NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F075421

Metagenome Family F075421

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075421
Family Type Metagenome
Number of Sequences 119
Average Sequence Length 45 residues
Representative Sequence MITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHSPKPQ
Number of Associated Samples 81
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Viruses
% of genes with valid RBS motifs 62.18 %
% of genes near scaffold ends (potentially truncated) 35.29 %
% of genes from short scaffolds (< 2000 bps) 71.43 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Duplodnaviria (60.504 % of family members)
NCBI Taxonomy ID 2731341
Taxonomy All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(45.378 % of family members)
Environment Ontology (ENVO) Unclassified
(80.672 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.555 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 4.11%    β-sheet: 0.00%    Coil/Unstructured: 95.89%
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Variant

51015202530354045MITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHSPKPQSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
77.3%22.7%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Marine
Surface Seawater
Deep Subsurface
Seawater
Aqueous
Seawater
Marine Surface Water
Sackhole Brine
Freshwater To Marine Saline Gradient
Seawater
Salt Marsh
Marine
Marine
Estuarine
Pelagic Marine
Seawater
Marine
Seawater
Pond Water
Sediment
45.4%6.7%4.2%3.4%4.2%3.4%4.2%11.8%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_10000263183300000101MarineMITSINFGGLGKPAPKPKPLIAPLPEEYKQPQPNLTIKNRPPKS*
DelMOSum2010_1012714823300000101MarineMITGINFGGLGKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI*
JGI24003J15210_1000817263300001460MarineMIAAINFGGLSKPAPKPKPLIAPLPEEYKQPETNQTIKNHTPKQQ*
JGI24003J15210_1001408333300001460MarineVITGIRFGGLGKPAPKPKPMIAPLPEEYKQPKPNQVIKNYPPKSI*
JGI24003J15210_1001524123300001460MarineMITAINFGGLSKPAPKPKPIIAPLPEEYKQPSPNQTIKNHSPKPQ*
JGI24003J15210_1001836643300001460MarineMITTINFGGLSKPAPKPKALVAPLPDEYKQPPPIQTIKNHYPKPQ*
JGI24003J15210_1002009333300001460MarineMITTINFGGLGKPAPKPKALVAPLPDEYKQSPPIQTIKNHYPKPQ*
JGI24003J15210_1003116023300001460MarineMITSINFGGLGKPAPKPKPLVAPLPEEYKQPQPNLTIKNRPPKS*
JGI24003J15210_1005723433300001460MarineLITGIRFGGLGKPQPKPKPIIAPLPEEYKQPKPNLIIKNHTPKPI*
JGI24003J15210_1006051823300001460MarineLITAINFGGLSKPQPKPKPKMAPLPQEYEQPKPNLTIKNRPQKYI*
JGI24003J15210_1007078523300001460MarineMITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ*
JGI24003J15210_1008705613300001460MarineGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHNPKPQ*
JGI24003J15210_1011311413300001460MarineMISSVNFGGLSTTSSKSQPLVAPLPEEYKQPAPNTTIKNPAPKPQ*
JGI24004J15324_1003869033300001472MarineMITAINFGGLSKPAPKPKLLIAPLPEEYKQPSPDQTIKNHSPKPQ*
JGI24005J15628_1002565143300001589MarineTIRRWCCTMITAINFGGLSKPAPKPKLLIAPLPEEYKQPSPDQTIKNHSPKPQ*
JGI25127J35165_101963923300002482MarineMIIAVNFGGVSKPASPPTTLIAPLPQEYMQPKPNTTIKNPAPKPQ*
Ga0073579_132404133300005239MarineMITAINFGGLSKPTPKPQPLVAPLPEEYKQPAPNQTIKNHSPKPQ*
Ga0073579_138238023300005239MarineMITGINFGGLGKPTPKTKPLIAPVPLEYAKPQTLQVIKNHTPKPQ*
Ga0078893_1109787623300005837Marine Surface WaterVITAINFNGIGKPLPKSKPLVAPLPEEYKQPQPNLTIKNHSPKPQ*
Ga0070743_1022159323300005941EstuarineMITAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHNPKPQ*
Ga0075462_1001556833300006027AqueousMITGIHFGGLGKPQPKPKPKIATLPEEYKRPTPNQTIKNHSPKPQ*
Ga0098048_100786823300006752MarineMITGINFGGLGKPQPKPKPRIAPLPEEYKQPKPNLTIKNRPQKSI*
Ga0070749_1052258523300006802AqueousMITGINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ*
Ga0070754_1010366323300006810AqueousGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ*
Ga0070754_1015478023300006810AqueousMITAINFGGLSKPTPKPQPLVAPLPEEYKQPTSNQTIKNHCPKPQ*
Ga0070745_128247713300007344AqueousRRHCTMITAINFGGLSKPTPKPQPLVAPLPEEYKQPTSNQTIKNHCPKPQ*
Ga0070751_125279523300007640AqueousGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ*
Ga0115371_1126565343300008470SedimentLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPPKVQVIKNHTPKPL*
Ga0102960_110033523300009000Pond WaterMITGINFGGLGKPKPKPEPKIAPLPEEYKQPTSNQTIKNHCPKPQ*
Ga0114918_1005895443300009149Deep SubsurfaceVITGINFGGLGKPQPKPKPKIAPLPIEYQQPKPNQTIKNHPPKSI*
Ga0114995_1045508523300009172MarineMITGINFGGLEKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI*
Ga0114995_1054140123300009172MarineLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL*
Ga0114998_1011610623300009422MarineLRRRYCNLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL*
Ga0114998_1011637913300009422MarineRWCCDMITGINFGGLGKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI*
Ga0114997_1015939433300009425MarineMITGIVFGGLGKPASKPKPLLAPLPAEYQQPKPNLTIKNHTPKPL*
Ga0115545_132584923300009433Pelagic MarineMITGINFGGLEKPKPKPTPKVAPLPAEYLQPKSNNKIKNRSPKSI*
Ga0115003_1057233823300009512MarineMITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL*
Ga0115003_1065533423300009512MarineGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL*
Ga0115000_1081836013300009705MarineNMITGINFGGLEKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI*
Ga0115001_1031763013300009785MarineKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL*
Ga0115001_1099927423300009785MarineMITGINFGGLGKPQPKPKPKIAPLPQEYQQPKPNL
Ga0160423_1069236123300012920Surface SeawaterMIIAVNFGGIHKPAPKPAPLVAPLPEEYKQEPANLTIKNPYPKPQ*
Ga0180120_1001329333300017697Freshwater To Marine Saline GradientMITGINFSGLEKPKPKPKPTPKVAPLPAEYLQPKSNNKIKNRSPKSI
Ga0181377_101369253300017706MarineMITAINFGGLSKPAPKPQPLVAPLPEEYKQTPSNQTIKNHSPKPQ
Ga0181398_115200723300017725SeawaterGKTLRRWCCDMITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0181401_100606563300017727SeawaterMITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCP
Ga0181418_114943323300017740SeawaterMITSINFGGLGKPAPKPKPLVAPLPEEYKQPTPNTTIKN
Ga0181421_102233913300017741SeawaterTRRRHCRMITAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHSPKPQ
Ga0181421_103340233300017741SeawaterTRRRHCRMITAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHNPKPQ
Ga0181393_101696053300017748SeawaterMITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHSPKPQ
Ga0187219_115238513300017751SeawaterYRRRHCRMITAINFGGLSKPAPKPVPLVAPLPEEYKQTSSNQTIKNHNPKPQ
Ga0181400_100569343300017752SeawaterMITAINFGGLGKPKPKTKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0181407_116573423300017753SeawaterMITAINFGGLGKPQPKPKPLVAPLPQEYKQTSSNQVIKNHRPKPQ
Ga0181410_115009323300017763SeawaterNFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0181423_107905833300017781SeawaterMITAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHCPKPQ
Ga0181380_126186013300017782SeawaterINFGGLSKPAPKPQPLVAPLPQEYKQTSSNQTIKNHSPKPQ
Ga0181379_109539823300017783SeawaterMITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNHTIKNHCPKPQ
Ga0181424_1040782813300017786SeawaterTAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHSPKPQ
Ga0181607_1006695123300017950Salt MarshMITGINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0181600_1011218323300018036Salt MarshMITGINFGGLEKPKPKPTPKVAPLPAEYLQPKSNNKIKNRSPKSI
Ga0206125_1006008933300020165SeawaterMITAINFGGLSKPAPKPQPLIAPLPEEYKQSPSNQTIKNPAPKPQ
Ga0206125_1023639123300020165SeawaterMITAINFGGLSKPAPKPAPLVAPLPAEYNQPRLKQTVKNLKPKPIN
Ga0206124_1033924613300020175SeawaterTTRRRHCRMITAINFGGLSKPAPKPQPLIAPLPEEYKQSPSNQTIKNPAPKPQ
Ga0211678_1015019423300020388MarineMITSINFGGLGKPAPKPKPLVAPLPEEYKQPQPNLTIKNRPPKS
Ga0211695_1014983313300020441MarineAINFGGLSKPAPKPATLIAPLPAEYKQPTPNTTIKNPAPKPQ
Ga0211676_1009264123300020463MarineMITAINFGGLSKPAPKPLPLVAPQPVEYTQPAPNQTIKNHSPKPQ
Ga0211577_1004605323300020469MarineMITAINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0206126_1023927523300020595SeawaterLGKPQTKPKPKIAPLPEEYKQPKPNLTIKNRPHKSI
Ga0206677_1002717813300021085SeawaterMITAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHNPKPQ
Ga0206682_1000043163300021185SeawaterMITAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHSPKPQ
Ga0206123_1037589323300021365SeawaterMITAINFGGLSKPAPKPQPLVAPLPQEYKQTSSNQTIKNHSPKPQ
Ga0213869_1000002863300021375SeawaterMITAINFGGLSKPTPKPQPLVAPLPEEYKQPAPNQTIKNHSPKPQ
Ga0213869_1015454723300021375SeawaterMITGINFGGLEKPKPKPKPTPKVAPLPAEYLQPKSNNKIKNRSPKSI
Ga0196899_106443723300022187AqueousMITGIHFGGLGKPQPKPKPKIATLPEEYKRPTPNQTIKNHSPKPQ
Ga0196899_120545623300022187AqueousMITAINFGGLSKPTPKPQPLVAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0255752_1040844423300022929Salt MarshMITGINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIK
Ga0255777_1053703113300023175Salt MarshSNMITGINFGGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
(restricted) Ga0233412_1002489233300023210SeawaterMITAINFGGLSKPAPKPQPLVAPLPEEYKQTSSNQTIKNHNPKPQ
Ga0255763_109059213300023273Salt MarshGLGKPKPKPKPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0233402_106851523300024229SeawaterMITAINFGGLSKPAPKPVPLVAPLPEEYKQTSSNQTIKNHSPKPQ
Ga0210003_103669623300024262Deep SubsurfaceVITGINFGGLGKPQPKPKPKIAPLPIEYQQPKPNQTIKNHPPKSI
Ga0207905_100021743300025048MarineLITGIRFGGLGKPQPKPKPIIAPLPEEYKQPKPNLIIKNHTPKPI
Ga0208667_105306713300025070MarineMITGINFGGLGKPQPKPKPRIAPLPEEYKQPKPNLTIKNRPQKSI
Ga0209535_101278223300025120MarineMISSVNFGGLSTTSSKSQPLVAPLPEEYKQPAPNTTIKNPAPKPQ
Ga0209535_101339543300025120MarineMIAAINFGGLSKPAPKPKPLIAPLPEEYKQPETNQTIKNHTPKQQ
Ga0209535_102558733300025120MarineMITTINFGGLGKPAPKPKALVAPLPDEYKQSPPIQTIKNHYPKPQ
Ga0209535_102718643300025120MarineVITGIRFGGLGKPAPKPKPMIAPLPEEYKQPKPNQVIKNYPPKSI
Ga0209535_102736923300025120MarineMITTINFGGLSKPAPKPKALVAPLPDEYKQPPPIQTIKNHYPKPQ
Ga0209535_102934133300025120MarineVITGINFGGLGKPQPKPKPKIAPLPQEYQQPKPNLTIKNHPPKSI
Ga0209535_103966623300025120MarineMITAINFGGLSKPAPKPKLLIAPLPEEYKQPSPDQTIKNHSPKPQ
Ga0209535_105124733300025120MarineMITAINFGGLSKPAPKPKPIIAPLPEEYKQPSPNQTIKNHSPKPQ
Ga0209535_105715223300025120MarineLITAINFGGLSKPQPKPKPKMAPLPQEYEQPKPNLTIKNRPQKYI
Ga0209535_113206313300025120MarineLSKPAPKPQPLVAPLPQEYKQTSSNQVIKNHRPKPQ
Ga0209535_114105723300025120MarineMITGINFRGLGKPQPKPRPKIAPLPQEYQQPKPNLTIKNRPQKSI
Ga0209348_102382813300025127MarineMIIAVNFGGVSKPASPPTTLIAPLPQEYMQPKPNTTIKNLAPKPQ
Ga0209336_1000419343300025137MarineMITGINFGGLGKPQPKPKPKIAPLPEEYKQPKPNLTIKNRPQKSI
Ga0209634_108232523300025138MarineMITSINFGGLSKPAPKPKPIVAPLPEEYKQPSPNLTIKNHIPKPL
Ga0209634_133004523300025138MarineMITAINFGGLSKPAPKPAPLVVPLPVEYNQPRLNQTVKNLKPKPIN
Ga0209337_130545023300025168MarineGINFGGLGKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI
Ga0209307_124508723300025832Pelagic MarineSKPATKPKPLVAPLPAEYKQPVKLITIKNTSPKPQ
Ga0209932_109507013300026183Pond WaterGINFGGLGKPKPKPEPKIAPLPEEYKQPTSNQTIKNHCPKPQ
Ga0209710_107847723300027687MarineMITGINFGGLGKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI
Ga0209710_120212313300027687MarineTLRRRYCNLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0209710_129281823300027687MarineMITGINFGGLEKPQPKPKPKIAPLPQEYQQPKPNLTIKNRPQKSI
Ga0209192_1006544823300027752MarineLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0209709_1011788223300027779MarineMITGIVFGGLGKPASKPKPLLAPLPAEYQQPKPNLTIKNHTPKPL
Ga0209830_1012665813300027791MarineLRRRYCNLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
(restricted) Ga0233415_1029196313300027861SeawaterMITSINFGGLGKPAPKPKPLIAPLPEEYKQPQPNLTIKNRPPKS
Ga0228674_103303013300028008SeawaterFGGLSKPAPKPVPLVAPLPEEYKQTSSNQTIKNHSPKPQ
Ga0228615_110083513300028418SeawaterTAINFGGLGKPQPKPKPLVAPLPEEYKQTSSNQTIKNHNPKPQ
Ga0307488_1012687933300031519Sackhole BrineLITGVRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0307488_1019438923300031519Sackhole BrineMITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0307488_1036698123300031519Sackhole BrineQSKTVRRRYCNLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0307488_1044859113300031519Sackhole BrineHCRMITGINFGGLGKPQPKPKPKIAPLPEEYKQPKPNLTIKNRPQKSI
Ga0307999_100929323300031608MarineLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKQNLTIKNHTPKPL
Ga0302114_1017603723300031621MarineMITGINFGGLGKPQPKPKPNIAPLPQEYQQPKPNLTIKNRPQKSI
Ga0302114_1029598713300031621MarineGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0302126_1010163413300031622MarineTFRRRHCNLITGIRFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL
Ga0302125_1006878623300031638MarineFGGLGKPQPKAKPIIAPLPEEYKQPKPNLTIKNHTPKPL


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