Metagenome / Metatranscriptome Family F075060

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075060
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	78 residues
Representative Sequence	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Number of Associated Samples	104
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.66 %
% of genes near scaffold ends (potentially truncated)	34.45 %
% of genes from short scaffolds (< 2000 bps)	78.15 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.118 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.605 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.782 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 12.84% Coil/Unstructured: 87.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF04384	Fe-S_assembly	43.70
PF07364	DUF1485	31.93
PF00111	Fer2	7.56
PF00012	HSP70	6.72
PF00069	Pkinase	2.52
PF01521	Fe-S_biosyn	0.84
PF08352	oligo_HPY	0.84
PF02082	Rrf2	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG2975	Fe-S-cluster formation regulator IscX/YfhJ	Posttranslational modification, protein turnover, chaperones [O]	43.70
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	31.93
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	10.08
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	6.72
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.84
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.84
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.84
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.84
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.84
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.84
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.84
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.84
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.12 %
Unclassified	root	N/A	3.36 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.52 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.18 %
Unclassified	root	N/A	3.36 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2.52 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	37.82 %
Unclassified	root	N/A	3.36 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	2.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.36 %
Unclassified	root	N/A	3.36 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	2.52 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Mandibulata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Pancrustacea	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Hexapoda	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Insecta	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Dicondylia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Pterygota	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Palaeoptera	infraclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Ephemeroptera	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Furcatergalia	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Scapphodonta	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Ephemeridae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Ephemera	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	3.36 %
Ephemera danica	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	2.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.68 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	0.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101550627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1878	Open in IMG/M
3300004480\|Ga0062592_100394365	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300004808\|Ga0062381_10442371	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005093\|Ga0062594_100351606	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300005093\|Ga0062594_100515730	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300005289\|Ga0065704_10765872	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005330\|Ga0070690_100346623	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300005334\|Ga0068869_101855763	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005338\|Ga0068868_101601021	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005338\|Ga0068868_102196654	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005341\|Ga0070691_10264147	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005343\|Ga0070687_100053511	All Organisms → cellular organisms → Bacteria	2099	Open in IMG/M
3300005364\|Ga0070673_101989002	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005441\|Ga0070700_100882979	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300005456\|Ga0070678_100324300	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300005457\|Ga0070662_101118929	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300005543\|Ga0070672_100467010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1088	Open in IMG/M
3300005544\|Ga0070686_100957743	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005545\|Ga0070695_101020545	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300005549\|Ga0070704_100500892	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300005577\|Ga0068857_102134630	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005578\|Ga0068854_100653240	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300005615\|Ga0070702_100183938	All Organisms → cellular organisms → Bacteria → Proteobacteria	1370	Open in IMG/M
3300005617\|Ga0068859_100653906	Not Available	1143	Open in IMG/M
3300005617\|Ga0068859_101151732	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300005713\|Ga0066905_100033557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2947	Open in IMG/M
3300005719\|Ga0068861_100657636	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005719\|Ga0068861_101824506	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005840\|Ga0068870_10077337	All Organisms → cellular organisms → Bacteria → Proteobacteria	1830	Open in IMG/M
3300005981\|Ga0081538_10160025	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300006196\|Ga0075422_10059821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1398	Open in IMG/M
3300006844\|Ga0075428_100251107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1906	Open in IMG/M
3300006844\|Ga0075428_100658966	All Organisms → cellular organisms → Bacteria → Proteobacteria	1116	Open in IMG/M
3300006844\|Ga0075428_100917526	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300006845\|Ga0075421_101188262	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300006876\|Ga0079217_10119528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1221	Open in IMG/M
3300006918\|Ga0079216_10948066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	656	Open in IMG/M
3300006969\|Ga0075419_10374554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	972	Open in IMG/M
3300007004\|Ga0079218_10773593	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300007004\|Ga0079218_10825349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	896	Open in IMG/M
3300009094\|Ga0111539_10168418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2560	Open in IMG/M
3300009100\|Ga0075418_13030440	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300009147\|Ga0114129_10495723	All Organisms → cellular organisms → Bacteria → Proteobacteria	1596	Open in IMG/M
3300009156\|Ga0111538_11191742	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300009176\|Ga0105242_11772297	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300009609\|Ga0105347_1003207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6207	Open in IMG/M
3300009610\|Ga0105340_1002297	All Organisms → cellular organisms → Bacteria → Proteobacteria	8258	Open in IMG/M
3300009678\|Ga0105252_10029198	All Organisms → cellular organisms → Bacteria → Proteobacteria	2010	Open in IMG/M
3300010045\|Ga0126311_11344698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	595	Open in IMG/M
3300010371\|Ga0134125_11175889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	838	Open in IMG/M
3300010399\|Ga0134127_10362709	All Organisms → cellular organisms → Bacteria → Proteobacteria	1420	Open in IMG/M
3300011403\|Ga0137313_1004209	All Organisms → cellular organisms → Bacteria → Proteobacteria	2668	Open in IMG/M
3300011420\|Ga0137314_1007805	All Organisms → cellular organisms → Bacteria → Proteobacteria	2913	Open in IMG/M
3300011440\|Ga0137433_1027825	All Organisms → cellular organisms → Bacteria → Proteobacteria	1647	Open in IMG/M
3300011445\|Ga0137427_10442482	Not Available	537	Open in IMG/M
3300012015\|Ga0120187_1012720	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300012140\|Ga0137351_1064162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	527	Open in IMG/M
3300012159\|Ga0137344_1016793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1152	Open in IMG/M
3300012469\|Ga0150984_115409844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	578	Open in IMG/M
3300012910\|Ga0157308_10320028	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300012912\|Ga0157306_10100561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	837	Open in IMG/M
3300012955\|Ga0164298_11223957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	570	Open in IMG/M
3300013297\|Ga0157378_11778107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	664	Open in IMG/M
3300013306\|Ga0163162_10270175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1832	Open in IMG/M
3300015201\|Ga0173478_10105404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1047	Open in IMG/M
3300015371\|Ga0132258_10989087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2126	Open in IMG/M
3300015372\|Ga0132256_100679066	All Organisms → cellular organisms → Bacteria → Proteobacteria	1145	Open in IMG/M
3300018056\|Ga0184623_10164512	Not Available	1024	Open in IMG/M
3300018084\|Ga0184629_10649489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	535	Open in IMG/M
3300018422\|Ga0190265_10048879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3671	Open in IMG/M
3300018429\|Ga0190272_10008019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5091	Open in IMG/M
3300018465\|Ga0190269_10320699	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300018466\|Ga0190268_11825964	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	549	Open in IMG/M
3300018469\|Ga0190270_11370719	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	752	Open in IMG/M
3300018469\|Ga0190270_12688041	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300019228\|Ga0180119_1272709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	738	Open in IMG/M
3300019361\|Ga0173482_10428580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	623	Open in IMG/M
3300021066\|Ga0196980_1021645	All Organisms → cellular organisms → Bacteria → Proteobacteria	1004	Open in IMG/M
3300025899\|Ga0207642_10124344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1336	Open in IMG/M
3300025901\|Ga0207688_10363426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	893	Open in IMG/M
3300025907\|Ga0207645_10036261	All Organisms → cellular organisms → Bacteria → Proteobacteria	3166	Open in IMG/M
3300025907\|Ga0207645_10053737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2574	Open in IMG/M
3300025918\|Ga0207662_10043801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2641	Open in IMG/M
3300025918\|Ga0207662_10791135	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300025925\|Ga0207650_10776621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	811	Open in IMG/M
3300025940\|Ga0207691_10119742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2334	Open in IMG/M
3300025942\|Ga0207689_10902159	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300025960\|Ga0207651_10977278	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300026023\|Ga0207677_11575213	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300026075\|Ga0207708_10836672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	794	Open in IMG/M
3300026118\|Ga0207675_101041719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	837	Open in IMG/M
3300027513\|Ga0208685_1000264	All Organisms → cellular organisms → Bacteria → Proteobacteria	19330	Open in IMG/M
3300027533\|Ga0208185_1000887	All Organisms → cellular organisms → Bacteria → Proteobacteria	9990	Open in IMG/M
3300027573\|Ga0208454_1079906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	762	Open in IMG/M
3300027880\|Ga0209481_10245234	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300027907\|Ga0207428_10019374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5803	Open in IMG/M
3300027907\|Ga0207428_10286072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300027909\|Ga0209382_10042410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5450	Open in IMG/M
3300027909\|Ga0209382_10246855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2028	Open in IMG/M
3300028590\|Ga0247823_10568821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	854	Open in IMG/M
3300028608\|Ga0247819_10926040	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	547	Open in IMG/M
3300028812\|Ga0247825_10056132	All Organisms → cellular organisms → Bacteria → Proteobacteria	2620	Open in IMG/M
3300028812\|Ga0247825_10826910	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300028880\|Ga0307300_10165986	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300030998\|Ga0073996_12313035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1770	Open in IMG/M
3300031226\|Ga0307497_10000410	All Organisms → cellular organisms → Bacteria → Proteobacteria	10072	Open in IMG/M
3300031538\|Ga0310888_10019091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2832	Open in IMG/M
3300031740\|Ga0307468_101440022	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031908\|Ga0310900_10032942	All Organisms → cellular organisms → Bacteria → Proteobacteria	2889	Open in IMG/M
3300031913\|Ga0310891_10018329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1718	Open in IMG/M
3300031943\|Ga0310885_10007538	All Organisms → cellular organisms → Bacteria → Proteobacteria	3594	Open in IMG/M
3300031944\|Ga0310884_10376124	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300031944\|Ga0310884_10671881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	624	Open in IMG/M
3300032013\|Ga0310906_10907723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	628	Open in IMG/M
3300032122\|Ga0310895_10426623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	654	Open in IMG/M
3300033550\|Ga0247829_10322869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1257	Open in IMG/M
3300033550\|Ga0247829_10416422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1106	Open in IMG/M
3300034164\|Ga0364940_0144183	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.50%
Host-Associated	Host-Associated	39.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.06%
Plants	Host-Associated → Plants	39.50%
Aquatic	Environmental → Aquatic	13.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.97%
Sediment	Environmental → Aquatic → Sediment	11.76%
Freshwater	Environmental → Aquatic → Freshwater	1.68%
Floodplain	Environmental → Terrestrial → Floodplain	0.84%
Roots	Host-Associated → Plants → Roots	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	10.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.84%
Sand	Environmental → Terrestrial → Soil → Sand	0.84%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.84%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.84%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.84%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	10.08%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.20%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.20%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.20%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.84%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.84%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.84%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.84%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012015	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1	Environmental	Open in IMG/M
3300012140	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT690_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021066	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_10-13C	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1015506272	3300000956	Soil	MKRTIALLFVSAVVVTGCSRPVVKETVVERPVVVEKAPAAATGATAPACTYASQSYSHGSVSCQDRSQFRCDNGIWSRTANAC*
Ga0062592_1003943651	3300004480	Soil	MKRTIAVIFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCD
Ga0062381_104423712	3300004808	Wetland Sediment	MKRTIVVMFISAVAVTGCSRPVVKETVVERPVVVEKAAATGGSAPACTFASQSYSHGSVSCQDRNQYRCDNGVWNRTYSA
Ga0062594_1003516061	3300005093	Soil	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQ
Ga0062594_1005157302	3300005093	Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQYRCDNG
Ga0065704_107658722	3300005289	Switchgrass Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC*
Ga0070690_1003466232	3300005330	Switchgrass Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0068869_1018557632	3300005334	Miscanthus Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSASCQDRNQFRCDNGIWNRTANAC*
Ga0068868_1016010211	3300005338	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPSCTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSACP*
Ga0068868_1021966542	3300005338	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRN
Ga0070691_102641473	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC*
Ga0070687_1000535113	3300005343	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPSCTYASQSYSHGSVSCQDRNQYRCDNGVWNR
Ga0070673_1019890022	3300005364	Switchgrass Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0070700_1008829792	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0070678_1003243001	3300005456	Miscanthus Rhizosphere	VMFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0070662_1011189293	3300005457	Corn Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSACP*
Ga0070672_1004670101	3300005543	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0070686_1009577431	3300005544	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNR
Ga0070695_1010205451	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VTGCSRPVVKETVVEKPVVVDRAATGASAPSCTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0070704_1005008923	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTIAVIFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0068857_1021346302	3300005577	Corn Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0068854_1006532402	3300005578	Corn Rhizosphere	MKRTLAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0070702_1001839381	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAATGASAPACTYASQSYSHGSVSCQDRNQY
Ga0068859_1006539061	3300005617	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRN
Ga0068859_1011517321	3300005617	Switchgrass Rhizosphere	IAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0066905_1000335575	3300005713	Tropical Forest Soil	MKLSIVLMLFAATLLAGCSRPVVKETVVEKQPVIVEKQQPVVVDRPAAVGTTAPPSCTYASQAYSHGSVSCQDRTQYRCDNGNWTRTLTAC*
Ga0068861_1006576361	3300005719	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0068861_1018245062	3300005719	Switchgrass Rhizosphere	MKRTIAVIFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0068870_100773373	3300005840	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0081538_101600254	3300005981	Tabebuia Heterophylla Rhizosphere	KEKETIVERPAPATTVVERPAPAPAAAGATVASCTYASQSYSHGGVSCQDRTQYRCDNCIWNRTLNPC*
Ga0075422_100598211	3300006196	Populus Rhizosphere	MKRTLAVMFISAVAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC*
Ga0075428_1002511074	3300006844	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAAGASAPACTYASQSYSHGSVSCQDRSQFRCDNGIWNRTANAC*
Ga0075428_1006589662	3300006844	Populus Rhizosphere	MKVSFALMSIAAVLLAGCSKPVVKETVVERPVVVERPAAAAAGSTIGTCTYASQAYSHGSIACQDRVQYRCDNGVWNRTLNAC*
Ga0075428_1009175262	3300006844	Populus Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQYRC
Ga0075421_1011882621	3300006845	Populus Rhizosphere	MKRTIAVMFIAAIAVTGCSRPVHKETVVERPVVVEKAATGSSAPSCTYASQSYSHGSVSCQDRSQFRCDNGIWNRTANAC*
Ga0079217_101195282	3300006876	Agricultural Soil	MKLPIALMLLSAALLAGCSRPVVRETVIERPVERPVTTVVQPAAGATSPPSCVYASQAYSHGSVSCQDRTQYRCDNGVWNRTFSAC*
Ga0079216_109480662	3300006918	Agricultural Soil	MKLPIALMLLSAALLAGCSRPVVRETVIERPVERPVTTVVQPAAGATSPPNCVYASQAYSHGSVSCQDRTQYRCDNGVWNRTFSAC*
Ga0075419_103745543	3300006969	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVHKETVVERPVVVEKAATGSSAPSCTYASQSYSHGSVSCQDRSQFRCDNGIWNRTANAC*
Ga0079218_107735931	3300007004	Agricultural Soil	MKLPIALMLLSAALLAGCSRPVVRETVIERPVERPVTTVVQPAAGATSPPSCVYASQAYSHGSVSCQDRTQYRCDNGVWNRT
Ga0079218_108253492	3300007004	Agricultural Soil	MKLSLALMFISALLLASCSRPVVRETVVERPVVVDRPAAVGATSGSCVYASQAYSHGALTCQDRTEFKCDNGKWRRTFTAC*
Ga0111539_101684184	3300009094	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPAVKETVVEKPVVVDRAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0075418_130304402	3300009100	Populus Rhizosphere	LDVLPIQEVAMKVSFALMSIAAVLLAGCSKPVVKETVVERPVVVERPAAAAAGSTIGTCTYASQAYSHGSIACQDRVQYRCDNGVWNRTLNAC*
Ga0114129_104957232	3300009147	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAAGASAPACTYASQSYSHGSVSCQDRRQFRCDNGIWNRTANAC*
Ga0111538_111917423	3300009156	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0105242_117722972	3300009176	Miscanthus Rhizosphere	MKRTLAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWN
Ga0105347_10032078	3300009609	Soil	MKRTIALMFIPALLLAGCARPVKETVIERPVVVAPAAATGASAPNCTYASQAYGHGSVSCQDRTQFRCDNGIWNRTFTAC*
Ga0105340_10022976	3300009610	Soil	MKRSIALMFIPALLLAGCSRPVVKETIVERPVVVERPAATGASAPNCTYASQAYGHGSVSCQDRTQYRCDNGIWNRTFTAC*
Ga0105252_100291983	3300009678	Soil	MKRSIALMFIPALLLAGCSRPVKETVIERPVVVAPAPAAGASAPSCTYASQAYSHGGVSCQDRTQYRCDNGIWNRTFTAC*
Ga0126311_113446982	3300010045	Serpentine Soil	MFISAIAVTGCSRPVVKETVVERPVVVEKSVAASGATAPACTYASQAYSHGAISCQDRNQYRCDNGVWNRTYSAC*
Ga0134125_111758893	3300010371	Terrestrial Soil	MTRTIGVMFILAVAVAGCSRPVVRETVVERPVVVDRAAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0134127_103627092	3300010399	Terrestrial Soil	MKRTIAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0137313_10042094	3300011403	Soil	MKRTIALMFIPALLLAGCSRPVVKETVVERPVVVERAAATGASAPNCTYASQAYSHGSMSCQDRTQFRCDNGIWNRTFTAC*
Ga0137314_10078054	3300011420	Soil	MKRTIALMFIPALLLAGCSRPVVKETVVERPVVVERAAATGASAPSCTFASQAYSHGSVSCQDRTQFRCDNGIWNRTFTAC*
Ga0137433_10278252	3300011440	Soil	MKRTIALMFIPALLLAGCARPVKETVIERPVVVAPAAATGASAPNCTYASQAYGHGSVSCQDRTQFRCDNGIWNRTLTAC*
Ga0137427_104424822	3300011445	Soil	MKLSFALMLIPALLLAGCSRPLKETVVERPVVIERPAAAGATAPNCTYASQAYSQGSISCQDRNQYRCESGVWNRTLNAC*
Ga0120187_10127201	3300012015	Terrestrial	MKKLPIALMLLSAALLAGCSRPIVKEKETIVERPAPVVKETVIERPAAAGATIASCTYAGQPYSHGAVSCQQDRYQYRCDNGVWNRTITPC*
Ga0137351_10641622	3300012140	Soil	FALMLIPALLLAGCSRPLKETVVERPVVIERPAAAGATAPNCTYASQAYSHGGVSCQDRTQFRCDNGIWNRTFTAC*
Ga0137344_10167932	3300012159	Soil	MKLSFAFMCVAAAMLAGCSRPVVRETVVERPVVVERAAAGATTPSCTYASQAYSHGSVSCQDRTQFRCDNGIWNRTMTAC*
Ga0150984_1154098441	3300012469	Avena Fatua Rhizosphere	MTRTIGMMFILAVAVAGCSRPVVRETVVERPVVVDRAAASGASAPSCTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0157308_103200281	3300012910	Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGV
Ga0157306_101005613	3300012912	Soil	VMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0164298_112239573	3300012955	Soil	IAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0157378_117781073	3300013297	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQDYSHGSVSCQDRNQFRCDNGIWNRTANAC*
Ga0163162_102701752	3300013306	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSPGSVSCQDRNQFRCDNGIWNRTANAC*
Ga0173478_101054044	3300015201	Soil	IAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC*
Ga0132258_109890874	3300015371	Arabidopsis Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0132256_1006790663	3300015372	Arabidopsis Rhizosphere	MTRTIGVMFILAVAVAGCSRPVGRETVVERPVVVDRAAASGASARSCTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYNACP*
Ga0184623_101645124	3300018056	Groundwater Sediment	MKLSFAFMCVAAALLAGCSRPVVRETVVERPVVVDRAAAGATTPSCTYASQAYSHGSVSCQDRTQFRCDNGIWNRTMTAC
Ga0184629_106494891	3300018084	Groundwater Sediment	ALLAGCSRPVVRETVVERPVVIDRAAAGATTPSCTYASQAYSQGSVSCQDRTQFRCDNGIWNRTMTAC
Ga0190265_100488792	3300018422	Soil	MKKLSIALMLLSAALLAGCSRPVVKEKETIIERPAPAPTVIERPAAAGATVASCTYASQAYSHGSVSCQDRTQYRCDNGIWNRTLNAC
Ga0190272_100080196	3300018429	Soil	MKLSFAFMCVTAVLLAGCSRPVVRETVVERPVVVERAAPAAAGATTPSCAYASQAYSHGAVSCQDRTQYRCDNGIWNRTFNAC
Ga0190269_103206992	3300018465	Soil	MKRTIALMFVSAVIVTGCSRPVVKETVVERPVVVDRAAASGASAMSCTYASQAYSHGAVSCQDRYQYRCENGIWNRTPNAC
Ga0190268_118259642	3300018466	Soil	MKLSLLSLMLIPALLLAGCSRPVKETVVERPVIVTPAPAAAAGTTAAPNCVYASQGYSHGSVSCQDRTQYRCENGIWNRTFTAC
Ga0190270_113707192	3300018469	Soil	MKKLSIALMLLSAALLAGCSRPVVKETVVEKQPVVIERPAATGATVASCTYASQAYSHGSVSCQDRTQYRCDNGIWNRTLNAC
Ga0190270_126880411	3300018469	Soil	MKLSIALILTSAVLVAGCSRPVKETIVERPVPVVVQQPAPAAAGATAPNCVYASQGYSHGSVSCQDRTQYRCENGIWNRTFTAC
Ga0180119_12727093	3300019228	Groundwater Sediment	MKRTIALMFIPALLLAGCSRPVKETVIERPVVVAPAPAAGASAPSCTYASQAYSHGGVSCQDRTQYRCDNGIWNRTFTAC
Ga0173482_104285802	3300019361	Soil	MKRTIAVIFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0196980_10216452	3300021066	Soil	MKLSFALMSIAALLVAGCSRPVVKETVVERPVVVERPAAAAAGSTVTGCIYASQAYSHGSVSCQDRSQFRCENGVWQRTFTAC
Ga0207642_101243444	3300025899	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPSCTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSACP
Ga0207688_103634262	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0207645_100362614	3300025907	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0207645_100537375	3300025907	Miscanthus Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC
Ga0207662_100438013	3300025918	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPSCTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0207662_107911352	3300025918	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0207650_107766213	3300025925	Switchgrass Rhizosphere	KRTIAVIFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0207691_101197424	3300025940	Miscanthus Rhizosphere	MKRTIAVIFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0207689_109021592	3300025942	Miscanthus Rhizosphere	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSASCQDRNQFRCDNGIWNRTANAC
Ga0207651_109772781	3300025960	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRN
Ga0207677_115752132	3300026023	Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQ
Ga0207708_108366722	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0207675_1010417192	3300026118	Switchgrass Rhizosphere	MKRTIAVMFISAIAVTGCSRPAVKETVVERPVVVDRAAASGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0208685_100026415	3300027513	Soil	MKRTIALMFIPALLLAGCARPVKETVIERPVVVAPAAATGASAPNCTYASQAYGHGSVSCQDRTQFRCDNGIWNRTFTAC
Ga0208185_10008879	3300027533	Soil	MKRSIALMFIPALLLAGCSRPVVKETIVERPVVVERPAATGASAPNCTYASQAYGHGSVSCQDRTQYRCDNGIWNRTFTAC
Ga0208454_10799062	3300027573	Soil	MKRSIALMFIPALLLAGCSRPVKETVIERPVVVAPAPAAGASAPSCTYASQAYSHGGVSCQDRTQYRCDNGIWNRTFTAC
Ga0209481_102452342	3300027880	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAAGASAPACTYASQSYSHGSVSCQDRSQFRCDNGIWN
Ga0209486_104802173	3300027886	Agricultural Soil	MKLPIALMLLSAALLAGCSRPVVRETVIERPVERPVTTVVQPAAGATSPPSCVYASQAYSHGSVSCQDRTQYRCDNGVWNRTFSAC
Ga0207428_100193747	3300027907	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPAVKETVVEKPVVVDRAATGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0207428_102860724	3300027907	Populus Rhizosphere	VTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC
Ga0209382_100424104	3300027909	Populus Rhizosphere	MKVSFALMSIAAVLLAGCSKPVVKETVVERPVVVERPAAAAAGSTIGTCTYASQAYSHGSIACQDRVQYRCDNGVWNRTLNAC
Ga0209382_102468554	3300027909	Populus Rhizosphere	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAAGASAPACTYASQSYSHGSVSCQDRSQFRCDNGIWNRTANAC
Ga0247823_105688212	3300028590	Soil	MKRTIAVMFISAIAVTGCSRPAVKETVVERPIVVEKAATGSSAPSCTYASQSYSHGSVSCQDRSQYRCENGIWNRTANAC
Ga0247819_109260403	3300028608	Soil	VMFIAAVAVTGCSRPVVKETVVERPVVVDKAAAGASAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0247825_100561321	3300028812	Soil	MTRTIAVIFISALAVTGCSRPVVKETVVEKPVVVDRAATGASAPSCTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC
Ga0247825_108269101	3300028812	Soil	MKRTIAVMFIAAVAVTGCSRPVVKETVVERPVVVDKAAAGASAPACTYASQSYSHGSVSCQDRSQ
Ga0307300_101659861	3300028880	Soil	MKRTIAVMFIAAIAVTGCSRPVVKETVVERPVVVDRAAATGASAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYS
Ga0073996_123130351	3300030998	Soil	LAGCARPVVRETVVERPVIVDRPAAAGATLPSCTYASQAYSQGAVSCQDRTQFLCSGGNWERTLNAC
Ga0307497_100004108	3300031226	Soil	MTRTIGVMFILAVAVAGCSRPVVRETVVERPVVVDRAAASGASAPSCTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYSACP
Ga0310888_100190914	3300031538	Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0307468_1014400221	3300031740	Hardwood Forest Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQTYSHGSVSCQDRNQYRCDNGIWGRTAN
Ga0310900_100329424	3300031908	Soil	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTA
Ga0310891_100183292	3300031913	Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYNACP
Ga0310885_100075381	3300031943	Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQSYSHGSVSCQDRNQY
Ga0310884_103761241	3300031944	Soil	MKRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRN
Ga0310884_106718813	3300031944	Soil	TGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC
Ga0310906_109077231	3300032013	Soil	KRTLAVMFISAIAVTGCSRPVVKETVVEKPVVVDRAATGGSAPACTYASQSYSHGSVSCQDRNQFRCDNGIWNRTANAC
Ga0310895_104266231	3300032122	Soil	IAVTGCSRPVVKETVVERPVVVDKAAATGSSAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0247829_103228691	3300033550	Soil	ISAIAVTGCSRPAVKETVVERPIVVEKAATGSSAPSCTYASQSYSHGSVSCQDRSQYRCENGIWNRTANAC
Ga0247829_104164223	3300033550	Soil	MKRTIAVMFISAIAVTGCSRPVVKETVVERPVVVDKAAATGGSAPACTYASQAYSHGSVSCQDRNQYRCDNGVWNRTYSAC
Ga0364940_0144183_433_675	3300034164	Sediment	MKLSFAFMCVAAALLAGCSRPMVRETVVERPVVVDRAAAGATTPSCTYASQAYSHGSVSCQDRTQFRCDNGIWNRTMTAC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075060

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences