Basic Information | |
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Family ID | F075141 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 50 residues |
Representative Sequence | MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP |
Number of Associated Samples | 86 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 76.92 % |
% of genes near scaffold ends (potentially truncated) | 36.13 % |
% of genes from short scaffolds (< 2000 bps) | 85.71 % |
Associated GOLD sequencing projects | 82 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.32 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (56.303 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.454 % of family members) |
Environment Ontology (ENVO) | Unclassified (39.496 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (60.504 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 20.78% β-sheet: 0.00% Coil/Unstructured: 79.22% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Tropical Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Exposed Rock Avena Fatua Rhizosphere Populus Rhizosphere Avena Fatua Rhizosphere Attine Ant Fungus Gardens |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066395_107496051 | 3300004633 | Tropical Forest Soil | MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIGRINP* |
Ga0066690_107792812 | 3300005177 | Soil | MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDI |
Ga0066688_108046672 | 3300005178 | Soil | MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGACSGRT* |
Ga0066671_104178042 | 3300005184 | Soil | MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0066388_1028964302 | 3300005332 | Tropical Forest Soil | MRNLALITLWLAMLLAGCGGSLREDASAGPNPGGGFYGAPNIKIGRINP* |
Ga0066388_1042569272 | 3300005332 | Tropical Forest Soil | MAKLGLAMFLLAVLLAACGGSLRGNASAGPNPGGGFYGAPNIDVGRINP* |
Ga0066388_1078588991 | 3300005332 | Tropical Forest Soil | MHKIGAVTMLLALLLAGCGGALRGDASSGPNPGGGFYGAPNINIGRINP* |
Ga0070709_108484731 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | LMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP* |
Ga0070714_1002667262 | 3300005435 | Agricultural Soil | MNKLALAVICFAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070714_1008582762 | 3300005435 | Agricultural Soil | KVALVMIWLAVLLAACGASLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070713_1006594751 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MNKLALAVICFAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDIG |
Ga0070713_1008622991 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | SLAVRGGPMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070713_1024206271 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | RVGSRTAGELMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP* |
Ga0070711_1001581403 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP* |
Ga0070706_1006578802 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070698_1000545934 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070697_1004165001 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | RISLAVRGGPMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070696_1008101791 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | VSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAPNINIGRINP* |
Ga0066670_107481941 | 3300005560 | Soil | MNKIGLAVLWLAMLLVGCGGSLRGEAKAGPNPGGGFYGGPNINVGRINP* |
Ga0066705_109366002 | 3300005569 | Soil | MKKLGLAIIASMMLLAGCGGSFKGDANAAPNPGGGFYGAPNSDIGRINP* |
Ga0066694_100500102 | 3300005574 | Soil | MNKVALVMIWLAVLLVGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0066702_104772982 | 3300005575 | Soil | MKKLGLAIIASMMLLAGCGGSFKGDANAAPNPGGGFYGAPNSDIGRINLNPAVG* |
Ga0066708_107975532 | 3300005576 | Soil | MAKLGLPMILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNI |
Ga0070763_106582031 | 3300005610 | Soil | MARLGPAMILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP* |
Ga0066903_1001565162 | 3300005764 | Tropical Forest Soil | MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0066903_1005122345 | 3300005764 | Tropical Forest Soil | MHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNINIGRINP* |
Ga0066903_1023216581 | 3300005764 | Tropical Forest Soil | MRNLALITLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIG |
Ga0066903_1024287303 | 3300005764 | Tropical Forest Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP* |
Ga0066903_1033172471 | 3300005764 | Tropical Forest Soil | MAKLGLAMILLAILLAACGGSLRGNASAGPNPGGGFYGAPNIDIGRINPYNAGP* |
Ga0066903_1036583762 | 3300005764 | Tropical Forest Soil | MRKLTLPTLWFALLAGCSGSFRGDSSVGPNPGGGFYGAPNINVGHINP* |
Ga0066903_1078374301 | 3300005764 | Tropical Forest Soil | MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINVGRINP* |
Ga0066903_1086359081 | 3300005764 | Tropical Forest Soil | MRRLVLATLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIG |
Ga0066652_1019225312 | 3300006046 | Soil | MNKFALATLWLALLLSGCGGSLHGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0070765_1001602982 | 3300006176 | Soil | MARLGPATILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP* |
Ga0075425_1020971962 | 3300006854 | Populus Rhizosphere | LREAMVSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAPNINIGRINP* |
Ga0075426_110365151 | 3300006903 | Populus Rhizosphere | VSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAP |
Ga0126373_105562603 | 3300010048 | Tropical Forest Soil | MKKLALATLWLVLLAGCGGSFRGDADAGPNPGGGFYGAPNINVGRVNP* |
Ga0126373_118199491 | 3300010048 | Tropical Forest Soil | MEARMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNINIGRINP* |
Ga0126373_118520482 | 3300010048 | Tropical Forest Soil | MEARMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0126372_121116601 | 3300010360 | Tropical Forest Soil | MNKFRLAMLCFTALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0126378_118836151 | 3300010361 | Tropical Forest Soil | MNKFRLAMLCFMALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINPQ* |
Ga0126378_121939991 | 3300010361 | Tropical Forest Soil | MSKLVLVLIGLAMLLAGCGGLVRGDASAGPNPGGGFYEAPNIDIGRIDP* |
Ga0126378_127286572 | 3300010361 | Tropical Forest Soil | LRLPVICSMMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0134128_119706532 | 3300010373 | Terrestrial Soil | ALLLAGCGAMAGDSSLGPNPGGGFYGAPNLNVGRVNP* |
Ga0126381_1042066061 | 3300010376 | Tropical Forest Soil | MAKLGLAMILLAILLAACGGSLQGNASAGPNPGGGFYGAPNIDIGRINP* |
Ga0126383_103152654 | 3300010398 | Tropical Forest Soil | GLAMILLTILLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0126383_107062132 | 3300010398 | Tropical Forest Soil | MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP* |
Ga0126383_108278572 | 3300010398 | Tropical Forest Soil | MAKLKLPMILLAILLAGCGGSLRGNASAGPNPGGGFYGAPNIDIGRINP* |
Ga0126383_133542061 | 3300010398 | Tropical Forest Soil | MSRLVLVLIGLAMLLAGCGGSVRGDASAGPNPGGG |
Ga0153925_10336472 | 3300012056 | Attine Ant Fungus Gardens | MARLGPATILLAILLAGCGGSLRGDASAGPNPGGGFYDGPNLNVGRINP* |
Ga0150985_1095696231 | 3300012212 | Avena Fatua Rhizosphere | MNKVALVMIWLPVLLAGCGGSLRGTASAGPNPGGGFYGAPNIDIGRINP* |
Ga0150985_1157550892 | 3300012212 | Avena Fatua Rhizosphere | MLLAALVTLCLAMLLTRCGGSFHGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0137370_105503882 | 3300012285 | Vadose Zone Soil | MNNLKSGLAVICLAMLLAGCGGSFRGNASAGPNPGGGFYGAPNIDIGRINP* |
Ga0150984_1183845521 | 3300012469 | Avena Fatua Rhizosphere | MTKLMLAMIGVAVLLAGCGGDASAGPNPGGGFYGAPNID |
Ga0137413_111758472 | 3300012924 | Vadose Zone Soil | MKKVALVMIWLAALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP* |
Ga0126369_105475813 | 3300012971 | Tropical Forest Soil | MEARMHKIGAVTMLLALLLAGCGGALRGDASSGPNPGGGFYGAPNINIGRINP* |
Ga0126369_120280732 | 3300012971 | Tropical Forest Soil | MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP* |
Ga0182040_117402452 | 3300016387 | Soil | MNKLALAVICLAILLAACGGSLKGDASAGPNPGGGFYGAPNIDN |
Ga0182037_101434882 | 3300016404 | Soil | GMWRSPGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP |
Ga0182038_105616112 | 3300016445 | Soil | MSKLALVLVGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP |
Ga0182038_114091261 | 3300016445 | Soil | MAKLAFVSICVAMLLAGCGGPLRGDANAGPNPGGGFYGAPNINVGRINP |
Ga0066667_119592231 | 3300018433 | Grasslands Soil | MNKIGLAVLWLAMLLVGCAGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0066667_121462861 | 3300018433 | Grasslands Soil | MNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0066662_118667191 | 3300018468 | Grasslands Soil | MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0066669_119081851 | 3300018482 | Grasslands Soil | MNKIGLAVLWLPMLLVGCAGSLRGDASAGPNPGGGFYGAPNIDVGRINP |
Ga0210407_100907842 | 3300020579 | Soil | MTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP |
Ga0210407_101591772 | 3300020579 | Soil | MNKAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP |
Ga0210403_100066465 | 3300020580 | Soil | MDKLGLATILLTILLAGCSGSLRGDANAGPNPGGGFYDGPNLNVGRINP |
Ga0210403_100086834 | 3300020580 | Soil | MDKLGLATILLTILLAGCGGSLRGDASAGPNPGGGFYDGPNLNVGRINP |
Ga0210403_100883173 | 3300020580 | Soil | MARLGPATILLAILLAGCGGSLRGDANAGPNPGGGFYDGPNLNVGRINP |
Ga0210403_104063813 | 3300020580 | Soil | MDKLGLATILLTILLAGCSGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0210401_104809692 | 3300020583 | Soil | MTKLGLAIICSMMLLAGCSSSLKANAGPNPGGGFYGAPNIDIGRINP |
Ga0210401_107657911 | 3300020583 | Soil | NKAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP |
Ga0210400_102114252 | 3300021170 | Soil | MICLAVLLAGCGGRLRGDTSAGPNSGGGFYGAPNIDIGRINP |
Ga0210408_105044472 | 3300021178 | Soil | MSRVALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0213881_101845862 | 3300021374 | Exposed Rock | MSRLVLVLIGLAMLLAGCGGSVRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0210397_104329572 | 3300021403 | Soil | KLGLAIICSMMLLAGCSGSLKGDANAGPNPGGGFYGAPNIDIGRINP |
Ga0210386_102240481 | 3300021406 | Soil | GEGGPMNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0210390_107661062 | 3300021474 | Soil | MNKAGLAMICLAMLLAGCGGSLRRDASAGPNPGGGFYGAPNIRIGRINP |
Ga0210410_104206732 | 3300021479 | Soil | MNKAGLAMICLAMLLAGCGGSLRGDASAGPNPRGGFYGAPNLRIGRINP |
Ga0126371_100632603 | 3300021560 | Tropical Forest Soil | MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0126371_100684044 | 3300021560 | Tropical Forest Soil | MHKIGAVTMLLALLLAGCGGTLRGDASAGPNPGGGFYGAPNINIGRINP |
Ga0126371_101309573 | 3300021560 | Tropical Forest Soil | MRKLTLPTLWFALLAGCSGSFRGDSSVGPNPGGGFYGAPNINVGHINP |
Ga0126371_111980722 | 3300021560 | Tropical Forest Soil | MKDLRLSLTMMCLALLLAGCGSVVGNASAGPNPGGGFYGAPNIDIGRINP |
Ga0126371_130132661 | 3300021560 | Tropical Forest Soil | MSKLAPAVICLAILLTGCGGPLRADANAGPNPGGGFY |
Ga0222729_10397031 | 3300022507 | Soil | MTKLGLAIICSMMLFAGCSSSLKGDANAGPNPGGGFYGAPNIDT |
Ga0222728_10845831 | 3300022508 | Soil | MSKFALVLVGLAMLLAGCGGPLTGDADAGPNPGGGFYGAPNLNVGRINP |
Ga0242662_102332251 | 3300022533 | Soil | AGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP |
Ga0207693_109783962 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | LAIIFLAALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0209465_101013403 | 3300027874 | Tropical Forest Soil | MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINVGHINP |
Ga0308309_101399382 | 3300028906 | Soil | MARLGPATILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP |
Ga0318516_100694322 | 3300031543 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGEFYGAPNIDNGRVNP |
Ga0318516_102014331 | 3300031543 | Soil | MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP |
Ga0318534_106199432 | 3300031544 | Soil | MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP |
Ga0318541_100092004 | 3300031545 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP |
Ga0318528_106316282 | 3300031561 | Soil | VSKFALVLVGLAMLLAGCGGPLTGDADAGPNPGGGFYGAPNLNVGRINP |
Ga0318573_106183251 | 3300031564 | Soil | PMNKLVLAVICLAILLAGWGGSLKGDASAGPNPGGGFYGAPNIDNGRINP |
Ga0310915_102472151 | 3300031573 | Soil | VREGPMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP |
Ga0318572_101957821 | 3300031681 | Soil | MWRSAGGTCVTPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP |
Ga0318496_100338971 | 3300031713 | Soil | CVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVN |
Ga0318500_104249533 | 3300031724 | Soil | MHRVALIIIGLAVLLAGCGGSLRGNASAGPNPGGGFYS |
Ga0318502_101566281 | 3300031747 | Soil | AILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP |
Ga0318494_108980852 | 3300031751 | Soil | VRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP |
Ga0307477_106860441 | 3300031753 | Hardwood Forest Soil | MDKLGLATILLTILLAGCSGSLRGDANAGPNPGGGFYDGPNLDV |
Ga0318554_101412791 | 3300031765 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGVFGAPNIDTGRVYP |
Ga0318557_100655401 | 3300031795 | Soil | ALALVVNEGPMNKLAPAVICIAILLTGCGSPLRPDANAGPNPGGGFYGAPNMNFGRINP |
Ga0318550_101981221 | 3300031797 | Soil | MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRIN |
Ga0318497_103701711 | 3300031805 | Soil | LVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP |
Ga0318544_100200173 | 3300031880 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNINIGRINP |
Ga0306925_119483311 | 3300031890 | Soil | MAKLAFVSICVAMLLAGCGGPLRGDANAGPNPGGGFYGAPNINVG |
Ga0306923_108223401 | 3300031910 | Soil | MNKVALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP |
Ga0310913_108190862 | 3300031945 | Soil | MNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPN |
Ga0318507_100194714 | 3300032025 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFY |
Ga0318559_105548462 | 3300032039 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP |
Ga0318545_101162861 | 3300032042 | Soil | MNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRV |
Ga0318533_108931361 | 3300032059 | Soil | MNKVALVLIGLAMLLVGCGGSLRGDARAGPNPGGGFYGAPNIDIGRINP |
Ga0318513_101364791 | 3300032065 | Soil | MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVN |
Ga0318577_104987151 | 3300032091 | Soil | MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINI |
Ga0307472_1008533553 | 3300032205 | Hardwood Forest Soil | MSKLGLAMICLAMLLAGCAGSLRGDASAGPNPGGGFYGAPN |
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