Metagenome / Metatranscriptome Family F075178

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075178
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	61 residues
Representative Sequence	MTDYNIGPGVQQAMADAGDEPRSDEQFIILEPGHKISQTFGRDAVYWYYEEDNATRRVPF
Number of Associated Samples	80
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.75 %
% of genes near scaffold ends (potentially truncated)	22.69 %
% of genes from short scaffolds (< 2000 bps)	71.43 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.630 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (19.328 % of family members)
Environment Ontology (ENVO)	Unclassified (36.134 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.462 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.95% β-sheet: 26.14% Coil/Unstructured: 65.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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SCOP family	SCOP domain	Representative PDB	TM-score
b.30.5.7: Galactose mutarotase-like	d1jova_	1jov	0.64
b.30.5.4: Galactose mutarotase-like	d1lura_	1lur	0.64
b.69.4.1: WD40 repeat-like	d1nr0a2	1nr0	0.64
b.1.10.3: Clathrin adaptor appendage domain	d1r4xa1	1r4x	0.64
b.69.4.1: WD40 repeat-like	d7m3xa_	7m3x	0.62

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF14659	Phage_int_SAM_3	1.68
PF01391	Collagen	1.68
PF01510	Amidase_2	1.68
PF13481	AAA_25	0.84
PF01541	GIY-YIG	0.84
PF00145	DNA_methylase	0.84
PF00041	fn3	0.84
PF07508	Recombinase	0.84
PF14216	DUF4326	0.84
PF00847	AP2	0.84
PF01507	PAPS_reduct	0.84
PF04233	Phage_Mu_F	0.84
PF08774	VRR_NUC	0.84
PF11752	DUF3309	0.84
PF05065	Phage_capsid	0.84
PF00589	Phage_integrase	0.84
PF06737	Transglycosylas	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.84
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.84
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
All Organisms	root	All Organisms	24.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
cellular organisms	root	All Organisms → cellular organisms	18.49 %
Viruses	superkingdom	All Organisms → Viruses	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	18.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.68 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.36 %
Lentisphaerae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae	2.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.52 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.68 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.84 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.84 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.36 %
unclassified Lentisphaerota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota	2.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.52 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.84 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.84 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.84 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.36 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	2.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.52 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.68 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.84 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.20 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.36 %
Lentisphaerae bacterium GWF2_52_8	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	2.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.52 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.68 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.68 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.84 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.84 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_441088	Not Available	1835	Open in IMG/M
2170459003\|FZ032L002HLKSJ	Not Available	502	Open in IMG/M
2199352025\|deepsgr__Contig_102879	All Organisms → Viruses → Predicted Viral	1131	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2207030	Not Available	974	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105775563	Not Available	2541	Open in IMG/M
3300000550\|F24TB_10124158	Not Available	801	Open in IMG/M
3300000559\|F14TC_100296506	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	1735	Open in IMG/M
3300000559\|F14TC_101216828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1335	Open in IMG/M
3300000955\|JGI1027J12803_108469586	Not Available	531	Open in IMG/M
3300001431\|F14TB_102120515	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	2600	Open in IMG/M
3300002568\|C688J35102_120294885	Not Available	973	Open in IMG/M
3300002899\|JGIcombinedJ43975_10005428	Not Available	2068	Open in IMG/M
3300004281\|Ga0066397_10008951	Not Available	1234	Open in IMG/M
3300004281\|Ga0066397_10009616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1211	Open in IMG/M
3300004463\|Ga0063356_100024233	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5739	Open in IMG/M
3300004633\|Ga0066395_10006185	Not Available	4222	Open in IMG/M
3300004633\|Ga0066395_10013542	Not Available	3083	Open in IMG/M
3300004633\|Ga0066395_10019886	Not Available	2653	Open in IMG/M
3300004633\|Ga0066395_10050140	Not Available	1844	Open in IMG/M
3300004633\|Ga0066395_10385048	Not Available	787	Open in IMG/M
3300004633\|Ga0066395_10893734	Not Available	537	Open in IMG/M
3300005289\|Ga0065704_10457487	Not Available	700	Open in IMG/M
3300005289\|Ga0065704_10654079	Not Available	581	Open in IMG/M
3300005294\|Ga0065705_10691352	Not Available	653	Open in IMG/M
3300005332\|Ga0066388_108414938	Not Available	514	Open in IMG/M
3300005347\|Ga0070668_100253997	Not Available	1460	Open in IMG/M
3300005356\|Ga0070674_102169898	Not Available	507	Open in IMG/M
3300005437\|Ga0070710_10665367	Not Available	731	Open in IMG/M
3300005439\|Ga0070711_101562916	Not Available	576	Open in IMG/M
3300005526\|Ga0073909_10297603	Not Available	732	Open in IMG/M
3300005535\|Ga0070684_100022766	Not Available	5231	Open in IMG/M
3300005713\|Ga0066905_100000314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12400	Open in IMG/M
3300005713\|Ga0066905_100129126	Not Available	1780	Open in IMG/M
3300005719\|Ga0068861_100000091	All Organisms → cellular organisms → Bacteria	43795	Open in IMG/M
3300005764\|Ga0066903_100000070	All Organisms → cellular organisms → Bacteria	43446	Open in IMG/M
3300005764\|Ga0066903_100391459	Not Available	2279	Open in IMG/M
3300005764\|Ga0066903_102963711	Not Available	920	Open in IMG/M
3300005764\|Ga0066903_105434646	Not Available	672	Open in IMG/M
3300005937\|Ga0081455_10017829	Not Available	6788	Open in IMG/M
3300006175\|Ga0070712_100402214	Not Available	1131	Open in IMG/M
3300006175\|Ga0070712_100543792	Not Available	978	Open in IMG/M
3300006577\|Ga0074050_10079120	Not Available	837	Open in IMG/M
3300006852\|Ga0075433_11494297	Not Available	584	Open in IMG/M
3300006854\|Ga0075425_100004226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14768	Open in IMG/M
3300006854\|Ga0075425_100059070	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4299	Open in IMG/M
3300006854\|Ga0075425_101130519	Not Available	891	Open in IMG/M
3300006854\|Ga0075425_103026865	Not Available	514	Open in IMG/M
3300006871\|Ga0075434_100909788	Not Available	895	Open in IMG/M
3300007076\|Ga0075435_100900307	Not Available	772	Open in IMG/M
3300007076\|Ga0075435_101283268	Not Available	641	Open in IMG/M
3300009094\|Ga0111539_10058977	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium GWF2_52_8	4553	Open in IMG/M
3300009094\|Ga0111539_12149065	Not Available	648	Open in IMG/M
3300009094\|Ga0111539_13295214	Not Available	520	Open in IMG/M
3300009156\|Ga0111538_10867541	All Organisms → Viruses → Predicted Viral	1143	Open in IMG/M
3300009157\|Ga0105092_10701065	Not Available	589	Open in IMG/M
3300009553\|Ga0105249_12768403	Not Available	562	Open in IMG/M
3300009792\|Ga0126374_10198983	Not Available	1266	Open in IMG/M
3300010047\|Ga0126382_10122389	Not Available	1728	Open in IMG/M
3300010047\|Ga0126382_10142154	All Organisms → Viruses → Predicted Viral	1629	Open in IMG/M
3300010358\|Ga0126370_10040636	Not Available	2886	Open in IMG/M
3300010358\|Ga0126370_11838606	Not Available	587	Open in IMG/M
3300010359\|Ga0126376_10251435	Not Available	1504	Open in IMG/M
3300010359\|Ga0126376_10694909	Not Available	978	Open in IMG/M
3300010360\|Ga0126372_10765236	Not Available	952	Open in IMG/M
3300010362\|Ga0126377_10011800	Not Available	6855	Open in IMG/M
3300010362\|Ga0126377_10211266	Not Available	1866	Open in IMG/M
3300010362\|Ga0126377_12634495	Not Available	578	Open in IMG/M
3300010366\|Ga0126379_10000526	All Organisms → cellular organisms → Bacteria	21380	Open in IMG/M
3300010366\|Ga0126379_10009287	Not Available	6806	Open in IMG/M
3300010366\|Ga0126379_10036870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3893	Open in IMG/M
3300010366\|Ga0126379_10049642	Not Available	3445	Open in IMG/M
3300010366\|Ga0126379_11055080	Not Available	918	Open in IMG/M
3300010376\|Ga0126381_101010830	Not Available	1200	Open in IMG/M
3300010398\|Ga0126383_10751359	Not Available	1056	Open in IMG/M
3300010398\|Ga0126383_11865570	Not Available	689	Open in IMG/M
3300012200\|Ga0137382_10219811	All Organisms → Viruses → Predicted Viral	1310	Open in IMG/M
3300012203\|Ga0137399_10552960	Not Available	967	Open in IMG/M
3300012469\|Ga0150984_103648719	Not Available	532	Open in IMG/M
3300012948\|Ga0126375_10001345	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	7889	Open in IMG/M
3300012948\|Ga0126375_10343009	All Organisms → Viruses → Predicted Viral	1056	Open in IMG/M
3300012971\|Ga0126369_10210125	Not Available	1884	Open in IMG/M
3300012971\|Ga0126369_12076647	Not Available	656	Open in IMG/M
3300013102\|Ga0157371_10160995	Not Available	1603	Open in IMG/M
3300013308\|Ga0157375_12165606	Not Available	662	Open in IMG/M
3300014745\|Ga0157377_10390301	Not Available	945	Open in IMG/M
3300015371\|Ga0132258_10012645	Not Available	17789	Open in IMG/M
3300015371\|Ga0132258_10318928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3830	Open in IMG/M
3300015371\|Ga0132258_11936710	Not Available	1484	Open in IMG/M
3300015373\|Ga0132257_100078247	Not Available	3759	Open in IMG/M
3300015373\|Ga0132257_104609718	Not Available	502	Open in IMG/M
3300015374\|Ga0132255_104057166	Not Available	621	Open in IMG/M
3300016270\|Ga0182036_10678219	Not Available	832	Open in IMG/M
3300016294\|Ga0182041_10910401	Not Available	791	Open in IMG/M
3300021403\|Ga0210397_10001088	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17557	Open in IMG/M
3300025901\|Ga0207688_10821631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300025907\|Ga0207645_10127514	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1655	Open in IMG/M
3300025915\|Ga0207693_10363263	Not Available	1133	Open in IMG/M
3300025918\|Ga0207662_10002692	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8960	Open in IMG/M
3300025923\|Ga0207681_11020584	Not Available	694	Open in IMG/M
3300025926\|Ga0207659_10025110	Not Available	3999	Open in IMG/M
3300025938\|Ga0207704_10619828	Not Available	888	Open in IMG/M
3300025949\|Ga0207667_11833509	Not Available	570	Open in IMG/M
3300026694\|Ga0208346_100002	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3264	Open in IMG/M
3300027646\|Ga0209466_1046003	Not Available	883	Open in IMG/M
3300027675\|Ga0209077_1000035	All Organisms → cellular organisms → Bacteria	32546	Open in IMG/M
3300027821\|Ga0209811_10000123	All Organisms → cellular organisms → Bacteria	34890	Open in IMG/M
3300027821\|Ga0209811_10001433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8134	Open in IMG/M
3300027821\|Ga0209811_10060463	Not Available	1310	Open in IMG/M
3300027874\|Ga0209465_10052573	Not Available	1950	Open in IMG/M
3300027874\|Ga0209465_10094783	Not Available	1461	Open in IMG/M
3300027874\|Ga0209465_10253008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	882	Open in IMG/M
3300027874\|Ga0209465_10610533	Not Available	540	Open in IMG/M
3300031545\|Ga0318541_10329766	Not Available	852	Open in IMG/M
3300031561\|Ga0318528_10412586	Not Available	725	Open in IMG/M
3300031890\|Ga0306925_11869330	Not Available	572	Open in IMG/M
3300031981\|Ga0318531_10583808	Not Available	506	Open in IMG/M
3300032076\|Ga0306924_10741602	Not Available	1100	Open in IMG/M
3300032261\|Ga0306920_100268616	Not Available	2543	Open in IMG/M
3300033290\|Ga0318519_10921353	Not Available	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.91%
Host-Associated	Host-Associated	31.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.23%
Plants	Host-Associated → Plants	31.09%
Aquatic	Environmental → Aquatic	1.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.61%
Freshwater	Environmental → Aquatic → Freshwater	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.50%
Loam	Environmental → Terrestrial → Soil → Loam	27.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.04%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.68%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.08%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.04%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.20%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	2.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.84%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.84%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026694	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN611 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0530.00001210	2162886007	Switchgrass Rhizosphere	MTDYTIGVGVAQAIADAGDEPRSDEQYVIFDEGHKISQTYGRDAIYWYVEEDNAVRRVPF
E4A_08430760	2170459003	Grass Soil	RFGPGVAQAMADHGDEPRSDENFIVLREGDKISQTFGRDAQYFWMERDNVVQRSPF
deepsgr_01586050	2199352025	Soil	MADFNVGPGVAQAIADNNDEARSDEQFIILADGDKVSQTFARDAIYYWIERDNSVKRSPF
ICChiseqgaiiDRAFT_22070303	3300000033	Soil	MTDSYVIGPGVAQAIADHGDEPRSDEQYVILEPGEKISQTFARDAVYYWIERDNAVKRLPF*
INPhiseqgaiiFebDRAFT_1057755632	3300000364	Soil	MADYVIGPGVAQAISDSGDEPRSDEQFIILEPGHKISQTFGRDAVYWYYEEDNATRRLPF
F24TB_101241582	3300000550	Soil	MTDFVVGPGVAQAIAESGDEARSDEQFVIVEPGHKVSQTFGRDAIYYWLEEDNSTRRVPF
F14TC_1002965063	3300000559	Soil	MTDFVVGPGVAQAIAESGDEARSDEQFVIVEPGHKVSQTFGRDAIYYWIERDNSVKRSPF
F14TC_1012168283	3300000559	Soil	MTDWVIGPGVWQAMADAGDEPRSHEMYIVTEEGHKVSQTIGRDAIYYWVQEDNRTSRTPFR*
JGI1027J12803_1084695861	3300000955	Soil	VIGPGVAQAISDSGDEPRSDEQFIILEPGHKISQTFGRDAVYWYYEEDNATRRLPF*
F14TB_1021205151	3300001431	Soil	MTDFVVGPGVAQAIAESGDEARSDEQFVIVEPGHKVSQTFGRDAIYYWLEEDNATRRVPF
C688J35102_1202948852	3300002568	Soil	MSDWNIGVGVQQAISDAGDEPRSDEQYIVLEPGHKISQTFGRDAVYLYYEEDNATRRNPFR*
JGIcombinedJ43975_100054288	3300002899	Soil	MTDFSIGPGVLEAITAANDEPRSDEQYVILDEGHKVSQTFARDAVYYWLEEDNAVRRTPF
Ga0066397_100089514	3300004281	Tropical Forest Soil	NSDLPALKEDEVTDYNIGPGVQQAMTDAGDEPRSDEQYIILDPGHKISQTFGRDSVYWYFEEDSAVRRISFPG*
Ga0066397_100096161	3300004281	Tropical Forest Soil	RREGACGQAMTYVIGPGVQQAIADAGDEARSDEIAVVTDDEGWKITQTYARDGIYYWLREDNAVRRVPF*
Ga0063356_10002423310	3300004463	Arabidopsis Thaliana Rhizosphere	MTEYVIGPGVAQAILDAGDEPRSDEQYVILDPGHKVSQTFGRDGIYWWYEEDNATRRVAF
Ga0066395_1000618511	3300004633	Tropical Forest Soil	MTDYNIGPGVQQAMTEAGDEPRSDEQFIILDAGHKISQTFGRDAVYWYYEEDNATRRVPF
Ga0066395_100135422	3300004633	Tropical Forest Soil	MTDYNIGPGVQQAMADAGDEPRSDEQFIILEPGHKISQTFGRDAVYWYYEEDNATRRVPF
Ga0066395_100198864	3300004633	Tropical Forest Soil	MNTEDTYSIGPGVQQAMADHGDVPRSDEQFVILREGHQISMTFGRDSLYFWLQEDNATRRVPFR*
Ga0066395_100501403	3300004633	Tropical Forest Soil	MTDDQHPYSIGIGVQQAMADAGDEPRSDEQFIILLDGHQVSQTFGRDAVYYWLEEDNATKRLPFR*
Ga0066395_103850482	3300004633	Tropical Forest Soil	PQMVGDEYVVGPGVLQAMESAGDEPRSDEQFIISIPGHQVSQTFGRDAVYYYYEEDNRTQRLPFR*
Ga0066395_108937342	3300004633	Tropical Forest Soil	MDVVYNIGPGVQQAMTDANDEPRSDEQFVILEPGHKISQTFGRDAVYWYY
Ga0065704_104574872	3300005289	Switchgrass Rhizosphere	MPSTIYTIGPGVAQAIADSGDEPRSDEQFVILEPGHKVSQTFGRDGVYYYYEEDNATRRVAF*
Ga0065704_106540792	3300005289	Switchgrass Rhizosphere	MTDSYVIGPGVAQAISDQGDEPRSDEQYIILEPGEKISQTFARDAIYYWIERDNAVKRLPF*
Ga0065705_106913521	3300005294	Switchgrass Rhizosphere	TTMTDSYVIGPGVAQAISDQGDEPRSDEQYIILEPGEKISQTFARDAIYYWIERDNAVKRLPF*
Ga0066388_1084149382	3300005332	Tropical Forest Soil	MTEYVIGPGVQNSILEHNDEARSDEQYVVLEPGEKISQTFARDAVYYWLERDNAVRRCPF
Ga0070668_1002539971	3300005347	Switchgrass Rhizosphere	CAEGRLVMADYVIGPGVAQAIADNNDEPRSDEQFVILEPGHKVSQTFARDAIYWYYEEDNATRRVSF*
Ga0070674_1021698982	3300005356	Miscanthus Rhizosphere	MTDFVVGPGIEQALAEHDDEARSDEQFVILREGEKVSQTFGTLGIYYWMEHDNVVKMSPF
Ga0070710_106653672	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MAEFSIGPGVAQAIADNGDEPRSDEQFVILRDGDKISQTFGRDRIYYWIERDNAVRMSPF
Ga0070711_1015629162	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDGYSIGPGVQQAMVDAGDEPRSDEQFIILREGHQVSQTFGRDAVYYWVQEDNATRRVPFR*
Ga0073909_102976031	3300005526	Surface Soil	MADYVIGPGVAQSIADHQDEPRSDEQFIILEPGEKVSQTIARDAIYYWLERDNATRRVAF
Ga0070684_10002276616	3300005535	Corn Rhizosphere	MTDYSIGPGVAQAISDSADEARSDEQYIVLEEGHKISQTFARDAVYYWLQEDNAVRRCPF
Ga0066905_1000003149	3300005713	Tropical Forest Soil	VTDYNIGPGVQQAMTDAGDEPRSDEQYIILDPGHKISQTFGRDSVYWYFEEDSAVRRISFPG*
Ga0066905_1001291263	3300005713	Tropical Forest Soil	MTYVIGPGVQQAIADAGDEARSDEIAVVTDDEGWKITQTYARDGIYYWLREDNAVRRVPF
Ga0068861_10000009122	3300005719	Switchgrass Rhizosphere	MADYVIGPGVAQAIADAGDEPRSDEQFIILQEGRKVSQTFARDAVYYWLQEDNRTNRVPFR*
Ga0066903_10000007024	3300005764	Tropical Forest Soil	MDVVYNIGPGVQQAMTDANDEPRSDEQFVILEPGHKISQTFGRDAVYWYYEEDNATRRLPF*
Ga0066903_1003914597	3300005764	Tropical Forest Soil	MSDYVIGPGVAEAIAAAGDEARSDEQFVILEEGHKISQTFGRDAVYYYIEEDNRTNRLPFR*
Ga0066903_1029637113	3300005764	Tropical Forest Soil	MSEYVIGPGVQQAMADAGDEPRSDEQYIIGTPGHKISQTFGRDAQYFWLEEDNAVRRAPF
Ga0066903_1054346461	3300005764	Tropical Forest Soil	MTTDDTTYSIGPGVQQAMADAGDEPRSDEQFIILREGHQISQTFGRDAVYYYVEEDNATRRCPFR
Ga0081455_1001782915	3300005937	Tabebuia Heterophylla Rhizosphere	MTDYTVGPGVAQAISDNGDEARSDEQYVILEPGEKVSQTFARDGIYYWIERDNAVRRVPF
Ga0070712_1004022143	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDGYSIGPGVQQAMVDAGDEPRSDEQFIILREGDKVSQTFGRDFIYYWMERDNAVKMSPF*
Ga0070712_1005437923	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	WPTWSASVADYSIGPGVAQAIADNADEPRGDEQFVILREGDKVSQTFARDAIYYWYESENAVKRTPF*
Ga0074050_100791203	3300006577	Soil	LGADLVVTDFNVGPGVQQALADNGDEARSDEQFVILLDGDKVSQTFGRDAIYYWIERDNSVKRSPF*
Ga0075433_114942972	3300006852	Populus Rhizosphere	MTDYVIGPGVAQAISDNGDEPRSDEQFVILEPGHKISQTFARDAVYWYYEEDNATRRVVF
Ga0075425_10000422631	3300006854	Populus Rhizosphere	MDYNIGPGVAQAIADNGDEPRSDEQFVILEPGHKVSQTFARDAIYWYYEEDNATRRVVF*
Ga0075425_1000590701	3300006854	Populus Rhizosphere	MTDYVIGPGVAQAISDNGDEPRSDEQFVILEPGHKVSQTFARDAIYWYYEEDNATRRVVF
Ga0075425_1011305192	3300006854	Populus Rhizosphere	MADYSVGPGVAQAISDSGDEARSDEQYIVLEEGHKISQTFARDAVYYWLQEDNAVRRCPF
Ga0075425_1030268651	3300006854	Populus Rhizosphere	MTDYVIGPGVAQAISDNGDEPRSDEQFVILEPGHKVSQTFARDAIYWYYEED
Ga0075434_1009097883	3300006871	Populus Rhizosphere	MTDYVIGPGVAQAISDNGDEPRSDEQFVILEPGLKISQTFARDAVYWYYEEDNATRRVVF
Ga0075435_1009003072	3300007076	Populus Rhizosphere	MTDYVIGPGVAQAISDNGDEPRSDEQFVILEEGHKVSQTFGRDAVYYWLQEDNRTNRVPFR*
Ga0075435_1012832683	3300007076	Populus Rhizosphere	MSDYVIGPGVAQAIADAGDEPRSDEQFVILEEGHKVSQTFGRDAVYYWLQEDN
Ga0111539_100589771	3300009094	Populus Rhizosphere	MPDWNVGPGVAQAIADNGDEARSDEQFVLLTNGDKVSQTFARDAIYYWLERDNAVRRSPF
Ga0111539_121490653	3300009094	Populus Rhizosphere	MTDSYVIGPGVAQAISDYGDEPRSDEQYMILEPGEKISQTFARDAIYYWIERDNAVKRLPF*
Ga0111539_132952142	3300009094	Populus Rhizosphere	VSDWNVGPGVRIAMEDAGDEARSDEQFILLAEGDKISQTFGRDAIYYWYERDNLVKRSPF
Ga0111538_108675413	3300009156	Populus Rhizosphere	VTDYAIGPGVAQAISDYGDEPRSDEQYMILEPGEKISQTFARDAIYYWIERDNAVKRLPF
Ga0105092_107010652	3300009157	Freshwater Sediment	MSEYTVGPGVAEAIAAAGDEARSDEQYVILEQGHKVSQTFARDAIYYYLEEDNAVRRCPF
Ga0105249_127684032	3300009553	Switchgrass Rhizosphere	VTEYVIGPGVAQAISDSNDEARSDEQYVILEPGEKISQTFARDAVYYWIEKDNAVRRCPF
Ga0126374_101989832	3300009792	Tropical Forest Soil	VSEYSIGPGVLQAMADAGDEPRSDEQYVILAEGHKISQTFGRDALYYWLEEDNAVRRAPF
Ga0126382_101223891	3300010047	Tropical Forest Soil	MTDYSIGPGVQQAMTDAGDEPRSDEQYIILDPGHKISQTFGRDSVYWYFEEDSAVRRISF
Ga0126382_101421542	3300010047	Tropical Forest Soil	MDFTIGPGVAQAMADAGDEPRSDEIYIVNVDGAKVSQTFGRHAVYYWLEEDNAVRRVPF*
Ga0126370_100406367	3300010358	Tropical Forest Soil	MSDYSIGPGVQAAMDAAGDEPRSDEQFVILEEGHKISQTFGRDGVYYWLQEDNATRRVPFQ*
Ga0126370_118386062	3300010358	Tropical Forest Soil	MAYNIGPGVQQAMADAGDEPRSDEQFLILDEGHKVIQTFGRDGVYYWIEEDNRTSRVPFR
Ga0126376_102514354	3300010359	Tropical Forest Soil	YDVYRAPRRTVLTMTDYSIGPGVQQAMTEAGDEPRSDEQFIILDAGRKISQTFGRDAIYWYYEEDNAVRRLPF*
Ga0126376_106949092	3300010359	Tropical Forest Soil	VTDTEYSIGPGVQQAIADAGDEPRSDEQFIILREGHQVSQTFGRDAVYYYIQEDNSTRRVPF*
Ga0126372_107652362	3300010360	Tropical Forest Soil	MADYVIGPGVAEAIAAAGDEARSDEQFVILEEGHKISQTFGRDAVYYYIEEDNRTNRLPFR*
Ga0126377_1001180011	3300010362	Tropical Forest Soil	MTDFNVGPGVQQAMADNGDEPRSDELYVITTEGHKISETYSTGGLYLYYEEDNRVARCPFR*
Ga0126377_102112662	3300010362	Tropical Forest Soil	MTEMTFNVGPGVLQAMQDNGDEPRSDELYVITTEGHKVSETYSTGGIYLYYEEDNRTARCPFR*
Ga0126377_126344951	3300010362	Tropical Forest Soil	MTEYTIGPGVAQAIADNQDEARSDEQYVILEPGEKISQTFARDGVYYWIEKDNAVRRLPF
Ga0126379_1000052633	3300010366	Tropical Forest Soil	MTEYVIGPGVQQAMADAGDEPRSDEQYIIATDGHKISQTFGRDALYYWLEEDNAVRRAPF
Ga0126379_100092877	3300010366	Tropical Forest Soil	MDVSYSIGPGVQQAMADAGDVPRSDEQFIILEPGHKVSQTFGRDAVYYWLEEDNATRRCPF*
Ga0126379_100368702	3300010366	Tropical Forest Soil	MEQNEAGFVVGPGVAQAMADAGDEPRSDEMYLVLEDGRKISQTFGRAAVYYWLEEDNAVRRVPFE*
Ga0126379_100496422	3300010366	Tropical Forest Soil	MSDYNIGPGVQAAMDANSDEPRSDEQFIILEEGHKISQTFGRDAVYYWLQEDNATQRVPFR*
Ga0126379_110550802	3300010366	Tropical Forest Soil	MSDVPYSIGPGVQQAMVEAGDEPRSDEQYIILRAGHQISQTFGRDATYYWLEEDNAVNRVPFQR*
Ga0126381_1010108304	3300010376	Tropical Forest Soil	ARQSHSGTRGDTIMTDYNVRPGVAQAIADAGDEQRSDEQYIILDEDNKISRTFGRDAIYYYYEADNATRRTPF*
Ga0126383_107513592	3300010398	Tropical Forest Soil	MTDGYVIGPGVSEAIAAAGDEPRSDEQYIVLTPGHQISMTFGRDAIYYYYAEDNAVRRVPF*
Ga0126383_118655702	3300010398	Tropical Forest Soil	MTDYNIGPGVLAAMTEAQDEPRSDEQFIILDAGHKISQTFGRDAVYWYYEEDNATRRVPFPG*
Ga0137382_102198114	3300012200	Vadose Zone Soil	MTDYVIGPGVADAIAQNGDEPRSDEQFVILEEGHKVSQTFARDAVYYWLQEDNRTQRVPFR*
Ga0137399_105529602	3300012203	Vadose Zone Soil	MTEFSAGPGIAQAVADAGDELRSDEQYVVLDEGHKISQTYGRDAIYWYYEEDNAIRRVPF
Ga0150984_1036487192	3300012469	Avena Fatua Rhizosphere	LMSEYVIGPGVAQAIVDAGDEPRSDEQYIIMAEGHKISQTFGRDAQYFWLEEDNAVRRAPF*
Ga0126375_100013457	3300012948	Tropical Forest Soil	MAYNIGPGVQQAMADAGDEPRSDEQFVILDEGHKVSQTFGRDGVYYWIEEDNRTSRVPFR
Ga0126375_103430092	3300012948	Tropical Forest Soil	MTDYSIGPGVLAAMTEAQDEPRSDEQFIILDAGHKISQTFGRDAVYWYYEEDNATHRVPFPG*
Ga0126369_102101252	3300012971	Tropical Forest Soil	MSDYSIGPGVQQAMADAGDDPRSDEQFVILEEGHKVSQTFGRDAVYYWIEEDNRTNRVPFR*
Ga0126369_120766472	3300012971	Tropical Forest Soil	MTDTESTYSIGPGVQTMMASYGDVPRSDEQFIILRNGHQISQTFGRDAMYFWLQEDNATRRVPFR*
Ga0157371_101609956	3300013102	Corn Rhizosphere	MTDYSVGPGVQQAMADHGDEPRSDEQFIILVDGDKISQTFGRDATYYWMERDNAVKRSPF
Ga0157375_121656061	3300013308	Miscanthus Rhizosphere	VPDWNVGPGVAQAIADNGDEARSDEQFVLLTNGDKVSQTFARDAIYYWLERDNAVRRSPF
Ga0157377_103903012	3300014745	Miscanthus Rhizosphere	MTEYAIGPGVQNAIAENGDEPRSDEQYVILDDGHKVSQTFGRDAIYYWIQEDNAVCRSPF
Ga0132258_1001264515	3300015371	Arabidopsis Rhizosphere	VSDYVIGPGVAQAMTDSGDEPRSDEQFVILEEGHKISRTYGRDAIYTYYEEDNAVKRLPFR*
Ga0132258_103189283	3300015371	Arabidopsis Rhizosphere	MADWSIGPGVAQAIADNSDEARSDEQFIILEPGHKISQTFARDAIYWYYEEDNAVRRVPF
Ga0132258_119367103	3300015371	Arabidopsis Rhizosphere	MAEYVIGPGVAQAIADAGDEPRSDEQFIILEPGHKVSQTIGRDALYYYVEEDNRTNRLPFR*
Ga0132257_1000782472	3300015373	Arabidopsis Rhizosphere	MDVTYNIGPGVQQAMADAGDEPRSDEQFVILEPGHKVSQTFGRDAVYYYIEEDNATRRCPF*
Ga0132257_1046097182	3300015373	Arabidopsis Rhizosphere	METVYSIGPGVAAVMADAGDEPRSDEQFIILEPGHKVSQTIGRDALYYYVEEDNRTNRLPFR*
Ga0132255_1040571662	3300015374	Arabidopsis Rhizosphere	MTDFSIGPGVAQAIADHNDEPRSDEQFIILEPGEKVSQTIARDGIYYWLERDNATRRGAF
Ga0182036_106782191	3300016270	Soil	PAAQRAGADVSEFSVGPGVQQAMADHGDEPRSDEQFIILREGHKVSMTFSKGGVYYYYEEDNRTQRCPF
Ga0182041_109104013	3300016294	Soil	DQQPAAQRAGADVTEFSVGPGVQQAMADNGDEPRSDEQFIILREGHKVSMTFSTGGVYYYYEEDNRTQRCPF
Ga0210397_100010881	3300021403	Soil	MTMTEYSVGPGVQAAMDEAGDEPRSDEQFVILTEGHKVSMTYGRDAVYYWYEEDNRTNRLPFG
Ga0207688_108216312	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTEYAIGPGVQNAIAENGDEPRSDEQYVILDDGHKVSQTFGRDAIYYWIQEDNAVRRSPF
Ga0207645_101275143	3300025907	Miscanthus Rhizosphere	MTEYVIGPGVAQAISDSNDEARSDEQYVILEPGEKISQTFARDAVYYWIEKDNAVRRCPF
Ga0207693_103632633	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDGYSIGPGVQQAMVDAGDEPRSDEQFIILREGDKVSQTFGRDFIYYWMERDNAVKMSPF
Ga0207662_1000269211	3300025918	Switchgrass Rhizosphere	MADYVIGPGVAQAISDNGDEARSDEQYVILEPGEKISQTFARDAVYYWIEKDNAVRRCPF
Ga0207681_110205841	3300025923	Switchgrass Rhizosphere	MADYVIGPGVAQAIADNNDEPRSDEQFVILEPGHKVSQTFARDAIYWYYEEDNATRRVSF
Ga0207659_100251101	3300025926	Miscanthus Rhizosphere	IGPGVQNAIAENGDEPRSDEQYVILDDGHKVSQTFGRDAIYYWIQEDNAVRRSPF
Ga0207704_106198283	3300025938	Miscanthus Rhizosphere	MAEYSIGPGVQQAIADNGDEPRSDEQFIILTPGDKVSQTFARDAVYYWIERDNATRRNPF
Ga0207667_118335092	3300025949	Corn Rhizosphere	DPVSDYSVGPGVAQSIADHGDEPRSDEQYVILVDGHKVSQTFARDAIYYWIEEDNAVRRSPF
Ga0208346_10000211	3300026694	Soil	MSDYIIGPGVAQAIADAGDEPRSDEQYVILEEGHKVSQTFARDAIYYWLQEDNAVRRSPF
Ga0209466_10460033	3300027646	Tropical Forest Soil	NSDLPALKEDEVTDYNIGPGVQQAMTDAGDEPRSDEQYIILDPGHKISQTFGRDSVYWYFEEDSAVRRISFPG
Ga0209077_100003554	3300027675	Freshwater Sediment	MTDYTIGPGVQQAMIDAGDEPRSDEQYVVLEPGHKVSQTFARDAIYYWIEEDNAVRRAPF
Ga0209811_1000012324	3300027821	Surface Soil	MAEWVIGPGVLAAMQDAGDEPRSDEQFVILDEGHKVSQTFGRDAVYWWIQEDNATRRVPF
Ga0209811_100014335	3300027821	Surface Soil	MSDYSIGPGVAQAIADNGDEPRSDEQFIILREGDKVSQTFGRDFIYYWMERDNDVKMSPF
Ga0209811_100604631	3300027821	Surface Soil	MPDFNVGPGVAQAIADNGDEARSDEQFIILADGDKVSQTFARDAIYYWI
Ga0209465_100525733	3300027874	Tropical Forest Soil	MTDDQHPYSIGIGVQQAMADAGDEPRSDEQFIILLDGHQVSQTFGRDAVYYWLEEDNATKRLPFR
Ga0209465_100947832	3300027874	Tropical Forest Soil	MNTEDTYSIGPGVQQAMADHGDVPRSDEQFVILREGHQISMTFGRDSLYFWLQEDNATRRVPFR
Ga0209465_102530083	3300027874	Tropical Forest Soil	PGVLAAMQEADDEPRSDEQYVILTPGQQISQTFGRDAVYYWLEEDGAVRRVPF
Ga0209465_106105331	3300027874	Tropical Forest Soil	MDVVYNIGPGVQQAMTDANDEPRSDEQFVILEPGHKISQTFGRDAVYWYYE
Ga0318541_103297663	3300031545	Soil	VSEFSVGPGVQQAMADNGDEPRSDEQFIILREGHKVSMTFSTGGVYYYYEEDNRTQRCPF
Ga0318528_104125862	3300031561	Soil	VTEFSVGPGVQQAMADNGDEPRSDEQFIILREGHKVSMTFSTGGVYYYYEEDNRTQRCPF
Ga0306925_118693301	3300031890	Soil	QISAVMTDSGEFVVGPGVLQAMEDAGDEPRSDEQFIVMAPGHQVSQTFGRDAVYYYYEEDNRTQRLPFR
Ga0318531_105838082	3300031981	Soil	AGADVTEFSVGPGVQQAMADNGDEPRSDEQFIILREGHKVSMTFSTGGVYYYYEEDNRTQRCPF
Ga0306924_107416023	3300032076	Soil	MTDYVIGPGVQQAMADAGDEPRSDEQFMILREGHQVSQTFGRDAIYYWLEEDNAVRRCPF
Ga0306920_1002686162	3300032261	Soil	VSEFSVGPGVQQAMADHGDEPRSDEQFIILREGHKVSMTFSTGGVYYYYEEDNRTQRCPF
Ga0318519_109213531	3300033290	Soil	VTEFSVGPGVQQAMADNGDEPRSDEQFIILREGHKVSMTFSTGGVYYYYEEDN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075178

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences