Metagenome / Metatranscriptome Family F075808

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075808
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	51 residues
Representative Sequence	MTERCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRW
Number of Associated Samples	78
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.75 %
% of genes near scaffold ends (potentially truncated)	97.46 %
% of genes from short scaffolds (< 2000 bps)	91.53 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.576 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (30.508 % of family members)
Environment Ontology (ENVO)	Unclassified (41.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.864 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 39.58% Coil/Unstructured: 60.42%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF08450	SGL	2.54
PF02810	SEC-C	1.69
PF13470	PIN_3	0.85
PF10438	Cyc-maltodext_C	0.85
PF06736	TMEM175	0.85
PF01738	DLH	0.85
PF02771	Acyl-CoA_dh_N	0.85
PF07386	DUF1499	0.85
PF00027	cNMP_binding	0.85
PF13565	HTH_32	0.85
PF01609	DDE_Tnp_1	0.85
PF01850	PIN	0.85
PF13529	Peptidase_C39_2	0.85
PF00248	Aldo_ket_red	0.85
PF12760	Zn_Tnp_IS1595	0.85
PF07883	Cupin_2	0.85
PF03330	DPBB_1	0.85
PF03928	HbpS-like	0.85
PF01797	Y1_Tnp	0.85
PF12759	HTH_Tnp_IS1	0.85
PF00216	Bac_DNA_binding	0.85
PF01841	Transglut_core	0.85
PF03811	Zn_Tnp_IS1	0.85
PF12385	Peptidase_C70	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	2.54
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	2.54
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.85
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.85
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.85
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.85
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.85
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.85
COG3677	Transposase InsA	Mobilome: prophages, transposons [X]	0.85
COG4446	Uncharacterized conserved protein, DUF1499 family	Function unknown [S]	0.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
All Organisms	root	All Organisms	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
cellular organisms	root	All Organisms → cellular organisms	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.39 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.85 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.85 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.24 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.54 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.24 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.54 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.39 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	2.54 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.85 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.39 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2.54 %
Caenispirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum	0.85 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.85 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.39 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2.54 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.85 %
Caenispirillum salinarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum	0.85 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.39 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2.54 %
Seonamhaeicola	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola	0.85 %
Caenispirillum salinarum AK4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum → Caenispirillum salinarum AK4	0.85 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.39 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2.54 %
Seonamhaeicola marinus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola marinus	0.85 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	0.85 %
Caenispirillum salinarum AK4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum → Caenispirillum salinarum AK4	0.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.39 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2.54 %
Myxococcus sp. RHSTA-1-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	0.85 %
Seonamhaeicola marinus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola marinus	0.85 %
Caenispirillum salinarum AK4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum → Caenispirillum salinarum AK4	0.85 %
Candidatus Entotheonella palauensis	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004267\|Ga0066396_10096631	Not Available	541	Open in IMG/M
3300004633\|Ga0066395_10340649	Not Available	831	Open in IMG/M
3300004633\|Ga0066395_10567666	Not Available	661	Open in IMG/M
3300005177\|Ga0066690_10809974	Not Available	608	Open in IMG/M
3300005332\|Ga0066388_107290938	Not Available	555	Open in IMG/M
3300005555\|Ga0066692_10527815	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	749	Open in IMG/M
3300005559\|Ga0066700_10288333	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1155	Open in IMG/M
3300005566\|Ga0066693_10485301	Not Available	509	Open in IMG/M
3300005576\|Ga0066708_10779944	Not Available	601	Open in IMG/M
3300005713\|Ga0066905_101734844	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005713\|Ga0066905_102253811	Not Available	508	Open in IMG/M
3300005764\|Ga0066903_101868380	Not Available	1149	Open in IMG/M
3300005764\|Ga0066903_102359131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1028	Open in IMG/M
3300005764\|Ga0066903_103941927	Not Available	796	Open in IMG/M
3300005764\|Ga0066903_105246824	Not Available	685	Open in IMG/M
3300006049\|Ga0075417_10182111	Not Available	989	Open in IMG/M
3300006058\|Ga0075432_10134815	Not Available	938	Open in IMG/M
3300006847\|Ga0075431_100142748	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300006853\|Ga0075420_100739784	Not Available	848	Open in IMG/M
3300007255\|Ga0099791_10405614	Not Available	657	Open in IMG/M
3300007258\|Ga0099793_10333342	Not Available	740	Open in IMG/M
3300009038\|Ga0099829_10179282	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1705	Open in IMG/M
3300009090\|Ga0099827_11163591	Not Available	670	Open in IMG/M
3300009094\|Ga0111539_10141225	All Organisms → cellular organisms → Bacteria	2819	Open in IMG/M
3300009100\|Ga0075418_10078420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum → Caenispirillum salinarum AK4	3514	Open in IMG/M
3300009143\|Ga0099792_10144644	Not Available	1303	Open in IMG/M
3300009147\|Ga0114129_10160799	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3068	Open in IMG/M
3300009147\|Ga0114129_10565109	Not Available	1477	Open in IMG/M
3300009147\|Ga0114129_10673147	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300009147\|Ga0114129_12961620	Not Available	560	Open in IMG/M
3300009156\|Ga0111538_10058189	All Organisms → cellular organisms → Bacteria → Proteobacteria	4934	Open in IMG/M
3300009162\|Ga0075423_13118167	Not Available	508	Open in IMG/M
3300009553\|Ga0105249_10374092	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola marinus	1449	Open in IMG/M
3300010046\|Ga0126384_10302324	Not Available	1316	Open in IMG/M
3300010046\|Ga0126384_10491105	Not Available	1056	Open in IMG/M
3300010046\|Ga0126384_11058770	Not Available	741	Open in IMG/M
3300010047\|Ga0126382_10418586	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300010358\|Ga0126370_11613219	Not Available	621	Open in IMG/M
3300010359\|Ga0126376_10231986	Not Available	1556	Open in IMG/M
3300010359\|Ga0126376_10265652	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300010360\|Ga0126372_10265569	Not Available	1483	Open in IMG/M
3300010360\|Ga0126372_10521260	Not Available	1121	Open in IMG/M
3300010360\|Ga0126372_11510900	Not Available	708	Open in IMG/M
3300010360\|Ga0126372_11802477	Not Available	655	Open in IMG/M
3300010360\|Ga0126372_12798912	Not Available	540	Open in IMG/M
3300010362\|Ga0126377_10070338	Not Available	3111	Open in IMG/M
3300010362\|Ga0126377_11686890	Not Available	709	Open in IMG/M
3300010362\|Ga0126377_13212304	Not Available	528	Open in IMG/M
3300010362\|Ga0126377_13228749	Not Available	527	Open in IMG/M
3300010366\|Ga0126379_10269240	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300010366\|Ga0126379_10727979	Not Available	1087	Open in IMG/M
3300010366\|Ga0126379_12377795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	629	Open in IMG/M
3300010366\|Ga0126379_13619971	Not Available	518	Open in IMG/M
3300010398\|Ga0126383_10161829	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella palauensis	2103	Open in IMG/M
3300010398\|Ga0126383_10301742	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300010398\|Ga0126383_10539183	Not Available	1231	Open in IMG/M
3300010398\|Ga0126383_11607587	Not Available	739	Open in IMG/M
3300010398\|Ga0126383_11713336	Not Available	717	Open in IMG/M
3300012189\|Ga0137388_11675017	Not Available	570	Open in IMG/M
3300012206\|Ga0137380_11089583	Not Available	681	Open in IMG/M
3300012209\|Ga0137379_10972749	Not Available	754	Open in IMG/M
3300012356\|Ga0137371_10219921	Not Available	1485	Open in IMG/M
3300012361\|Ga0137360_10438647	Not Available	1105	Open in IMG/M
3300012362\|Ga0137361_10871437	Not Available	817	Open in IMG/M
3300012388\|Ga0134031_1302390	Not Available	516	Open in IMG/M
3300012917\|Ga0137395_10877476	Not Available	650	Open in IMG/M
3300012918\|Ga0137396_10091827	All Organisms → cellular organisms → Bacteria	2155	Open in IMG/M
3300012918\|Ga0137396_10662429	Not Available	771	Open in IMG/M
3300012925\|Ga0137419_11074612	Not Available	669	Open in IMG/M
3300012948\|Ga0126375_10443272	Not Available	952	Open in IMG/M
3300012948\|Ga0126375_11279634	Not Available	615	Open in IMG/M
3300012948\|Ga0126375_12001844	Not Available	512	Open in IMG/M
3300012971\|Ga0126369_10493188	Not Available	1281	Open in IMG/M
3300012971\|Ga0126369_11082071	Not Available	891	Open in IMG/M
3300012971\|Ga0126369_11203304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	847	Open in IMG/M
3300012971\|Ga0126369_12476431	Not Available	604	Open in IMG/M
3300012971\|Ga0126369_12852299	Not Available	566	Open in IMG/M
3300012971\|Ga0126369_13043990	Not Available	549	Open in IMG/M
3300012971\|Ga0126369_13283240	Not Available	530	Open in IMG/M
3300012977\|Ga0134087_10756247	Not Available	521	Open in IMG/M
3300013308\|Ga0157375_12878959	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	575	Open in IMG/M
3300014154\|Ga0134075_10260663	Not Available	751	Open in IMG/M
3300016270\|Ga0182036_11300661	Not Available	607	Open in IMG/M
3300016294\|Ga0182041_11824668	Not Available	564	Open in IMG/M
3300016341\|Ga0182035_10739622	Not Available	859	Open in IMG/M
3300016387\|Ga0182040_11589258	Not Available	557	Open in IMG/M
3300016404\|Ga0182037_11059618	Not Available	708	Open in IMG/M
3300017792\|Ga0163161_10842496	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300018076\|Ga0184609_10089127	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300019789\|Ga0137408_1489154	Not Available	2753	Open in IMG/M
3300021073\|Ga0210378_10140805	All Organisms → cellular organisms → Bacteria → Proteobacteria	933	Open in IMG/M
3300021560\|Ga0126371_13733186	Not Available	513	Open in IMG/M
3300026310\|Ga0209239_1215507	Not Available	677	Open in IMG/M
3300027577\|Ga0209874_1070547	Not Available	870	Open in IMG/M
3300027646\|Ga0209466_1062778	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300027873\|Ga0209814_10367417	Not Available	630	Open in IMG/M
3300027874\|Ga0209465_10071090	Not Available	1686	Open in IMG/M
3300027874\|Ga0209465_10171699	Not Available	1080	Open in IMG/M
3300027882\|Ga0209590_10885679	Not Available	563	Open in IMG/M
3300028380\|Ga0268265_12392790	Not Available	535	Open in IMG/M
3300031680\|Ga0318574_10481505	Not Available	727	Open in IMG/M
3300031744\|Ga0306918_10535310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	918	Open in IMG/M
3300031744\|Ga0306918_10668444	Not Available	813	Open in IMG/M
3300031890\|Ga0306925_11427630	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300031893\|Ga0318536_10253096	Not Available	895	Open in IMG/M
3300031945\|Ga0310913_11163149	Not Available	538	Open in IMG/M
3300031946\|Ga0310910_10585635	Not Available	885	Open in IMG/M
3300031947\|Ga0310909_10518315	Not Available	999	Open in IMG/M
3300031947\|Ga0310909_11055734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	662	Open in IMG/M
3300031954\|Ga0306926_10864757	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300031954\|Ga0306926_12053516	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300032001\|Ga0306922_12230636	Not Available	527	Open in IMG/M
3300032059\|Ga0318533_10067759	Not Available	2412	Open in IMG/M
3300032076\|Ga0306924_10764260	Not Available	1080	Open in IMG/M
3300032076\|Ga0306924_10954191	Not Available	945	Open in IMG/M
3300032076\|Ga0306924_12287726	Not Available	548	Open in IMG/M
3300032090\|Ga0318518_10721817	Not Available	507	Open in IMG/M
3300032261\|Ga0306920_102570627	Not Available	699	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.59%
Host-Associated	Host-Associated	14.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.90%
Plants	Host-Associated → Plants	14.41%
Aquatic	Environmental → Aquatic	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.71%
Loam	Environmental → Terrestrial → Soil → Loam	11.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	30.51%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.54%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066396_100966311	3300004267	Tropical Forest Soil	MTERYTLDGFVITPIEPQGSLYAGTDYGRLFINEARTGVMAWWSMGRWTDRA
Ga0066395_103406492	3300004633	Tropical Forest Soil	MTERCTRDGFVITPIEPQGSRYAGADHGRLFINEARTGVMAWWSMGRW
Ga0066395_105676661	3300004633	Tropical Forest Soil	MTERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAI
Ga0066690_108099742	3300005177	Soil	MTERCTRDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWW
Ga0066388_1072909381	3300005332	Tropical Forest Soil	MTERCTLDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRA
Ga0066692_105278151	3300005555	Soil	MTERCTLDGFVITPMEPQGSLYAGTDHGRLFINEAQTGVMAWWSMGRWTDRAAREAII
Ga0066700_102883331	3300005559	Soil	MPERCTLDGVVITLIEPQGSLYAGTDHGRLFINEA
Ga0066693_104853012	3300005566	Soil	MTERCTLDGFVITPMEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAII
Ga0066708_107799442	3300005576	Soil	MPERCTLDGFVITLIEPQGSLYAGTDHGRLFINEA
Ga0066905_1017348441	3300005713	Tropical Forest Soil	MPERCTLDGFVITPIEPPGSLYAGTDHGRLFINEAQTGVMAWWSMGRWTDRAAREAI
Ga0066905_1022538111	3300005713	Tropical Forest Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAHAM
Ga0066903_1018683803	3300005764	Tropical Forest Soil	MTERCTLDGFVITPIEPQGSLYAGTDYGRLFINEARTGVMAWWSMGRWTDRAAREAIIAH
Ga0066903_1023591312	3300005764	Tropical Forest Soil	MTKRCTLDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAW
Ga0066903_1039419273	3300005764	Tropical Forest Soil	MTERCTRDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRA
Ga0066903_1052468241	3300005764	Tropical Forest Soil	MAERYTLDGFVITTREPPGAPHAGADRGRLFINEAQTGVMAWWSMGRWANVAAREAVI
Ga0075417_101821113	3300006049	Populus Rhizosphere	MTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDRA
Ga0075432_101348151	3300006058	Populus Rhizosphere	MPERCTLDGFVITPIEPQGSLYAVTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIA
Ga0075431_1001427481	3300006847	Populus Rhizosphere	MPERCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDR
Ga0075420_1007397841	3300006853	Populus Rhizosphere	MPERCTLDGFVITPIEPPGSLYAGTDHGWLFINEAQTGVMAWWSMGRWTDPAAREAIIAHAMTMTL
Ga0099791_104056141	3300007255	Vadose Zone Soil	MTERCTLDGFVITPMEPQGSLHAGTDHGRLFINEAQTGVMAWWSMGRWTDQAAREAIIAHAM
Ga0099793_103333422	3300007258	Vadose Zone Soil	MTERCTLDGFVITPIEPQGSLYAGTDYGRLFINEAQTGVMAWWSMGRWTDRTAREAI
Ga0099829_101792821	3300009038	Vadose Zone Soil	METRYTLDGYVITKIEPKGAPNAGADSGRLFINDARTGVMAWWSMGRWSNLAAR
Ga0099827_111635911	3300009090	Vadose Zone Soil	MPERCTLDGFVITPIEPQGSLYAGTDHGRLFINEAQTGVMAW
Ga0111539_101412256	3300009094	Populus Rhizosphere	MTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEARTGV
Ga0075418_100784204	3300009100	Populus Rhizosphere	MTERCTRDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAH
Ga0099792_101446441	3300009143	Vadose Zone Soil	MTKRCTLDGFVITPMEPQGSRYAGTDHGRLFINEARTGVMAWWSMGR
Ga0114129_101607991	3300009147	Populus Rhizosphere	MPHATWSRAMTERYTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAH
Ga0114129_105651091	3300009147	Populus Rhizosphere	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTG
Ga0114129_106731471	3300009147	Populus Rhizosphere	MPERCTLDGFVITPIEPRGSRYAGTDHGRLFINEARTG
Ga0114129_129616201	3300009147	Populus Rhizosphere	MPHETRSRTMTERCTRDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREA
Ga0111538_100581891	3300009156	Populus Rhizosphere	MTERCTLDGFVITPIEPQGSLYAVTDHGRLFINEARTGVMAWWSM
Ga0075423_131181671	3300009162	Populus Rhizosphere	MPERCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGV
Ga0105249_103740922	3300009553	Switchgrass Rhizosphere	MPHATWSRTMTERCTLDGFVITPMEPPGSLYAGTDHGRLFINEARTGVMAWWSMG
Ga0126384_103023241	3300010046	Tropical Forest Soil	MTERCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDRATR
Ga0126384_104911052	3300010046	Tropical Forest Soil	MTERYTLDGFVITPIEPQGSLYAGTDYGRLFINEARTGVMA
Ga0126384_110587701	3300010046	Tropical Forest Soil	MPERCTLDGFVITPIEPPGSRYAGTDYGRLFINEARTGVMAWWSMGR
Ga0126382_104185861	3300010047	Tropical Forest Soil	MPHATWSRTMTERCTMDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWS
Ga0126370_116132191	3300010358	Tropical Forest Soil	MTERCTLDGFVITPIEPEGSLYAGTDHGRLFINEAQTGVMAWWSM
Ga0126376_102319862	3300010359	Tropical Forest Soil	MPARCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDRA
Ga0126376_102656523	3300010359	Tropical Forest Soil	MPHDTWSCTMPERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWW
Ga0126372_102655691	3300010360	Tropical Forest Soil	MPERCTLDGFVITPIEPQGSRYAGTDHGRLFINEARTGVM
Ga0126372_105212602	3300010360	Tropical Forest Soil	MPERCTLDGFVITPIEPPGSGYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAR
Ga0126372_115109001	3300010360	Tropical Forest Soil	MPTHCTLDGFVITPIEPPGSRYAGTDHGRLFLNEAKTGVMAWWSMGRWTDR
Ga0126372_118024771	3300010360	Tropical Forest Soil	MTERCTLDGFVITPMEPQGSRYAGTDHGRLFINEARTGVMAWWSMGR
Ga0126372_127989121	3300010360	Tropical Forest Soil	MPERCTLDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGR
Ga0126377_100703381	3300010362	Tropical Forest Soil	MPHDTRSRTMPERYTLDGFVITPMEPRGSLYAGTDHGRLFINEARTGVMAWWSM
Ga0126377_116868902	3300010362	Tropical Forest Soil	MTERCTLDGFVITPLEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRWTD
Ga0126377_132123041	3300010362	Tropical Forest Soil	MAERSTLDGFVITPREPPGAPHAGADRGRLFINEAQTGVMAWWSMGRWAN
Ga0126377_132287491	3300010362	Tropical Forest Soil	MPHAAWSRTMTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRWT
Ga0126379_102692401	3300010366	Tropical Forest Soil	MPHEIRSHTMPERCTLDGFVITPIEPQGSLYAGTDHGRLFINEDQTGVLA
Ga0126379_107279793	3300010366	Tropical Forest Soil	MTERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAR
Ga0126379_123777952	3300010366	Tropical Forest Soil	MPARCTLDGFVITPIEPQGSRYAGTDHGRLFINEAR
Ga0126379_136199711	3300010366	Tropical Forest Soil	MPERCTLDGFVITPIEPQGSLYAGTDHGRLFINEAQTGVMAWWSMGRWTDRAAR
Ga0126383_101618291	3300010398	Tropical Forest Soil	MTERCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRW
Ga0126383_103017421	3300010398	Tropical Forest Soil	MPHDTRSRTMTEHCTLDGFVITPIEPQGSRYAGTDHGRLFINEAQTGVMAWWSMGR
Ga0126383_105391832	3300010398	Tropical Forest Soil	MPHATWSRTMPERCTLDGFVITPIEPQGSRYAGTDHGRLFINEAKTGVMAWWSMGRWTDRAARE
Ga0126383_116075872	3300010398	Tropical Forest Soil	MPYDTRSRTMPERCTLDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAII
Ga0126383_117133361	3300010398	Tropical Forest Soil	MPHATWSRTMTERCTLDGFVITPIEPQGSRYAGTDHGRLFINEAQTGVMAWWSMGRWTDRAAREAIIAHAMT
Ga0137388_116750171	3300012189	Vadose Zone Soil	MTERCTLDGFVITPMEPQGSLYAGTDYGRLFINEARTGVMAWWSMGRWTDRAA
Ga0137380_110895832	3300012206	Vadose Zone Soil	MADRYTLDGFVITKMEPPGAPHAGADRGRLLINEAQTGVMAWWSMGR
Ga0137379_109727491	3300012209	Vadose Zone Soil	MTERCTRDGFVITPIEPQGSLYAGTDHGRLFINEAQT
Ga0137371_102199212	3300012356	Vadose Zone Soil	MTERCTLDGFVITPMEPQGSLYAGTDHGRLFINEARTGVMAWWSMGR*
Ga0137360_104386472	3300012361	Vadose Zone Soil	MTERCTRDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRWTD
Ga0137361_108714371	3300012362	Vadose Zone Soil	MPHETRSRTMTERCTRDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRW
Ga0134031_13023901	3300012388	Grasslands Soil	MTERCTLDGFVITPIEPQGSLYAGTDHGRLFLNEAKTGVMAWWSMGRWTDRAAREAIIAHAM
Ga0137395_108774761	3300012917	Vadose Zone Soil	MTERCTLDGFVITPMEPQGSLYAGTDHGRLFINEAQTGVMAWWSMGRWTD
Ga0137396_100918273	3300012918	Vadose Zone Soil	MTKRCTLDGFVITPMEPQGSRYAGTDHGRLFVNEAQTG
Ga0137396_106624292	3300012918	Vadose Zone Soil	MTERCTLDGFVITPMEPQGSLYAGTDYGRLFINEARTGVMAWWS
Ga0137419_110746121	3300012925	Vadose Zone Soil	MTKRCTLDGFVITPMEPQGSLYAGTDHGRLFINEAQT
Ga0126375_104432721	3300012948	Tropical Forest Soil	MPHDTRSHTMTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEAQTGVMAWWS
Ga0126375_112796341	3300012948	Tropical Forest Soil	MPERCTLDGFVITPMEPPGSLYAGTDHGRLFINEARTGVMA
Ga0126375_120018441	3300012948	Tropical Forest Soil	MAERYTLDGFVITTREPPGAPHAGADRGRLFINEAQTGVMAWWSMGRWANV
Ga0126369_104931883	3300012971	Tropical Forest Soil	MPHDTRSRTMPERYTLDGFVITPIEPPGSLSAGTDHGRLFINEARTGVMAWWSM
Ga0126369_110820712	3300012971	Tropical Forest Soil	MPERCTLDGFVITPIEPSGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAHAM
Ga0126369_112033041	3300012971	Tropical Forest Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDR
Ga0126369_124764311	3300012971	Tropical Forest Soil	MTERCTLDGFVITPIEPQGSLSAGTDHGRLFINEARTGVMAWWSMGRWTDRAARE
Ga0126369_128522991	3300012971	Tropical Forest Soil	MMAERCTLDGFVITPIEPAGSRYAGTDRGRLFINEARTGVMAWWSMGRWTDRAAR
Ga0126369_130439901	3300012971	Tropical Forest Soil	MPHEIRSHTMPERCTLDGFVITPIEPQGSLYAGTDHGRLFINEAQTGVMAWWS
Ga0126369_132832401	3300012971	Tropical Forest Soil	MPHAAWSRTMPERCTLDGFVITPIEPQGSLFAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAHAMTM
Ga0134087_107562472	3300012977	Grasslands Soil	MTKRCTLDGFVITPIEPQGSLYAGTDHGRLFINEA
Ga0157375_128789591	3300013308	Miscanthus Rhizosphere	MPHATWSRTMPERCTLDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIA
Ga0134075_102606632	3300014154	Grasslands Soil	MHDPSTLDGYVITKIEPPGALNAGADSGRLFINDAQTGVMAWWSMGRWGNLAARDAV
Ga0182036_113006611	3300016270	Soil	MPKRCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMA
Ga0182041_118246681	3300016294	Soil	MTERCTLDGFVNTPIEPQGSLYAGTDRGRLFINEAQTGVMAWWSMGRWTDRAAREAIIAHAMTMT
Ga0182035_107396221	3300016341	Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFIHEARTGVMAWWSMGRW
Ga0182040_115892581	3300016387	Soil	MTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEA
Ga0182037_110596181	3300016404	Soil	MPERCTLDGFVITPIEPQGSRYAGTDHGRLFINEAQTGVMAWW
Ga0163161_108424962	3300017792	Switchgrass Rhizosphere	MPERCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSMGRW
Ga0184609_100891272	3300018076	Groundwater Sediment	MAARYTLDGFVITQREPTGAPHAGADSGRLFINEAQTGVMAWWSMGRWSSLAAREAVIAQAT
Ga0137408_14891543	3300019789	Vadose Zone Soil	MADRYTLDGFVITKMEPPGAPHAGADRGRLFINEAQTGVMAWWSMGRWANVAVREAVIVQAPP
Ga0210378_101408052	3300021073	Groundwater Sediment	MAARYTLDGFVITQREPTGAPHAGADSGRLFINEAQTGVMAWWSMGRWSSLAIVAQAPPK
Ga0126371_137331861	3300021560	Tropical Forest Soil	MTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEAQTGVMAWWSMGRWTDRAAREAIIAHAM
Ga0209239_12155071	3300026310	Grasslands Soil	MTERCTLDGFVITPMEPQGSLYAGTDHGRLFINEARTGVMAWW
Ga0209874_10705471	3300027577	Groundwater Sand	MADRSTLDGFVITTMEPPGAPNAGADSERLFINEAQTGVMAWWSMGRW
Ga0209466_10627781	3300027646	Tropical Forest Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWW
Ga0209814_103674171	3300027873	Populus Rhizosphere	MPERCTLDGFVITPIEPPGSLYAGTDHGRLFINEAR
Ga0209465_100710901	3300027874	Tropical Forest Soil	MTERCTRDGFVITPIEPQGSRYAGADHGRLFINEARTGVMAW
Ga0209465_101716991	3300027874	Tropical Forest Soil	MTERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRA
Ga0209590_108856791	3300027882	Vadose Zone Soil	MTERCTLDGFVITPMEPQGSLYAGTDYGRLFINEARTGVMAWWSMGRWTDRAAREAIIAHAM
Ga0268265_123927901	3300028380	Switchgrass Rhizosphere	MPERCTLDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRW
Ga0318574_104815052	3300031680	Soil	MPKRCTLDGFVITPIEPPGSLYAGTDHGRLFINEARTGVMAWWSM
Ga0306918_105353103	3300031744	Soil	MTERCTLDGFVITPIEPQGSLYAGTDRGRLFINEAQTGVMAWWSMGRWTDRA
Ga0306918_106684441	3300031744	Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFIHEARTGVMAWWSMG
Ga0306925_114276301	3300031890	Soil	MTERCTLDGFVITPIEPQGSPYAGTDHGRLFINEAQTGV
Ga0318536_102530961	3300031893	Soil	MTERYTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSM
Ga0310913_111631491	3300031945	Soil	MTERYTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWW
Ga0310910_105856352	3300031946	Soil	MTERCTRDGFVITPIEPQGSLYAGTDHGRLFINEARTGVMAWWSMGRW
Ga0310909_105183152	3300031947	Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFIHEARTGVMAWWSMGRWTDRVA
Ga0310909_110557341	3300031947	Soil	MTERCTLDGFVITPIEPQGSLYAGTDRGRLFINEAQTGVMAWWSMGRWTDRAA
Ga0306926_108647571	3300031954	Soil	MTERCTRDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWW
Ga0306926_120535161	3300031954	Soil	MPERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGV
Ga0306922_122306362	3300032001	Soil	MTERYTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAW
Ga0318533_100677594	3300032059	Soil	MTERCTLDGFVITPIEPQGSLYAGTDHGRLFINEAQTGVMAWWSMGRW
Ga0306924_107642603	3300032076	Soil	MTERCTRDGFVITPIEPQGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAARETIVAHAI
Ga0306924_109541911	3300032076	Soil	MPERCTLDGFMITLIEPQGSLYAGTDHGRLFINEAQTGVMAWWS
Ga0306924_122877261	3300032076	Soil	MTERYTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAA
Ga0318518_107218171	3300032090	Soil	MTERCTLDGFVITPIEPPGSRYAGTDHGRLFINEARTGVMAWWSMGRWTDRAAREAIIAHAM
Ga0306920_1025706271	3300032261	Soil	MTERCTLDGFVITPIEPQGSRYAGTDHGRLFINEAQTGVMAWWSMGRWTDRTARETIIAHAM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075808

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences