NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F076455

Metagenome / Metatranscriptome Family F076455

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076455
Family Type Metagenome / Metatranscriptome
Number of Sequences 118
Average Sequence Length 60 residues
Representative Sequence MEQETQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAELNRWLATK
Number of Associated Samples 86
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 62.39 %
% of genes near scaffold ends (potentially truncated) 15.25 %
% of genes from short scaffolds (< 2000 bps) 72.03 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.610 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(18.644 % of family members)
Environment Ontology (ENVO) Unclassified
(24.576 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(80.508 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.24%    β-sheet: 0.00%    Coil/Unstructured: 51.76%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 118 Family Scaffolds
PF12860PAS_7 5.08
PF00990GGDEF 5.08
PF00072Response_reg 2.54
PF13545HTH_Crp_2 2.54
PF03707MHYT 2.54
PF00816Histone_HNS 1.69
PF07238PilZ 1.69
PF00196GerE 0.85
PF04392ABC_sub_bind 0.85
PF00293NUDIX 0.85
PF08281Sigma70_r4_2 0.85
PF12680SnoaL_2 0.85
PF13714PEP_mutase 0.85
PF00589Phage_integrase 0.85
PF00563EAL 0.85
PF00313CSD 0.85
PF13531SBP_bac_11 0.85
PF02817E3_binding 0.85
PF07690MFS_1 0.85
PF00216Bac_DNA_binding 0.85
PF01425Amidase 0.85
PF17200sCache_2 0.85
PF13411MerR_1 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 118 Family Scaffolds
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 3.39
COG3300MHYT domain, NO-binding membrane sensorSignal transduction mechanisms [T] 2.54
COG2916DNA-binding protein H-NSTranscription [K] 1.69
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.85
COG0508Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) componentEnergy production and conversion [C] 0.85
COG0776Bacterial nucleoid DNA-binding protein IHF-alphaReplication, recombination and repair [L] 0.85
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 0.85
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.85
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 0.85
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 0.85

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.61 %
UnclassifiedrootN/A3.39 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001405|JGI20186J14852_1006264All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae682Open in IMG/M
3300001471|JGI12712J15308_10108650All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense705Open in IMG/M
3300001593|JGI12635J15846_10235729All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense1185Open in IMG/M
3300001593|JGI12635J15846_10796210All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense542Open in IMG/M
3300001661|JGI12053J15887_10230483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium928Open in IMG/M
3300001664|P5cmW16_1031742All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae986Open in IMG/M
3300002245|JGIcombinedJ26739_100456399All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1155Open in IMG/M
3300002245|JGIcombinedJ26739_101266805All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae628Open in IMG/M
3300005538|Ga0070731_10923501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium578Open in IMG/M
3300005541|Ga0070733_10507211All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae807Open in IMG/M
3300005950|Ga0066787_10067344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium716Open in IMG/M
3300005950|Ga0066787_10070520All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense704Open in IMG/M
3300005993|Ga0080027_10345281All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense596Open in IMG/M
3300005995|Ga0066790_10157179All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae973Open in IMG/M
3300006052|Ga0075029_100512536All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium793Open in IMG/M
3300006638|Ga0075522_10001441All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium17993Open in IMG/M
3300006638|Ga0075522_10009172All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6677Open in IMG/M
3300006638|Ga0075522_10015481All Organisms → cellular organisms → Bacteria → Proteobacteria4909Open in IMG/M
3300006638|Ga0075522_10028058All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii3450Open in IMG/M
3300006638|Ga0075522_10241799All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae894Open in IMG/M
3300006893|Ga0073928_10073100All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2968Open in IMG/M
3300007819|Ga0104322_125287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1389Open in IMG/M
3300007819|Ga0104322_136023All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.1867Open in IMG/M
3300009649|Ga0105855_1160220All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense658Open in IMG/M
3300009650|Ga0105857_1188892All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense592Open in IMG/M
3300009660|Ga0105854_1154657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense742Open in IMG/M
3300009661|Ga0105858_1104965All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense764Open in IMG/M
3300009662|Ga0105856_1179737All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium658Open in IMG/M
3300009662|Ga0105856_1308640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense531Open in IMG/M
3300010371|Ga0134125_12162325All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense605Open in IMG/M
3300010373|Ga0134128_12787336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales539Open in IMG/M
3300010396|Ga0134126_10107558All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3421Open in IMG/M
3300010396|Ga0134126_10380034All Organisms → cellular organisms → Bacteria1643Open in IMG/M
3300010876|Ga0126361_11287527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense620Open in IMG/M
3300010880|Ga0126350_11232679All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium501Open in IMG/M
3300011120|Ga0150983_16411288All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium636Open in IMG/M
3300013772|Ga0120158_10180654All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense1126Open in IMG/M
3300013832|Ga0120132_1056373All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense769Open in IMG/M
3300014167|Ga0181528_10027828All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3226Open in IMG/M
3300014200|Ga0181526_10648805All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium666Open in IMG/M
3300014489|Ga0182018_10388215All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense748Open in IMG/M
3300014489|Ga0182018_10411619All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense722Open in IMG/M
3300014491|Ga0182014_10027560All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4505Open in IMG/M
3300014492|Ga0182013_10079393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense2307Open in IMG/M
3300014492|Ga0182013_10096037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2019Open in IMG/M
3300014495|Ga0182015_10031094All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4120Open in IMG/M
3300014501|Ga0182024_10010600All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium18747Open in IMG/M
3300014501|Ga0182024_10029789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales9416Open in IMG/M
3300014501|Ga0182024_10033119All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae8774Open in IMG/M
3300014501|Ga0182024_10163258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3107Open in IMG/M
3300014501|Ga0182024_10233609Not Available2480Open in IMG/M
3300014501|Ga0182024_10305323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2101Open in IMG/M
3300014501|Ga0182024_10336925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1977Open in IMG/M
3300014501|Ga0182024_10793677All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1155Open in IMG/M
3300014501|Ga0182024_11643397All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium726Open in IMG/M
3300015160|Ga0167642_1006190Not Available2183Open in IMG/M
3300015160|Ga0167642_1008090All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1881Open in IMG/M
3300015206|Ga0167644_1003088All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium10198Open in IMG/M
3300015206|Ga0167644_1125915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense701Open in IMG/M
3300017946|Ga0187879_10045568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense2594Open in IMG/M
3300018035|Ga0187875_10435310All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense699Open in IMG/M
3300018037|Ga0187883_10224682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense961Open in IMG/M
3300018038|Ga0187855_10887594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense520Open in IMG/M
3300018044|Ga0187890_10271776All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense953Open in IMG/M
3300018429|Ga0190272_11543136All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense677Open in IMG/M
3300020582|Ga0210395_10097210All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2176Open in IMG/M
3300021170|Ga0210400_11135742All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium631Open in IMG/M
3300021181|Ga0210388_10000084All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae124081Open in IMG/M
3300021181|Ga0210388_11001011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium717Open in IMG/M
3300021405|Ga0210387_10066625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2935Open in IMG/M
3300021405|Ga0210387_11347836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei615Open in IMG/M
3300021475|Ga0210392_10311464All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP8851131Open in IMG/M
3300021477|Ga0210398_10349064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1207Open in IMG/M
3300021477|Ga0210398_11175238All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885607Open in IMG/M
3300021976|Ga0193742_1076269All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense1280Open in IMG/M
3300025461|Ga0208851_1026164Not Available1101Open in IMG/M
3300025504|Ga0208356_1004146All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3454Open in IMG/M
3300025505|Ga0207929_1078488All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense622Open in IMG/M
3300025509|Ga0208848_1049980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense892Open in IMG/M
3300025544|Ga0208078_1026259All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense1298Open in IMG/M
3300025627|Ga0208220_1075958All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense937Open in IMG/M
3300025633|Ga0208480_1037276All Organisms → cellular organisms → Bacteria → Proteobacteria1332Open in IMG/M
3300025633|Ga0208480_1085750All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense762Open in IMG/M
3300025664|Ga0208849_1002862All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium8902Open in IMG/M
3300025664|Ga0208849_1022593All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2081Open in IMG/M
3300025679|Ga0207933_1141423All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense713Open in IMG/M
3300025862|Ga0209483_1011441All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4915Open in IMG/M
3300025862|Ga0209483_1135961All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1037Open in IMG/M
3300025878|Ga0209584_10274980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense646Open in IMG/M
3300026078|Ga0207702_10000075All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium112303Open in IMG/M
3300026281|Ga0209863_10139006All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium711Open in IMG/M
3300027528|Ga0208985_1039277All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense922Open in IMG/M
3300027535|Ga0209734_1022794All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense1154Open in IMG/M
3300027545|Ga0209008_1076682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense752Open in IMG/M
3300027574|Ga0208982_1001903All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4183Open in IMG/M
3300027575|Ga0209525_1002422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4147Open in IMG/M
3300027587|Ga0209220_1099701All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense762Open in IMG/M
3300027587|Ga0209220_1177838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium545Open in IMG/M
3300027591|Ga0209733_1022155All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1714Open in IMG/M
3300027645|Ga0209117_1072315All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense978Open in IMG/M
3300027648|Ga0209420_1132342All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium692Open in IMG/M
3300027674|Ga0209118_1217150All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense511Open in IMG/M
3300027676|Ga0209333_1040987All Organisms → cellular organisms → Bacteria → Proteobacteria1285Open in IMG/M
3300027867|Ga0209167_10437689All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium714Open in IMG/M
3300027895|Ga0209624_10121566All Organisms → cellular organisms → Bacteria → Proteobacteria1715Open in IMG/M
3300027898|Ga0209067_10474336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.708Open in IMG/M
3300027908|Ga0209006_10662458All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense857Open in IMG/M
3300027908|Ga0209006_10856884All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense732Open in IMG/M
3300030007|Ga0311338_11559643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense606Open in IMG/M
3300030399|Ga0311353_10808492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense799Open in IMG/M
3300030503|Ga0311370_10765719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1119Open in IMG/M
3300030503|Ga0311370_11165446All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium839Open in IMG/M
3300030617|Ga0311356_11484915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium613Open in IMG/M
3300031708|Ga0310686_111274364All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2439Open in IMG/M
3300031708|Ga0310686_118088473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1431Open in IMG/M
3300031711|Ga0265314_10009153All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium8405Open in IMG/M
3300033822|Ga0334828_083559All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium810Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil18.64%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil16.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.63%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost7.63%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil5.08%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.24%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.39%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.39%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil3.39%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.54%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.54%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost2.54%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog2.54%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil2.54%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa2.54%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.69%
Permafrost SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil1.69%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil1.69%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.69%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.85%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.85%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.85%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001405Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012EnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300001664Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembledEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005950Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007819Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009649Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059EnvironmentalOpen in IMG/M
3300009650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061EnvironmentalOpen in IMG/M
3300009660Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058EnvironmentalOpen in IMG/M
3300009661Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062EnvironmentalOpen in IMG/M
3300009662Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300013772Permafrost microbial communities from Nunavut, Canada - A10_80_0.25MEnvironmentalOpen in IMG/M
3300013832Permafrost microbial communities from Nunavut, Canada - A3_5cm_0MEnvironmentalOpen in IMG/M
3300014167Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015160Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))EnvironmentalOpen in IMG/M
3300015206Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021976Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1EnvironmentalOpen in IMG/M
3300025461Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025504Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025505Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025509Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025544Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025627Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025633Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025664Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025679Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300027528Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027535Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027574Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027648Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300033822Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20186J14852_100626413300001405Arctic Peat SoilVERAAQYRSDSRVWDERATKVIAEARKLPMGERRRAALREAVRLRIAAELNRWLTNK*
JGI12712J15308_1010865023300001471Forest SoilMGAWVMTHETQGPPDTRVWHSRATEAIADARKMPLEDRRRTAIREAVRLRIAAETYRWLATK*
JGI12635J15846_1023572933300001593Forest SoilMEQGTQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
JGI12635J15846_1079621013300001593Forest SoilMTVQNAERLHDSRVWDDLATVVVAEARKMPLGEWRRAALREAGRLHLAAEMNRWLATK*
JGI12053J15887_1023048313300001661Forest SoilVRDLEQETERPSESRVWDERAAAVIAQAREMPPGARRRAALREAGRLRVAAALFRWLTNK
P5cmW16_103174233300001664PermafrostVDQDAQYRSDSRVWDERATEVIGEARKLPMGEKRRAALREAGRLRIAAEVNRWLANK*
JGIcombinedJ26739_10045639923300002245Forest SoilMGAWVMTHETQGPPDTRVWHNRATEVIAEARKMPLGDRRRAAIREAVRLRIAAETYRWLATK*
JGIcombinedJ26739_10126680523300002245Forest SoilMEQESKSLPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRIAAETYRWLATK*
Ga0070731_1092350123300005538Surface SoilMTVQNAEHSSDGRYWDERATELVEKARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0070733_1050721113300005541Surface SoilMEQETQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAELNRWLATK*
Ga0066787_1006734433300005950SoilMTVQNAVHPHDNRFWDDRATKVIAEARKMPLGERRRAVLREAGRLRIAAEMNRWLSTK*
Ga0066787_1007052023300005950SoilMTVQNAEHPPDSRFWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLLTKQGVIG*
Ga0080027_1034528123300005993Prmafrost SoilMTVQNAEHPPDSRLWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0066790_1015717923300005995SoilGLVMEQETQSPPDSRVWDNRATEVIAEARQMPLGEPRRAALREAGRLRIAAETYRWLATK
Ga0075029_10051253613300006052WatershedsMEQDTQQHPPDSRVWDERANEVIAEARKLPPGEQRRAALREAGRLRIAAEMNRWLANK*
Ga0075018_1033015243300006172WatershedsRAWDDRATEIIAEARKMPLGSQRSDALIEAGRLRVAAEMERWLSKK*
Ga0075522_1000144173300006638Arctic Peat SoilMTVQNAEHSPDSRLWDERATEVIAEARKMPLGERRRTALREAGRLRIAAEMNRWLANK*
Ga0075522_10009172123300006638Arctic Peat SoilMEQETQHSPDSRVWDNRATEVIAEARQMPLGERRRAALREAGRLRIAAETYRWLATK*
Ga0075522_1001548173300006638Arctic Peat SoilMTVENAAHPNDSRIWDDRTTEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLTTK*
Ga0075522_1002805853300006638Arctic Peat SoilMEQETQNPPDSRVWDNRATEVIAEARNMPLGDRRRAALREAGRLRVAAETYRWLATK*
Ga0075522_1024179923300006638Arctic Peat SoilMEQEIQNPPDSRVWANRATEVIAEARKMPLGDRRRAALREAGRLRVAAETYRWLATK*
Ga0073928_1007310043300006893Iron-Sulfur Acid SpringMIVEQSEQDLPDSRVWDDRASEVTTEARKMPPGPARRVALREAGRLRVAAEINRWLATK*
Ga0104322_12528753300007819Permafrost SoilMHSGNPSRQRHKAMTVQNAAHQNDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0104322_13602323300007819Permafrost SoilMELIMEQQTQHPPDSRVWDERATEVIAEARKMPPGEQRRAALREAGRLRIAAEMNRWLATK*
Ga0105855_116022013300009649Permafrost SoilMHSGNPSRQRHKAMTVQNAEHPHDSRIWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAELNRWLANK*
Ga0105857_118889213300009650Permafrost SoilMHSGNPSRQRHKAMTVKNAEHPPDSRFWDDRATELLRQARKMPPGERRRAALREAGRLRIAAEMNRWLATK*
Ga0105854_115465713300009660Permafrost SoilMHSGNPSRQRHKAMTVQNAEHPPDSRFWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEINRWLATK*
Ga0105858_110496513300009661Permafrost SoilMHSGNPSRQRHKAMTVKNAEHPPDSRLWDDQATEVIAEARKMPLGERRRAVLREAGRLRIAAEMNRWLATK*
Ga0105856_117973713300009662Permafrost SoilMHSGNPSRQRRKAMTVKNAEHPPDSRFWDDRATEVIAEARKMPLGEQRCAALREAGRLRIAAEMNRWLATK*
Ga0105856_130864013300009662Permafrost SoilMHSGNPSRQRHKAMTVKNAEHPPDSRFWDDRATEVIAEARKMPLEDRRHAALREAGRLRIAAET
Ga0134125_1216232523300010371Terrestrial SoilMEQETQNPPDSRVWDNRATEVVAEARKMPLGDRRRAALREAGRLRVAAETYRWLANK*
Ga0134128_1278733623300010373Terrestrial SoilQPAGICIQMKTLEQETDCPSDSRVWDERAAEVIAEAREMPPGERRRAALREAGRLRVAAALFRWLTNR*
Ga0134126_1010755813300010396Terrestrial SoilVERAAQYRSDSRVWDERATEVIAEARKLPMGERRRAALREAVRLRIAAELNRWLTNK*
Ga0134126_1038003433300010396Terrestrial SoilMKTLEQETDCPSDSRVWDERAAEVIAEAREMPPGVRRRAALREAGRLRVAAALFRWLTNK
Ga0126361_1128752713300010876Boreal Forest SoilMHSGNPSRQRHKAMTVQIAAHPNDSRVWDDRATEVIAEARNMPLGERRRAALREAGRLRIAAEMNRWLTTK*
Ga0126350_1123267923300010880Boreal Forest SoilFMEQGTQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0150983_1641128813300011120Forest SoilMIVEQSEQCLHDSHVWDDRASEVIMEARKMPPGPARRVALREAGRLRVAAEINRWLATK*
Ga0120158_1018065423300013772PermafrostMEQETQKPPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRVAAETYRWLATK*
Ga0120132_105637323300013832PermafrostMEQETQNLPDSRVWDNRATEVIAEARQMPLGERRRAALREAGRLRIAAETYRWLATK*
Ga0181528_1002782843300014167BogVSDLEQETERASDSRVWEDRAADVIAQAREMPPGARRRAALREAGRLRVAAALFRWLTNK
Ga0181526_1064880513300014200BogMAVKQNAEYQLDSRVWDNRATEVIAEARQMPLGDRRRAALREAGRLRVAAETYRWLATK*
Ga0182018_1038821523300014489PalsaMEQETQKPPDSRVWDNRAAEVIAEARQMPLGDRRRAALREAGRLRVAAETYRWLATK*
Ga0182018_1041161923300014489PalsaMTVQNAEHPPDSRFWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLANK*
Ga0182014_1002756033300014491BogMHSGNPSRQRHKAMTVQGAVHPHDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0182013_1007939343300014492BogMEQETQKPPDSRVWDNRATEVIAEARKMPLGGRRRAALREAGRLRVAAETYRWLATK*
Ga0182013_1009603713300014492BogMHSGNPSRQRHKAMTVQSAVHPHDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0182015_1003109433300014495PalsaMEQETQKPPDSRVRDNRATEVIAEARQMPLGERRRAALREAGRLRIAAETYRWLATK*
Ga0182024_10010600193300014501PermafrostMHSGNPSRQRHKAMPVQNAEHPPDSRLWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATKA*
Ga0182024_1002978953300014501PermafrostMQNEAHPNDSRVWDDRATEVIEEARKMPLGERRRAAFREAGRLRIAAEINRWLATK*
Ga0182024_10033119113300014501PermafrostVEPDAQYCTDSRVWDERATEVIAEARKLPMGEKRRAALREAGRLRIAAEMNRWLANK*
Ga0182024_1016325853300014501PermafrostVEQNAQYRPDSRVWDERATEVIAEARKLPMGERRRAALREAGRLRIAAELNRWLTSK*
Ga0182024_1023360923300014501PermafrostMEQETQSPPDSRVWDNRATEVIAEARQMPLGERRRAALREAGRLRIAAETYRWLATK*
Ga0182024_1030532363300014501PermafrostMEQETQDLPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRIAAETYRWLATK*
Ga0182024_1033692543300014501PermafrostMEQETQNLPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRIAAETYRWLATK*
Ga0182024_1079367713300014501PermafrostRPMHSGNPSRQRHKAMTVQNAAHPNDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEINRWLATK*
Ga0182024_1164339713300014501PermafrostMTVQNAAHQNDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK*
Ga0167642_100619023300015160Glacier Forefield SoilMEQKTRHSPDSRVWENRATEVIAEARKMPLGDRRRAALREAGRLRIAAETYRWLASK*
Ga0167642_100809033300015160Glacier Forefield SoilMHSGNPSRQRHKAMTVQNAEHPPDSRFWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLANK*
Ga0167644_1003088113300015206Glacier Forefield SoilMEQETQHPPDSRVWDDQATPGERRRAALRKAGRLRTSAEINRWLAAK*
Ga0167644_112591523300015206Glacier Forefield SoilVEQNAEYQLDSRVWDNRAMEVIAEARQMPVGEKRRAALREAGRLRIAAETYRGLATK*
Ga0187879_1004556863300017946PeatlandMEQETQKPPDSRVWDNRATEVIAEARKMPLGGRRRAALREAGRLRVAAETYRWLATK
Ga0187875_1043531013300018035PeatlandMEQETQKPPDSRVRDNRATEVIAEARQMPLGEQRRAALREAGRLRIAAE
Ga0187883_1022468223300018037PeatlandMEQETQSPPDSRVWDNRATEVIAEARQMPLGERRRAALREAGPLRIAAETYRWLATK
Ga0187855_1088759413300018038PeatlandVEQNAEYQLDSRVWDNRATEVIAEARQMPLGERRRAALREAGRLRIAAETYRWLATK
Ga0187890_1027177623300018044PeatlandMAVEQNAEYQLDSRVWDNRATEVIAEARQMPLGKRRRAVLREAGRLRIAAETYR
Ga0190272_1154313613300018429SoilMHSGNPSLQRHKAMTVQNADHPPDSRFWDDRATEVIEEARKMPLGEQRRAALREAGRLRIAAEINRWLATK
Ga0210395_1009721023300020582SoilMEQETQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAELNRWLATK
Ga0210400_1113574213300021170SoilVELIMEQGTQHPPDSRVWDNRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLAT
Ga0210388_100000841423300021181SoilMTVQNAEHPPDSRLWDDRATEVIAEGRKMPHGERRRAALREAGRLRIAAEMNRWLATK
Ga0210388_1100101113300021181SoilVSDLEQETERASDSRVWEDRAAAVIAQAREMPPGARRRAALREAGRLRVAAALFRWLTNK
Ga0210387_1006662543300021405SoilMIVEQSEQHPPDSRVWDDRASEVITEARKMPPGPARRVALREAGRLRIAAEINRWLATK
Ga0210387_1134783623300021405SoilLEQETERASDSRVWEDRAAEVIAQARKMPPGARRRAALREAGRLRVAAALFRWLTNK
Ga0210392_1031146423300021475SoilVRDLEQETEHASDSRVWEDRAAEVMAQAREMPPGARRRAALREAGRLRVAAALFRWLTNK
Ga0210398_1034906423300021477SoilMEQGTQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK
Ga0210398_1117523813300021477SoilLEQETEHASDSRVWEDRAAEVMAQAREMPPGARRRAALREAGRLRVAAALFRWLTNK
Ga0193742_107626913300021976SoilMTVQNAEHPPDSRFWDDRATEVIEEARKMPLGEQRRAALREAGRLRIAAEINRWLATK
Ga0208851_102616413300025461Arctic Peat SoilMDVKAFGVTTVEQDAERPPDSRAWDERATEVIAQARKMPLGERRQAALREAGRLRIAAEMNRWLATK
Ga0208356_100414663300025504Arctic Peat SoilVERAAQYRSDSRVWDERATKVIAEARKLPMGERRRAALREAVRLRIAAELNRWLTNK
Ga0207929_107848823300025505Arctic Peat SoilVEQNAQYRPDSRVWDERATEVIAEARKLPMGERRRAALREAGRLRIAAELNRWLTSK
Ga0208848_104998023300025509Arctic Peat SoilMTMQNAVHPNDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEINRWLANK
Ga0208078_102625923300025544Arctic Peat SoilMTVQNAEHLHDSRVWDDLATEVIAEARKMPLGEQRRAALREAGRLRIAAEMNRWLANK
Ga0208220_107595813300025627Arctic Peat SoilMEQEIQNPPDSRVWANRATEVIAEARKMPLGDRRRAALREAGRLRVAAETYRWLATK
Ga0208480_103727633300025633Arctic Peat SoilMEQEIQNPPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRVAAETYRWLATK
Ga0208480_108575023300025633Arctic Peat SoilMEQETQHSPDSRVWDNRATEVIAEARQMPLGERRRAALREAGRLRIAAETYRWLATK
Ga0208849_100286283300025664Arctic Peat SoilVDQGAHYRPDSRVWDERATEVIAEARKLPMGERRRAALREAGRLRIATELNRWLTNK
Ga0208849_102259343300025664Arctic Peat SoilVEQDAQNRSDSRVWDERATEVIAEARKLPMGERRRAALREAGRLRIAAELNRWLTNK
Ga0207933_114142323300025679Arctic Peat SoilMEQETQNPPDSRVWDNRATEVIAEARNMPLGDRRRAALREAGRLRVAAETYRWLATK
Ga0209483_101144153300025862Arctic Peat SoilMTVENAAHPNDSRIWDDRTTEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLTTK
Ga0209483_113596133300025862Arctic Peat SoilDTQHSPDSRVWDNRATELIAEARQMPLGERRRAALREAGRLRVAAETYRWLATK
Ga0209584_1027498013300025878Arctic Peat SoilMHSGNPSRQRHKAMTVQNAAHPNDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLANKA
Ga0207702_10000075803300026078Corn RhizosphereMKTLEQETDCPSDSRVWEERAAEVIAEAREMPPGERKRAALREAGRLRVAAALFRWLTNK
Ga0209863_1013900613300026281Prmafrost SoilMHSGNPSRQRHKAMTVNNAEHPPDSRFWDDRATEVIAEARKMPLGERRSAALREAGRLRIAAEINRWLANK
Ga0208985_103927743300027528Forest SoilLEQETERPSESRVWDERAAAVIAQAREMPPGARRRAALREAGRLRVAAALFRW
Ga0209734_102279433300027535Forest SoilVELIMEQGTQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLAT
Ga0209008_107668213300027545Forest SoilMGAWVMTHETQGPPDTRVWHNRATEVIAEARKMPLGDRRRAAIREAVRLRIAAETYRWLATK
Ga0208982_100190323300027574Forest SoilLEQETERPSESRVWDERAAAVIAQAREMPPGARRRAALREAGRLRVAAALFRWLTNK
Ga0209525_100242233300027575Forest SoilMTHETQGPPDTRVWHSRATEAIADARKMPLEDRRRTAIREAVRLRIAAETYRWLATK
Ga0209220_109970123300027587Forest SoilMDQKVQEQPDSRFWDDRATKVIEEARKMPLGERRRAALREAGRLRIAAEVNRWLSAK
Ga0209220_117783823300027587Forest SoilMTVQNAVHPHDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK
Ga0209733_102215523300027591Forest SoilVELIMEQGTQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLHLAAEMNRWLAT
Ga0209117_107231523300027645Forest SoilMEQGTQHPPDSQVWDDRATEVIAEARKMPLGERRRAALREAGRLRVAAEMNRWLATK
Ga0209420_113234213300027648Forest SoilTIIYATGMGAWVMTHETQGPPDTRVWHSRATEAIADARKMPLEDRRRTAIREAVRLRIAAETYRWLATK
Ga0209118_121715013300027674Forest SoilMEQGTQHPPDSRVWDNRATEVIAEARKMPLGDRRRAAIREAVRLRIAAETYR
Ga0209333_104098723300027676Forest SoilMEQETQNLPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRIAAETYRWLATK
Ga0209167_1043768923300027867Surface SoilEIMEQETQHPPDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAELNRWLATK
Ga0209624_1012156633300027895Forest SoilMGAWVMTHETQGPPDTRVWHSRATEAIADARKMPLEDRRRTAIREAVRLRIAAETYRWLATK
Ga0209067_1047433623300027898WatershedsMEQDTQQHPPDSRVWDERANEVIAEARKLPPGEQRRAALREAGRLRIAAEMNRWLANK
Ga0209006_1066245813300027908Forest SoilMTVKNAEPPFDSRFWDDRATEVIAEARKMPLEERRRAALREAGRLRIAAEMNR
Ga0209006_1085688413300027908Forest SoilMERQNLPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRVAAETYRWLATK
Ga0311338_1155964313300030007PalsaMTVQNAEHPPDSRFWDDRATEIIAAARKMPLGDRRRAALREAGRLRIATKTYR
Ga0311353_1080849213300030399PalsaMTVQNAEHPPDSRFWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLANK
Ga0311370_1076571913300030503PalsaHKAMTVQNAEHPPDSRFWDDRATEIIAAARKMPLGDRRRAALREAGRLRIATKTYRWLAT
Ga0311370_1116544613300030503PalsaNPSRQGHKAMTVQNAAHPNDSRVWDDRATKVIAEARKMPLGERRRAALREAGRLRIAAEINRWLATK
Ga0311356_1148491523300030617PalsaAEHPPDSRFWDDRATEIIAAARKMPLGDRRRAALREAGRLRIATKTYRWLATK
Ga0310686_11127436433300031708SoilMEQETQNLPDSRVWDNRATEVIAEARKMPLGDRRRAALREAGRLRIAAETYRSLASK
Ga0310686_11808847323300031708SoilMTHETQGRLDTRVWHSRATEVIADARKMPLEDRRRTAIREAVRLRIAAETYRWLATK
Ga0265314_1000915323300031711RhizosphereMQQDTQHSPDSRVWDNRATEVIAEARQMPLGERRRAALREAGRLRVAAETYRWLATK
Ga0334828_083559_344_5593300033822SoilMHSGNPSRQRHKAMTVQGAVHPHDSRVWDDRATEVIAEARKMPLGERRRAALREAGRLRIAAEMNRWLATK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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