Metagenome Family F075943

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075943
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	46 residues
Representative Sequence	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ
Number of Associated Samples	87
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.32 %
% of genes near scaffold ends (potentially truncated)	18.64 %
% of genes from short scaffolds (< 2000 bps)	80.51 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.373 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (20.339 % of family members)
Environment Ontology (ENVO)	Unclassified (27.966 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.169 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 30.77% Coil/Unstructured: 69.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF03358	FMN_red	40.68
PF13450	NAD_binding_8	21.19
PF00732	GMC_oxred_N	5.08
PF01266	DAO	2.54
PF11412	DsbC	1.69
PF00903	Glyoxalase	1.69
PF10517	DM13	1.69
PF05199	GMC_oxred_C	1.69
PF12681	Glyoxalase_2	1.69
PF03551	PadR	0.85
PF03703	bPH_2	0.85
PF00034	Cytochrom_C	0.85
PF08281	Sigma70_r4_2	0.85
PF00578	AhpC-TSA	0.85
PF02371	Transposase_20	0.85
PF12704	MacB_PCD	0.85
PF13147	Obsolete Pfam Family	0.85
PF13531	SBP_bac_11	0.85
PF00291	PALP	0.85
PF13442	Cytochrome_CBB3	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	6.78
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.85
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.85
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.85
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.85
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.37 %
Unclassified	root	N/A	7.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.37 %
Unclassified	root	N/A	7.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.37 %
Unclassified	root	N/A	7.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.63 %
Unclassified	root	N/A	7.63 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	38.14 %
Unclassified	root	N/A	7.63 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	6.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.14 %
Unclassified	root	N/A	7.63 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	6.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.85 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.14 %
Unclassified	root	N/A	7.63 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.85 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.14 %
Unclassified	root	N/A	7.63 %
Pseudanabaenaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae	0.85 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.85 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.14 %
Unclassified	root	N/A	7.63 %
unclassified Verrucomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae	0.85 %
Pseudanabaena	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena	0.85 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.14 %
Unclassified	root	N/A	7.63 %
unclassified Pseudanabaena	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena	0.85 %
Verrucomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	0.85 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.14 %
Unclassified	root	N/A	7.63 %
Pseudanabaena sp. PCC 6802	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena → Pseudanabaena sp. PCC 6802	0.85 %
Verrucomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	0.85 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0880874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1149	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11156180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100785240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100787693	All Organisms → cellular organisms → Bacteria	6669	Open in IMG/M
3300000559\|F14TC_103985394	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300000559\|F14TC_105341355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300002558\|JGI25385J37094_10058506	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300002558\|JGI25385J37094_10148684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300003321\|soilH1_10289799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384	Open in IMG/M
3300004463\|Ga0063356_100169065	All Organisms → cellular organisms → Bacteria	2526	Open in IMG/M
3300004463\|Ga0063356_100318139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1943	Open in IMG/M
3300004463\|Ga0063356_100918040	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300004463\|Ga0063356_105041882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300004633\|Ga0066395_10539779	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005172\|Ga0066683_10342154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300005175\|Ga0066673_10272898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	982	Open in IMG/M
3300005177\|Ga0066690_10924602	Not Available	555	Open in IMG/M
3300005186\|Ga0066676_10263882	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300005330\|Ga0070690_101150682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300005332\|Ga0066388_101165589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1313	Open in IMG/M
3300005332\|Ga0066388_103691050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	781	Open in IMG/M
3300005332\|Ga0066388_105909082	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005332\|Ga0066388_107449443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300005332\|Ga0066388_107808489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena → Pseudanabaena sp. PCC 6802	536	Open in IMG/M
3300005336\|Ga0070680_100828826	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300005353\|Ga0070669_101932512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300005354\|Ga0070675_100651485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300005446\|Ga0066686_10018784	All Organisms → cellular organisms → Bacteria	3827	Open in IMG/M
3300005447\|Ga0066689_10900078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300005450\|Ga0066682_10467754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300005458\|Ga0070681_11153503	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300005530\|Ga0070679_101355658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300005552\|Ga0066701_10780938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300005553\|Ga0066695_10111493	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300005554\|Ga0066661_10161058	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300005574\|Ga0066694_10218765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	904	Open in IMG/M
3300005586\|Ga0066691_10186407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1205	Open in IMG/M
3300005713\|Ga0066905_100739966	Not Available	847	Open in IMG/M
3300005764\|Ga0066903_100947531	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300005764\|Ga0066903_108286678	Not Available	531	Open in IMG/M
3300006031\|Ga0066651_10249666	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300006791\|Ga0066653_10080279	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300006796\|Ga0066665_11239711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300006797\|Ga0066659_10176918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1541	Open in IMG/M
3300006800\|Ga0066660_10330505	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300006844\|Ga0075428_101758647	Not Available	646	Open in IMG/M
3300006845\|Ga0075421_100641693	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300006852\|Ga0075433_10066699	All Organisms → cellular organisms → Bacteria	3158	Open in IMG/M
3300006852\|Ga0075433_10086905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2761	Open in IMG/M
3300006854\|Ga0075425_100012752	All Organisms → cellular organisms → Bacteria	9019	Open in IMG/M
3300006854\|Ga0075425_100214275	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300006871\|Ga0075434_100007598	All Organisms → cellular organisms → Bacteria	10037	Open in IMG/M
3300006904\|Ga0075424_100377851	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300009012\|Ga0066710_100024771	All Organisms → cellular organisms → Bacteria	6797	Open in IMG/M
3300009012\|Ga0066710_100073937	All Organisms → cellular organisms → Bacteria	4394	Open in IMG/M
3300009012\|Ga0066710_100119707	All Organisms → cellular organisms → Bacteria	3581	Open in IMG/M
3300009094\|Ga0111539_10430627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1536	Open in IMG/M
3300009147\|Ga0114129_10002857	All Organisms → cellular organisms → Bacteria	24163	Open in IMG/M
3300009147\|Ga0114129_11296939	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300009156\|Ga0111538_11250214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	938	Open in IMG/M
3300009792\|Ga0126374_10208921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1242	Open in IMG/M
3300009792\|Ga0126374_10575460	Not Available	827	Open in IMG/M
3300010043\|Ga0126380_10407573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1012	Open in IMG/M
3300010043\|Ga0126380_10507355	Not Available	927	Open in IMG/M
3300010043\|Ga0126380_11008387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300010046\|Ga0126384_10208047	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300010047\|Ga0126382_11065092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300010047\|Ga0126382_11255730	Not Available	667	Open in IMG/M
3300010358\|Ga0126370_10074301	All Organisms → cellular organisms → Bacteria	2259	Open in IMG/M
3300010358\|Ga0126370_11431372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300010359\|Ga0126376_12687830	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300010360\|Ga0126372_11060114	Not Available	826	Open in IMG/M
3300010362\|Ga0126377_11395834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300010362\|Ga0126377_12776120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300010366\|Ga0126379_13342733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	537	Open in IMG/M
3300010398\|Ga0126383_12236812	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300012202\|Ga0137363_10048364	All Organisms → cellular organisms → Bacteria	3036	Open in IMG/M
3300012203\|Ga0137399_11299544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300012205\|Ga0137362_10124614	All Organisms → cellular organisms → Bacteria	2187	Open in IMG/M
3300012211\|Ga0137377_10627511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1011	Open in IMG/M
3300012514\|Ga0157330_1043890	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300012923\|Ga0137359_10234255	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300012948\|Ga0126375_10355773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1041	Open in IMG/M
3300012948\|Ga0126375_10579233	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300014325\|Ga0163163_11168530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300015371\|Ga0132258_10012723	All Organisms → cellular organisms → Bacteria	17742	Open in IMG/M
3300015371\|Ga0132258_10046851	All Organisms → cellular organisms → Bacteria	9864	Open in IMG/M
3300015371\|Ga0132258_10972082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2145	Open in IMG/M
3300015371\|Ga0132258_11466389	All Organisms → cellular organisms → Bacteria	1723	Open in IMG/M
3300015371\|Ga0132258_12130277	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300015373\|Ga0132257_100796798	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300015374\|Ga0132255_100398327	Not Available	2004	Open in IMG/M
3300015374\|Ga0132255_101516054	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300015374\|Ga0132255_102453477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300016294\|Ga0182041_11299789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300016319\|Ga0182033_11217368	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300018431\|Ga0066655_10591502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300018433\|Ga0066667_10022623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3379	Open in IMG/M
3300021478\|Ga0210402_11810540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300021560\|Ga0126371_10773472	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300021560\|Ga0126371_13347665	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300021560\|Ga0126371_13627245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300025580\|Ga0210138_1078921	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	783	Open in IMG/M
3300025921\|Ga0207652_11574429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300025960\|Ga0207651_11642827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300025961\|Ga0207712_10289596	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300026306\|Ga0209468_1127582	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300026324\|Ga0209470_1029060	All Organisms → cellular organisms → Bacteria	2864	Open in IMG/M
3300026332\|Ga0209803_1032515	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300026343\|Ga0209159_1135377	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300027874\|Ga0209465_10288857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300031057\|Ga0170834_101148778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300031231\|Ga0170824_106644715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1301	Open in IMG/M
3300031446\|Ga0170820_12169262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300031716\|Ga0310813_10208220	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300031720\|Ga0307469_11111108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300031954\|Ga0306926_11895087	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300032261\|Ga0306920_100101538	All Organisms → cellular organisms → Bacteria	4259	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.58%
Host-Associated	Host-Associated	25.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.73%
Plants	Host-Associated → Plants	25.42%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.02%
Marine	Environmental → Aquatic → Marine	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.47%
Loam	Environmental → Terrestrial → Soil → Loam	15.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.54%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.39%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.39%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.69%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_08808742	2228664022	Soil	MNRHAEKPIKDAHALEGEVVASIHYCPGCGKVEAEIESPEQ
ICChiseqgaiiFebDRAFT_111561802	3300000363	Soil	MHCPNCGTPMNRHAEKPLKTAAEETEVIASIHYCPACGKVEATIEL*
INPhiseqgaiiFebDRAFT_1007852402	3300000364	Soil	MRCPNCGTLMNRHAEKPIKDAHAFEGEVIASIHYCPXXGKVEAVIEDA*
INPhiseqgaiiFebDRAFT_1007876935	3300000364	Soil	MNRHAEKPIKDAHALEGEVVASIHYCPGCGKVEAEIESPEQ*
F14TC_1039853942	3300000559	Soil	MNHHAEKPLKTAEEAEVIASIYYCPACGKVEAAIEG*
F14TC_1053413552	3300000559	Soil	MNRHAEKAIKDPQVPEGEVIASIYCCPKCGKVEAEIEPQDQQFV*
JGI25385J37094_100585062	3300002558	Grasslands Soil	MRCPNCGTLMNRHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL*
JGI25385J37094_101486841	3300002558	Grasslands Soil	MNRHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL*
soilH1_102897991	3300003321	Sugarcane Root And Bulk Soil	MNRHAEKLIKDSRAPEGEVLASIHYCPKCGKVEAELERQEE*
Ga0063356_1001690652	3300004463	Arabidopsis Thaliana Rhizosphere	MRCPSCGAPMNRHAEKSIKDPHVPEGEVIASIHYCPKCGKVEAELEGRINNSSPRE*
Ga0063356_1003181392	3300004463	Arabidopsis Thaliana Rhizosphere	MHCPKCGTLMNRHAEKPLKTAAEETEVIASIHYCPACGKVEATIEP*
Ga0063356_1009180402	3300004463	Arabidopsis Thaliana Rhizosphere	MHCPGCGTLMNRHAEKLVKDPHVPDGEVVASIYYCPKCGKVEAELEPQDQ*
Ga0063356_1050418821	3300004463	Arabidopsis Thaliana Rhizosphere	MHCPSCGALMNRHAEKSIKDPNVPEGEVIASIYYCSQCGKVEAELERQDQ*
Ga0066395_105397792	3300004633	Tropical Forest Soil	MNRHAEKPVKDAHALEGEVIASVHYCPGCGKVEAEIESPDQ*
Ga0066683_103421542	3300005172	Soil	MNRHAEKAIKDPHTPEGDVIASIHYCPGCGKVEAEPEPPNDL*
Ga0066673_102728982	3300005175	Soil	MNRHAEKAIKDPHTPKGEVIASIHYCPGCGKIEAEPEPPNDL*
Ga0066690_109246021	3300005177	Soil	MRCPTCGTVMNRHAEKSVKDPHASEGEAIATIYYCPGCGKVEAEVEPHDP*
Ga0066676_102638822	3300005186	Soil	MRCPNCGTSMNRHAEKAIKDPHTPEGDVIASIHYCPGCGKIEAEPEPPNDL*
Ga0070690_1011506822	3300005330	Switchgrass Rhizosphere	MHCPNCGTPMNRHAEKPLKTAAEETEVIASIHYCPACGKVEATIEP*
Ga0066388_1011655892	3300005332	Tropical Forest Soil	MNRHAEKLIKDSHVPEGEVLASIHYCPKCGKVEAELERQDE*
Ga0066388_1036910502	3300005332	Tropical Forest Soil	MRCPSCGTLMNRHAEKPVKDPHAPEGEVIASIHYCPGCGKVEAVIELQDQ*
Ga0066388_1059090822	3300005332	Tropical Forest Soil	MNRHAEKTVKDPHTPEGEVIASIHYCPGCGKVEAEIESADQ*
Ga0066388_1074494432	3300005332	Tropical Forest Soil	MHCPICGALMNRHAEKPLKSSQASGGEFIASIYYCPQCGK
Ga0066388_1078084892	3300005332	Tropical Forest Soil	VNCPKCGAVMNHHAEKPVKTIRPEEVITAIYYCPACGKVEAAESA*
Ga0070680_1008288261	3300005336	Corn Rhizosphere	MAEKTLRCPNCGAAMNRHAEKPVKDPDVPEGEIIIVIYCCPHCGKVEAETAV*
Ga0070669_1019325122	3300005353	Switchgrass Rhizosphere	MRCPSCDTPMNRHAEKTIKDPHVGEGEGEVVASVYYCPECGKVEAELEREEK*
Ga0070675_1006514852	3300005354	Miscanthus Rhizosphere	MHCPNCGTPMNRHAEKPLKTAAEEAEVIASIHYCPACGKVEATIEP*
Ga0066686_100187845	3300005446	Soil	MRCPNCGTLMNRHAEKPIKDPHVPEGEVIASIHYCPRCGKVEAELEPLLNSEINFRE*
Ga0066689_109000781	3300005447	Soil	MRCPTCGTVMNRHAEKSVKDPHASEGEAIATIYYCPGCGKVEAKVEPQ*
Ga0066682_104677543	3300005450	Soil	MRCPNCGTLMNRHAEKAIKDPHTPKGEVIASIHYCPGCGK
Ga0070681_111535032	3300005458	Corn Rhizosphere	MNRHAEKTVKDPHTPEGEVIASIHYCPACGKVEAEIESTDQ*
Ga0070679_1013556582	3300005530	Corn Rhizosphere	MNRHAEKTVKDPHTPEGEVIASIHYCPACGKVEAEIESTDR*
Ga0066701_107809382	3300005552	Soil	MRCPNCGTLMNRHAEKPIKDPHVPEGEVIASIHYCPRCGKVEAELEPLLNSEIGVAHQNGTLRF
Ga0066695_101114932	3300005553	Soil	MRCPNCGTSMNRHAEKAIKDPHTPEGDVIASIHYCPGCGKVEAEPEPPNDL*
Ga0066661_101610582	3300005554	Soil	MRCPTCGTVMNRHAEKSVKDPHASEGEAMATIYYCPGCGKVEAEVEPHDP*
Ga0066694_102187651	3300005574	Soil	MNGHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL*
Ga0066691_101864071	3300005586	Soil	CGTVMNRHAEKSVKDPHVSEGEAIATIYYCPGCGKVEAKVEPQ*
Ga0066905_1007399661	3300005713	Tropical Forest Soil	NRHAEKLVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ*
Ga0066903_1009475312	3300005764	Tropical Forest Soil	MRCPDCGTLMNRHAEKPIKDAHALEGEVVASIHYCPGCGKVEAEIESPEQ*
Ga0066903_1082866782	3300005764	Tropical Forest Soil	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ*
Ga0066651_102496661	3300006031	Soil	MRCPNCGTSMNRHAEKAIKDPHTPEGDVIASIHYCPGCGKVEAAPEPPNDL*
Ga0066653_100802793	3300006791	Soil	MRCPNCGTLMNGHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL*
Ga0066665_112397112	3300006796	Soil	MNRHAEKTVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ*
Ga0066659_101769182	3300006797	Soil	MRCPNCGTVMNQHAEKSIKDAHSPEGEAIASIYYCPGCGKVEAEVEPHDR*
Ga0066660_103305052	3300006800	Soil	MRCPTCGTVMNRHAEKSVKDPHASEGEAIATIYYVPGCGKVEAEVEPHDP*
Ga0075428_1017586472	3300006844	Populus Rhizosphere	PMNRHAEKPLKTAAEEAEVIASIHYCPACGKVEATIEP*
Ga0075421_1006416933	3300006845	Populus Rhizosphere	MRCPNCGMLMNLHAEKPVKETDAPEGEIIASIHSCPGCGKVESELNPLHDK*
Ga0075433_100666996	3300006852	Populus Rhizosphere	MNRHAEKPIKDAHALEGEVIASIHYCPGCGKVEAEIESPEQ*
Ga0075433_100869053	3300006852	Populus Rhizosphere	MNRHAEKLIKDSHVPEGEVLASIHYCPKCGKVEAELERDDE*
Ga0075425_10001275214	3300006854	Populus Rhizosphere	MRCPSCGTLMNRHAEKLIKDSHVPEGEVLASIHYCPKCGKVEAELERHDE*
Ga0075425_1002142752	3300006854	Populus Rhizosphere	MRCPNCGTLMNRHAEKPIKDAHALEGEVIASIHYCPGCGKVEAEIESPEQ*
Ga0075434_1000075988	3300006871	Populus Rhizosphere	MRCPSCGTLMNRHAEKLIKDSHVPEGEVLASIHYCPKCGKVEAELERDDE*
Ga0075424_1003778513	3300006904	Populus Rhizosphere	MRCPHCGATMNRHAEKPVKEPHVPEGELIASIYYCPACGKVEAELERESTG*
Ga0066710_1000247711	3300009012	Grasslands Soil	MRCPNCGTLMNRHAEKPIKDPHVPEGEVIASIHYCPRCGKVEAELEPLLNSE
Ga0066710_1000739372	3300009012	Grasslands Soil	MRCPSCGTLMNRHAEKLIKDSHAPDGEVLASIHYCPKCGKVETEPERQDE
Ga0066710_1001197075	3300009012	Grasslands Soil	MNRHAEKAIKDPHVPEGEVIASIHYCPACGKVEAELERQDQ
Ga0111539_104306272	3300009094	Populus Rhizosphere	MNRHAEKPLKTAAEETEVIASIHYCPACGKVEATIEP*
Ga0114129_100028577	3300009147	Populus Rhizosphere	MRCPNCGTLMNRHAEKLIKDAHALEGEVVASIHYCPGCGKVEAEIESPEQ*
Ga0114129_112969392	3300009147	Populus Rhizosphere	MNRHAEKTIKDPHVGEGEVIASVYYCPNCGKVEAELEREEE*
Ga0111538_112502141	3300009156	Populus Rhizosphere	MNRHAEKPLKTAAEETEVIASIHYCPACGKVEATIE
Ga0126374_102089213	3300009792	Tropical Forest Soil	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESADQ*
Ga0126374_105754602	3300009792	Tropical Forest Soil	AEKPVKDAHALEGEVIASVHYCPGCGKVEAEIESPDQ*
Ga0126380_104075732	3300010043	Tropical Forest Soil	MNRHAEKPVKDTHAFEGEVIASIHYCPGCGKVESEIESPDQ*
Ga0126380_105073551	3300010043	Tropical Forest Soil	RHAEKPVKDAHALEGEVIAPIHYCPGCGKVEAEIESPDQ*
Ga0126380_110083872	3300010043	Tropical Forest Soil	MNRHAEKPVKDAHAPEGEVIASIHYCPGCGKVEAEIESPDQ*
Ga0126384_102080473	3300010046	Tropical Forest Soil	MHCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ*
Ga0126382_110650922	3300010047	Tropical Forest Soil	MNRHAEKPLKDSRLPEGEVVTSIYYCPNCGKVEAEAEKTA*
Ga0126382_112557301	3300010047	Tropical Forest Soil	MRCPDCGTLMNRHAEKLIKDAHALEGEVVASIHYCPGCGIVEAEIESPEQ*
Ga0126370_100743011	3300010358	Tropical Forest Soil	MNRHAEKPVKDAHAPEGEVIASIHYCPGCGKVEAEI
Ga0126370_114313722	3300010358	Tropical Forest Soil	MHCPNCGTLMNRHAEKPVKDAHALEGEVIASVHYCPGCGKVEAEIESPDQ*
Ga0126376_126878302	3300010359	Tropical Forest Soil	MNRHAEKSVKDANAPEGEVLASIHYRPACGKVEAEIESPDQ*
Ga0126372_110601142	3300010360	Tropical Forest Soil	MNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ*
Ga0126377_113958342	3300010362	Tropical Forest Soil	MRCPECGAPMNRHAEKPVKDSHVPEGEVIASIHFCPKCGKVEAEIEPPGER*
Ga0126377_127761201	3300010362	Tropical Forest Soil	MRCPNCGALMNRHAEKSVKDPHASEGEVITSIHYCPVCGKVEAEPEPEPNSPRSSQDGVPRHI*
Ga0126379_133427332	3300010366	Tropical Forest Soil	MRCPDCGTLMNRHAEKPIKDAHALEGEVVASIHYCPGCGKVEAEIESSEQ*
Ga0126383_122368122	3300010398	Tropical Forest Soil	MNRHAEKPVKDAHAPEGEVIATIHYCPGCGKVEAEIESTDQ*
Ga0137363_100483642	3300012202	Vadose Zone Soil	MRCPNCGTVMNRHAEKSVKDPHASEGEAIATIYYCPGCGKVEAEVEPHDP*
Ga0137399_112995441	3300012203	Vadose Zone Soil	MNRHAEKPIKDSRRPEGEVIASIYYCPDCGKVEAETEPAGDLQ
Ga0137362_101246143	3300012205	Vadose Zone Soil	MNRHAEKSVKDPHASEGEAIATIYYCPGCGKVEAEVEPHDP*
Ga0137377_106275112	3300012211	Vadose Zone Soil	MNRHAEKAIKDPHTPEGDVIASIHYCPGCGKVEAEPEPP
Ga0157330_10438902	3300012514	Soil	MRCPNCGTLMNRHAEKTVKDAHALEGEVIASIHYCPGCGKVEAETESPEQ*
Ga0137359_102342552	3300012923	Vadose Zone Soil	MNRHAEKSVKDPHASEGEAIATIYYCPGCGKVEAKVEPQ*
Ga0126375_103557732	3300012948	Tropical Forest Soil	MNCHAEKPVKDPHAPEGEVIASIYYCPSCGKVEAVIEKDGQESQPVRPEA*
Ga0126375_105792332	3300012948	Tropical Forest Soil	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASVHYCPGCGKVEAEIESPDQ*
Ga0163163_111685303	3300014325	Switchgrass Rhizosphere	MNRHAEKPLKTAAEEAEVIASIHYCPGCGKVEATIEP*
Ga0132258_100127238	3300015371	Arabidopsis Rhizosphere	MNCPNCGALMNRHAEKPIKDPHAPDGEIIASIHYCPKCAKVEAEIDRKQ*
Ga0132258_100468514	3300015371	Arabidopsis Rhizosphere	MNRHAEKPLKDSHVPEGEIIASIHYCPKCGKVEAEIEPAGER*
Ga0132258_109720822	3300015371	Arabidopsis Rhizosphere	MYCPACGALMNWHAEKSIKDPQAPSGEVIASIHYCPECGKVEAEVEPQDQ*
Ga0132258_114663892	3300015371	Arabidopsis Rhizosphere	MRCPNCGTLMNRHAEKPIKDAHALEGEVVASIHYCPGCGKVEAEIESPEQ*
Ga0132258_121302772	3300015371	Arabidopsis Rhizosphere	MNKHAEKPVKGAHAPEGEVLASIHYCPGCGKVEVEIESPDQ*
Ga0132257_1007967982	3300015373	Arabidopsis Rhizosphere	MNRHAEKPIKHAHALEGEVVASIHYCPGCGKVEAEIESPEQ*
Ga0132255_1003983272	3300015374	Arabidopsis Rhizosphere	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIQSPDQ*
Ga0132255_1015160542	3300015374	Arabidopsis Rhizosphere	MRCPNCGTLMNRHAEKPIKDAHAPEGEVVASIHYCPGCGKVEAEIESPEQ*
Ga0132255_1024534772	3300015374	Arabidopsis Rhizosphere	MRCPECGALMNRHAEKPLKDSHVPEGEIIASIHYCPKCGKVEAEIEPAGER*
Ga0182041_112997891	3300016294	Soil	MNRHAEKPVKDAHAPEGEVIASIHYCPGCGKVEAEIESPDQ
Ga0182033_112173682	3300016319	Soil	MNRHAEKPLKDAHALEGEVIASIHYCPGCGKVEAEIESPDHNSSRSWE
Ga0066655_105915021	3300018431	Grasslands Soil	MRCPNCGTLMNRHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL
Ga0066667_100226233	3300018433	Grasslands Soil	MRCPNCGTLMNEHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL
Ga0210402_118105401	3300021478	Soil	MICPQCGTLMNRHAEKPLKDPGSPEGEVLASIHYCPGCGKV
Ga0126371_107734722	3300021560	Tropical Forest Soil	MNRHAEKTVKDPHTPEGEVIASIHYCPGCGKVEAEIESADQ
Ga0126371_133476652	3300021560	Tropical Forest Soil	MNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESPDQ
Ga0126371_136272451	3300021560	Tropical Forest Soil	MNRHAEKSVKDAHAPDGEVLASIHYCPACGKVEAEIESPDQ
Ga0210138_10789212	3300025580	Natural And Restored Wetlands	MNRHAEKPVKDVHALEGEVIASIHYCPGCGKVEAEIESPDQ
Ga0207652_115744291	3300025921	Corn Rhizosphere	MAEKTLRCPNCGAAMNRHAEKPVKDPDVPEGEIIIVIYCCPHCGKVEAETAV
Ga0207651_116428271	3300025960	Switchgrass Rhizosphere	MHCPKCGTLMNRHAEKPLKTAAEEAEVIASIHYCPACGKVEATIE
Ga0207712_102895961	3300025961	Switchgrass Rhizosphere	MRCPSCGAPMNRHAEKSIKDPHVPEGEVIASIHYCPKCGKVEAEL
Ga0209468_11275822	3300026306	Soil	MNRHAEKAIKDPHTPEGDVIASIHYCPGCGKVEAEPEPPNDL
Ga0209470_10290601	3300026324	Soil	MRCPNCGTLMNRHAEKAIKDPHTPKGEVIASIHYCPGCGKIEAEPEPPNDL
Ga0209803_10325152	3300026332	Soil	MNRHAEKAIKDPHTPEGEVIASIHYCPGCGKIEAEPEPPNDL
Ga0209159_11353772	3300026343	Soil	MRCPNCGTSMNRHAEKAIKDPHTPEGDVIASIHYCPGCGKVEAEPEPPNDL
Ga0209465_102888572	3300027874	Tropical Forest Soil	MNRHAEKPVKDAHALEGEVIASVHYCPGCGKVEAEIESPDQ
Ga0170834_1011487782	3300031057	Forest Soil	MRCPHCGGFMNRHAEKLIPDPLAPEGELIASIHYCPACGKIEAELETS
Ga0170824_1066447153	3300031231	Forest Soil	MHCPRCGAFMNCHAEKLIPDPLAPEGELITSIHSCPACGKVEAELETSMPQA
Ga0170820_121692622	3300031446	Forest Soil	MHCPRCGAVMNCHAEKLIPDPLAPEGELITSIHSCPACGKVEAELETSMPQA
Ga0310813_102082202	3300031716	Soil	MNCPNCGALMNRHAEKPIKDPHAPDGEIIASIHYCPKCGKVEAEIDRKQ
Ga0307469_111111082	3300031720	Hardwood Forest Soil	MRCPNCGTSMNPHAEKLIKNPQAPEGEVLASIHYCPGCGKVEAETESSD
Ga0306926_118950872	3300031954	Soil	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPACGKVEAEIESTDQ
Ga0306920_1001015384	3300032261	Soil	MRCPNCGTLMNRHAEKPVKDAHALEGEVIASIHYCPGCGKVEAEIESPDHNSSRSWE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075943

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences