NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075141

Metagenome / Metatranscriptome Family F075141

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075141
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 50 residues
Representative Sequence MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Number of Associated Samples 86
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.92 %
% of genes near scaffold ends (potentially truncated) 36.13 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (56.303 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.454 % of family members)
Environment Ontology (ENVO) Unclassified
(39.496 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.504 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 20.78%    β-sheet: 0.00%    Coil/Unstructured: 79.22%
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51015202530354045MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINPSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
57.1%42.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Tropical Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Exposed Rock
Avena Fatua Rhizosphere
Populus Rhizosphere
Avena Fatua Rhizosphere
Attine Ant Fungus Gardens
16.0%7.6%3.4%34.5%5.0%10.9%8.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066395_1074960513300004633Tropical Forest SoilMRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIGRINP*
Ga0066690_1077928123300005177SoilMAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDI
Ga0066688_1080466723300005178SoilMAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGACSGRT*
Ga0066671_1041780423300005184SoilMAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0066388_10289643023300005332Tropical Forest SoilMRNLALITLWLAMLLAGCGGSLREDASAGPNPGGGFYGAPNIKIGRINP*
Ga0066388_10425692723300005332Tropical Forest SoilMAKLGLAMFLLAVLLAACGGSLRGNASAGPNPGGGFYGAPNIDVGRINP*
Ga0066388_10785889913300005332Tropical Forest SoilMHKIGAVTMLLALLLAGCGGALRGDASSGPNPGGGFYGAPNINIGRINP*
Ga0070709_1084847313300005434Corn, Switchgrass And Miscanthus RhizosphereLMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP*
Ga0070714_10026672623300005435Agricultural SoilMNKLALAVICFAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070714_10085827623300005435Agricultural SoilKVALVMIWLAVLLAACGASLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070713_10065947513300005436Corn, Switchgrass And Miscanthus RhizosphereMNKLALAVICFAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDIG
Ga0070713_10086229913300005436Corn, Switchgrass And Miscanthus RhizosphereSLAVRGGPMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070713_10242062713300005436Corn, Switchgrass And Miscanthus RhizosphereRVGSRTAGELMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP*
Ga0070711_10015814033300005439Corn, Switchgrass And Miscanthus RhizosphereMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP*
Ga0070706_10065788023300005467Corn, Switchgrass And Miscanthus RhizosphereMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070698_10005459343300005471Corn, Switchgrass And Miscanthus RhizosphereMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070697_10041650013300005536Corn, Switchgrass And Miscanthus RhizosphereRISLAVRGGPMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070696_10081017913300005546Corn, Switchgrass And Miscanthus RhizosphereVSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0066670_1074819413300005560SoilMNKIGLAVLWLAMLLVGCGGSLRGEAKAGPNPGGGFYGGPNINVGRINP*
Ga0066705_1093660023300005569SoilMKKLGLAIIASMMLLAGCGGSFKGDANAAPNPGGGFYGAPNSDIGRINP*
Ga0066694_1005001023300005574SoilMNKVALVMIWLAVLLVGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0066702_1047729823300005575SoilMKKLGLAIIASMMLLAGCGGSFKGDANAAPNPGGGFYGAPNSDIGRINLNPAVG*
Ga0066708_1079755323300005576SoilMAKLGLPMILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNI
Ga0070763_1065820313300005610SoilMARLGPAMILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP*
Ga0066903_10015651623300005764Tropical Forest SoilMRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0066903_10051223453300005764Tropical Forest SoilMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0066903_10232165813300005764Tropical Forest SoilMRNLALITLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIG
Ga0066903_10242873033300005764Tropical Forest SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP*
Ga0066903_10331724713300005764Tropical Forest SoilMAKLGLAMILLAILLAACGGSLRGNASAGPNPGGGFYGAPNIDIGRINPYNAGP*
Ga0066903_10365837623300005764Tropical Forest SoilMRKLTLPTLWFALLAGCSGSFRGDSSVGPNPGGGFYGAPNINVGHINP*
Ga0066903_10783743013300005764Tropical Forest SoilMSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINVGRINP*
Ga0066903_10863590813300005764Tropical Forest SoilMRRLVLATLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIG
Ga0066652_10192253123300006046SoilMNKFALATLWLALLLSGCGGSLHGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070765_10016029823300006176SoilMARLGPATILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP*
Ga0075425_10209719623300006854Populus RhizosphereLREAMVSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0075426_1103651513300006903Populus RhizosphereVSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAP
Ga0126373_1055626033300010048Tropical Forest SoilMKKLALATLWLVLLAGCGGSFRGDADAGPNPGGGFYGAPNINVGRVNP*
Ga0126373_1181994913300010048Tropical Forest SoilMEARMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0126373_1185204823300010048Tropical Forest SoilMEARMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126372_1211166013300010360Tropical Forest SoilMNKFRLAMLCFTALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126378_1188361513300010361Tropical Forest SoilMNKFRLAMLCFMALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINPQ*
Ga0126378_1219399913300010361Tropical Forest SoilMSKLVLVLIGLAMLLAGCGGLVRGDASAGPNPGGGFYEAPNIDIGRIDP*
Ga0126378_1272865723300010361Tropical Forest SoilLRLPVICSMMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0134128_1197065323300010373Terrestrial SoilALLLAGCGAMAGDSSLGPNPGGGFYGAPNLNVGRVNP*
Ga0126381_10420660613300010376Tropical Forest SoilMAKLGLAMILLAILLAACGGSLQGNASAGPNPGGGFYGAPNIDIGRINP*
Ga0126383_1031526543300010398Tropical Forest SoilGLAMILLTILLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126383_1070621323300010398Tropical Forest SoilMSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0126383_1082785723300010398Tropical Forest SoilMAKLKLPMILLAILLAGCGGSLRGNASAGPNPGGGFYGAPNIDIGRINP*
Ga0126383_1335420613300010398Tropical Forest SoilMSRLVLVLIGLAMLLAGCGGSVRGDASAGPNPGGG
Ga0153925_103364723300012056Attine Ant Fungus GardensMARLGPATILLAILLAGCGGSLRGDASAGPNPGGGFYDGPNLNVGRINP*
Ga0150985_10956962313300012212Avena Fatua RhizosphereMNKVALVMIWLPVLLAGCGGSLRGTASAGPNPGGGFYGAPNIDIGRINP*
Ga0150985_11575508923300012212Avena Fatua RhizosphereMLLAALVTLCLAMLLTRCGGSFHGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0137370_1055038823300012285Vadose Zone SoilMNNLKSGLAVICLAMLLAGCGGSFRGNASAGPNPGGGFYGAPNIDIGRINP*
Ga0150984_11838455213300012469Avena Fatua RhizosphereMTKLMLAMIGVAVLLAGCGGDASAGPNPGGGFYGAPNID
Ga0137413_1117584723300012924Vadose Zone SoilMKKVALVMIWLAALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126369_1054758133300012971Tropical Forest SoilMEARMHKIGAVTMLLALLLAGCGGALRGDASSGPNPGGGFYGAPNINIGRINP*
Ga0126369_1202807323300012971Tropical Forest SoilMRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0182040_1174024523300016387SoilMNKLALAVICLAILLAACGGSLKGDASAGPNPGGGFYGAPNIDN
Ga0182037_1014348823300016404SoilGMWRSPGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0182038_1056161123300016445SoilMSKLALVLVGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP
Ga0182038_1140912613300016445SoilMAKLAFVSICVAMLLAGCGGPLRGDANAGPNPGGGFYGAPNINVGRINP
Ga0066667_1195922313300018433Grasslands SoilMNKIGLAVLWLAMLLVGCAGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0066667_1214628613300018433Grasslands SoilMNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0066662_1186671913300018468Grasslands SoilMAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGRINP
Ga0066669_1190818513300018482Grasslands SoilMNKIGLAVLWLPMLLVGCAGSLRGDASAGPNPGGGFYGAPNIDVGRINP
Ga0210407_1009078423300020579SoilMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP
Ga0210407_1015917723300020579SoilMNKAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP
Ga0210403_1000664653300020580SoilMDKLGLATILLTILLAGCSGSLRGDANAGPNPGGGFYDGPNLNVGRINP
Ga0210403_1000868343300020580SoilMDKLGLATILLTILLAGCGGSLRGDASAGPNPGGGFYDGPNLNVGRINP
Ga0210403_1008831733300020580SoilMARLGPATILLAILLAGCGGSLRGDANAGPNPGGGFYDGPNLNVGRINP
Ga0210403_1040638133300020580SoilMDKLGLATILLTILLAGCSGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0210401_1048096923300020583SoilMTKLGLAIICSMMLLAGCSSSLKANAGPNPGGGFYGAPNIDIGRINP
Ga0210401_1076579113300020583SoilNKAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP
Ga0210400_1021142523300021170SoilMICLAVLLAGCGGRLRGDTSAGPNSGGGFYGAPNIDIGRINP
Ga0210408_1050444723300021178SoilMSRVALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0213881_1018458623300021374Exposed RockMSRLVLVLIGLAMLLAGCGGSVRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0210397_1043295723300021403SoilKLGLAIICSMMLLAGCSGSLKGDANAGPNPGGGFYGAPNIDIGRINP
Ga0210386_1022404813300021406SoilGEGGPMNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0210390_1076610623300021474SoilMNKAGLAMICLAMLLAGCGGSLRRDASAGPNPGGGFYGAPNIRIGRINP
Ga0210410_1042067323300021479SoilMNKAGLAMICLAMLLAGCGGSLRGDASAGPNPRGGFYGAPNLRIGRINP
Ga0126371_1006326033300021560Tropical Forest SoilMRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0126371_1006840443300021560Tropical Forest SoilMHKIGAVTMLLALLLAGCGGTLRGDASAGPNPGGGFYGAPNINIGRINP
Ga0126371_1013095733300021560Tropical Forest SoilMRKLTLPTLWFALLAGCSGSFRGDSSVGPNPGGGFYGAPNINVGHINP
Ga0126371_1119807223300021560Tropical Forest SoilMKDLRLSLTMMCLALLLAGCGSVVGNASAGPNPGGGFYGAPNIDIGRINP
Ga0126371_1301326613300021560Tropical Forest SoilMSKLAPAVICLAILLTGCGGPLRADANAGPNPGGGFY
Ga0222729_103970313300022507SoilMTKLGLAIICSMMLFAGCSSSLKGDANAGPNPGGGFYGAPNIDT
Ga0222728_108458313300022508SoilMSKFALVLVGLAMLLAGCGGPLTGDADAGPNPGGGFYGAPNLNVGRINP
Ga0242662_1023322513300022533SoilAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP
Ga0207693_1097839623300025915Corn, Switchgrass And Miscanthus RhizosphereLAIIFLAALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0209465_1010134033300027874Tropical Forest SoilMRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINVGHINP
Ga0308309_1013993823300028906SoilMARLGPATILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP
Ga0318516_1006943223300031543SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGEFYGAPNIDNGRVNP
Ga0318516_1020143313300031543SoilMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318534_1061994323300031544SoilMSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP
Ga0318541_1000920043300031545SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0318528_1063162823300031561SoilVSKFALVLVGLAMLLAGCGGPLTGDADAGPNPGGGFYGAPNLNVGRINP
Ga0318573_1061832513300031564SoilPMNKLVLAVICLAILLAGWGGSLKGDASAGPNPGGGFYGAPNIDNGRINP
Ga0310915_1024721513300031573SoilVREGPMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318572_1019578213300031681SoilMWRSAGGTCVTPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0318496_1003389713300031713SoilCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVN
Ga0318500_1042495333300031724SoilMHRVALIIIGLAVLLAGCGGSLRGNASAGPNPGGGFYS
Ga0318502_1015662813300031747SoilAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318494_1089808523300031751SoilVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0307477_1068604413300031753Hardwood Forest SoilMDKLGLATILLTILLAGCSGSLRGDANAGPNPGGGFYDGPNLDV
Ga0318554_1014127913300031765SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGVFGAPNIDTGRVYP
Ga0318557_1006554013300031795SoilALALVVNEGPMNKLAPAVICIAILLTGCGSPLRPDANAGPNPGGGFYGAPNMNFGRINP
Ga0318550_1019812213300031797SoilMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRIN
Ga0318497_1037017113300031805SoilLVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0318544_1002001733300031880SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNINIGRINP
Ga0306925_1194833113300031890SoilMAKLAFVSICVAMLLAGCGGPLRGDANAGPNPGGGFYGAPNINVG
Ga0306923_1082234013300031910SoilMNKVALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0310913_1081908623300031945SoilMNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPN
Ga0318507_1001947143300032025SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFY
Ga0318559_1055484623300032039SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318545_1011628613300032042SoilMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRV
Ga0318533_1089313613300032059SoilMNKVALVLIGLAMLLVGCGGSLRGDARAGPNPGGGFYGAPNIDIGRINP
Ga0318513_1013647913300032065SoilMWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVN
Ga0318577_1049871513300032091SoilMSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINI
Ga0307472_10085335533300032205Hardwood Forest SoilMSKLGLAMICLAMLLAGCAGSLRGDASAGPNPGGGFYGAPN


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