	All Organisms → Viruses → Predicted Viral	1221	Open in IMG/M
3300031867\|Ga0326511_10996466	Not Available	817	Open in IMG/M
3300031867\|Ga0326511_11065447	Not Available	784	Open in IMG/M
3300031867\|Ga0326511_11065731	Not Available	784	Open in IMG/M
3300031867\|Ga0326511_11126631	Not Available	757	Open in IMG/M
3300031867\|Ga0326511_11454471	Not Available	644	Open in IMG/M
3300031867\|Ga0326511_11501202	Not Available	631	Open in IMG/M
3300031992\|Ga0310694_10320658	All Organisms → Viruses → Predicted Viral	1589	Open in IMG/M
3300031992\|Ga0310694_10541674	All Organisms → Viruses → Predicted Viral	1188	Open in IMG/M
3300031992\|Ga0310694_11500157	Not Available	617	Open in IMG/M
3300031994\|Ga0310691_10139881	All Organisms → Viruses → Predicted Viral	2578	Open in IMG/M
3300031994\|Ga0310691_10215781	Not Available	2085	Open in IMG/M
3300031994\|Ga0310691_10311095	Not Available	1733	Open in IMG/M
3300031994\|Ga0310691_10903811	Not Available	941	Open in IMG/M
3300031994\|Ga0310691_11967758	Not Available	550	Open in IMG/M
3300032030\|Ga0310697_10411822	All Organisms → Viruses → Predicted Viral	1404	Open in IMG/M
3300032030\|Ga0310697_11773544	Not Available	564	Open in IMG/M
3300032038\|Ga0326512_10094774	All Organisms → Viruses → Predicted Viral	2342	Open in IMG/M
3300032038\|Ga0326512_10139984	All Organisms → Viruses → Predicted Viral	1930	Open in IMG/M
3300032038\|Ga0326512_10156520	All Organisms → Viruses → Predicted Viral	1824	Open in IMG/M
3300032038\|Ga0326512_10174370	All Organisms → Viruses → Predicted Viral	1724	Open in IMG/M
3300032038\|Ga0326512_10226132	All Organisms → Viruses → Predicted Viral	1504	Open in IMG/M
3300032038\|Ga0326512_10243260	Not Available	1447	Open in IMG/M
3300032038\|Ga0326512_10437723	All Organisms → Viruses → Predicted Viral	1041	Open in IMG/M
3300032038\|Ga0326512_10460047	All Organisms → Viruses → Predicted Viral	1011	Open in IMG/M
3300032038\|Ga0326512_10534023	Not Available	925	Open in IMG/M
3300032038\|Ga0326512_10557304	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	901	Open in IMG/M
3300032038\|Ga0326512_10613052	Not Available	850	Open in IMG/M
3300032038\|Ga0326512_10635158	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	831	Open in IMG/M
3300032038\|Ga0326512_10770494	Not Available	735	Open in IMG/M
3300032038\|Ga0326512_10824839	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	703	Open in IMG/M
3300032038\|Ga0326512_10884298	Not Available	672	Open in IMG/M
3300032038\|Ga0326512_10938993	Not Available	646	Open in IMG/M
3300032038\|Ga0326512_10968907	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	633	Open in IMG/M
3300032038\|Ga0326512_11027712	Not Available	608	Open in IMG/M
3300032038\|Ga0326512_11126947	Not Available	571	Open in IMG/M
3300032038\|Ga0326512_11156797	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	95.80%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	4.20%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	95.80%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	4.20%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	78.99%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	12.61%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	4.20%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	3.36%
Elk Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300012007	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009	Host-Associated	Open in IMG/M
3300012016	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397	Host-Associated	Open in IMG/M
3300012979	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung B1 Day 1 Metagenome	Host-Associated	Open in IMG/M
3300012983	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome	Host-Associated	Open in IMG/M
3300014043	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1248	Host-Associated	Open in IMG/M
3300014826	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1366	Host-Associated	Open in IMG/M
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated	Open in IMG/M
3300021400	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated	Open in IMG/M
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024486	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300028533	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G4	Host-Associated	Open in IMG/M
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028805	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated	Open in IMG/M
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated	Open in IMG/M
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated	Open in IMG/M
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated	Open in IMG/M
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated	Open in IMG/M
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0120382_10041427	3300012007	Sheep Rumen	MVTLTNDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMMETI*
Ga0120387_100121413	3300012016	Sheep Rumen	MVELKQDRKANRMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEATI*
Ga0120387_11450632	3300012016	Sheep Rumen	MVELKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI*
Ga0123348_102469452	3300012979	Fecal	MVTLKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI*
Ga0123349_105401452	3300012983	Fecal	MMEMVELKRDRKANRMWLITTTDSDGFHRQLPISHDDMTDLMRQWIEETI*
Ga0123349_106678471	3300012983	Fecal	ELKQDRKTRHMWLITTTDSEGFHRQLSISHDDMTDLMRQWIEETI*
Ga0123349_108592321	3300012983	Fecal	MVELKQDRKTRHMWLITTTDSEGFHRQLSISHDDMTDLMRQW
Ga0120385_10826322	3300014043	Sheep Rumen	MVELKQDRKASNVWLITTTDSEGFHRQLPISYDEMTELMRQWMEATI*
Ga0120386_100018827	3300014826	Sheep Rumen	MVELKKDRKASRTWLITVTDSEGFHRQLAISYDDMTDLMRQWIEETI*
Ga0223824_107536222	3300021254	Cattle And Sheep Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEETI
Ga0223825_100123102	3300021255	Cattle And Sheep Rumen	MVELKQDRKAHKVWLITTTDSEGYHRQLPISHDDMTDLMRQWMEATI
Ga0223825_104721712	3300021255	Cattle And Sheep Rumen	MVELKRDRKAHNIWLITTTDSEGYHRQLPISHDDMTDLMRQWMEATI
Ga0223825_109327635	3300021255	Cattle And Sheep Rumen	MVELKQDRKTRRMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0223825_121077832	3300021255	Cattle And Sheep Rumen	MVELKRDRKARHMWLITTTDSDGFHRQLPISHDDMTDLMRQWMEATI
Ga0223825_131027892	3300021255	Cattle And Sheep Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0223826_1000231035	3300021256	Cattle And Sheep Rumen	MVELKQDRKAHNIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0223826_101952632	3300021256	Cattle And Sheep Rumen	MVELTRDRKARHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0223826_103796581	3300021256	Cattle And Sheep Rumen	ATLWARMVELKQDRKAHKVWLITTTDSEGYHRQLPISHDDMTDLMRQWMEATI
Ga0223845_129355573	3300021387	Cattle And Sheep Rumen	MVELKQDRKAHKVWLITTTDSEGFHRQLSISHDDMTDLMRQWMEATI
Ga0224415_100592122	3300021399	Cattle And Sheep Rumen	MVELKKDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0224422_1049826527	3300021400	Cattle And Sheep Rumen	MVELTRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETV
Ga0224422_116083723	3300021400	Cattle And Sheep Rumen	MVTLTNDRKTRHMWLITTTDSEGFHRKLPISHDDMPDLMRQWM
Ga0224482_104447092	3300021426	Cattle And Sheep Rumen	MVELKRDRKARHMWLIATTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0224423_1000133958	3300021431	Cattle And Sheep Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0255062_105366442	3300024345	Rumen	MVELKRDRKASHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0255059_105360452	3300024486	Rumen	MVELKQDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMQQWMEETI
Ga0233386_10351261	3300028533	Elk Feces	MVELTRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWIEETI
Ga0247611_101911163	3300028591	Rumen	MVELKQDRKARHMWLITTTDSEGSHRQLPISHDDMTDLMRQWMEETI
Ga0247611_106360342	3300028591	Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPVSHDDMTDLMRQWMEETI
Ga0247611_107843513	3300028591	Rumen	MVELTQDRKARNLWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0247608_100009382	3300028805	Rumen	MVELKRDRKTRRMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0247608_102323022	3300028805	Rumen	MVELKQDRKANRIWLITTTDKEGYHRQLPISHDDMTDLMRQWMEETI
Ga0247608_105049053	3300028805	Rumen	KTNHMWLITTTDSEGFHRQLPISHDDMTDLMRQWKEQTI
Ga0247608_105053883	3300028805	Rumen	MVELKQDRKARHMWLITTTDSEGYHRQLPISHDDMTDLMRQWMEATI
Ga0247608_106944682	3300028805	Rumen	MVELKQDRKTRHMWLITTTDSEGFHHQLPISQDDMTDLMRQWMEETI
Ga0247610_103854872	3300028833	Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQMPISHDDMTDLMRQWMEATI
Ga0247610_112113372	3300028833	Rumen	MVELKRDRKTRHMWLITTTDSEGYHRQLPISHDDMTDLMRQWMEATI
Ga0247610_118320003	3300028833	Rumen	KTRRMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0256407_100788563	3300028886	Rumen	MVTLTNDRKASHMWLITVTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0247609_113170562	3300028888	Rumen	MVELKQDRKARHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0247609_119358741	3300028888	Rumen	ERNGIQTTRRRMVELKQDRNARHMWLITTTDSEGSHRQLPISHDDMTDLMRQWMEETI
Ga0247609_120384972	3300028888	Rumen	MATYWSRMVTLTKDRKASHMWLITTTDSEGFHHQLSISRDDMTDLMRQWIEETI
Ga0326513_100470175	3300031760	Rumen	MVELKKDRKASRMWLITVTDSEGFHRQLAISYDDMTDLMRQWIEETI
Ga0326513_100864004	3300031760	Rumen	MVELTNDRKANRMWLITTTDSEGYHRQLPISHNDMIDLMRQWIEETI
Ga0326513_101188063	3300031760	Rumen	MVELKQDRKARNVWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326513_102496053	3300031760	Rumen	MVTLKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWIEATI
Ga0326513_103263753	3300031760	Rumen	MVELKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWIEATI
Ga0326513_104303272	3300031760	Rumen	MVELTRDRKAWCTWLITTTDSEGFHRQLPISYDDMTDLMRQWMEIGTI
Ga0326513_104397652	3300031760	Rumen	MVELKQDRKANRMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEKTI
Ga0326513_105183302	3300031760	Rumen	MVELTNDRKTRCMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0326513_106025662	3300031760	Rumen	MVELKQDRKASRMWLITTTDSEGFHRQLPISHDDMIDLMRQWMEETI
Ga0326513_106116092	3300031760	Rumen	MVTLKRDRKARNIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETT
Ga0326513_106385371	3300031760	Rumen	MVELKNDRKTRRMWLITVTDSEGFHRQLPISHDDMTE
Ga0326513_107071211	3300031760	Rumen	RRMVELKQDRKASRMWLITTTDSEGFHRQLPISYDEMTDLMRQWIEETI
Ga0326513_107168472	3300031760	Rumen	MVELKRDRKANRIWLITTTDSEGFHRQLPISHDDITDLMRQWMEETI
Ga0326513_107384442	3300031760	Rumen	MVELKRDRKARHMWLITTTDSEGFHRQLPISHDDMADLVRQWMEETI
Ga0326513_107564352	3300031760	Rumen	MVELKQDRKAHKVWLITTTDSEGFHRQLPISHDDMTDLMRQWIEATI
Ga0326513_109258161	3300031760	Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPISHDDMRELVKLWMKNRYD
Ga0326513_118014431	3300031760	Rumen	MVELTRDRKTRHMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEATI
Ga0326513_118494002	3300031760	Rumen	MVELTRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326514_100779323	3300031853	Rumen	MVELKKDRKASRIWLITTTDSEGYHRQLPISHDDMTDLMRQWIEATI
Ga0326514_100829843	3300031853	Rumen	MVELTRDRKAWCTWLITTTDSEGFHRQLPISYDDMTELMRQWMEIGTI
Ga0326514_100960853	3300031853	Rumen	MVTLTNDRKASRMWLITVTDSEGFHRQLPISHDDMTELMRQWMEETI
Ga0326514_101896432	3300031853	Rumen	MVELKRDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326514_101993183	3300031853	Rumen	MVELKQDRKARQMWLITTTDSEGFHRQLPISHDDMTDLMRQWIEETI
Ga0326514_103561542	3300031853	Rumen	MVELKNDRKTRRMWMITVTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0326514_104577313	3300031853	Rumen	MVELKQDRKASRMWLITTTDSEGYHRQLPISHDDMTDLMRQWIEETI
Ga0326514_105688392	3300031853	Rumen	MVELTRDRKTRHMWLITTTDSEGFHRQLSISHDDMTDLMRQWMEATI
Ga0326514_106050073	3300031853	Rumen	MVELKKDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWIDEVI
Ga0326514_107570372	3300031853	Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPISHDDMADLMRQWKEQTI
Ga0326514_108201232	3300031853	Rumen	MVTLTNDHKAHKVWIITVTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326514_109729991	3300031853	Rumen	MVTLKRDRKTRHMWLITTTDSEGFHRQLPISYDDMTDLMRQWM
Ga0326514_110077022	3300031853	Rumen	YGEGIGIQTTRRRMVELKQDRKANRMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEKTI
Ga0326514_110688102	3300031853	Rumen	MVELKKDRKASRMWLITVTDSEGFHRQLPISHDDMTDLMRQWIEETI
Ga0326514_111369631	3300031853	Rumen	MVTLTNDRKANHIWLITTTDGEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326514_112929362	3300031853	Rumen	MVELKRDRKARQMWLITTTDSEGFHRQLPISHDDMTDLMRQW
Ga0326514_115160431	3300031853	Rumen	VELTRDRKTRHMWLITTTDSEGFHRQLPITFDDMRELVRLWMEETI
Ga0326514_115732872	3300031853	Rumen	MVELKQDRKASNVWLITTTDSEGFHRQLPISYDEMTELMRQWMEATI
Ga0326511_101008032	3300031867	Rumen	MVELTRDRKANRMWLITTTDSEGFHRQLPISHDDMADLVRQWMEETI
Ga0326511_101404403	3300031867	Rumen	MVELKRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEQTI
Ga0326511_101684243	3300031867	Rumen	MVTLTNDRKASRMWLITVADSEGFHRQLPISHDDMTDLMRQWMMETI
Ga0326511_103062812	3300031867	Rumen	MVELKRDRKANHMWLITTTDSEGFHRQLPISHDDMIDLMRQWKEETI
Ga0326511_104911423	3300031867	Rumen	MVILKRDRKANRMWLITVTDSEGYHRQLPISHDDMTDLMRQWIEETI
Ga0326511_109964661	3300031867	Rumen	LKRDRKANNVWLITVTNSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0326511_110654472	3300031867	Rumen	MVTLTNDRKANRMWLITTTDSEGYHRQLPISHDDMTDLMRQWIEETI
Ga0326511_110657312	3300031867	Rumen	MVELKQDRKTRHMWLITTTDSEGFHRQLSISHDDMTDLMRQWMEATI
Ga0326511_111266313	3300031867	Rumen	MVILKQDRKANRMWLITVTDSEGYHRQLPISHDDMTDLMRQWIEETI
Ga0326511_114544712	3300031867	Rumen	MIELKQDRKGRHMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEETI
Ga0326511_115012022	3300031867	Rumen	MVELKHNRKPRPMWLITVTDSEGFHRQLPISHDDMTELMRQWIEETI
Ga0310694_103206583	3300031992	Rumen	MVELKQDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0310694_105416743	3300031992	Rumen	MVKLKRDRKTRRMWLITTTDSEGFHRQLPISHDDMRELVRLWMEETI
Ga0310694_115001571	3300031992	Rumen	MVELKRDRKTRHMWLITTTDSEGYHRQLPISHDDMTDLMRQWIEET
Ga0310691_101398813	3300031994	Rumen	MVELKRDRKTRHMWLITTTDSEGFHHQLPISQDDMTDLMRQWMEETI
Ga0310691_102157813	3300031994	Rumen	MVELKRDRKARHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0310691_103110954	3300031994	Rumen	MVELKRDRKTNHMWLITTTDSEGFHRQLPISHDDMTDLMRQWKEQTI
Ga0310691_109038111	3300031994	Rumen	MVELKRDRKTNHMWLITTTDSEGYHRQLPISHDDMRELVKLWMKNRY
Ga0310691_119677582	3300031994	Rumen	MVELKQDRKASRMWLITTTDSEGFHRQLPISHDDMTDLMRQWM
Ga0310697_104118222	3300032030	Rumen	MVELKQDRKTRNLWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0310697_117735442	3300032030	Rumen	TRMVELKRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326512_100947743	3300032038	Rumen	MVELTRDRKAWCTWLITTTDSEGFHRQLPISYDDMTDLMRQWMEKGTI
Ga0326512_101399843	3300032038	Rumen	MVELKNDRKTRRMWMITVTDSEGFHRQLPISHDDMTELMRQWIEETI
Ga0326512_101565204	3300032038	Rumen	RNGIQTLWTRMVELTRDRKTRHMWLITTTDSEGFHRQLPISHDDMADLMRQWMEATI
Ga0326512_101743702	3300032038	Rumen	MVELKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEATI
Ga0326512_102261323	3300032038	Rumen	MVELKKDRKANHMWLITTTDSEGFHRQLPISHDDMRELVKLWMKNRYD
Ga0326512_102432603	3300032038	Rumen	MVELKQDRKARQMWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETT
Ga0326512_104377232	3300032038	Rumen	MATHWSRMVTLTNDHKDRHMWLITTTDSEGYHRQLSISHDDMTDLMRQWIEETI
Ga0326512_104600472	3300032038	Rumen	SRMVTLKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWIEATI
Ga0326512_105340233	3300032038	Rumen	ASQGGRSRRHGMVELKRDRKANHMWLITTTDSEGFHRQLPISHDDMRELVKLWMKNRYD
Ga0326512_105573042	3300032038	Rumen	MVTLKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWIEETI
Ga0326512_106130522	3300032038	Rumen	MVELKQDRKANRMWLITTTDSEGFHRQLPISYDDMTDLMRQWMEATI
Ga0326512_106351583	3300032038	Rumen	RRMVILKQDRKANRMWLITVTDSEGYHRQLPISHDDMTDLMRQWIEETI
Ga0326512_107704942	3300032038	Rumen	MMEMVELKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWIEETI
Ga0326512_108248392	3300032038	Rumen	MVTLKRDRKSSHMWLITTTDSEGYHRQLPISHDDMTDLMRQWIEETI
Ga0326512_108842981	3300032038	Rumen	MVTLKQDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326512_109389932	3300032038	Rumen	MVELKQDRKTRHMWLITTTDRDGYHRQLPISHDDMTDLMRQWMEATI
Ga0326512_109689072	3300032038	Rumen	DRKTRHMWLITTTDSEGFHRQLSISHDDMTDLMRQWMEATI
Ga0326512_110277121	3300032038	Rumen	MVELKQDRKTRHMWLITTTDSEGFHRQLSISHDDMTDLMRQ
Ga0326512_111269472	3300032038	Rumen	MVELKQDRKAHKVWLITTTDSEGFHRQLPISHDDMTDLMRQWMEETI
Ga0326512_111567972	3300032038	Rumen	MVELTRDRKANRIWLITTTDSEGFHRQLPISHDDMTDLMRQWKEATI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences