Metagenome / Metatranscriptome Family F076334

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076334
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	65 residues
Representative Sequence	VDTSCQPSDLEQLRATFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR
Number of Associated Samples	75
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.51 %
% of genes near scaffold ends (potentially truncated)	29.66 %
% of genes from short scaffolds (< 2000 bps)	85.59 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.254 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.898 % of family members)
Environment Ontology (ENVO)	Unclassified (42.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.47% β-sheet: 21.28% Coil/Unstructured: 54.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00392	GntR	39.83
PF00932	LTD	2.54
PF00589	Phage_integrase	2.54
PF00805	Pentapeptide	0.85
PF08044	DUF1707	0.85
PF01977	UbiD	0.85
PF02706	Wzz	0.85
PF13847	Methyltransf_31	0.85
PF13432	TPR_16	0.85
PF01872	RibD_C	0.85
PF01625	PMSR	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.85
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.85
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.85
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.85
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	0.85
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	0.85
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	0.85
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
All Organisms	root	All Organisms	34.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
cellular organisms	root	All Organisms → cellular organisms	34.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.39 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.54 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.54 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.54 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.69 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.85 %
Carbonactinosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.54 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.69 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.85 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.85 %
Carbonactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.54 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.54 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.69 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.85 %
Micromonospora craterilacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora craterilacus	0.85 %
Carbonactinospora thermoautotrophica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02QTX7E	Not Available	512	Open in IMG/M
3300000956\|JGI10216J12902_111729784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2616	Open in IMG/M
3300004633\|Ga0066395_10102062	Not Available	1384	Open in IMG/M
3300004633\|Ga0066395_10411566	Not Available	764	Open in IMG/M
3300005363\|Ga0008090_14824604	Not Available	692	Open in IMG/M
3300005363\|Ga0008090_15204030	Not Available	507	Open in IMG/M
3300005471\|Ga0070698_100448990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1225	Open in IMG/M
3300005471\|Ga0070698_101378210	Not Available	656	Open in IMG/M
3300005764\|Ga0066903_100810595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1676	Open in IMG/M
3300005764\|Ga0066903_101431042	Not Available	1300	Open in IMG/M
3300005764\|Ga0066903_101625292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1227	Open in IMG/M
3300005764\|Ga0066903_101630686	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300005764\|Ga0066903_102714379	Not Available	961	Open in IMG/M
3300005764\|Ga0066903_105370586	Not Available	677	Open in IMG/M
3300005764\|Ga0066903_107094612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	581	Open in IMG/M
3300006175\|Ga0070712_100891871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766	Open in IMG/M
3300006354\|Ga0075021_11066379	Not Available	528	Open in IMG/M
3300006755\|Ga0079222_10103297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora craterilacus	1504	Open in IMG/M
3300006755\|Ga0079222_10501175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	889	Open in IMG/M
3300006755\|Ga0079222_10648190	Not Available	820	Open in IMG/M
3300006804\|Ga0079221_10262828	Not Available	988	Open in IMG/M
3300006804\|Ga0079221_10308356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	933	Open in IMG/M
3300006804\|Ga0079221_10545339	Not Available	766	Open in IMG/M
3300006806\|Ga0079220_10027525	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300006806\|Ga0079220_10259062	Not Available	1047	Open in IMG/M
3300006852\|Ga0075433_11059234	Not Available	706	Open in IMG/M
3300006854\|Ga0075425_100230194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2132	Open in IMG/M
3300006854\|Ga0075425_102500229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300006871\|Ga0075434_101899088	Not Available	601	Open in IMG/M
3300006903\|Ga0075426_11262328	Not Available	560	Open in IMG/M
3300006904\|Ga0075424_100448180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1377	Open in IMG/M
3300006914\|Ga0075436_100072428	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300006954\|Ga0079219_11098495	Not Available	674	Open in IMG/M
3300006954\|Ga0079219_11777301	Not Available	575	Open in IMG/M
3300009162\|Ga0075423_10034403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5154	Open in IMG/M
3300009162\|Ga0075423_10228932	Not Available	1948	Open in IMG/M
3300009162\|Ga0075423_10403509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1435	Open in IMG/M
3300009162\|Ga0075423_11175464	Not Available	818	Open in IMG/M
3300010047\|Ga0126382_10891530	Not Available	768	Open in IMG/M
3300010048\|Ga0126373_10556818	Not Available	1195	Open in IMG/M
3300010048\|Ga0126373_11606294	Not Available	715	Open in IMG/M
3300010358\|Ga0126370_10612050	Not Available	942	Open in IMG/M
3300010361\|Ga0126378_12234864	Not Available	624	Open in IMG/M
3300010361\|Ga0126378_13212176	Not Available	520	Open in IMG/M
3300010362\|Ga0126377_12016873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300010366\|Ga0126379_12155683	Not Available	659	Open in IMG/M
3300010366\|Ga0126379_13538421	Not Available	523	Open in IMG/M
3300010376\|Ga0126381_100051386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5047	Open in IMG/M
3300010376\|Ga0126381_100311412	Not Available	2160	Open in IMG/M
3300010398\|Ga0126383_11175048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	857	Open in IMG/M
3300010398\|Ga0126383_11881604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300010398\|Ga0126383_12197696	Not Available	638	Open in IMG/M
3300010398\|Ga0126383_13448209	Not Available	516	Open in IMG/M
3300012356\|Ga0137371_10701766	Not Available	774	Open in IMG/M
3300012948\|Ga0126375_10555180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	868	Open in IMG/M
3300012971\|Ga0126369_10360575	Not Available	1479	Open in IMG/M
3300012971\|Ga0126369_13012052	Not Available	552	Open in IMG/M
3300015371\|Ga0132258_10479658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3106	Open in IMG/M
3300015371\|Ga0132258_12160367	Not Available	1398	Open in IMG/M
3300015371\|Ga0132258_12480234	Not Available	1298	Open in IMG/M
3300016270\|Ga0182036_10052506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2568	Open in IMG/M
3300016270\|Ga0182036_11126563	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300016270\|Ga0182036_11916008	Not Available	503	Open in IMG/M
3300016319\|Ga0182033_11383644	Not Available	633	Open in IMG/M
3300016341\|Ga0182035_10072298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2432	Open in IMG/M
3300016445\|Ga0182038_12191841	Not Available	501	Open in IMG/M
3300021478\|Ga0210402_11902621	Not Available	521	Open in IMG/M
3300021560\|Ga0126371_10584911	Not Available	1265	Open in IMG/M
3300021560\|Ga0126371_10649437	Not Available	1204	Open in IMG/M
3300021560\|Ga0126371_13291434	Not Available	546	Open in IMG/M
3300021560\|Ga0126371_13887638	Not Available	503	Open in IMG/M
3300025915\|Ga0207693_10308329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1239	Open in IMG/M
3300027787\|Ga0209074_10104223	Not Available	963	Open in IMG/M
3300027874\|Ga0209465_10655122	Not Available	517	Open in IMG/M
3300031543\|Ga0318516_10038861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2548	Open in IMG/M
3300031543\|Ga0318516_10292512	Not Available	941	Open in IMG/M
3300031543\|Ga0318516_10528724	Not Available	676	Open in IMG/M
3300031543\|Ga0318516_10644727	Not Available	603	Open in IMG/M
3300031544\|Ga0318534_10058317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2172	Open in IMG/M
3300031544\|Ga0318534_10095034	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300031544\|Ga0318534_10330623	Not Available	878	Open in IMG/M
3300031544\|Ga0318534_10381204	Not Available	811	Open in IMG/M
3300031545\|Ga0318541_10471532	Not Available	702	Open in IMG/M
3300031546\|Ga0318538_10760211	Not Available	526	Open in IMG/M
3300031640\|Ga0318555_10213831	Not Available	1040	Open in IMG/M
3300031668\|Ga0318542_10248673	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300031679\|Ga0318561_10278134	Not Available	914	Open in IMG/M
3300031680\|Ga0318574_10025941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2912	Open in IMG/M
3300031681\|Ga0318572_10052943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2190	Open in IMG/M
3300031681\|Ga0318572_10393537	Not Available	823	Open in IMG/M
3300031719\|Ga0306917_10056121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2671	Open in IMG/M
3300031736\|Ga0318501_10552893	Not Available	630	Open in IMG/M
3300031747\|Ga0318502_10422706	Not Available	794	Open in IMG/M
3300031748\|Ga0318492_10656577	Not Available	561	Open in IMG/M
3300031763\|Ga0318537_10121373	Not Available	971	Open in IMG/M
3300031765\|Ga0318554_10515687	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300031768\|Ga0318509_10634319	Not Available	595	Open in IMG/M
3300031771\|Ga0318546_10847112	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300031777\|Ga0318543_10028279	Not Available	2159	Open in IMG/M
3300031780\|Ga0318508_1083546	Not Available	876	Open in IMG/M
3300031799\|Ga0318565_10445115	Not Available	627	Open in IMG/M
3300031890\|Ga0306925_10074113	All Organisms → cellular organisms → Bacteria	3584	Open in IMG/M
3300031897\|Ga0318520_11040382	Not Available	518	Open in IMG/M
3300031954\|Ga0306926_10568718	Not Available	1387	Open in IMG/M
3300031954\|Ga0306926_12427160	Not Available	577	Open in IMG/M
3300031959\|Ga0318530_10501641	Not Available	504	Open in IMG/M
3300031981\|Ga0318531_10293903	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300032001\|Ga0306922_12037941	Not Available	558	Open in IMG/M
3300032008\|Ga0318562_10664552	Not Available	600	Open in IMG/M
3300032041\|Ga0318549_10570681	Not Available	508	Open in IMG/M
3300032043\|Ga0318556_10644322	Not Available	552	Open in IMG/M
3300032055\|Ga0318575_10680326	Not Available	520	Open in IMG/M
3300032060\|Ga0318505_10159526	Not Available	1048	Open in IMG/M
3300032066\|Ga0318514_10313275	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300032068\|Ga0318553_10569472	Not Available	593	Open in IMG/M
3300032090\|Ga0318518_10220089	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300032090\|Ga0318518_10692449	Not Available	518	Open in IMG/M
3300032094\|Ga0318540_10149856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1117	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.14%
Host-Associated	Host-Associated	11.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.29%
Plants	Host-Associated → Plants	11.86%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.54%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.42%
Loam	Environmental → Terrestrial → Soil → Loam	11.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.49%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.39%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.54%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.69%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_05451720	2070309004	Green-Waste Compost	VDTSCQPGDLEQLREQFPDWDIEARWTVAGTGPDSRYLLGRKGDVTVSAWTGEDLAAEIRRETGTR
JGI10216J12902_1117297844	3300000956	Soil	MDESSQPSDLTRLREQFPDWEIEARWTVAGTGPYSRYLVASKGGVTLSAWTAGDLAAEIRREPDTR*
Ga0066395_101020622	3300004633	Tropical Forest Soil	VDSSLQPDDLARLREQFPDWNIEARWTVAGTGPDSRYLRASRGGVTVSAWTAQDLAAEIRRETGTR*
Ga0066395_104115661	3300004633	Tropical Forest Soil	MGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTVGDLAAEIRRRTGAH*
Ga0008090_148246042	3300005363	Tropical Rainforest Soil	VDTSCQPDDLARLREQFPAWDIEVKWTVAGTGPDARYLLARKGGLTLSAWTAADLAAEIRRETGAR*
Ga0008090_152040301	3300005363	Tropical Rainforest Soil	VDTSCQPGDLEQLGATFPDWEIESRWTVAGTGPDSRYLLAHKDDLTVTAWTAGDLAAEIRRETGAR*
Ga0070698_1004489901	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDTSCQPSDLEQLRATFPDWAIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAQIRRETGAR*
Ga0070698_1013782101	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VNTSCQPSDLEQLRAAFPDWSIEARWTVAGTGPDSRYLLASRGGVTLSAWTPEDLASEIRRETGAR*
Ga0066903_1008105954	3300005764	Tropical Forest Soil	VEPSCQPDDLAQLREQFPDWDIEARWTVAGTGPDQRYLLAQKGDLTVTAWTAGDLAAEIRRETGAR*
Ga0066903_1014310422	3300005764	Tropical Forest Soil	MDTSCQPDDLARLREQFHDWDIQARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETNAR*
Ga0066903_1016252921	3300005764	Tropical Forest Soil	MNTSCQPDDLAQLRATFPDWAIEARWTVAGTGPDSRYLRASRGGGTVSAWTAEDLAAGIR
Ga0066903_1016306862	3300005764	Tropical Forest Soil	VDISCQPGDLEQLRATFPDWAFESQWVAAGTGPDQRRLHARKGDVTLSAWHAEDLAAGIRREETGQS*
Ga0066903_1027143792	3300005764	Tropical Forest Soil	VDTSCQPGDVEQLQQLFPDWEIEARWTVAGTGPDSRYLRAHKGDVTVTAWTAEDLAAEIRRETGAR*
Ga0066903_1053705862	3300005764	Tropical Forest Soil	MDTSCQPDDLEQLRTTFPDWDIEARWTAAGTGPDQRYLLAQKDDRTVTAWTAGDLAAEIRRETGAR*
Ga0066903_1070946121	3300005764	Tropical Forest Soil	VMTSCQPGDLAQVREQFPDWEIEPHWTVAGTGPDSRYLLAHRGDVTVTAWTAGDLAAEIRRETGR*
Ga0070712_1008918711	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDESCQPSDLAQLRDTFPGWEIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETGAR*
Ga0075021_110663791	3300006354	Watersheds	LSTSCQPDDLAQLREQFPDWEIESRWTVAGTGPDSRYLLAHKDDRTVTAWTAGDLAAKIMRETGA
Ga0079222_101032973	3300006755	Agricultural Soil	VDQSCQSGDLEQLRDMFPDWKIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETGAR*
Ga0079222_105011752	3300006755	Agricultural Soil	MDESSQPSDLVQLRAAFPDWEIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETGAR*
Ga0079222_106481901	3300006755	Agricultural Soil	VDTSCQPSDLEQLRATFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR*
Ga0079221_102628282	3300006804	Agricultural Soil	MDESSQPDDLAQLHAAFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR*
Ga0079221_103083562	3300006804	Agricultural Soil	MDESSQPSDLAQLRHDFPGWKFEARWTVAGTGPDSRYLLTSRGGVTLSAWTPGDLAAEIRRETDAR*
Ga0079221_105453392	3300006804	Agricultural Soil	VNTSCQPSDLEQLRATFPDWKIEARWTVAGTGPDARYLVASRAGVTLSAWTAGDLAAEIRRETGAR*
Ga0079220_100275251	3300006806	Agricultural Soil	MSATDLEQLRATFPDWSIEARWTVAGTGDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR*
Ga0079220_102590622	3300006806	Agricultural Soil	LREKFREWQIEPRRTGQDRPGQRYLRASRDGVTLSAWTPEDLAAEIRQETGAR*
Ga0075433_110592341	3300006852	Populus Rhizosphere	VDQSCQPDDLALLRATFPDWEFEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLAAEIRRETDAR*
Ga0075425_1002301941	3300006854	Populus Rhizosphere	MDESSQPSDLAQLRHDFPGWKIEARWTVAGTGPDSRYLLASRGGVTLSAWTPGDLAAE
Ga0075425_1025002292	3300006854	Populus Rhizosphere	VDSSCQPSDLEQLRDMFPDWSIEARWTVAGTGPDSRYLLASRGGVTLSAWTPGDLAAEIRRE
Ga0075434_1018990881	3300006871	Populus Rhizosphere	MDESSQPSDLAQLRHDFPGWKIEARWTVAGTGPDSRYLLASRGGVTLSAWTPGDLAAEIRRETDAR*
Ga0075426_112623281	3300006903	Populus Rhizosphere	VDQSCQSGDLEQLRDMFPDWKIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETNAR*
Ga0075424_1004481801	3300006904	Populus Rhizosphere	DQSCQPDDLALLRATFPDWEFEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLAAEIRRETDAR*
Ga0075436_1000724283	3300006914	Populus Rhizosphere	VDTSCQPSDLEQLRATFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLTAEIRRETGAR*
Ga0079219_110984952	3300006954	Agricultural Soil	MDTSCQPSDLEQLRATFPDWEFEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLAAEIRRETDAR*
Ga0079219_117773011	3300006954	Agricultural Soil	VQTSCQPSDLELLRHTFPSWSFAAVWTAVASGPDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR*
Ga0075423_100344036	3300009162	Populus Rhizosphere	LRATFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR*
Ga0075423_102289323	3300009162	Populus Rhizosphere	VDQSCQPDDLALLRATFPDWEFEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLAAEIRRETGAR*
Ga0075423_104035091	3300009162	Populus Rhizosphere	VDQSCQSGDLEQLRDMFPDWKIEARWTVAGTGPDSRYLLASRGGVTLSAWTAADLAAEIRRETGAR*
Ga0075423_111754642	3300009162	Populus Rhizosphere	MDESSQPSDLAQLRHDFPGWKIEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLAAEIRRETDAR*
Ga0126382_108915301	3300010047	Tropical Forest Soil	HLQPDDLAQLRSTFPDWEIEARWTVAGTGPDQRYLLAQKDDLTVTAWTAGDLAAEIRRETGAR*
Ga0126373_105568182	3300010048	Tropical Forest Soil	MGESSQPDDLAQLREQFPDWEIEARWTVAGTGPDSRYLLATRGGVTLSAWTAEDLAAEIRRETGAR*
Ga0126373_116062941	3300010048	Tropical Forest Soil	MTSCQPGDLEQLREQFPDWDIEARWTVAGTGPDGRYLLASQGGVTVSAWTPADLAAEIRRETGAR*
Ga0126370_106120501	3300010358	Tropical Forest Soil	MDQSSQQPDGLAQLREQFPDWDIEARWTVAGTGPDSRYLLASRGGVTVSAWTPEDLAAGIRRETGAR*
Ga0126378_122348642	3300010361	Tropical Forest Soil	LPARGAGLAYAGQSDDLARLREQFPDWEIEARWTVAGTGPDSRYLLARKDDVTVSAWTAEDLAAEIRRETGDR*
Ga0126378_132121761	3300010361	Tropical Forest Soil	LQPDDLARLREQFPDWNIEARWTVAGTGPDSRYLRASRGGVTVSAWTAQDLAAEIRRETGTR*
Ga0126377_120168732	3300010362	Tropical Forest Soil	LQPDDVAQLRVQFPDWEIEARWTVAGTGSDSRYLLAHQDDVTVSAWTAEDLAAEIRRETDPH*
Ga0126379_121556831	3300010366	Tropical Forest Soil	VETSCQPGDLEQLRDMFPDWDIEARWTVAGTGPDQRYLLAQKDDLTVTAWTAGDLAAEIRRETGAR*
Ga0126379_135384212	3300010366	Tropical Forest Soil	MNHPAPIPPPGDLEQLRAAFPDWDIEARWTVAGTGPDSRYLLAHKGDVTVSAWTAEDLAAEIRRETGQ*
Ga0126381_1000513863	3300010376	Tropical Forest Soil	MDTSCQPDDLAQLREQFPDWEIEPRWTVAGTGPDSRYLLASKGGVTLSAWTPADLAAEIRRQTGAH*
Ga0126381_1003114125	3300010376	Tropical Forest Soil	LSYGGSPVSTSCQPGDLEQLREQFPDWEIEARWTVAGTGPDARRFLANKDDVTVSAWTPEDLAAEIRRETGAR*
Ga0126383_111750482	3300010398	Tropical Forest Soil	MDESSQQPDDLAQLREVFPDWEIEPRWTVAGTGPDSRYLLAHKGDVTVSAWTPEDLATEIRRETGAH*
Ga0126383_118816042	3300010398	Tropical Forest Soil	LQPDDVAQLRVQFPDWEIEARWTVAGTGSDSRYLLAHQDDVTVSAWTAEDLAAEIRRETGTR*
Ga0126383_121976961	3300010398	Tropical Forest Soil	LQPGDLAQLREQFPDWDIEARWTVAGTGPDSRYLLATRGGVTLSAWTPEDLAAEIRRETGAR*
Ga0126383_134482092	3300010398	Tropical Forest Soil	MTDTIPPSDLERLRATFPDWEFEARWTVAGTGPDSRYLLAARGGVTLSAWTAEDLAAEIRRETDAR*
Ga0137371_107017661	3300012356	Vadose Zone Soil	SPVDSSSQPDDLAQLRDMFPAWEIEARWTVAGTGPDSRYLLASRGGVTVSAGTAEDLAAEIRRGTGAR*
Ga0126375_105551802	3300012948	Tropical Forest Soil	VDTSCQPGDVEQLQQLFPDWEIEARWTVAGTGPDSRYLLAHKDDVTVSAWTAEDLAAEIRRETGGPLI*
Ga0126369_103605751	3300012971	Tropical Forest Soil	LQPDDLARLSEQFPDWNIEARWTVAGTGPDSRYLRASRDGVTLSAWTPEDLAAEIRRETGAR*
Ga0126369_130120522	3300012971	Tropical Forest Soil	VDSSLQPDDLAQLREQFPEWKIETRWTVAGTGPDSRYLLASRGGVTVSAWTAEDLAAEIRRETGAR*
Ga0132258_104796584	3300015371	Arabidopsis Rhizosphere	LRATFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLTAEIRRETGAR*
Ga0132258_121603672	3300015371	Arabidopsis Rhizosphere	MDTSCQPSDLEQLRAAFPDWSIEARWTVAGTGPDARYLLASKAGLTLSAWTAEDLAAEIRRETGAR*
Ga0132258_124802342	3300015371	Arabidopsis Rhizosphere	MGTSCQPSDLEQLRATFPDWSIEARWTVAGTGPDSRYLLASRGGVTVSAWTAEDLAAEISRETDAR*
Ga0182036_100525062	3300016270	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRETGAR
Ga0182036_111265631	3300016270	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLARKDDVTISAWTAEDLAAEIRRETGGR
Ga0182036_119160081	3300016270	Soil	MGTSCQPDDLEQLRAEFPDWDIEARWTAAGTGPDQRYLLAQKDDVIVTAWTAGDLAAEIRRRTGAR
Ga0182033_113836443	3300016319	Soil	MDTSCQPDDLAQLRAQFPDWEIEARWTVAGTGPDSRYLLASRSGVTLSAWTAEDLA
Ga0182035_100722982	3300016341	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLASRGGVTVSAGTAADRTAEIRRETDAR
Ga0182038_121918411	3300016445	Soil	QLREQFPDWDIEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLTAEIRRETDAR
Ga0210402_119026211	3300021478	Soil	VLAHRTGPRDHVYRETITVETSCQSDDLARLRVTFPEWDIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETGAR
Ga0126371_105849111	3300021560	Tropical Forest Soil	MDTSCQSGDLAQLREQFPDWEIEPRWTVAGTGPDARYLLAHKGDVTVSAWTAADLAAEIRRETGAR
Ga0126371_106494372	3300021560	Tropical Forest Soil	VDSSLQPDDLARLREQFPDWNIEARWTVAGTGPDSRYLRASRGGVTVSAWTAQDLAAEIRRETGTR
Ga0126371_132914341	3300021560	Tropical Forest Soil	MGTSCQPGDLEQLREQFPDWDIETRWTVAGSGPDARYFLASKGGVTVHAWTAGDLAAEMRQRDTGAR
Ga0126371_138876382	3300021560	Tropical Forest Soil	VMTSCQPGDLEQLREQFPDWEIEPRWTVAGTGPDSRYLLASRGGVTLTAWTAEDLAAEIRRETDAR
Ga0207693_103083291	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDESCQPSDLAQLRDTFPGWEIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETGAR
Ga0209074_101042231	3300027787	Agricultural Soil	VDQSCQSGDLEQLRDMFPDWKIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETGAR
Ga0209465_106551221	3300027874	Tropical Forest Soil	MGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTVGDLAAEIRRRTGAH
Ga0318516_100388615	3300031543	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRETGTR
Ga0318516_102925121	3300031543	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHKGGVTLSAWTPADLAAEIRRDTGAR
Ga0318516_105287242	3300031543	Soil	GSPVDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHRSGVTLSAWTPADLAAEIRRETNAH
Ga0318516_106447271	3300031543	Soil	TSCQTDDLAWLREQFPDWNIEARWTVAGTGPDSRYLLASRGGVTLSAWTPADLAAEIRRETGTR
Ga0318534_100583172	3300031544	Soil	MGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318534_100950343	3300031544	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHRSGVTLSAWTPADLAAEIRRETNAH
Ga0318534_103306232	3300031544	Soil	LQPDDLAQLRDIFPDWSIEAHWTVAGTGPDSRYLLASRGGVTLSGWTAEDLAAEIRRETNAR
Ga0318534_103812042	3300031544	Soil	MDTSCQPDDLAWLREQFPDWNIEARWTVAGTGPDSRYLLASRGGVTLSAWTPADLAAEIRRETGTR
Ga0318541_104715321	3300031545	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLTAEIRRETDAR
Ga0318538_107602111	3300031546	Soil	ASPMDTSCQPGDLDQLREQFPDWDIEARWTVAGTGPDSRYLLASRGGVTLSAWTAEDLAAEIRRETNAR
Ga0318555_102138312	3300031640	Soil	VDSSCQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHKGGVTLSAWTPADLAAEIRRDTGAR
Ga0318542_102486731	3300031668	Soil	LCKESIPMGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318561_102781342	3300031679	Soil	VDSSLQPDDLAQLRDIFPDWSIEAHWTVAGTGPDSRYLLASRGGVTLSGWTAEDLAAEIRRETNAR
Ga0318574_100259411	3300031680	Soil	IPMGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318572_100529435	3300031681	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLA
Ga0318572_103935372	3300031681	Soil	LEQLRATFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRETGTR
Ga0306917_100561214	3300031719	Soil	MDASCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLAQKDDLTVTAWTAGDLAAEIRRETGTR
Ga0318501_105528932	3300031736	Soil	VDPSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHRSGVTLSAWTPADLAAEIRRETNAH
Ga0318502_104227061	3300031747	Soil	MDPSCQPDDLEQLRAEFPDWDIEARWTAAGTGPDQRYLLAQKDDVIVTAWTAGDLAAEIRRRTGAR
Ga0318492_106565771	3300031748	Soil	PMDTSCQRDDLEQLRAEFPDWAIEARWTATGTGPDQRYLLAQKDDRIVTAWTAGDLAAEIRRESGTR
Ga0318537_101213732	3300031763	Soil	MDASCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRETGTR
Ga0318554_105156871	3300031765	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHKSGVTLSAWTPAD
Ga0318509_106343191	3300031768	Soil	LEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318546_108471121	3300031771	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHRSGVTLSAWTPADLAAEI
Ga0318543_100282792	3300031777	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDLTVTAWTAGDLAAEIRRETGTR
Ga0318508_10835461	3300031780	Soil	MGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLAQKDDLTVTAWTAGDLAAEIRRRTGAH
Ga0318565_104451151	3300031799	Soil	VDSSSQPDDLAQLRATFPDWEIEARWTVAGTGPDSRYLLASRGGVTLSAWTPEDLAAEIRRETGSR
Ga0306925_100741132	3300031890	Soil	MDASCQPDDLGQLRATFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRETGTR
Ga0318520_110403822	3300031897	Soil	VDSSSQSDDLAQLRATFPEWDIESRWTVAGTGPDQRYLLAQKDGRIVTAWTAGDLAAEVRRETEAR
Ga0306926_105687181	3300031954	Soil	VEPSCQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLAHRSGVTLSAWTPADLAAEIRRETNAH
Ga0306926_124271601	3300031954	Soil	PRATDCKESIPMDTSCQRDDLEQLRAEFPDWAIEARWTATGTGPDQRYLLAQKDDRIVTAWTAGDLAAEIRRESGTR
Ga0318530_105016411	3300031959	Soil	CQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRETGTR
Ga0318531_102939032	3300031981	Soil	QPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGA
Ga0306922_120379412	3300032001	Soil	MDTSCQPDDLAWLREQFPDWNIEARWTVAGTGPDSRYLLASRGGVTLSAWTPAD
Ga0318562_106645522	3300032008	Soil	VDSSCQPGDLEWLREQFPEWEIEARWTVAGTGPDSRYLLASWGGVTLSAWTPEDLAAEITRETGAR
Ga0318549_105706811	3300032041	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEI
Ga0318556_106443222	3300032043	Soil	LAQLREQFPDWDIEARWTVAGTGPDSRYLRAHRGGVTVSAWTPEDLAAEVRRETGAR
Ga0318575_106803262	3300032055	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIRRE
Ga0318505_101595261	3300032060	Soil	VDSSLQPDDLAQLREQFPDWDIEARWTVAGTGPDSRYLLASRGGVTVSAWTAADLTAEISGRPTPGDA
Ga0318514_103132751	3300032066	Soil	GTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318553_105694721	3300032068	Soil	ALIPQHPYGFPRGGLCKESIPMGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318518_102200891	3300032090	Soil	KESIPMGTSCQPDDLEQLRATFPDWDIEARWTAAGTGPDQRYLLASKDDLIVTAWTAGDLAAEIRRRTGAH
Ga0318518_106924491	3300032090	Soil	MDASCQPDDLGQLRATFPDWDIEARWTAAGTGPDQRYLLAQKDDLTVTAWTAGDLAAEIRRETGTR
Ga0318540_101498561	3300032094	Soil	MDASCQPDDLEQLRVTFPDWDIEARWTAAGTGPDQRYLLAQKDDVTVTAWTAGDLAAEIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076334

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences