NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F075305

Metagenome / Metatranscriptome Family F075305

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075305
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 45 residues
Representative Sequence DERLRAQLRTALTQLILAGLKQPEIKALINEELDELLKESRRG
Number of Associated Samples 101
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.84 %
% of genes near scaffold ends (potentially truncated) 98.32 %
% of genes from short scaffolds (< 2000 bps) 92.44 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.143 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere
(8.403 % of family members)
Environment Ontology (ENVO) Unclassified
(52.101 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(68.067 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.11%    β-sheet: 0.00%    Coil/Unstructured: 47.89%
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Variant

510152025303540DERLRAQLRTALTQLILAGLKQPEIKALINEELDELLKESRRGSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
57.1%42.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Soil
Natural And Restored Wetlands
Sediment (Intertidal)
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Serpentine Soil
Termite Nest
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Natural And Restored Wetlands
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Host-Associated
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Agave
5.0%3.4%6.7%5.0%8.4%7.6%3.4%7.6%4.2%5.0%4.2%5.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
soilL1_1004025253300003267Sugarcane Root And Bulk SoilVISQTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELQKIS*
Ga0058689_1014200423300004016AgaveADKPGDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ*
Ga0055432_1008307113300004022Natural And Restored WetlandsISQKLREKPEDRHRVQLRTALTQLVLAGLKGPEIKTMINQELEELLKEPRRSS*
Ga0063356_10387677813300004463Arabidopsis Thaliana RhizosphereTLKEKPDDRLRAQLRTALTQLILAGLKQPEIKTLINEELDELLRPIK*
Ga0058863_1076658013300004799Host-AssociatedPEDRLRLQLRTALTQLVLAGLKQPEIKAMINQELEDLMKESRH*
Ga0058862_1203436513300004803Host-AssociatedDRLRLQLRTALTQLVLAGLKQPEIKAMINQELEDLMKESRH*
Ga0065715_1092973213300005293Miscanthus RhizosphereASRTLKEKPDDRLRLQLRTALTQLILAGLKQPEIKAIINQELDELLKESRN*
Ga0070690_10010002633300005330Switchgrass RhizosphereSQTVKEKPDDRLRAQLRTALTQLILAGLKQPEIKVIINEELDELLRDSKRG*
Ga0070666_1055594313300005335Switchgrass RhizosphereQTVKDKPEDRHRIQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS*
Ga0070660_10105882323300005339Corn RhizosphereLKDKPDDRLRAQLRTALTQLILAGLKHSEIKTLINEELEELQKQ*
Ga0070691_1013448023300005341Corn, Switchgrass And Miscanthus RhizosphereREKPDDRLRTQLRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN*
Ga0070669_10012090413300005353Switchgrass RhizosphereLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS*
Ga0070674_10165584413300005356Miscanthus RhizosphereLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKN*
Ga0070662_10093206923300005457Corn RhizosphereISQKLKDKPDDRLRAQLRTALTQLILSGLKQTEIKALINEELEELQKS*
Ga0068867_10138121313300005459Miscanthus RhizosphereGAVVISQKLKDKPDDRLRAQLRTALTQLILAGLKHTEIKALINEELEELQKN*
Ga0070697_10086344313300005536Corn, Switchgrass And Miscanthus RhizosphereVISQTLKEKPDDRLRAQLRTALTQLILSGLKHPEIRTLVNEELDELLKEPRRNA*
Ga0070672_10091600213300005543Miscanthus RhizosphereRTALTQLILAGLKQPEIKTLINEELDELLKEPRRTSY*
Ga0070695_10103441423300005545Corn, Switchgrass And Miscanthus RhizosphereQIVKQKPEDGLRNQLRTALTQLVLAGLKPSEIKGLISEELDELLKESKRVG*
Ga0070693_10121986523300005547Corn, Switchgrass And Miscanthus RhizosphereKPEDRHRVQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS*
Ga0068855_10051652123300005563Corn RhizosphereALTQLVLAGLKAPEIKAMINQELEELLNEPRRSSPERS*
Ga0070664_10017294633300005564Corn RhizosphereAQLRTALTQLILAGLKHSEIKALINEELEELQKQ*
Ga0068854_10037641223300005578Corn RhizosphereVISQTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ*
Ga0068854_10108357723300005578Corn RhizosphereRVQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS*
Ga0068854_10184228213300005578Corn RhizosphereEKPDERLRTQLRTALTQLILAGLKQSEIKALINEELEELTKI*
Ga0068856_10173797413300005614Corn RhizosphereKPDERLRAQLRTALTQLILAGLKQPEIEALINEELDGLLKETGRG*
Ga0068859_10089235013300005617Switchgrass RhizosphereVISQTLTEKPDDRLRAQLRTALTQLILAGLKPPEIRTLINEELDELLKAPRPN*
Ga0068859_10167854823300005617Switchgrass RhizosphereVVISQTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ*
Ga0068864_10105856513300005618Switchgrass RhizosphereTLKDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELLKETRRGQ*
Ga0068861_10261475613300005719Switchgrass RhizosphereDDRLRAQLRTALTQLILAGLKQPEIKALINEELEELQKQ*
Ga0074472_1077133713300005833Sediment (Intertidal)EKPQDRLRAQLRTALTQLVLAGLKQPEIKALIQEELDELLRESRRPSGTRA*
Ga0068851_1048436223300005834Corn RhizospherePDDRLRAQLRTALTQLLLAGLKHSEIKALINEELEELQKQ*
Ga0068870_1051436213300005840Miscanthus RhizospherePDERLRAQLRTALTQLILAGLKQPEIKALINEELDELLRPIK*
Ga0068858_10141543913300005842Switchgrass RhizosphereAVVISQTVQQKPEDGLRNQLRTALTQLVLSGLKPSEIKGLISEELDELLRASKKIG*
Ga0068858_10144068023300005842Switchgrass RhizosphereENNQEDRLRAQLRTALTQLVLAGLKQPEIKALINEELDELLRESRRA*
Ga0068862_10142908323300005844Switchgrass RhizosphereDRLRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ*
Ga0082029_134023313300006169Termite NestLRTALTQLILSGLKPPEIKTLINEELDELLHDTRR*
Ga0070716_10128288813300006173Corn, Switchgrass And Miscanthus RhizosphereDERLRAQLRTALTQLILAGLKQPEIKALINEELDELLKESRRG*
Ga0075421_10072771113300006845Populus RhizosphereVVISQTLREKPDDRLRTQLRTALAQLILAGLKPPEIRTLINEELEELLKAPRQN*
Ga0075431_10068243023300006847Populus RhizosphereISQTLKEKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLKSP*
Ga0075433_1010403913300006852Populus RhizosphereKPDDRLRAQLRTALTQLILAGLKQSEIKTLINEELDELLRETR*
Ga0075433_1153411923300006852Populus RhizosphereDERLRAQLRTALTQLILAGLKPPEIKTLINEELDELLRPS*
Ga0075433_1170893213300006852Populus RhizosphereKDKPDDRLRAQLRTALTQLILAGLKQSEIKTLINEELDELLRESR*
Ga0075425_10146805223300006854Populus RhizosphereSQTLREKPEDRLRLQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP*
Ga0075425_10312916023300006854Populus RhizosphereVVISQTLKEKPDERLRTQLRTALTQLILAGLKQSEIKALINEELEELTKA*
Ga0068865_10202523023300006881Miscanthus RhizosphereQLRTALTQLILAGLKQPEIKAIINEEMEELLREPRRA*
Ga0079219_1183562023300006954Agricultural SoilRTALTQLILAGLKPPEIRTLINEELEELFKAPRQN*
Ga0079219_1210043723300006954Agricultural SoilRLRAQLRTALTQLILAGLKQPEIKALINEELDELLKENRRGL*
Ga0079218_1005109043300007004Agricultural SoilDDRLRAQLRTALTQLILAGLKQPEIRALINEELDELLKESRRNSPAT*
Ga0105251_1024269933300009011Switchgrass RhizosphereDHRLRAQLRTALTQLILAGLKHSEIKTLINEELEELQKQ*
Ga0105245_1145571223300009098Miscanthus RhizosphereISQTLREKPEDRLRLQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP*
Ga0075418_1125530213300009100Populus RhizosphereEKPDERLRTQLRTALTQLILAGLKYPEIKTLINEELDELLKESR*
Ga0105241_1028504723300009174Corn RhizosphereRAQLRTALTQLILAGLKQPEITSLINEELDELLKESRRTG*
Ga0105241_1150643913300009174Corn RhizosphereDRLRAQLRTALTQLVLAGLKQPEIKALINEELDELLRESRRA*
Ga0105248_1038625533300009177Switchgrass RhizosphereRTQLRTALAQLILVGLKPPEIRTLINEELEELFKAPRQN*
Ga0105248_1093403323300009177Switchgrass RhizosphereQTLREKPEDRLRLQLRTALTQLILAGLKQPEIKAMIKQELEDLMKDSRP*
Ga0105237_1145048413300009545Corn RhizosphereKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS*
Ga0105237_1266461513300009545Corn RhizosphereKDKPDDRLRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ*
Ga0105249_1345075413300009553Switchgrass RhizosphereTALTQLVLAGLKQPEIKALINEELDELLRESRRA*
Ga0126305_1108708423300010036Serpentine SoilRAQLRTALTQLILAGLKPPEIRTLINEELDELLKPT*
Ga0126315_1033296323300010038Serpentine SoilLRTQLRTALTQLILAGLKPPEIRTLINEELDELLKPS*
Ga0126377_1296758313300010362Tropical Forest SoilQTLKEKPDERLRTQLRTALTQLILAGLKQSEIKALINEELDELLKEPRRIG*
Ga0134128_1106440023300010373Terrestrial SoilVISQTLKEKPDDRLRAQIRTALTQLILAGLKPAEIRTIINEELDELRL*
Ga0105239_1024261533300010375Corn RhizosphereLKDKPDDRLRAQLRTALTQLILAGLKHTEIKTLINEELEELQKN*
Ga0105239_1300523323300010375Corn RhizosphereVISQTLREKPEDRLRVQLRTALTQLVLAGLKQPEIKVMINQELEDLMKDSRP*
Ga0134122_1250993313300010400Terrestrial SoilLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP*
Ga0134123_1009927133300010403Terrestrial SoilSQTLGTNQEDRLRSQLRTALTQLVLAGLKQPEIKALINEELDDLLKESRRT*
Ga0105246_1031905813300011119Miscanthus RhizosphereAVVISQTLKDKPDDRLRAQLRTALTQLILAGLKHTEIKTLINEELEELQKN*
Ga0126317_1084762513300011332SoilQLRTALTQLILAGLKQPEIKAIINEEMEELLRESRRA*
Ga0127502_1035992513300011333SoilRLRTQLRTALTQLILAGLKPPEIRILINEEFEELLKAPRQN*
Ga0137399_1147040413300012203Vadose Zone SoilLRSQLRTALTQLVLAGFKRPEIKALINEELESLLRDQP*
Ga0150985_10472272123300012212Avena Fatua RhizosphereDRLRAQLRTALTQLILSGLKPPEIRTLINEELDELLKPS*
Ga0150985_12064752113300012212Avena Fatua RhizosphereDDRLRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ*
Ga0126375_1053581523300012948Tropical Forest SoilTLEEKPEDRLRAQLRTALTQLILAGLKQAEIKAVINEELDDLLNNSRNSVR*
Ga0126375_1202308313300012948Tropical Forest SoilLRAQLRTALTQLVLAGLKQPEIKALINEELDELLMESRRT*
Ga0164309_1087872913300012984SoilEDRLRLQLRTALTQLVLAGLKQPEIKAMINQELEDLVKDSRH*
Ga0164305_1058852123300012989SoilDKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELLKENRRGQ*
Ga0163162_1342785513300013306Switchgrass RhizosphereHRIQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS*
Ga0075324_101768423300014263Natural And Restored WetlandsTQLVLAGLKQPEIRALINEELDELLNEPRRTPHHN*
Ga0075313_122138813300014267Natural And Restored WetlandsDDRLRTQLRTALTQLILAGLKPPEIRTLINEELDELFKAPRQN*
Ga0163163_1222849813300014325Switchgrass RhizosphereISQKLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS*
Ga0182007_1008618613300015262RhizosphereLRAQLRTALTQLTLSGLKQSEIKALINEELDELTRQKSA*
Ga0132256_10137957013300015372Arabidopsis RhizosphereTLKEKPDDRLRAQLRTALTQLILAGLKQPEIKALINEELDELVKEKPRTNTEGHR*
Ga0132257_10005682953300015373Arabidopsis RhizosphereDDRLRAQLRTALTQLILAGLKQPEIKALINAELDDLLKDAKRAG*
Ga0132257_10287151013300015373Arabidopsis RhizosphereDKPEDRHRIQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS*
Ga0184628_1050782013300018083Groundwater SedimentREKPDDRLRAQLRTALTQLILAGLKQPEIKAIINEEMEELLRESRRA
Ga0190265_1330451313300018422SoilKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLKVP
Ga0213902_10644613300021290SoilVISQTLKDKPDDRLRAQLRTALTQLILAGLKPPEIKSLINEELDELLKESRR
Ga0210113_111125423300025796Natural And Restored WetlandsTLKEKPDDRLRTQLRTALTQLILAGLKPPEIRTLINEELDELLKEPRRIL
Ga0207680_1009121233300025903Switchgrass RhizosphereLRAQLRTALTQLILAGLKQPEIKVMINEELDELLRDSKRG
Ga0207680_1018659013300025903Switchgrass RhizosphereQTVQQKPEDGLRNQLRTALTQLVLSGLKPSEIKGLISEELDELLRASKKIG
Ga0207660_1040131213300025917Corn RhizosphereRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN
Ga0207649_1153980323300025920Corn RhizosphereVVISQKLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKQ
Ga0207650_1190233923300025925Switchgrass RhizosphereAVVVSQTLSEKPDDRLRVQLRTALAQLVLAGLKPSEIKVIINQEMEELLRRSS
Ga0207690_1077862523300025932Corn RhizosphereEDRLRLQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP
Ga0207706_1046805723300025933Corn RhizosphereQQKPEDGLRNQLRTALTQLVLSGLKPSEIKGLISEALDELLRASKKIG
Ga0207691_1000979713300025940Miscanthus RhizosphereLRAQLRTALTQLILAGLKQPEIKVMINEELDELLRDSKRA
Ga0207711_1064667933300025941Switchgrass RhizosphereRLRTQLRTALTQLILAGLKPPEIRTLINEELEELFKAPRQN
Ga0207640_1090987123300025981Corn RhizosphereTVKNKPEDRHRVQLRTALTQLVLAGLKAPEIKAMINQELEELLKEPRRSSPERS
Ga0207640_1108512523300025981Corn RhizosphereEKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLNEPRR
Ga0207703_1036896223300026035Switchgrass RhizosphereRAQLRTALTQLILAGLKHSEIKALINEELEELQKQ
Ga0207639_1110521723300026041Corn RhizosphereSQTLREKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLNEPRR
Ga0207708_1088971323300026075Corn, Switchgrass And Miscanthus RhizosphereVVISQKLKDKPDDRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKS
Ga0207648_1174315313300026089Miscanthus RhizosphereKQKPEDGLRNQLRTALTQLVLAGLKPSEIKGLISEELDELLKESKRVG
Ga0207674_1204070213300026116Corn RhizosphereEDRLRVQLRTALTQLILAGLKQPEIKAMINQELEDLMKDSRP
Ga0256867_1002491913300026535SoilTALTQLILAGLKHPEIKTLINEELDELLKEPRRSLQA
Ga0209486_1066959313300027886Agricultural SoilLTQLILAGLKQPEIRALINEELDELLKESRRNSPAT
Ga0209382_1089459513300027909Populus RhizosphereISQTLKEKPDDRLRAQLRTALTQLILSGLKPPEIKTLINEELDELLKSP
Ga0268265_1183695513300028380Switchgrass RhizosphereRLRAQLRTALTQLILAGLKQTEIKALINEELEELQKN
Ga0307405_1068323323300031731RhizosphereKPDDRLRAQLRTALTQLILAGLKQPEIKTLINEELDELLRPMK
Ga0310904_1135956513300031854SoilISQTVKEKPDDRLRAQLRTALTQLILAGLKQPEIKVMINEELDELLRDSKRG
Ga0307406_1035884613300031901RhizosphereAQLRTALTQLILSGLKPPEIKTLINEELDELLNEPRR
Ga0310901_1011371213300031940SoilLGTNQEDRLRSQLRTALTQLVLAGLKQPEIKTLINEELDDLLKESRRT
Ga0310897_1005231113300032003SoilTLREKPDDRLRTQLRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN
Ga0310906_1004443513300032013SoilSQLRTALTQLVLAGLKQPEIKTLINEELDDLLKESRRT
Ga0310810_1043451223300033412SoilVVISQTLKDKPDERLRAQLRTALTQLTLSGLKQSEIKALINEELDELTRQKSA
Ga0314781_086034_13_1353300034660SoilLRAQLRTALTQLILAGLKPPEIRTLINEELEELFKAPRQI
Ga0314782_011314_1253_13693300034661SoilRAQLRTALTQLILAGLKQSEIKALINEELDELIRQKSA
Ga0314782_195191_3_1403300034661SoilPDDRLRAQLRTALTQLILAGLKQPEIKSLINEELDELLKESRRTG
Ga0314793_094010_3_1403300034668SoilKPDDRLRTQLRTALTQLILAGLKQPEIRTLINEELEELFKAPRQN


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