Basic Information | |
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Family ID | F075305 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 119 |
Average Sequence Length | 45 residues |
Representative Sequence | DERLRAQLRTALTQLILAGLKQPEIKALINEELDELLKESRRG |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 119 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.84 % |
% of genes near scaffold ends (potentially truncated) | 98.32 % |
% of genes from short scaffolds (< 2000 bps) | 92.44 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.67 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (57.143 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (8.403 % of family members) |
Environment Ontology (ENVO) | Unclassified (52.101 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (68.067 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 52.11% β-sheet: 0.00% Coil/Unstructured: 47.89% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.67 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Natural And Restored Wetlands Sediment (Intertidal) Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Termite Nest Agricultural Soil Sugarcane Root And Bulk Soil Soil Natural And Restored Wetlands Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Host-Associated Arabidopsis Rhizosphere Miscanthus Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
soilL1_100402525 | 3300003267 | Sugarcane Root And Bulk Soil | VISQTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELQKIS* |
Ga0058689_101420042 | 3300004016 | Agave | ADKPGDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ* |
Ga0055432_100830711 | 3300004022 | Natural And Restored Wetlands | ISQKLREKPEDRHRVQLRTALTQLVLAGLKGPEIKTMINQELEELLKEPRRSS* |
Ga0063356_1038767781 | 3300004463 | Arabidopsis Thaliana Rhizosphere | TLKEKPDDRLRAQLRTALTQLILAGLKQPEIKTLINEELDELLRPIK* |
Ga0058863_107665801 | 3300004799 | Host-Associated | PEDRLRLQLRTALTQLVLAGLKQPEIKAMINQELEDLMKESRH* |
Ga0058862_120343651 | 3300004803 | Host-Associated | DRLRLQLRTALTQLVLAGLKQPEIKAMINQELEDLMKESRH* |
Ga0065715_109297321 | 3300005293 | Miscanthus Rhizosphere | ASRTLKEKPDDRLRLQLRTALTQLILAGLKQPEIKAIINQELDELLKESRN* |
Ga0070690_1001000263 | 3300005330 | Switchgrass Rhizosphere | SQTVKEKPDDRLRAQLRTALTQLILAGLKQPEIKVIINEELDELLRDSKRG* |
Ga0070666_105559431 | 3300005335 | Switchgrass Rhizosphere | QTVKDKPEDRHRIQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS* |
Ga0070660_1010588232 | 3300005339 | Corn Rhizosphere | LKDKPDDRLRAQLRTALTQLILAGLKHSEIKTLINEELEELQKQ* |
Ga0070691_101344802 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | REKPDDRLRTQLRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN* |
Ga0070669_1001209041 | 3300005353 | Switchgrass Rhizosphere | LKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS* |
Ga0070674_1016558441 | 3300005356 | Miscanthus Rhizosphere | LKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKN* |
Ga0070662_1009320692 | 3300005457 | Corn Rhizosphere | ISQKLKDKPDDRLRAQLRTALTQLILSGLKQTEIKALINEELEELQKS* |
Ga0068867_1013812131 | 3300005459 | Miscanthus Rhizosphere | GAVVISQKLKDKPDDRLRAQLRTALTQLILAGLKHTEIKALINEELEELQKN* |
Ga0070697_1008634431 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | VISQTLKEKPDDRLRAQLRTALTQLILSGLKHPEIRTLVNEELDELLKEPRRNA* |
Ga0070672_1009160021 | 3300005543 | Miscanthus Rhizosphere | RTALTQLILAGLKQPEIKTLINEELDELLKEPRRTSY* |
Ga0070695_1010344142 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | QIVKQKPEDGLRNQLRTALTQLVLAGLKPSEIKGLISEELDELLKESKRVG* |
Ga0070693_1012198652 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | KPEDRHRVQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS* |
Ga0068855_1005165212 | 3300005563 | Corn Rhizosphere | ALTQLVLAGLKAPEIKAMINQELEELLNEPRRSSPERS* |
Ga0070664_1001729463 | 3300005564 | Corn Rhizosphere | AQLRTALTQLILAGLKHSEIKALINEELEELQKQ* |
Ga0068854_1003764122 | 3300005578 | Corn Rhizosphere | VISQTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ* |
Ga0068854_1010835772 | 3300005578 | Corn Rhizosphere | RVQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS* |
Ga0068854_1018422821 | 3300005578 | Corn Rhizosphere | EKPDERLRTQLRTALTQLILAGLKQSEIKALINEELEELTKI* |
Ga0068856_1017379741 | 3300005614 | Corn Rhizosphere | KPDERLRAQLRTALTQLILAGLKQPEIEALINEELDGLLKETGRG* |
Ga0068859_1008923501 | 3300005617 | Switchgrass Rhizosphere | VISQTLTEKPDDRLRAQLRTALTQLILAGLKPPEIRTLINEELDELLKAPRPN* |
Ga0068859_1016785482 | 3300005617 | Switchgrass Rhizosphere | VVISQTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ* |
Ga0068864_1010585651 | 3300005618 | Switchgrass Rhizosphere | TLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELLKETRRGQ* |
Ga0068861_1026147561 | 3300005719 | Switchgrass Rhizosphere | DDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ* |
Ga0074472_107713371 | 3300005833 | Sediment (Intertidal) | EKPQDRLRAQLRTALTQLVLAGLKQPEIKALIQEELDELLRESRRPSGTRA* |
Ga0068851_104843622 | 3300005834 | Corn Rhizosphere | PDDRLRAQLRTALTQLLLAGLKHSEIKALINEELEELQKQ* |
Ga0068870_105143621 | 3300005840 | Miscanthus Rhizosphere | PDERLRAQLRTALTQLILAGLKQPEIKALINEELDELLRPIK* |
Ga0068858_1014154391 | 3300005842 | Switchgrass Rhizosphere | AVVISQTVQQKPEDGLRNQLRTALTQLVLSGLKPSEIKGLISEELDELLRASKKIG* |
Ga0068858_1014406802 | 3300005842 | Switchgrass Rhizosphere | ENNQEDRLRAQLRTALTQLVLAGLKQPEIKALINEELDELLRESRRA* |
Ga0068862_1014290832 | 3300005844 | Switchgrass Rhizosphere | DRLRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ* |
Ga0082029_13402331 | 3300006169 | Termite Nest | LRTALTQLILSGLKPPEIKTLINEELDELLHDTRR* |
Ga0070716_1012828881 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | DERLRAQLRTALTQLILAGLKQPEIKALINEELDELLKESRRG* |
Ga0075421_1007277111 | 3300006845 | Populus Rhizosphere | VVISQTLREKPDDRLRTQLRTALAQLILAGLKPPEIRTLINEELEELLKAPRQN* |
Ga0075431_1006824302 | 3300006847 | Populus Rhizosphere | ISQTLKEKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLKSP* |
Ga0075433_101040391 | 3300006852 | Populus Rhizosphere | KPDDRLRAQLRTALTQLILAGLKQSEIKTLINEELDELLRETR* |
Ga0075433_115341192 | 3300006852 | Populus Rhizosphere | DERLRAQLRTALTQLILAGLKPPEIKTLINEELDELLRPS* |
Ga0075433_117089321 | 3300006852 | Populus Rhizosphere | KDKPDDRLRAQLRTALTQLILAGLKQSEIKTLINEELDELLRESR* |
Ga0075425_1014680522 | 3300006854 | Populus Rhizosphere | SQTLREKPEDRLRLQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP* |
Ga0075425_1031291602 | 3300006854 | Populus Rhizosphere | VVISQTLKEKPDERLRTQLRTALTQLILAGLKQSEIKALINEELEELTKA* |
Ga0068865_1020252302 | 3300006881 | Miscanthus Rhizosphere | QLRTALTQLILAGLKQPEIKAIINEEMEELLREPRRA* |
Ga0079219_118356202 | 3300006954 | Agricultural Soil | RTALTQLILAGLKPPEIRTLINEELEELFKAPRQN* |
Ga0079219_121004372 | 3300006954 | Agricultural Soil | RLRAQLRTALTQLILAGLKQPEIKALINEELDELLKENRRGL* |
Ga0079218_100510904 | 3300007004 | Agricultural Soil | DDRLRAQLRTALTQLILAGLKQPEIRALINEELDELLKESRRNSPAT* |
Ga0105251_102426993 | 3300009011 | Switchgrass Rhizosphere | DHRLRAQLRTALTQLILAGLKHSEIKTLINEELEELQKQ* |
Ga0105245_114557122 | 3300009098 | Miscanthus Rhizosphere | ISQTLREKPEDRLRLQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP* |
Ga0075418_112553021 | 3300009100 | Populus Rhizosphere | EKPDERLRTQLRTALTQLILAGLKYPEIKTLINEELDELLKESR* |
Ga0105241_102850472 | 3300009174 | Corn Rhizosphere | RAQLRTALTQLILAGLKQPEITSLINEELDELLKESRRTG* |
Ga0105241_115064391 | 3300009174 | Corn Rhizosphere | DRLRAQLRTALTQLVLAGLKQPEIKALINEELDELLRESRRA* |
Ga0105248_103862553 | 3300009177 | Switchgrass Rhizosphere | RTQLRTALAQLILVGLKPPEIRTLINEELEELFKAPRQN* |
Ga0105248_109340332 | 3300009177 | Switchgrass Rhizosphere | QTLREKPEDRLRLQLRTALTQLILAGLKQPEIKAMIKQELEDLMKDSRP* |
Ga0105237_114504841 | 3300009545 | Corn Rhizosphere | KDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS* |
Ga0105237_126646151 | 3300009545 | Corn Rhizosphere | KDKPDDRLRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ* |
Ga0105249_134507541 | 3300009553 | Switchgrass Rhizosphere | TALTQLVLAGLKQPEIKALINEELDELLRESRRA* |
Ga0126305_110870842 | 3300010036 | Serpentine Soil | RAQLRTALTQLILAGLKPPEIRTLINEELDELLKPT* |
Ga0126315_103329632 | 3300010038 | Serpentine Soil | LRTQLRTALTQLILAGLKPPEIRTLINEELDELLKPS* |
Ga0126377_129675831 | 3300010362 | Tropical Forest Soil | QTLKEKPDERLRTQLRTALTQLILAGLKQSEIKALINEELDELLKEPRRIG* |
Ga0134128_110644002 | 3300010373 | Terrestrial Soil | VISQTLKEKPDDRLRAQIRTALTQLILAGLKPAEIRTIINEELDELRL* |
Ga0105239_102426153 | 3300010375 | Corn Rhizosphere | LKDKPDDRLRAQLRTALTQLILAGLKHTEIKTLINEELEELQKN* |
Ga0105239_130052332 | 3300010375 | Corn Rhizosphere | VISQTLREKPEDRLRVQLRTALTQLVLAGLKQPEIKVMINQELEDLMKDSRP* |
Ga0134122_125099331 | 3300010400 | Terrestrial Soil | LRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP* |
Ga0134123_100992713 | 3300010403 | Terrestrial Soil | SQTLGTNQEDRLRSQLRTALTQLVLAGLKQPEIKALINEELDDLLKESRRT* |
Ga0105246_103190581 | 3300011119 | Miscanthus Rhizosphere | AVVISQTLKDKPDDRLRAQLRTALTQLILAGLKHTEIKTLINEELEELQKN* |
Ga0126317_108476251 | 3300011332 | Soil | QLRTALTQLILAGLKQPEIKAIINEEMEELLRESRRA* |
Ga0127502_103599251 | 3300011333 | Soil | RLRTQLRTALTQLILAGLKPPEIRILINEEFEELLKAPRQN* |
Ga0137399_114704041 | 3300012203 | Vadose Zone Soil | LRSQLRTALTQLVLAGFKRPEIKALINEELESLLRDQP* |
Ga0150985_1047227212 | 3300012212 | Avena Fatua Rhizosphere | DRLRAQLRTALTQLILSGLKPPEIRTLINEELDELLKPS* |
Ga0150985_1206475211 | 3300012212 | Avena Fatua Rhizosphere | DDRLRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ* |
Ga0126375_105358152 | 3300012948 | Tropical Forest Soil | TLEEKPEDRLRAQLRTALTQLILAGLKQAEIKAVINEELDDLLNNSRNSVR* |
Ga0126375_120230831 | 3300012948 | Tropical Forest Soil | LRAQLRTALTQLVLAGLKQPEIKALINEELDELLMESRRT* |
Ga0164309_108787291 | 3300012984 | Soil | EDRLRLQLRTALTQLVLAGLKQPEIKAMINQELEDLVKDSRH* |
Ga0164305_105885212 | 3300012989 | Soil | DKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELLKENRRGQ* |
Ga0163162_134278551 | 3300013306 | Switchgrass Rhizosphere | HRIQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS* |
Ga0075324_10176842 | 3300014263 | Natural And Restored Wetlands | TQLVLAGLKQPEIRALINEELDELLNEPRRTPHHN* |
Ga0075313_12213881 | 3300014267 | Natural And Restored Wetlands | DDRLRTQLRTALTQLILAGLKPPEIRTLINEELDELFKAPRQN* |
Ga0163163_122284981 | 3300014325 | Switchgrass Rhizosphere | ISQKLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS* |
Ga0182007_100861861 | 3300015262 | Rhizosphere | LRAQLRTALTQLTLSGLKQSEIKALINEELDELTRQKSA* |
Ga0132256_1013795701 | 3300015372 | Arabidopsis Rhizosphere | TLKEKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELVKEKPRTNTEGHR* |
Ga0132257_1000568295 | 3300015373 | Arabidopsis Rhizosphere | DDRLRAQLRTALTQLILAGLKQPEIKALINAELDDLLKDAKRAG* |
Ga0132257_1028715101 | 3300015373 | Arabidopsis Rhizosphere | DKPEDRHRIQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS* |
Ga0184628_105078201 | 3300018083 | Groundwater Sediment | REKPDDRLRAQLRTALTQLILAGLKQPEIKAIINEEMEELLRESRRA |
Ga0190265_133045131 | 3300018422 | Soil | KPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLKVP |
Ga0213902_1064461 | 3300021290 | Soil | VISQTLKDKPDDRLRAQLRTALTQLILAGLKPPEIKSLINEELDELLKESRR |
Ga0210113_11112542 | 3300025796 | Natural And Restored Wetlands | TLKEKPDDRLRTQLRTALTQLILAGLKPPEIRTLINEELDELLKEPRRIL |
Ga0207680_100912123 | 3300025903 | Switchgrass Rhizosphere | LRAQLRTALTQLILAGLKQPEIKVMINEELDELLRDSKRG |
Ga0207680_101865901 | 3300025903 | Switchgrass Rhizosphere | QTVQQKPEDGLRNQLRTALTQLVLSGLKPSEIKGLISEELDELLRASKKIG |
Ga0207660_104013121 | 3300025917 | Corn Rhizosphere | RTALTQLILAGLKQPEIRTLINEELEELFKAPRQN |
Ga0207649_115398032 | 3300025920 | Corn Rhizosphere | VVISQKLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKQ |
Ga0207650_119023392 | 3300025925 | Switchgrass Rhizosphere | AVVVSQTLSEKPDDRLRVQLRTALAQLVLAGLKPSEIKVIINQEMEELLRRSS |
Ga0207690_107786252 | 3300025932 | Corn Rhizosphere | EDRLRLQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP |
Ga0207706_104680572 | 3300025933 | Corn Rhizosphere | QQKPEDGLRNQLRTALTQLVLSGLKPSEIKGLISEALDELLRASKKIG |
Ga0207691_100097971 | 3300025940 | Miscanthus Rhizosphere | LRAQLRTALTQLILAGLKQPEIKVMINEELDELLRDSKRA |
Ga0207711_106466793 | 3300025941 | Switchgrass Rhizosphere | RLRTQLRTALTQLILAGLKPPEIRTLINEELEELFKAPRQN |
Ga0207640_109098712 | 3300025981 | Corn Rhizosphere | TVKNKPEDRHRVQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS |
Ga0207640_110851252 | 3300025981 | Corn Rhizosphere | EKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLNEPRR |
Ga0207703_103689622 | 3300026035 | Switchgrass Rhizosphere | RAQLRTALTQLILAGLKHSEIKALINEELEELQKQ |
Ga0207639_111052172 | 3300026041 | Corn Rhizosphere | SQTLREKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLNEPRR |
Ga0207708_108897132 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | VVISQKLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS |
Ga0207648_117431531 | 3300026089 | Miscanthus Rhizosphere | KQKPEDGLRNQLRTALTQLVLAGLKPSEIKGLISEELDELLKESKRVG |
Ga0207674_120407021 | 3300026116 | Corn Rhizosphere | EDRLRVQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP |
Ga0256867_100249191 | 3300026535 | Soil | TALTQLILAGLKHPEIKTLINEELDELLKEPRRSLQA |
Ga0209486_106695931 | 3300027886 | Agricultural Soil | LTQLILAGLKQPEIRALINEELDELLKESRRNSPAT |
Ga0209382_108945951 | 3300027909 | Populus Rhizosphere | ISQTLKEKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLKSP |
Ga0268265_118369551 | 3300028380 | Switchgrass Rhizosphere | RLRAQLRTALTQLILAGLKQTEIKALINEELEELQKN |
Ga0307405_106832332 | 3300031731 | Rhizosphere | KPDDRLRAQLRTALTQLILAGLKQPEIKTLINEELDELLRPMK |
Ga0310904_113595651 | 3300031854 | Soil | ISQTVKEKPDDRLRAQLRTALTQLILAGLKQPEIKVMINEELDELLRDSKRG |
Ga0307406_103588461 | 3300031901 | Rhizosphere | AQLRTALTQLILSGLKPPEIKTLINEELDELLNEPRR |
Ga0310901_101137121 | 3300031940 | Soil | LGTNQEDRLRSQLRTALTQLVLAGLKQPEIKTLINEELDDLLKESRRT |
Ga0310897_100523111 | 3300032003 | Soil | TLREKPDDRLRTQLRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN |
Ga0310906_100444351 | 3300032013 | Soil | SQLRTALTQLVLAGLKQPEIKTLINEELDDLLKESRRT |
Ga0310810_104345122 | 3300033412 | Soil | VVISQTLKDKPDERLRAQLRTALTQLTLSGLKQSEIKALINEELDELTRQKSA |
Ga0314781_086034_13_135 | 3300034660 | Soil | LRAQLRTALTQLILAGLKPPEIRTLINEELEELFKAPRQI |
Ga0314782_011314_1253_1369 | 3300034661 | Soil | RAQLRTALTQLILAGLKQSEIKALINEELDELIRQKSA |
Ga0314782_195191_3_140 | 3300034661 | Soil | PDDRLRAQLRTALTQLILAGLKQPEIKSLINEELDELLKESRRTG |
Ga0314793_094010_3_140 | 3300034668 | Soil | KPDDRLRTQLRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN |
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