Metagenome Family F077081

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F077081
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	88 residues
Representative Sequence	VSINENGLARRLKHEGVRVGEIIAYRAWEVINPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRKVIWSMAEYGYDP
Number of Associated Samples	62
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.91 %
% of genes near scaffold ends (potentially truncated)	79.49 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (77.778 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (59.829 % of family members)
Environment Ontology (ENVO)	Unclassified (61.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.24% β-sheet: 23.01% Coil/Unstructured: 55.75%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF09140	MipZ	3.42
PF09851	SHOCT	2.56
PF02604	PhdYeFM_antitox	1.71
PF00140	Sigma70_r1_2	1.71
PF04430	DUF498	1.71
PF00313	CSD	0.85
PF06155	GBBH-like_N	0.85
PF05378	Hydant_A_N	0.85
PF13378	MR_MLE_C	0.85
PF13751	DDE_Tnp_1_6	0.85
PF00872	Transposase_mut	0.85
PF03807	F420_oxidored	0.85
PF03992	ABM	0.85
PF13495	Phage_int_SAM_4	0.85
PF09361	Phasin_2	0.85
PF00484	Pro_CA	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	3.42
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.71
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.71
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	1.71
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.71
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	1.71
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.71
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
All Organisms	root	All Organisms	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
cellular organisms	root	All Organisms → cellular organisms	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.13 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.84 %
Thalassobaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae	1.71 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.84 %
Nisaea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Nisaea	1.71 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.84 %
unclassified Nisaea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Nisaea → unclassified Nisaea	1.71 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.84 %
Nisaea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Nisaea → unclassified Nisaea → Nisaea sp.	1.71 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.85 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_121790456	Not Available	1084	Open in IMG/M
3300002914\|JGI25617J43924_10331796	Not Available	526	Open in IMG/M
3300005187\|Ga0066675_10496140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	912	Open in IMG/M
3300005332\|Ga0066388_101725265	Not Available	1109	Open in IMG/M
3300005332\|Ga0066388_103853707	Not Available	765	Open in IMG/M
3300005434\|Ga0070709_11263727	Not Available	595	Open in IMG/M
3300005445\|Ga0070708_100299802	Not Available	1513	Open in IMG/M
3300005445\|Ga0070708_101167523	Not Available	720	Open in IMG/M
3300005471\|Ga0070698_100119128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2600	Open in IMG/M
3300005471\|Ga0070698_100487068	Not Available	1171	Open in IMG/M
3300005552\|Ga0066701_10708852	Not Available	604	Open in IMG/M
3300005556\|Ga0066707_10155204	Not Available	1453	Open in IMG/M
3300005614\|Ga0068856_102096158	Not Available	575	Open in IMG/M
3300005764\|Ga0066903_103179711	Not Available	888	Open in IMG/M
3300005764\|Ga0066903_104078916	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005764\|Ga0066903_105344003	Not Available	678	Open in IMG/M
3300006034\|Ga0066656_10414732	Not Available	873	Open in IMG/M
3300006034\|Ga0066656_10884566	Not Available	572	Open in IMG/M
3300006796\|Ga0066665_11479319	Not Available	529	Open in IMG/M
3300006797\|Ga0066659_11665208	Not Available	537	Open in IMG/M
3300009012\|Ga0066710_101837786	Not Available	912	Open in IMG/M
3300009012\|Ga0066710_103462628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	598	Open in IMG/M
3300009038\|Ga0099829_10066277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2726	Open in IMG/M
3300009089\|Ga0099828_10062665	All Organisms → cellular organisms → Bacteria	3123	Open in IMG/M
3300009089\|Ga0099828_10373528	Not Available	1285	Open in IMG/M
3300009090\|Ga0099827_10143544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Nisaea → unclassified Nisaea → Nisaea sp.	1947	Open in IMG/M
3300010047\|Ga0126382_10451377	Not Available	1019	Open in IMG/M
3300010301\|Ga0134070_10473766	Not Available	504	Open in IMG/M
3300010333\|Ga0134080_10447865	Not Available	605	Open in IMG/M
3300010333\|Ga0134080_10578386	Not Available	544	Open in IMG/M
3300010359\|Ga0126376_12378954	Not Available	576	Open in IMG/M
3300010360\|Ga0126372_10149695	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300011271\|Ga0137393_10984264	Not Available	718	Open in IMG/M
3300012096\|Ga0137389_10399238	Not Available	1174	Open in IMG/M
3300012189\|Ga0137388_11236904	Not Available	685	Open in IMG/M
3300012198\|Ga0137364_11015931	Not Available	626	Open in IMG/M
3300012199\|Ga0137383_10167452	Not Available	1610	Open in IMG/M
3300012199\|Ga0137383_10304210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1168	Open in IMG/M
3300012199\|Ga0137383_10782249	Not Available	697	Open in IMG/M
3300012199\|Ga0137383_11194277	Not Available	547	Open in IMG/M
3300012200\|Ga0137382_11176136	Not Available	546	Open in IMG/M
3300012200\|Ga0137382_11184328	Not Available	543	Open in IMG/M
3300012201\|Ga0137365_10094094	All Organisms → cellular organisms → Bacteria → Proteobacteria	2256	Open in IMG/M
3300012201\|Ga0137365_10335595	Not Available	1118	Open in IMG/M
3300012201\|Ga0137365_10450216	Not Available	948	Open in IMG/M
3300012204\|Ga0137374_10057475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3940	Open in IMG/M
3300012204\|Ga0137374_10517346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	923	Open in IMG/M
3300012204\|Ga0137374_10863751	Not Available	667	Open in IMG/M
3300012206\|Ga0137380_11159762	Not Available	657	Open in IMG/M
3300012206\|Ga0137380_11518920	Not Available	554	Open in IMG/M
3300012207\|Ga0137381_10387937	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300012209\|Ga0137379_10168054	Not Available	2105	Open in IMG/M
3300012209\|Ga0137379_10190443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1964	Open in IMG/M
3300012209\|Ga0137379_10958674	Not Available	760	Open in IMG/M
3300012209\|Ga0137379_11050539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300012209\|Ga0137379_11792732	Not Available	508	Open in IMG/M
3300012210\|Ga0137378_10312315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1462	Open in IMG/M
3300012210\|Ga0137378_10401653	Not Available	1271	Open in IMG/M
3300012210\|Ga0137378_10516457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1102	Open in IMG/M
3300012210\|Ga0137378_10995365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	752	Open in IMG/M
3300012210\|Ga0137378_11469202	Not Available	593	Open in IMG/M
3300012210\|Ga0137378_11630045	Not Available	553	Open in IMG/M
3300012211\|Ga0137377_10169887	Not Available	2092	Open in IMG/M
3300012211\|Ga0137377_10345246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1425	Open in IMG/M
3300012211\|Ga0137377_10661727	Not Available	980	Open in IMG/M
3300012349\|Ga0137387_10292817	Not Available	1177	Open in IMG/M
3300012350\|Ga0137372_10345342	Not Available	1141	Open in IMG/M
3300012350\|Ga0137372_10484287	Not Available	923	Open in IMG/M
3300012350\|Ga0137372_10718646	Not Available	722	Open in IMG/M
3300012350\|Ga0137372_10791489	Not Available	681	Open in IMG/M
3300012350\|Ga0137372_11165536	Not Available	523	Open in IMG/M
3300012351\|Ga0137386_10775494	Not Available	689	Open in IMG/M
3300012353\|Ga0137367_10136169	Not Available	1798	Open in IMG/M
3300012353\|Ga0137367_10385044	Not Available	995	Open in IMG/M
3300012353\|Ga0137367_11161694	Not Available	518	Open in IMG/M
3300012354\|Ga0137366_10414458	Not Available	980	Open in IMG/M
3300012356\|Ga0137371_10011566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	6819	Open in IMG/M
3300012356\|Ga0137371_10522846	Not Available	915	Open in IMG/M
3300012356\|Ga0137371_10732829	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300012356\|Ga0137371_10742602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300012357\|Ga0137384_10224730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Nisaea → unclassified Nisaea → Nisaea sp.	1568	Open in IMG/M
3300012357\|Ga0137384_10241352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1508	Open in IMG/M
3300012357\|Ga0137384_11334090	Not Available	565	Open in IMG/M
3300012357\|Ga0137384_11401663	Not Available	547	Open in IMG/M
3300012359\|Ga0137385_10055991	All Organisms → cellular organisms → Bacteria	3520	Open in IMG/M
3300012359\|Ga0137385_10609374	Not Available	917	Open in IMG/M
3300012359\|Ga0137385_11184081	Not Available	625	Open in IMG/M
3300012359\|Ga0137385_11634872	Not Available	508	Open in IMG/M
3300012360\|Ga0137375_10593925	Not Available	923	Open in IMG/M
3300012532\|Ga0137373_10168738	Not Available	1830	Open in IMG/M
3300012532\|Ga0137373_10702941	Not Available	754	Open in IMG/M
3300012532\|Ga0137373_11198732	Not Available	536	Open in IMG/M
3300012971\|Ga0126369_10957049	Not Available	943	Open in IMG/M
3300012971\|Ga0126369_11600730	Not Available	741	Open in IMG/M
3300016294\|Ga0182041_11417262	Not Available	638	Open in IMG/M
3300016422\|Ga0182039_11234841	Not Available	676	Open in IMG/M
3300018431\|Ga0066655_10336704	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300018431\|Ga0066655_10712721	Not Available	680	Open in IMG/M
3300018431\|Ga0066655_11278195	Not Available	525	Open in IMG/M
3300018433\|Ga0066667_11274303	Not Available	641	Open in IMG/M
3300018468\|Ga0066662_12609392	Not Available	534	Open in IMG/M
3300018482\|Ga0066669_10368630	Not Available	1202	Open in IMG/M
3300025906\|Ga0207699_10522225	Not Available	859	Open in IMG/M
3300025929\|Ga0207664_11663642	Not Available	560	Open in IMG/M
3300026550\|Ga0209474_10640613	Not Available	546	Open in IMG/M
3300027875\|Ga0209283_10196459	Not Available	1340	Open in IMG/M
3300027875\|Ga0209283_10424186	Not Available	865	Open in IMG/M
3300027875\|Ga0209283_10785728	Not Available	587	Open in IMG/M
3300031545\|Ga0318541_10686048	Not Available	572	Open in IMG/M
3300031910\|Ga0306923_12144462	Not Available	562	Open in IMG/M
3300032008\|Ga0318562_10799810	Not Available	540	Open in IMG/M
3300032261\|Ga0306920_101859370	Not Available	848	Open in IMG/M
3300032261\|Ga0306920_102036823	Not Available	803	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.15%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.89%
Loam	Environmental → Terrestrial → Soil → Loam	10.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	67.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	59.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1217904562	3300000956	Soil	MSPNDEDLAARLRHDGIRLGEIIAYRAWRVISQSWFRNGDDRLHSVYMRDYVWHPDEPASGDVRTHGIYSFRDVIRSRDDYGYG*
JGI25617J43924_103317961	3300002914	Grasslands Soil	MPPITIMAVNCNEIARRLKHEGIRAGEIIAYRAWRVIDPSWCDDDHLHSVAMRDYVWHPDKPASGDVRVHGIYSFRDVIRSKQEYGYD
Ga0066675_104961402	3300005187	Soil	MATLLVANQNELAKHLKHDGVRVGEIIAYRAWRVIRPSWFRSGDDRLHSVLMKDYVWQPDHPASGDVRTHGIYSFRDVVRSKQEYWYSVGSAVLLF
Ga0066388_1017252653	3300005332	Tropical Forest Soil	MSPDNEAARTLRHEGIRVGEIIAYRAWRVIVSGWLSKADDFLHSVAMRDYVWYPNRPASGDVRTHGIYSFRNVICSRDEYGYDTGNSEPF
Ga0066388_1038537071	3300005332	Tropical Forest Soil	MSRLLITGNRDQKELAASIKHEGIRVGEIVTYRAWRVMGSGWLIGRDDRLHSILMSDYVWHPDKPASGDVRTHGIYSFRKVIKSMADYG
Ga0070709_112637272	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VVRFLSANAEELADDLKHEGIRAGEIIAYRAWRVMEPGFLCRGDDLLHSVYIRKYVWLPDEPASGDVRTHGIYSFRYVIRYRDEYSYNAYG
Ga0070708_1002998021	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPPITIMTVNCNEIARRLKHEGIRAGEIIAYRAWRVIDPSWCDDDRLHSVAMRDYVWHSNKPASGDVRVHGIYSFRDVIRSKQEYGYDPGVDGPLLLGK
Ga0070708_1011675231	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	TLKHEGVRVGEIIAYRAWRVIDEGWFRSGDDRLHSVLMRDYVWYPDKPASGDVRMYGIYSFRDVIRSTASSGKGL*
Ga0070698_1001191281	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MARAAQTIMSASENRIARHLKHDGFRVGEIIAYRVWRVINRGWLRSGDDRLHSVLMKDYVWHPDEPASGDVRTHGIYSLRDVIRSKEEYYYYSVGSASLGISEEG*
Ga0070698_1004870681	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MINANHEELTRTLKHEGVRVGEIIAYRAWRVINEGWFRSGDDHLHSVLMRDYVWYPDKPASGDLRTYGIYSFRDVIRSKEEY
Ga0066701_107088521	3300005552	Soil	MWFTTVTISVNEPAATLKHDGIRVGEIIAYRAWRVIDSRWFRSGDDRLHSVYMRDYVWHPDEPASGDVTTYGIYS
Ga0066707_101552044	3300005556	Soil	MSPNDEDLAARLKHEGIRAGEIIAYRAWRVIVPGLFRSGGRLHSVHMRDYVWHPDEPASGDVRTHGIYSFREVIR
Ga0068856_1020961581	3300005614	Corn Rhizosphere	VFPVNGEEFTDRLKHEGIRAGEILAYRAWRVISPGCFRNGIELLHSVYMREYVWLPDEPAFGDVETHGIYSFRDVIRSKQDYHYNAYGVLLF
Ga0066903_1031797111	3300005764	Tropical Forest Soil	MVMSPDNEAARTLRHEGIRVGEIIAYRAWRVIVSGWLSKADDFLHSVAMRDYVWYPNRPASGDVRTHGIYSFRNVICS
Ga0066903_1040789163	3300005764	Tropical Forest Soil	MTMRLDDNELAARLKHEGIRAGEIIAYRAWRVMVPGLFRSGDDRRLHSVFMQDYVWQPDEPASGDVRTHGIYSFRDAVRSR
Ga0066903_1053440033	3300005764	Tropical Forest Soil	MRFDDNELAARLKHEGIRAGEIIAYRAWRVIGPRWFRSGDDRRLHSVFMQDYVWQPDEPASGDVRTHGIYSFRDAVRSR
Ga0066656_104147321	3300006034	Soil	MSPGENRIARHLKHDGFRVGEIIAYRAWRVINRGWLRSGDDRLHGVLMEDYVWHLDEPASGDVRTDGVYSCRDVVRSREEYLYFVGAVPLLLGKSKFGAKS*
Ga0066656_108845663	3300006034	Soil	MVMSPNDEDLAARLRHEGIRAGEIIAYRAWRVLINPEGWFRRSSGDRLHSVYMRDYVWHPDQPASGDVQTHGIYSFRDVIRSNDQYGYTSVTDGPLLFGKVK
Ga0066665_114793191	3300006796	Soil	MIIVVMNRNQNELAKSLKHEGIRVGEIIAHRAWRVISPLWPLKGDNRLRSVAMRDYIWHPNRPASGDVRTHGIYSFRDVIRSREDY
Ga0066659_116652081	3300006797	Soil	MSPGENRIARHLKHDGFRVGEIIAYRAWRVINRGWLRSGDDRLHSVLMKDYVWHPDEPASGDVRTHGIYSCRDVVRSREEYLYFVGAAPLLFGKV
Ga0066710_1018377862	3300009012	Grasslands Soil	MWFTTVSISDNELARRLKHEGIRAGEIIAYRAWRVMAPGWFRDGDDRLHSVFMQDYVWHPDEPASGDVTTHGIYSFRNVIRSNHQCGYTSV
Ga0066710_1034626281	3300009012	Grasslands Soil	VPPVIIVVMNRNQNELAKSLKHEGIRVGEIIAHRAWRVISPLWPLKGDNRLRSVAMRDYIWHPNRPASGDVRTHGIYSFRDVIRSREDYGYDPGVDE
Ga0099829_100662771	3300009038	Vadose Zone Soil	MINSNNNELARTLKHEGIRIGEIIAYWAWRVIHPRWFRSGDDRLHSVFVQDYIWHPGEPASGDIQTHGIYSFRDLISSREE*
Ga0099828_100626655	3300009089	Vadose Zone Soil	MINSNNNELARTLKHEGIRIGEIIAYRAWRVIHPRWFRSGDDRLHSVFVQDYIWHPSEPASGDIQTHGIYSFRDLISSREE*
Ga0099828_103735282	3300009089	Vadose Zone Soil	MIIVVMNRNQNELAKSLKHEGIRVGEIIAHRAWAVIQPRWFRSGDDRLHSVLMRDYIWHPDEPASGDVRTHGIYSFQDVIRSKEEYG
Ga0099827_101435443	3300009090	Vadose Zone Soil	MINSNNNELARTLKHEGIRIGEIIAYRAWRVIHPRWFRSGDDRLHSVFVQDYIWHPGEPASGDIQTHGIYSFRDLISSREE*
Ga0126382_104513772	3300010047	Tropical Forest Soil	MSNYIGLPGTLRHEGIRVGEIIAYRAWRVIVPRWLSGGDLLHSIAMRDYVWYPDRPASGDVRTHGIYSFHNVIRSRDDYGYASSRSYSAG*
Ga0134070_104737662	3300010301	Grasslands Soil	MWFTTVSISDNEPAARLKHEGIRAGEIIAYRAWRVMVPGWFRNGDDRLHSVFMQDYVWHPDEPASGDVRTHGIYSFRKVIRSNHQCDYTSIMGGPLLF
Ga0134080_104478651	3300010333	Grasslands Soil	MVMSPNDEDLAARLRHEGIRAGEIIAYRAWMVLINPEGWFRRSSEDRLHSVYMRDYVWHPDQPASGDVRTHGIYSFRRVIRSNEDYGYVKLSDGPL
Ga0134080_105783861	3300010333	Grasslands Soil	MSPGENRIARHLKHDGFRVGEIIAYRAWLVINRGWLRSGDDRLHSVLMKDYVWHPDDPASGDVRTHGIYSCRDVVRSRGEYL
Ga0126376_123789541	3300010359	Tropical Forest Soil	MRARITIMGTDENALAWRLKHEGIRAGEIIAYRAWRVSDPRWFRKGDDHLHSVYMRDYVWHSDEPASGDVRTDGIYSFRDAVRAREYRYDVHD
Ga0126372_101496953	3300010360	Tropical Forest Soil	RTLRHEGIRVGEIIAYRAWRVIVSGWLNKADDFLHSVAMRDYVWYPNRPASGDVRTHGIYSFRNVIRSSSLLKNLEK*
Ga0126379_134792252	3300010366	Tropical Forest Soil	MSARENRTAVRLHHEGIRVGEIVAYRAWRVIEPRWWRAGDDRLHSVLMKDYVWYPNEPASGDVRTHGIYSCRNVIRSAQDYWYSVGRASLLFGKVKIWGEVVEHEWGYRS
Ga0137393_109842641	3300011271	Vadose Zone Soil	MINANHEELTRTLKHGGVRVGEIIAYRAWRVINEGWFRNGYDRLHSVLMKDYVWHPDEPASGDVRTHGIYSCRHVIRSKEEYWYSVGSASLLF
Ga0137389_103992381	3300012096	Vadose Zone Soil	MIVVIMTRNQNELARTLKHEGLRVGEIIAYRAWAVIQPRWFRSGDDRLHSVLMRDYIWHLDEPASGDVRTHGIY
Ga0137388_112369041	3300012189	Vadose Zone Soil	MIIVVMNRNQNELAKSLKHEGIRVGEIIAHRAWAVIQPRWFRSGDDRLHSVLMRDYIWHLDEPASGDVRTHGIYSFQDVIRSKEEYGYDSSVSG
Ga0137364_110159312	3300012198	Vadose Zone Soil	MWFTTVGISDNELAARLRHEGIRAGEIIAYRAWRVSGPCWFRRGDDRLHSVFVEDYAWHPDKPASGNVRTHGIYSFRHVVRSMSECGYTSVRDESPLFGEG*
Ga0137383_101674523	3300012199	Vadose Zone Soil	MSINENGLGRRLKHEGVRVGEIIAYRAWQVIDPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRNVIWSMAEYGYDPGVDE
Ga0137383_103042101	3300012199	Vadose Zone Soil	MVMSPNDEDLAARLKHEGIRAGEIIAYRAWRGLINPEGWFRRSSGDRLHSVYMRDYVWHPDQPASGDVQTHGIYSFRDVIRSNDQY
Ga0137383_107822491	3300012199	Vadose Zone Soil	MSNLVFITPHRDQNELANSLKHEGVRVGEIIAYRAWRVIEPSWSQPGDDRLHSVFVRDYVWPPDEPASGDVKTHGIYSFQDVIC
Ga0137383_111942771	3300012199	Vadose Zone Soil	MMIVPTNFLETAKRVKREGVRAGEIIAYRAWRVIDESWFGDDRLHSVAMRNYVWQLDKPASGDVRTHGIYSFRDVIQSNEEYG
Ga0137382_111761361	3300012200	Vadose Zone Soil	MSPGENRIARHLKHDGFRVGEIIAYRAWRVINRGWLRSGDDRLHSVLMKDYVWHPDEPASGDVRTHGIYSCRDVVRSKKEYWYSVGTASLLFGSVKIWGEVVEHEWGYRSQF
Ga0137382_111843281	3300012200	Vadose Zone Soil	MIMATDDNELTRRLKHEGLRVGEIIAYRAWQVINPRWFRDGNDRLHSVFMRDYVWHPDEPASGDVQTHGIYSFRDVIRSSDQYGYTYVTDGPLL
Ga0137365_100940944	3300012201	Vadose Zone Soil	MFTSNNNELARNLRHDGIRLGEIIAYRAWRVIVPPWFGSNDDRLHSVAMRNYIWYPNKPASGDVRTHGIYSFR
Ga0137365_103355951	3300012201	Vadose Zone Soil	MSINENGLGRRLKHEGVRVGEIIAYRAWQVIDPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRNVIWSMAEYGYDPGVDEPLLFGKV
Ga0137365_104502161	3300012201	Vadose Zone Soil	VSINENGLARRLKHEGVRVGEIIAYRAWQVINPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRNVIWSMAEYGYDPGVDEPLLFGKV
Ga0137374_100574754	3300012204	Vadose Zone Soil	MAMIIIITNRNQNELARSLRHEGIRVGEIIAYRAWRVINPGWFRSGDDRLRSVLMRDYVWHPDEPACGDVRTHGIYSFQEVMRT*
Ga0137374_105173462	3300012204	Vadose Zone Soil	MNASENPIARHLKHDGFRVGEIIAYRAWRVIKPGWLRSGDDHLHSVLIKDYVWHPDKPASGDVRTHGIYS
Ga0137374_108637511	3300012204	Vadose Zone Soil	MTPNCNELARTLKHNGIRVGEIIAYRAWRAIKEGWFRKSEEERLHSVAMRDYIWHLDKPASGDVRTHGIYSFRNVIRSKQE*
Ga0137380_111597621	3300012206	Vadose Zone Soil	VIGFLSANAEELAGTLKHEGIRAGEIIAYRAWRVIGATWFRRGDDWLHSVLMRDYVWLPDKPASGDVKTHGIYSFRHVIRCRDEYRYNAHGILLFGKV*
Ga0137380_115189201	3300012206	Vadose Zone Soil	MVMSPNDEDLAARLRHEGIRVGEIIAYRAWRVLINPEGWFRRSSNDSLHSVYMRDYVWHPDQPASGDVQTHGIYSFRDVIRSNDQYGYTS
Ga0137381_103879373	3300012207	Vadose Zone Soil	MPPITIMAVNCNEIARRLKHEGIRAGEIIAYRAWRVIDPGWCDDDHLHSVAMRDYVWHPDKPASGDVRVHGITRSGT*
Ga0137379_101680545	3300012209	Vadose Zone Soil	MSNLVFITPHRDQNELANSLKHEGVRVGEIIAYRAWRVIEPSWSQPGDDRLHSVFVRDYVWPPDEPASGDVRTHGIYSFRDVICA
Ga0137379_101904434	3300012209	Vadose Zone Soil	KHEGIRIGEIIAYRAWRVIHPRWFRSGDDRLHSVFVQDYIWHPGEPASGDIQTHGIYSFRDLISSREE*
Ga0137379_109586741	3300012209	Vadose Zone Soil	MIMATDDNELARRLKHEGLRVGEVIACRAWRVITPGWLRSGDDRLHSVYMRDYVWHPNEPASGDVRIHGIYSFRHAIRAKEEY
Ga0137379_110505391	3300012209	Vadose Zone Soil	VSINENGLARRLKHEGVRVGEIIAYRAWEVINPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRKVIWSMA
Ga0137379_117927321	3300012209	Vadose Zone Soil	MPNLVFITPHRDQNELANSLKHEGIRVGEIIAYRAWRVVEPSWSRTGDDRLHSVFVKDYVWHPDEPASGDVKTHGIYSFQDVIC
Ga0137378_103123153	3300012210	Vadose Zone Soil	MFTSNNNELARNLKHDGVCVGEIIAYRAWRVIVLPWFDSNDDRLHSVAMRDYVWYPDKPASGDVRTHGIYSFRDVIRSRHEYGYDPCADGPLLFGKV
Ga0137378_104016533	3300012210	Vadose Zone Soil	MFTSNNNELARNLRHDGIRLGEIIAYRAWRVIVPPWFGSNDDRLHSVAMRNYIWYPNKPASGDVRTHGIYSFRDVIRSRHEYGYDPCADGPLLFGKV
Ga0137378_105164571	3300012210	Vadose Zone Soil	MMGIDENELAWRLKHEGIRAGEIVAYRAWRVIAPRWFRDGDDRLHSVYMRDYVWHPGEPASGDVRTHGIYSFRDAVRSREEYR
Ga0137378_109953651	3300012210	Vadose Zone Soil	MSTTENRIARHVKKEGIRVGEIIAYRAWRVIQPGWLRSGDDRLHSVLMKDYVWHPDEPASGYVRTHGIYSCRDV
Ga0137378_114692022	3300012210	Vadose Zone Soil	MFTSNKNELARTLKHDGIRVGEIIAYRAWRVIRPPWFPTSDDHLHSVAMRDYVWYPDKPASGDVRTHGIYSFR
Ga0137378_116300451	3300012210	Vadose Zone Soil	MTSNCNELARTLKPNGIRVGEIIAYRAWRVIKEGWVRKGEEERLHSVAMRDYIWHPDKPASGDVRTHGIYSFRDVIRSKQEYDYDPGVDEPLLFGKVKI*
Ga0137377_101698873	3300012211	Vadose Zone Soil	MSASENRIAKHLKHDGVRVGEIIAYRAWRVIYPWWFRSGDDRLHSVLMKDYVWHPDEPASGNVRTHGIYSFRDVIRSKEE
Ga0137377_103452462	3300012211	Vadose Zone Soil	VSPSTITNRNQNELARALKHEGVRVGEIIAYRAWGVIKPGWFQSSDDRLHSVFVRDYIWHPEEPAWGDVRTHGIYSFR
Ga0137377_106617271	3300012211	Vadose Zone Soil	MPPMMIMTVNHEELARTLKHEGVRVGEIIAYRAWRVINEGWFRSGYDRLHSVLMRDYVWYPDEPASGDVLTYGIYSFRDVIRSKEEY
Ga0137387_102928171	3300012349	Vadose Zone Soil	MSTNDEELAARLKHEGIRAGEIIAYRAWRVIVPGLFRSGGRLHSVHMRDYVWHPDEPASGDVRTHGIYSFREVIRSEEQYGYHASMEGPLVFGKIKIWGE
Ga0137372_103453421	3300012350	Vadose Zone Soil	MVMSTNDEDLAARLRHEGIRVGEIIAYRAWRFLVNPGGWFRRSSDDRLHSVYMRDYVWHLVEPASGDVRTHGIYSFRRV
Ga0137372_104842871	3300012350	Vadose Zone Soil	MTSNCNELARTLKPNGIRVGEIIAYPAWRVIKEGWFRKGEEERLHSVAMRDYIWHPDKPASGDVRTHGIYSFRDVIRSKQEYDYDP
Ga0137372_107186462	3300012350	Vadose Zone Soil	MWFTTVSISDNELARRLKHEGIRAGEIIAYRAWRVMAPGWFRDGDDRLHSVFMQDYVWHPDEPASGDVRTHGIYSFR
Ga0137372_107914891	3300012350	Vadose Zone Soil	MWFTTVGISDNELAARLRHEGIRAGEIIAYRAWRVSGPCWFRRGDDRLHSVFVEDYAWHPDKPASGNVRTHGIYSFRHVVRSMSECGYTSV
Ga0137372_111655362	3300012350	Vadose Zone Soil	MTSNCNELARTLKPNGIRVGEIIAYRAWRAIKEGWFRKSEEERLHSVAMRDYIWHLDKPASGDVRTHGIYSFRNVIRSKQE*
Ga0137386_107754942	3300012351	Vadose Zone Soil	VGEIIAYRAWRVIKPSWPVKGNNCLHSVAMRDYIWHPDKPACGDVRIHGIYSFRDVIRSREEYGYDPGMNEPLLFGKVKIWGEIVE
Ga0137367_101361691	3300012353	Vadose Zone Soil	MTSNCNELARTLKPNGIRVGEIIAYPAWRVIKEGWFRKAEEERLHSVAMRDYIWHPDKPASGDVRTHGIYSFRDVIRSKQEY
Ga0137367_103850441	3300012353	Vadose Zone Soil	MSINENGLGRRLKHEGVRVGEIIAYRAWQVIDPRWFRNDNERLHSVFMRDYVWHPDEPASGDVRTHGIYSFRNVIWSMAEYGYDPGVDE
Ga0137367_108418901	3300012353	Vadose Zone Soil	VFTTVSISDNELAAKVKHEGIRAGEIIAYRAWRVIDPGWFRNGNDRLQSVFMEGYVWHPDEPASGDVRTHGIYSFRHVIRSMAEYGYTSVGDEPLLFGK
Ga0137367_111616941	3300012353	Vadose Zone Soil	MSTNDEELAARLKHEGIRAGEIIAYRAWRVIVPGLFRSGGRLHSVHMRDYVWHPDEPASGDVRTHGIYSFREVIRSAEQYGYYASMEGPLVFGKIKI
Ga0137366_104144583	3300012354	Vadose Zone Soil	MSINENGLGRRLKHEGVRVGEIIAYRAWQVIDPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRNVIWSMAEYGYDPGVDEPLLF
Ga0137371_100115661	3300012356	Vadose Zone Soil	MSINENGLGRRLKHEGVRVGEIIAYRAWQVIDPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRNVIWSMAEYGYDPGVDEPLLFGKVKIWGEIVEHQEGY
Ga0137371_105228461	3300012356	Vadose Zone Soil	MFTSNKNELARTLKHDGIRVEEIIAYRAWRVIRPPWFPTSDDHLHSVAMRDYVWYPDKPASGDVRTHGIYSFRNVIRSRHEYGYDPCADGP
Ga0137371_107328291	3300012356	Vadose Zone Soil	MTINPNHNELARTLKHEGVRVGEIIAYRAWRVIEPGWLRSGDDLLHSVLMKDRVWHPDKPASGDVRTHGIYSYRDVT
Ga0137371_107426021	3300012356	Vadose Zone Soil	VSINENGLARRLKHEGVRVGEIIAYRAWEVINPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRKVIWSMAEYGYDPGVDE
Ga0137384_102247302	3300012357	Vadose Zone Soil	MINSNNNELARTLKHEGIRIGEIIAYRAWRVIHPRWFRSGDDRLHSVFVQDYIWHPGEPASGDIQTHAIYSFRDLISSREE*
Ga0137384_102413521	3300012357	Vadose Zone Soil	MFTSNNNELARNLKHDGVCVGEIIAYRAWRVIVLPWFESNDDRLHSVAMRDYVWYPDKPASGDVRTHGIYSFRDVIRSRHEYGYDPCADGP
Ga0137384_113340901	3300012357	Vadose Zone Soil	MSPGENRIARHLKHDGFRVGEIIAYRAWRVINRGWLRSGDDRLHSVLMKDYVWHPDEPASGDVRTHGIYSCRDVVRSREEYLYFVGAAPLLFGKVKIWGEVVEH
Ga0137384_114016631	3300012357	Vadose Zone Soil	MSIDDNELAWRLKHEGVRAGEIVAYRAWRVLINPGGWFRRSSDDRLHSVYMRDYVWHPDEPASGDVRTHGIYSFRRVIRSNEDYGYVKLGDGPLL
Ga0137385_100559915	3300012359	Vadose Zone Soil	MSASENRIAKHLKHAGVRVGEIIAYRAWRVIYPWWFRSGDDRLHSVLMKDYVWHPDEPASGNVRTHGIYSFRDVIRSKEEYWYCVGAAVWEG*
Ga0137385_106093741	3300012359	Vadose Zone Soil	MFTSNNNELARNLRHDGIRLGEIIAYRAWRVIVPPWFGSNDDRLHSVAMRNYIWYPNKPASGDVRTHGIYSFRDVIRSRHEYGYDPCAD
Ga0137385_111840811	3300012359	Vadose Zone Soil	MINSNNNELARTLKHEGIRIGEIIAYRAWRVIHPRWFRSGDDCLHSVFVQDYIWHPGEPASGDIQTHGIYSFRDLISSREE*
Ga0137385_116348721	3300012359	Vadose Zone Soil	MIVVVINRNQNELARTLKHEGVRVGEIIAYRAWAAIQPRWFRSGDDRLHSVLMRDYVWHPDEPASGDVRTHGIYSFRDVIRSKEEYGYDSSV
Ga0137375_105939251	3300012360	Vadose Zone Soil	MTSNCNELARTLKPNGIRVGEIIAYRAWRVIKEGWFRKSEEERLHSVAMRDYIWHLDKPASGDVRTHGIYSFRNVIRSKQE*
Ga0137373_101687383	3300012532	Vadose Zone Soil	MFTSNNNELARNLRHDGIRLGEIIAYRAWRVIVPPWFGSNDDRLHSVAMRNYIWYPNKPASGDVRTHGIYSFRDVIRSRHEYGYDPCADGPLLFG
Ga0137373_107029411	3300012532	Vadose Zone Soil	VFTTVSISDNELAARVKHEGIRAGEIIAYRAWRVIDPGWFRNGNDRLQSVFMEGYVWHPDEPASGDVRTHGIYSFRHVIRSMAEYGYTSVGDEPLLFGK
Ga0137373_107949702	3300012532	Vadose Zone Soil	MFTSNKNELARTLKHDGIRVGEIIAYRAWRVIRPPWFPTSDDRLHSVAMRDYVWYPDKPASGDVRTHGIYSFRNVIRSRHEYGYDPCADGPLLFGKVKIWGEIVEHEE
Ga0137373_111987321	3300012532	Vadose Zone Soil	VSINENGLARRLKHEGVRVGEIIAYRAWEVINPRWFRNDNDRLHSVFMRDYVWHPDEPASGDVRTHGIYSFRKVIWSMAEYGYDP
Ga0137373_112559562	3300012532	Vadose Zone Soil	MSINENGLGRRLKHEGVRVGEIIAYRAWQVIDPRWFRNDNERLHSVFMRDYVWHPDEPASGDVQTHGIYSFRNVIWSMAEYGYDPGVDEPLLFGKVKIWGEIVEHQEGYRSEFG
Ga0126369_109570491	3300012971	Tropical Forest Soil	MTATMVNDNALAARLKHEGIRAGEIIAYRAWRVIVPSLFRSGDDRLRSVYMRDYVWHPNEPASGDVRAHGIYSFRDVA*
Ga0126369_116007301	3300012971	Tropical Forest Soil	MRADENELAWKLKHEGIRAGEIIAYRAWRAIVPGLLRSGDNRLHSVYMRDYVWHPDEPASGDVRTHGIYSFRDVVRSQEQYGSHASMEGPLLFGKV
Ga0182041_114172621	3300016294	Soil	VVWFPTANPEEAGETLKHEGIRAGEIIAYRAWRVIEPGFLRRGDDLLHSVYMRKYVWRPDEPASGDVKTHGIYSFRDVIRSKQEYSYNA
Ga0182039_112348411	3300016422	Soil	MSTLLITANQYQHELAKLRHEGIRVGEIIAYRAWRVIGPGWLQRRDDRLHSILMSDYVWHPDEPASGDVRTHGIYSF
Ga0066655_103367041	3300018431	Grasslands Soil	MMTVNHEELARTLKHEGVRVGEVIAYRAWRVINEGWFRSGDDRLHSVLMRDYVWYPDEPASGDVRTYGIYSFRDVIRSKEEYGYDPSVGGPL
Ga0066655_107127211	3300018431	Grasslands Soil	NDEELAARLKHEGIRAGEIIAYRAWRVIVPGLFRSGGRLHSVHMRDYVWHPDEPASGDVRTHGIYSFREVIRSEEQYGYHASMEGPEGCEAHS
Ga0066655_112781951	3300018431	Grasslands Soil	VPPVIIVVMNRNQNELAKSLKHEGIRVGEIIAHRAWAVIQPRWFRSGDDRLHSVLMRDYIWYPDEPASGDVRTHGIYSFQY
Ga0066667_112743032	3300018433	Grasslands Soil	MPTLLIIPSPRNQNERARNLRHEGIRIGEITAYRAWRVIEPRWPRKSDNRLHSVYMKDYVWHPDRPASGDVRSHGVYSFGNAIRSR
Ga0066662_126093921	3300018468	Grasslands Soil	MSPGENRIARHLKHDGFRVGEIIAYRAWRVINRGWVRSGDDRLHSVLIKDYVWHLNEPASGDVRTHGIYSCRDVVRSREEYLYFVGATPLLFGKVKIWGE
Ga0066669_103686301	3300018482	Grasslands Soil	MRLFLIVSENQNELARTLRHQGIRVGEIVAYRPWRAIHPASSQSGDDRLRSVDRQDSGWRPNEPASGGAATPGIL
Ga0207699_105222251	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VVRFLSANAEDLADTLNHEGIRAGEIIAYRAWRVIEPGFLRRGDDLLHSVYIRNYVWLPDEPASGDVKTHGIYSFRHVIRCRGEYSYNAYGPLLF
Ga0207664_116636421	3300025929	Agricultural Soil	VVRFLSANAEELADDLKHEGIRAGEIIAYRAWRVMEPGFLCRGDDLLHSVYIRKYVWLPDEPASGDVRTHGIYSFRYVIRYRDEYSYNAYGPLLFGKV
Ga0209474_106406131	3300026550	Soil	MRLFLIVSENQNELARTLRHQGIRVGEIVAYRAWRAIHPAWFQSGDDRLRSVYRQDYVWHPNEPASGDVRTHGIYSFRDVIR
Ga0209283_101964591	3300027875	Vadose Zone Soil	MIIVVMNRNQNELAKSLKHEGIRVGEIIAHRAWAVIQPRWFRSGDDRLHSVLMRDYIWHPDEPASGDVRTHGIYSFQDVIRSK
Ga0209283_104241861	3300027875	Vadose Zone Soil	MIVPTNFLETAKRVKREGVRAGEIIAYRAWRVIDESCSGDDRLHSVAMRNYVWQLDKPASGDVRTHGIYSFRDVIQSNEEYGYDIPGSEPLLFGKVKI
Ga0209283_107857281	3300027875	Vadose Zone Soil	MSASENRIARHLKHDGFRVGEIIAYRAWRVIKPGWLRSGDDRLHSVLMKDYVWHPDEPASGDVRAHGIYSCQD
Ga0318541_106860481	3300031545	Soil	MSAFFLSTNGSELAKRLKHEGIRTGEIIAYRAWRVIVPSLYWSGDDFLHSVQMRDYIWLPDKPASGDVKTHGVYSFRHTIRSMGEYGYNARGVLL
Ga0306923_121444621	3300031910	Soil	VVWFPTANPEEAGETLKHEGIRAGEIIAYRAWRVIEPGFLRRGDDLLHSVYMRKYVWRPDEPASGDVKTHGIYSFRDVIRSKQEYSYNAYGVLLFG
Ga0318562_107998102	3300032008	Soil	LSTNGSELAKRLKHEGIRTGEIIAYRAWRVIVPSLYWSGDDFLHSVQMRDYIWLPDKPASGDVKTHGVYSFRHTIRSMGEYGYNARGVLLFGKVKIWGEI
Ga0306920_1018593702	3300032261	Soil	MSMSGAHELQNELARRFRHGGIRVGEITAFRAWRIIEPTWMQKADDRLHSVYVQDYVWPLDKPAHGDVRTHGIYSFRDVIRC
Ga0306920_1020368231	3300032261	Soil	MTVNDNELAARLKHEGIRAGEIIAYRAWRVIAPGLLRSGDDQRLHSVFMRDYVWSPDEPASGDVRTHGIYSFRDAVRSREEYSYSTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077081

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences