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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F075484 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 119 |
| Average Sequence Length | 52 residues |
| Representative Sequence | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRYDYLKQIRKDFSFITS |
| Number of Associated Samples | 115 |
| Number of Associated Scaffolds | 119 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.84 % |
| % of genes near scaffold ends (potentially truncated) | 97.48 % |
| % of genes from short scaffolds (< 2000 bps) | 94.96 % |
| Associated GOLD sequencing projects | 110 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (73.950 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater (24.370 % of family members) |
| Environment Ontology (ENVO) | Unclassified (55.462 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (93.277 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 68.52% β-sheet: 0.00% Coil/Unstructured: 31.48% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 119 Family Scaffolds |
|---|---|---|
| PF06723 | MreB_Mbl | 91.60 |
| PF01425 | Amidase | 4.20 |
| PF02686 | Glu-tRNAGln | 3.36 |
| PF02934 | GatB_N | 0.84 |
| COG ID | Name | Functional Category | % Frequency in 119 Family Scaffolds |
|---|---|---|---|
| COG1077 | Cell shape-determining ATPase MreB, actin-like superfamily | Cell cycle control, cell division, chromosome partitioning [D] | 91.60 |
| COG0154 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase | Translation, ribosomal structure and biogenesis [J] | 4.20 |
| COG0721 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit | Translation, ribosomal structure and biogenesis [J] | 3.36 |
| COG0064 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit | Translation, ribosomal structure and biogenesis [J] | 0.84 |
| COG2511 | Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain | Translation, ribosomal structure and biogenesis [J] | 0.84 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 73.95 % |
| All Organisms | root | All Organisms | 26.05 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 24.37% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 14.29% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 10.92% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 7.56% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 5.04% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 5.04% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 4.20% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 4.20% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 4.20% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 2.52% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 2.52% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 1.68% |
| Marine Surface Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water | 1.68% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 1.68% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 1.68% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 1.68% |
| Marine | Environmental → Aquatic → Marine → Inlet → Unclassified → Marine | 0.84% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.84% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.84% |
| Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 0.84% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 0.84% |
| M | Environmental → Aquatic → Marine → Unclassified → Unclassified → M | 0.84% |
| Ocean Water | Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water | 0.84% |
| Polar Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine | 0.84% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2006543006 | Marine microbial communities from anoxic basin of Saanich Inlet - SI040908_100 | Environmental | Open in IMG/M |
| 3300000101 | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 | Environmental | Open in IMG/M |
| 3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
| 3300001348 | Pelagic Microbial community sample from North Sea - COGITO 998_met_04 | Environmental | Open in IMG/M |
| 3300001351 | Pelagic Microbial community sample from North Sea - COGITO 998_met_03 | Environmental | Open in IMG/M |
| 3300001354 | Pelagic Microbial community sample from North Sea - COGITO 998_met_05 | Environmental | Open in IMG/M |
| 3300003495 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA | Environmental | Open in IMG/M |
| 3300003583 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA | Environmental | Open in IMG/M |
| 3300003592 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA | Environmental | Open in IMG/M |
| 3300004110 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA | Environmental | Open in IMG/M |
| 3300005731 | Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14 | Environmental | Open in IMG/M |
| 3300005747 | Seawater microbial communities from Vineyard Sound, MA, USA - control T14 | Environmental | Open in IMG/M |
| 3300005837 | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 | Environmental | Open in IMG/M |
| 3300006352 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA | Environmental | Open in IMG/M |
| 3300007234 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA | Environmental | Open in IMG/M |
| 3300007280 | Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point | Environmental | Open in IMG/M |
| 3300007647 | Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 | Environmental | Open in IMG/M |
| 3300008993 | Marine microbial communities from eastern North Pacific Ocean - P1 free-living | Environmental | Open in IMG/M |
| 3300009049 | Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02 | Environmental | Open in IMG/M |
| 3300009071 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 | Environmental | Open in IMG/M |
| 3300009080 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 | Environmental | Open in IMG/M |
| 3300009132 | Combined Assembly of Gp0139359, Gp0139510 | Environmental | Open in IMG/M |
| 3300009193 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 | Environmental | Open in IMG/M |
| 3300009426 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 | Environmental | Open in IMG/M |
| 3300009441 | Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome | Environmental | Open in IMG/M |
| 3300009445 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 | Environmental | Open in IMG/M |
| 3300009447 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 | Environmental | Open in IMG/M |
| 3300009449 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 | Environmental | Open in IMG/M |
| 3300009497 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 | Environmental | Open in IMG/M |
| 3300009785 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 | Environmental | Open in IMG/M |
| 3300012782 | Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA30.ICE_1m.20151125 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012969 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300014818 | Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation | Environmental | Open in IMG/M |
| 3300014959 | Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubation | Environmental | Open in IMG/M |
| 3300016731 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412AT metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300016776 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011505AT metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017768 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2) | Environmental | Open in IMG/M |
| 3300017782 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19 | Environmental | Open in IMG/M |
| 3300017950 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018036 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300020051 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020166 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 | Environmental | Open in IMG/M |
| 3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
| 3300020325 | Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966) | Environmental | Open in IMG/M |
| 3300020335 | Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035) | Environmental | Open in IMG/M |
| 3300020365 | Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143) | Environmental | Open in IMG/M |
| 3300020385 | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) | Environmental | Open in IMG/M |
| 3300020438 | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) | Environmental | Open in IMG/M |
| 3300020595 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1 | Environmental | Open in IMG/M |
| 3300020810 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300021085 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 | Environmental | Open in IMG/M |
| 3300021185 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 | Environmental | Open in IMG/M |
| 3300021347 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 | Environmental | Open in IMG/M |
| 3300021371 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300022369 | Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1119 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022920 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG | Environmental | Open in IMG/M |
| 3300022929 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG | Environmental | Open in IMG/M |
| 3300022933 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG | Environmental | Open in IMG/M |
| 3300023109 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG | Environmental | Open in IMG/M |
| 3300023273 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG | Environmental | Open in IMG/M |
| 3300023698 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 27R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300023702 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 82R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300023704 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 35R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300023709 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300024185 | Seawater microbial communities from Monterey Bay, California, United States - 84D | Environmental | Open in IMG/M |
| 3300024231 | Seawater microbial communities from Monterey Bay, California, United States - 43D | Environmental | Open in IMG/M |
| 3300024242 | Seawater microbial communities from Monterey Bay, California, United States - 91D | Environmental | Open in IMG/M |
| 3300024244 | Seawater microbial communities from Monterey Bay, California, United States - 125D_r | Environmental | Open in IMG/M |
| 3300024255 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG | Environmental | Open in IMG/M |
| 3300024259 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MG | Environmental | Open in IMG/M |
| 3300024319 | Seawater microbial communities from Monterey Bay, California, United States - 85D | Environmental | Open in IMG/M |
| 3300024321 | Seawater microbial communities from Monterey Bay, California, United States - 31D | Environmental | Open in IMG/M |
| 3300024328 | Seawater microbial communities from Monterey Bay, California, United States - 44D | Environmental | Open in IMG/M |
| 3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
| 3300024348 | 0.2um to 3um size fraction coassembly | Environmental | Open in IMG/M |
| 3300024413 | Seawater microbial communities from Monterey Bay, California, United States - 21D | Environmental | Open in IMG/M |
| 3300025577 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes) | Environmental | Open in IMG/M |
| 3300025596 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025637 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes) | Environmental | Open in IMG/M |
| 3300025640 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes) | Environmental | Open in IMG/M |
| 3300025641 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes) | Environmental | Open in IMG/M |
| 3300025654 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes) | Environmental | Open in IMG/M |
| 3300025665 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025667 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025684 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025770 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025809 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes) | Environmental | Open in IMG/M |
| 3300025816 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes) | Environmental | Open in IMG/M |
| 3300025830 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes) | Environmental | Open in IMG/M |
| 3300025832 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes) | Environmental | Open in IMG/M |
| 3300025870 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025892 | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes) | Environmental | Open in IMG/M |
| 3300026418 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 12R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026426 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 23R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026449 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 56R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026479 | Seawater microbial communities from Monterey Bay, California, United States - 26D | Environmental | Open in IMG/M |
| 3300026495 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 24R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026503 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026504 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 46R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026511 | Seawater microbial communities from Monterey Bay, California, United States - 27D | Environmental | Open in IMG/M |
| 3300026513 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 51R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300027406 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes) | Environmental | Open in IMG/M |
| 3300027757 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) | Environmental | Open in IMG/M |
| 3300028008 | Seawater microbial communities from Monterey Bay, California, United States - 1D_r | Environmental | Open in IMG/M |
| 3300028092 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 28R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028106 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 66R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028132 | Seawater microbial communities from Monterey Bay, California, United States - 61D | Environmental | Open in IMG/M |
| 3300028135 | Seawater microbial communities from Monterey Bay, California, United States - 7D | Environmental | Open in IMG/M |
| 3300028287 | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m | Environmental | Open in IMG/M |
| 3300028335 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 14R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028416 | Seawater microbial communities from Monterey Bay, California, United States - 15D | Environmental | Open in IMG/M |
| 3300031700 | Marine microbial communities from Western Arctic Ocean, Canada - CB9_surface | Environmental | Open in IMG/M |
| 3300031774 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915 | Environmental | Open in IMG/M |
| 3300032073 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| 2007069286 | 2006543006 | Marine | MALKASKKRLNLFTSNFSLTYFISFMLLTILIMFMDSRYDYLKQI |
| DelMOSum2010_101480572 | 3300000101 | Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYL |
| DelMOSpr2010_102513331 | 3300000116 | Marine | MAIKVSKKELSLFTTNFSLTYFILFVLLALLMMFMDSRYEYLKQIRKDFSFITSPLIILTNDS |
| JGI20154J14316_101049262 | 3300001348 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFILFVFLAVLMMFMDSRYEYLKQIRKDFSFITSPLITLTND |
| JGI20153J14318_101151112 | 3300001351 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFILFVFLAVLMMFM |
| JGI20155J14468_100989112 | 3300001354 | Pelagic Marine | MATKVSKKELSLFTNNFSLTYFILFIFLAVLIMFMDSRYEYLKQIRKDIS |
| JGI20155J14468_101662891 | 3300001354 | Pelagic Marine | MAIKVSKKELSLFTTNFSLNYFILFVLLALLMMFMDSRHDYLKQIRKDFSFITSP |
| JGI26244J51143_10416452 | 3300003495 | Marine | MGIKATKKGLSLFTTNFSLTYFIFFIFLTLLMMFMDSRYDYLKHIRK |
| JGI26253J51717_10832052 | 3300003583 | Marine | MALKVSKKKLSLFTSNFSLTYFIFFITLTFVLMFMDYRYDYLKQIRKDLSIVT |
| JGI26246J51724_10063121 | 3300003592 | Marine | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFIT |
| JGI26246J51724_10793061 | 3300003592 | Marine | MAIKVSKKELSLFTTNFSLSYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFIT |
| Ga0008648_101277281 | 3300004110 | Marine | MGIKATKKELSLFTTNFSLTYFILFIFLTLLMMFMDSRYDYLK |
| Ga0076919_10765082 | 3300005731 | M | MALKVSKKELSLFTSNLSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVT |
| Ga0076924_12304882 | 3300005747 | Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVT |
| Ga0078893_108009622 | 3300005837 | Marine Surface Water | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRHDYLKQIRKDFSFIT |
| Ga0075448_100044891 | 3300006352 | Marine | MALKVTKKNLSLFTTNFSLTYFILLIFLTLLMMFMDSRYD |
| Ga0075460_103170522 | 3300007234 | Aqueous | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSPFISSSNS |
| Ga0101452_1084075 | 3300007280 | Marine Surface Water | MAIKVSKKELSLFTTNFSFTYFILFIFLTVLMMFMDSRYEYLKQIRKDFSFITSPLIILTNDSINF |
| Ga0102855_10474572 | 3300007647 | Estuarine | MAIKVSKKELSLFTTNFSLTYFILFVFLALLIMFMDSRYEYLKQIRKDFSFI |
| Ga0104258_10931961 | 3300008993 | Ocean Water | MAIKVSKKELSLFTTNFSLSYFILFILIALLMMFMDSRYDYLKQIRKDF |
| Ga0102911_10670182 | 3300009049 | Estuarine | MAIKVSKKELSLFTTNFSLPYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPLITLTNDSIN |
| Ga0115566_104621641 | 3300009071 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITS |
| Ga0102815_104232241 | 3300009080 | Estuarine | MAIKVSKKELSLFTTNFSLSYFILFILIALLMMFMDSRYDYLKQIRKDFSF |
| Ga0118730_11512371 | 3300009132 | Marine | MAIKVSKKELSLFTSNFSLTYFIFFVALTFFIMYMDNRYDYLKKIRKDISVLTIPFVNSSNALI |
| Ga0115551_12258702 | 3300009193 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFILFVFLAVLMMFMDSRYEYLK |
| Ga0115547_12697341 | 3300009426 | Pelagic Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLS |
| Ga0115007_108214421 | 3300009441 | Marine | MAYKVSKKKLSLFTTNFSLTYFILFIFLTVLMMFMDSRYDYLKQIRKDFSFITSPLII |
| Ga0115553_13610302 | 3300009445 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFILFVFLAVLMMFMDIRYEYLKQI |
| Ga0115560_12344791 | 3300009447 | Pelagic Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSPFISSSNSIMN |
| Ga0115558_12312222 | 3300009449 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFILFILLTLLMMFMDSRHDYLKQ |
| Ga0115569_101530442 | 3300009497 | Pelagic Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSPFISS |
| Ga0115001_105803022 | 3300009785 | Marine | MALKVSKKDLSLFTTSFSLTFFIFFIFLTVLMMFMDSRYDYLKQIRKDFSFI |
| Ga0138268_12640652 | 3300012782 | Polar Marine | MAYKVSKKKLSLFTTNFSLTYFILFIFFTVVMMFMDS |
| Ga0129332_12706632 | 3300012969 | Aqueous | MAIKVSKKELSLFTTNFSFTYFILFVFLALLIMFMDSRYEYLKQIR |
| Ga0134300_10585042 | 3300014818 | Marine | MAIKVSKKELSLFTTNFSFTYFILFVFLAVLMMFMDSRYEYLKQI |
| Ga0134299_10598582 | 3300014959 | Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLK |
| Ga0182094_10483501 | 3300016731 | Salt Marsh | MAIKASKKELSLFTSNFSLTYFIFFVALTFFIMYMDNHDDYLKKIRKDFSIVTT |
| Ga0182046_10344571 | 3300016776 | Salt Marsh | MAIKASKKELSLFTSNFSLTYFIFFVALTFFIMYMDNRDDYLKKIRKDFS |
| Ga0187220_11421922 | 3300017768 | Seawater | MAIKVSKKELSLFTTNFSLPNFIFFVFLAVLMMLMDSRYDYLKQ |
| Ga0181380_12645212 | 3300017782 | Seawater | MAIKVSKKELSLFTTNFSLAYFILFILLTLLMMFMDSRHDYLKQIRKDFSFITSPLITLT |
| Ga0181607_106404622 | 3300017950 | Salt Marsh | MAIKASKKELSLFTSNFSLTYFIFFVALTFFIMYMDNRDDYLKKIRKDFSIVTTLFINS |
| Ga0181600_101727001 | 3300018036 | Salt Marsh | MALKVSKKELSLFTSNFSLTYFIFFITLTFILMFVDYRYDYLKQIRKDLSI |
| Ga0181555_11045511 | 3300020051 | Salt Marsh | MAIKVSKKELSLFTSNFSLTYFIFFVALTFFIMYMDNRDDYLKKIRKDFSMVTTPFVN |
| Ga0206128_12897891 | 3300020166 | Seawater | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSPFISSTNSIMNFFG |
| Ga0206131_101118551 | 3300020185 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRHDYLKQIRKDFSFITS |
| Ga0211507_10468102 | 3300020325 | Marine | MVIKVYKKELSLFTSNFSLTYFIFFVTLTFFIMYMDNRYDYLKQIRKDISVVTSPFVNSSNAL |
| Ga0211690_10277411 | 3300020335 | Marine | MAIKVSKKELSLFTSNFSITYFILFIFLSVLMMFMDSRYEYLKQIRKDFSFITSPLIILTNDSINFF |
| Ga0211506_12099721 | 3300020365 | Marine | MVIKVYKKELSLFTSNFSLTYFIFFVTLTFFIMYMDNRYDYLKQIRKDISVVTSPFVNSSNALIDFL |
| Ga0211677_103631221 | 3300020385 | Marine | MAIKVSKKELSLFTTNFSLIYFILFILLALLMMFMDSRHDYLKQIRKDFSFITS |
| Ga0211576_104464741 | 3300020438 | Marine | MALKVTKKELSLFTTNFSLTYFIFFVFLTLLMMFMDSRYDYLKQIRKDFSFITSPLIILT |
| Ga0206126_100830401 | 3300020595 | Seawater | MTIKVSKKELSLFTTNFSLPFFIFFVFLTVLMMFMDSRYEYLKQIRKDFSF |
| Ga0181598_10291451 | 3300020810 | Salt Marsh | MAIKVSKKELSLFTSNFSLTYFIFFVAFTFFIMYMDNRDD |
| Ga0206677_100606441 | 3300021085 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRK |
| Ga0206677_103773172 | 3300021085 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLTLLMMFMDSRHDYLKQIRKD |
| Ga0206682_100502691 | 3300021185 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRY |
| Ga0213862_100301994 | 3300021347 | Seawater | MAIKVSKKELSLFTSNFSLTYFTFFVVLTFFIMYMDNRDDY |
| Ga0213863_100729093 | 3300021371 | Seawater | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSPF |
| Ga0222717_105564961 | 3300021957 | Estuarine Water | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRYDYL |
| Ga0210310_10390752 | 3300022369 | Estuarine | MAIKVSKKELSLFTTNFSLSYFILFIFLAVLMMFMDSRYDYLKQIRKDF |
| (restricted) Ga0233426_100790431 | 3300022920 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPFI |
| Ga0255752_101608612 | 3300022929 | Salt Marsh | MAIKVSKKELSLFTSNFSLTYFIFFVALTFFIMYMDN |
| (restricted) Ga0233427_100137411 | 3300022933 | Seawater | MALKVTKKELSLFTTNFSLTYFIFFVFLTLLMMFMDSRY |
| (restricted) Ga0233432_101633792 | 3300023109 | Seawater | MAIKVSKKELSLFTTNFSLSYFILFILIALLMIFMDSRYDYLKQIRKDFSFITSPLITLTND |
| Ga0255763_12689622 | 3300023273 | Salt Marsh | MAIKVSKKELSLFTSNFSLTYFIFFVALTFFIMYIDNRDDYLKKIRKDFSMVT |
| Ga0228682_10454391 | 3300023698 | Seawater | MAIKVSKKELSLFTTNFSLAYFILFILLALLMMFMDSRYDYLKQIRKDFSF |
| Ga0232119_10126861 | 3300023702 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLITLT |
| Ga0228684_10328272 | 3300023704 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRHDYLKQIRKDFSFITSPLITLTNDS |
| Ga0232122_10271632 | 3300023709 | Salt Marsh | MAIKVSKKELSLFTSNFSLTYFIFFVALTFFIMYMDNRDDYLKKIRKDFSIVTTLFINY |
| Ga0228669_11053592 | 3300024185 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDIRHDYLK |
| Ga0233399_11005722 | 3300024231 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPL |
| Ga0228673_10978431 | 3300024242 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRH |
| Ga0228678_10541081 | 3300024244 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFS |
| (restricted) Ga0233438_100914722 | 3300024255 | Seawater | MAIKVSKKELSLFTTNFSLSYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPLIILT |
| (restricted) Ga0233437_13574351 | 3300024259 | Seawater | MAIKASKKKLSLFTTNFSLPFFIFFVFLTVLMMFMDSRYEYLKQIRKDFSF |
| Ga0228670_10889202 | 3300024319 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSP |
| Ga0228626_11362371 | 3300024321 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRY |
| Ga0228635_10732251 | 3300024328 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLITL |
| Ga0244775_110387921 | 3300024346 | Estuarine | MALKVTKKELSLFTTNFSLTYFIFFVFLTLLMMFMDSRYDYLKQI |
| Ga0244776_105473261 | 3300024348 | Estuarine | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPLII |
| Ga0233393_10457621 | 3300024413 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLITLTNDSINF |
| Ga0209304_11174072 | 3300025577 | Pelagic Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSLFIS |
| Ga0209662_11175561 | 3300025596 | Marine | MGIKATKKGLSLFTTNFSLTYFIFFIFLTLLMMFMDSRYDYLKQIRKDFSFITNPLIVLTNDSIN |
| Ga0209197_10717291 | 3300025637 | Pelagic Marine | MALKVSKKKLSLFTSNFSLTYFIFFITLTFVLMFMDYRYDYLKQIRKDLSIVTSPFISSSNSIMN |
| Ga0209198_10985162 | 3300025640 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFIIFVFLAVLMMFMDSRYEYL |
| Ga0209833_10696762 | 3300025641 | Pelagic Marine | MALKVSKKELSLFTSNFSLTYFIFFIILTFVLMFMDYRYDYLKQIRKDLSIVTSPFISSSNSIMNFFE |
| Ga0209196_10710412 | 3300025654 | Pelagic Marine | MTIKVSKKELSLFTTNFSLPFFIFFVFLTVLMMFMDSRYEYLKQIRKDFSFITSPLIIL |
| Ga0209196_11441352 | 3300025654 | Pelagic Marine | MAIKVSKKELSLFTTNFSLTYFIFFVFLAVLMMLMDSRYEYLKQIRKDFSFITSPLII |
| Ga0209360_10597872 | 3300025665 | Marine | MGIKATKKELSLFTTNFSLTYFILFIFLTLLMMFMDSRYDYLKQIRKDFSFITNPLIVLT |
| Ga0209043_11367901 | 3300025667 | Marine | MGIKATKKELSLFTTNFSLTYFILFIFLTLLMMFMDSRYDYLKQIRKDFSFITSPL |
| Ga0209652_11801702 | 3300025684 | Marine | MAIKVSKKELSLFTTNFSLSYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPLITL |
| Ga0209362_11609542 | 3300025770 | Marine | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPL |
| Ga0209199_11418022 | 3300025809 | Pelagic Marine | MAIKVSKKELSLFTTNFSFTYFILFVFLAVLIMFMDSRYEYLKQIRKDFSFITSPLII |
| Ga0209193_11620732 | 3300025816 | Pelagic Marine | MALKVSKKKLSLFTSNFSLTYFIFFITLTFVLMFMDYRYDYLKQIRKDLSIVTTPFISSSNS |
| Ga0209832_10838731 | 3300025830 | Pelagic Marine | MAIKVSKKELSLFTTNFSLSYFILFILIALLMMFMDS |
| Ga0209307_11642252 | 3300025832 | Pelagic Marine | MTIKVSKKELSLFTTNFSLPFFIFFVFLTVLMMFMDS |
| Ga0209666_12787331 | 3300025870 | Marine | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLK |
| Ga0209630_102108152 | 3300025892 | Pelagic Marine | MTIKVSKKELSLFTTNFSLPFFIFFVFLTVLMMFMDSRYEYLKQIRKDFSFITAP |
| Ga0247564_10793971 | 3300026418 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLITLTND |
| Ga0247570_10475302 | 3300026426 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRHDYLKQIRKDFSFITSPLI |
| Ga0247593_10831601 | 3300026449 | Seawater | MAIKVSKKELSLFTTNFSLTYFVLFILLALLMMFMDRRYDYLKQIRKDFSFITSPLITLT |
| Ga0228622_10909662 | 3300026479 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYD |
| Ga0247571_10369002 | 3300026495 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRHDYLKQIRKDFSF |
| Ga0247605_10962032 | 3300026503 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLITLTNDS |
| Ga0247587_11319961 | 3300026504 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLISLT |
| Ga0233395_10769762 | 3300026511 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLK |
| Ga0247590_11744361 | 3300026513 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRHDYLKQIRKDF |
| Ga0208965_11143572 | 3300027406 | Marine | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRHDYLKQI |
| Ga0208671_103032361 | 3300027757 | Estuarine | MAIKVSKKELSLFTTNFSLSYFILFILIALLMMFMDSRYDYLKQIRKDFSFITSPLITLT |
| Ga0228674_10711401 | 3300028008 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFITSPLI |
| Ga0247574_10611231 | 3300028092 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILIALLMMFMDSRYDYLKQIRKDFSFIT |
| Ga0247596_10251451 | 3300028106 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILIALLMMFMDSRYDYLKQIRKDFSF |
| Ga0228649_11240112 | 3300028132 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRHDYLKQIRKDFSFITSPLITLTNDS |
| Ga0228606_10794122 | 3300028135 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMD |
| Ga0257126_10565743 | 3300028287 | Marine | MAIKVSKKELSLFTTNFSLTYFILFIFLAVLMMFMDSRYDYLKQIRKDFSFITSPLIILT |
| Ga0247566_10142882 | 3300028335 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFILLALLMMFMDSRYDYLKQIRKDFSFITS |
| Ga0228614_11024031 | 3300028416 | Seawater | MAIKVSKKELSLFTTNFSLPYFILFILLALLMMFMDSRYDYLKQIRKDFSFI |
| Ga0302130_10612902 | 3300031700 | Marine | MAYKVSKKKLSLFTTNFSLTYFILFIFLTVLMMFMDSRYDYLKQIRKDFS |
| Ga0315331_102194312 | 3300031774 | Seawater | MAIKVSKKELSLFTTNFSLNYFIFFILLSLLMMFMDSRHNYLKQIRKDFSFITSPLITLTNDS |
| Ga0315315_115914071 | 3300032073 | Seawater | MAIKVSKKELSLFTTNFSLTYFILFVFLAVLMMFMDSRYEYLKQIRKDFSFITSPLIILT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |