NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F077428

Metagenome / Metatranscriptome Family F077428

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F077428
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 56 residues
Representative Sequence MLSMRTVLMTAAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALA
Number of Associated Samples 104
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.55 %
% of genes near scaffold ends (potentially truncated) 86.32 %
% of genes from short scaffolds (< 2000 bps) 83.76 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (80.342 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(11.966 % of family members)
Environment Ontology (ENVO) Unclassified
(29.060 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.991 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 48.15%    β-sheet: 0.00%    Coil/Unstructured: 51.85%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF13531SBP_bac_11 4.27
PF13520AA_permease_2 2.56
PF04430DUF498 1.71
PF069833-dmu-9_3-mt 1.71
PF00413Peptidase_M10 1.71
PF03724META 0.85
PF13564DoxX_2 0.85
PF01436NHL 0.85
PF00581Rhodanese 0.85
PF05593RHS_repeat 0.85
PF01979Amidohydro_1 0.85
PF04542Sigma70_r2 0.85
PF13180PDZ_2 0.85
PF00596Aldolase_II 0.85
PF03544TonB_C 0.85
PF08327AHSA1 0.85
PF10067DUF2306 0.85
PF04961FTCD_C 0.85
PF01128IspD 0.85
PF13181TPR_8 0.85
PF01699Na_Ca_ex 0.85
PF07883Cupin_2 0.85
PF12697Abhydrolase_6 0.85
PF13777Obsolete Pfam Family 0.85
PF01425Amidase 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG1504Uncharacterized conserved protein, DUF498 domainFunction unknown [S] 1.71
COG2764Zn-dependent glyoxalase, PhnB familyEnergy production and conversion [C] 1.71
COG3737Uncharacterized protein, contains Mth938-like domainFunction unknown [S] 1.71
COG3865Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferaseGeneral function prediction only [R] 1.71
COG5549Predicted Zn-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 1.71
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.85
COG0387Cation (Ca2+/Na+/K+)/H+ antiporter ChaAInorganic ion transport and metabolism [P] 0.85
COG0530Ca2+/Na+ antiporterInorganic ion transport and metabolism [P] 0.85
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.85
COG0746Molybdopterin-guanine dinucleotide biosynthesis protein ACoenzyme transport and metabolism [H] 0.85
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.85
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.85
COG1207Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferaseCell wall/membrane/envelope biogenesis [M] 0.85
COG12112-C-methyl-D-erythritol 4-phosphate cytidylyltransferaseLipid transport and metabolism [I] 0.85
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.85
COG2068CTP:molybdopterin cytidylyltransferase MocACoenzyme transport and metabolism [H] 0.85
COG3187Heat shock protein HslJPosttranslational modification, protein turnover, chaperones [O] 0.85
COG3209Uncharacterized conserved protein RhaS, contains 28 RHS repeatsGeneral function prediction only [R] 0.85
COG3404Formiminotetrahydrofolate cyclodeaminaseAmino acid transport and metabolism [E] 0.85
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.85

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.34 %
UnclassifiedrootN/A19.66 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_105352377All Organisms → cellular organisms → Bacteria → Acidobacteria876Open in IMG/M
3300000787|JGI11643J11755_11218580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia520Open in IMG/M
3300002076|JGI24749J21850_1077724All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300004062|Ga0055500_10079790All Organisms → cellular organisms → Bacteria → Proteobacteria702Open in IMG/M
3300005174|Ga0066680_10383265All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium894Open in IMG/M
3300005180|Ga0066685_10861622All Organisms → cellular organisms → Bacteria → Acidobacteria609Open in IMG/M
3300005294|Ga0065705_10263141All Organisms → cellular organisms → Bacteria → Acidobacteria1155Open in IMG/M
3300005328|Ga0070676_11393939All Organisms → cellular organisms → Bacteria → Acidobacteria537Open in IMG/M
3300005334|Ga0068869_101005881All Organisms → cellular organisms → Bacteria → Acidobacteria726Open in IMG/M
3300005338|Ga0068868_101529690All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium625Open in IMG/M
3300005345|Ga0070692_10137716All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1378Open in IMG/M
3300005345|Ga0070692_10918353All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300005354|Ga0070675_101972928All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes538Open in IMG/M
3300005438|Ga0070701_10410260All Organisms → cellular organisms → Bacteria → Acidobacteria860Open in IMG/M
3300005438|Ga0070701_10761514All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium657Open in IMG/M
3300005440|Ga0070705_101085367All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium654Open in IMG/M
3300005441|Ga0070700_101199188All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium634Open in IMG/M
3300005446|Ga0066686_11010364All Organisms → cellular organisms → Bacteria → Acidobacteria539Open in IMG/M
3300005457|Ga0070662_100086606All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2343Open in IMG/M
3300005468|Ga0070707_100496769All Organisms → cellular organisms → Bacteria1182Open in IMG/M
3300005468|Ga0070707_100795133All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300005468|Ga0070707_101069617All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300005538|Ga0070731_11149863All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300005545|Ga0070695_100693062All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes808Open in IMG/M
3300005549|Ga0070704_100782201All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium852Open in IMG/M
3300005886|Ga0075286_1049775All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium586Open in IMG/M
3300005888|Ga0075289_1070498All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium568Open in IMG/M
3300006046|Ga0066652_100761855All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium924Open in IMG/M
3300006046|Ga0066652_100885683All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300006049|Ga0075417_10232844All Organisms → cellular organisms → Bacteria → Acidobacteria879Open in IMG/M
3300006058|Ga0075432_10438549All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300006237|Ga0097621_100481526All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300006797|Ga0066659_11737604All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300006854|Ga0075425_101042692All Organisms → cellular organisms → Bacteria → Acidobacteria932Open in IMG/M
3300006871|Ga0075434_100321029Not Available1569Open in IMG/M
3300006969|Ga0075419_10358039All Organisms → cellular organisms → Bacteria → Acidobacteria993Open in IMG/M
3300007265|Ga0099794_10712607Not Available535Open in IMG/M
3300009012|Ga0066710_101089140All Organisms → cellular organisms → Bacteria → Acidobacteria1235Open in IMG/M
3300009094|Ga0111539_12127650All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300009143|Ga0099792_10397707All Organisms → cellular organisms → Bacteria → Acidobacteria842Open in IMG/M
3300010043|Ga0126380_11531645All Organisms → cellular organisms → Bacteria → Acidobacteria592Open in IMG/M
3300010047|Ga0126382_11985773All Organisms → cellular organisms → Bacteria → Acidobacteria553Open in IMG/M
3300010325|Ga0134064_10348255All Organisms → cellular organisms → Bacteria → Acidobacteria578Open in IMG/M
3300010358|Ga0126370_10064031Not Available2401Open in IMG/M
3300010358|Ga0126370_10341763All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1206Open in IMG/M
3300010399|Ga0134127_11751013All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae697Open in IMG/M
3300010403|Ga0134123_10001547All Organisms → cellular organisms → Bacteria14982Open in IMG/M
3300012096|Ga0137389_11732912Not Available521Open in IMG/M
3300012200|Ga0137382_11263535All Organisms → cellular organisms → Bacteria → Acidobacteria522Open in IMG/M
3300012203|Ga0137399_11363896All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300012206|Ga0137380_10990670Not Available719Open in IMG/M
3300012358|Ga0137368_10515006All Organisms → cellular organisms → Bacteria → Acidobacteria769Open in IMG/M
3300012917|Ga0137395_10098676All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1938Open in IMG/M
3300012922|Ga0137394_10459164All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1084Open in IMG/M
3300012923|Ga0137359_10833427All Organisms → cellular organisms → Bacteria → Acidobacteria798Open in IMG/M
3300012971|Ga0126369_10819569All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1014Open in IMG/M
3300012971|Ga0126369_13410240All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium521Open in IMG/M
3300014150|Ga0134081_10077006All Organisms → cellular organisms → Bacteria → Acidobacteria1026Open in IMG/M
3300014159|Ga0181530_10602409All Organisms → cellular organisms → Bacteria → Acidobacteria537Open in IMG/M
3300015265|Ga0182005_1203500All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300015372|Ga0132256_100381503All Organisms → cellular organisms → Bacteria → Acidobacteria1508Open in IMG/M
3300015372|Ga0132256_102574417All Organisms → cellular organisms → Bacteria → Acidobacteria609Open in IMG/M
3300015373|Ga0132257_100960366Not Available1074Open in IMG/M
3300016341|Ga0182035_11170676All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia686Open in IMG/M
3300016341|Ga0182035_11541478All Organisms → cellular organisms → Bacteria → Acidobacteria598Open in IMG/M
3300016404|Ga0182037_10210246All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia franconis1515Open in IMG/M
3300016404|Ga0182037_10651331All Organisms → cellular organisms → Bacteria898Open in IMG/M
3300017659|Ga0134083_10081309All Organisms → cellular organisms → Bacteria → Acidobacteria1259Open in IMG/M
3300025321|Ga0207656_10474588All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria634Open in IMG/M
3300025901|Ga0207688_10131514All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1467Open in IMG/M
3300025922|Ga0207646_10484155All Organisms → cellular organisms → Bacteria1115Open in IMG/M
3300025922|Ga0207646_10668612All Organisms → cellular organisms → Bacteria930Open in IMG/M
3300025932|Ga0207690_10743634All Organisms → cellular organisms → Bacteria → Acidobacteria808Open in IMG/M
3300025936|Ga0207670_10105261All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2022Open in IMG/M
3300025945|Ga0207679_10475234All Organisms → cellular organisms → Bacteria → Acidobacteria1112Open in IMG/M
3300025960|Ga0207651_10189449All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1639Open in IMG/M
3300026023|Ga0207677_11440636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium635Open in IMG/M
3300026075|Ga0207708_11142885All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium680Open in IMG/M
3300026088|Ga0207641_10486713All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1196Open in IMG/M
3300026121|Ga0207683_10785959All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes883Open in IMG/M
3300026329|Ga0209375_1030809All Organisms → cellular organisms → Bacteria2896Open in IMG/M
3300027674|Ga0209118_1170460Not Available596Open in IMG/M
3300027835|Ga0209515_10674632All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300027857|Ga0209166_10438888All Organisms → cellular organisms → Bacteria → Acidobacteria675Open in IMG/M
3300027873|Ga0209814_10245882All Organisms → cellular organisms → Bacteria → Acidobacteria775Open in IMG/M
3300027880|Ga0209481_10222233All Organisms → cellular organisms → Bacteria → Acidobacteria947Open in IMG/M
3300029636|Ga0222749_10065991All Organisms → cellular organisms → Bacteria → Acidobacteria1633Open in IMG/M
3300031152|Ga0307501_10028866All Organisms → cellular organisms → Bacteria → Acidobacteria1120Open in IMG/M
3300031573|Ga0310915_11114404All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300031708|Ga0310686_117907783All Organisms → cellular organisms → Bacteria1095Open in IMG/M
3300031716|Ga0310813_10481538All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1081Open in IMG/M
3300031719|Ga0306917_10681831All Organisms → cellular organisms → Bacteria → Acidobacteria808Open in IMG/M
3300031740|Ga0307468_100585197All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium907Open in IMG/M
3300031744|Ga0306918_11106484All Organisms → cellular organisms → Bacteria → Acidobacteria614Open in IMG/M
3300031854|Ga0310904_10129465All Organisms → cellular organisms → Bacteria → Acidobacteria1436Open in IMG/M
3300031896|Ga0318551_10884327All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia521Open in IMG/M
3300031910|Ga0306923_11477647Not Available712Open in IMG/M
3300031910|Ga0306923_11764071All Organisms → cellular organisms → Bacteria → Acidobacteria637Open in IMG/M
3300031912|Ga0306921_10667949All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia franconis1197Open in IMG/M
3300031941|Ga0310912_10946530All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300031954|Ga0306926_10796227All Organisms → cellular organisms → Bacteria → Acidobacteria1140Open in IMG/M
3300032012|Ga0310902_10668667All Organisms → cellular organisms → Bacteria → Acidobacteria696Open in IMG/M
3300032205|Ga0307472_101728876Not Available619Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.97%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.11%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.69%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.69%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.56%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.56%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.56%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.56%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.56%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.71%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.71%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.71%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.71%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.71%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.85%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.85%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.85%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.85%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.85%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.85%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.85%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.85%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.85%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300002076Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3Host-AssociatedOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005886Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205EnvironmentalOpen in IMG/M
3300005888Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300015265Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027835Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031152Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_SEnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10535237723300000364SoilMASIRTVMVTLAVLVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALAG
JGI11643J11755_1121858023300000787SoilMRTLITTAAVVLAFGAGWLANTSAQQTAPAPLITYFSHEKVDASFAQAFASTGSRDLFTRKDRQGHSW
JGI24749J21850_107772423300002076Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFGHEKVDASFAQALASTGSTDLFARKDRQGHAWTIHSNSR
Ga0055500_1007979013300004062Natural And Restored WetlandsMLSMRTMMMTAVVVLAFGAGWLANASTQQKAPAPLITYFSHEKVDA
Ga0066680_1038326523300005174SoilMKTTLMPALAVALFSAGWLARTYAQQKAPAPLITYFSHDSVDASFAQALASTASRDLYSRKDRQGKTWAIHSNS
Ga0066673_1035908933300005175SoilMHMLSMRTAMMTAVIVVAFGAGWLARTSAQQKAPAPLITYF
Ga0066685_1086162223300005180SoilMKTTLMPALAVALFSAGWLARTYAQQKAPAPLITYFSHDTVDASFAQALASTASRDLYSRKDRQGKTW
Ga0065705_1026314123300005294Switchgrass RhizosphereMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQALASTGSRDLFARKDRQGH
Ga0070676_1139393913300005328Miscanthus RhizosphereMLSMRTVMTTVAVVIAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFTQALAGEGSKDLFSRKD
Ga0068869_10100588123300005334Miscanthus RhizosphereMRTMTMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQ
Ga0068868_10152969013300005338Miscanthus RhizosphereMLSMRTALMTVLVMVAFCMGWLARTTAQQKAPAPFITYFSHEKVDASFAKALASTGSGDLFARKDRQGRTWAVHS
Ga0070692_1013771613300005345Corn, Switchgrass And Miscanthus RhizosphereMLSMRTAMMTAVVTLAFGAGWLANTSAQQKAPAPLITYFSHEKVDAS
Ga0070692_1091835313300005345Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVMTTVAVVIAFSAGWLAKTSAQQKTPAPFITYFSHEKVDAS
Ga0070675_10197292813300005354Miscanthus RhizosphereMLSMRTVMTTVAVVIAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALAGEGS
Ga0070701_1041026013300005438Corn, Switchgrass And Miscanthus RhizosphereMLSMRTAMTTAAVVVAFSAGWLASAAAQQKAPAPLITYFSHDKVDASFAQALGSTGSRDLFARKDRQGHTWAIHSNS
Ga0070701_1076151423300005438Corn, Switchgrass And Miscanthus RhizosphereMLSMRTALMTVLVMVAFCMGWLARTTAQQKAPAPFITYFSHEKVDASFAKALASTGSGDLFARKDRQGR
Ga0070705_10108536723300005440Corn, Switchgrass And Miscanthus RhizosphereMTAAVVLAFSAGWLAKAGAQQKTPAPLITYFSHDKVEASFAQAL
Ga0070700_10119918813300005441Corn, Switchgrass And Miscanthus RhizosphereMLSKRTAMMTAVVTLAFGAGWLANTSAQQKAPAPLITYFSHEKVD
Ga0066686_1101036413300005446SoilMKTTLMPALAVALFSAGWLARTYAQQKAPAPLLITYFSHDSVDASFAQALASTASRDLYS
Ga0070662_10008660633300005457Corn RhizosphereMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQ
Ga0070707_10049676913300005468Corn, Switchgrass And Miscanthus RhizosphereMLSMRTMMMTAAVIVVFSAGWLANSSAQQKAPAPLITYFSHEKVDASFAQALAS
Ga0070707_10079513313300005468Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVLMTAAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQA
Ga0070707_10106961713300005468Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVMMTAAVVVAFSAGWLARTSAQQKAPAPLITYFSHEKVDASFAQALASTGSKDLFARKDR
Ga0070731_1114986313300005538Surface SoilMLSMRTVAMTGMAVVGFGAGWLAKTSAQQKTPAPLITYFSQEKVDASFAQALVNGGGKDLFSRKDRQGHTWAAHTN
Ga0070695_10069306223300005545Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVMTTVAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVD
Ga0070704_10078220123300005549Corn, Switchgrass And Miscanthus RhizosphereMLSMRTMTMTAVVVMAFGAGWLANASAQQKAPAPLITYFSHEKVDASFAHA
Ga0068862_10180832323300005844Switchgrass RhizosphereMLSMRTALMTVLVMVAFCMGWLARTTAQQKAPAPFITYF
Ga0075286_104977513300005886Rice Paddy SoilMLSMRTAMMTAVVMVAFSAGWLAHTSAQQKAPAPLIAYFSHEKVDASFAHALASTG
Ga0075289_107049813300005888Rice Paddy SoilMLSMRTAMMTAVVMVAFSAGWLAHTSAQQKAPAPLITYFGHDKVEASFAKALASTGSRDLFARQ
Ga0066652_10076185513300006046SoilMLSMRTVRMTAVVVVAFCMGWLAKTSAQQKAPAALITYFSHEKVDATFAQALASTGSR
Ga0066652_10088568333300006046SoilMLSMRTVLTTAAAVVVFTAGWLANTNAQQKAPAPPITYFSHEKVDASFAQALASTGSKDLFARKD
Ga0075417_1023284413300006049Populus RhizosphereMLSKRTVMLTAAVLVAFSAGWVAKTSAQQKAPAPLITYFGHEQVDASFARALASAGSRDLFARKD
Ga0075432_1043854913300006058Populus RhizosphereMLSMRTVMMTAAVIVVFSAGWLANSSAQQKAPAPLITYFSHEKVDA
Ga0097621_10048152613300006237Miscanthus RhizosphereMLSMRRVMMTAAVVVAFSAGWLAKTSAQQKAPAPLITYFGHEKVDASFAQALA
Ga0066659_1173760413300006797SoilMLSVRTVVMTAFTVMAFGAGWLAKTNAQQKAPAPLITYFSHEKVEASFAQALATTGSKDLFTRKDRQGRTWAA
Ga0075425_10104269223300006854Populus RhizosphereMMLSMRTVITTAAVVIAFSAGWLAKTSAQPKVPAPLITYFGHEKVDASFAEALASTGSKDLFARKDRQGRTWA
Ga0075434_10032102933300006871Populus RhizosphereMLSIRPVMMTAAVMVAFGAGWLANASAQQKAPAPLITYFSHEKVDASFA
Ga0075424_10080250223300006904Populus RhizosphereMLSMRTMMMTAAVIVVFSAGWLANSSAQQKAPAPLI
Ga0075419_1035803923300006969Populus RhizosphereMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQALASTGSRDLFARKDRQGHSWAIHSNSRG
Ga0099794_1071260723300007265Vadose Zone SoilMMTVLTVTAFGAGWLAKTNAQQKVPAPLIAYFSHEKV
Ga0066710_10108914023300009012Grasslands SoilMKTTLMPALAVALFSAGWLARTYAQQKAPAPLITYFSHDSVDASFAQ
Ga0111539_1212765023300009094Populus RhizosphereMMMTAAVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQALASTGSRDLFARKDRQGH
Ga0099792_1039770733300009143Vadose Zone SoilMMTVLTVTAFGVGWLAKTNAQQKVPAPLITYFSHEKVEASFVQALAATGGKDLFTRKD
Ga0105243_1191926613300009148Miscanthus RhizosphereMRTALMTVLVMVAFCMGWLARTTAQQKAPAPFITYFSHE
Ga0126380_1153164513300010043Tropical Forest SoilMVTAAVLVAFSAGWLAKTSAQQKAPPPLITYFGHEQVDASFARALASTGSRDLFARKDRQGRTWAIHSNS
Ga0126382_1198577323300010047Tropical Forest SoilMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFGHEKVDASFAQALASTGSTDLFARKDRQGHAWTVHSNS
Ga0134064_1034825513300010325Grasslands SoilMMTVVTVTAFGVGWLAKTNAQQKIPAPLIPYFSHEKVEASFVQALATTGGKDLFTRKDRQGRTWAPTPTAAAKQQ
Ga0126370_1006403143300010358Tropical Forest SoilMMTVLTVTAFGVGWLAKTNAQQKVPAPLITYFSHEKVDA
Ga0126370_1034176313300010358Tropical Forest SoilMDCKGGKDYMLSMRTVVITALIVTAFGAGWLAKTNAQQKVPAPLITYFSHEKVDASFVQALATTGGKDLFTRK
Ga0134127_1175101313300010399Terrestrial SoilMRTLITTAAVVLAFGAGWLANTSAQQTAPAPLITYFSHEKVDASFAQA
Ga0134123_10001547153300010403Terrestrial SoilMRTAMTTAAVVVAFSAGWLASAAAQQKAPAPLITYFSHDKVDASFAQALGSTGSRDLFARKDRQG
Ga0137389_1173291213300012096Vadose Zone SoilMTAMAVVGFGAGWLAKTSAQQKAPAPLITYFSQEKVDASFARALVNGGGKDL
Ga0137382_1126353523300012200Vadose Zone SoilMEHMLSMRNVAVTAALVVAFSAGWLAKSSAQQKAPAPLITYFSHEKVDASFAQALGSTGSSDRALGS
Ga0137399_1136389613300012203Vadose Zone SoilMRTAMTTAAVVVAFSAGWLARTSAQQKAPAPLITYFSHEKVDASFAQALGSTGSRDLFAR
Ga0137380_1099067023300012206Vadose Zone SoilMRTVMMTAAVVVAFSAGWLAKTSAQQKTPAPLITYFSHEKVD
Ga0137368_1051500623300012358Vadose Zone SoilMRTVMMTAAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALASTGSRDLFARKDRQGRT*
Ga0137397_1046855613300012685Vadose Zone SoilMTTAAVVVAFSAGWLARTSAQQKAPAPLITYFSHEK
Ga0137395_1009867633300012917Vadose Zone SoilMMTVVTVTAFGAGWLAKTNAQQKVPAPLITYFSHEKVEASFVQALA
Ga0137394_1045916423300012922Vadose Zone SoilMLSMRNVVVKAALVVAFSAGWLAKRSAQQKAPAPLITYFSHEKVDASFATALASTGS
Ga0137359_1083342713300012923Vadose Zone SoilMKTTFMKTTLMPALAVALFSAGWLARTYAQQKAPAPLITYFSHDSVDASFAQALASTGSGDLYSRKDRQGKTWAIH
Ga0126369_1081956923300012971Tropical Forest SoilMDCKGGKDYMLSMRTVVITALTATAFGAGWLAKTNAQQKVPAPLITYFSHEKVDASFVQALATTG
Ga0126369_1341024013300012971Tropical Forest SoilMRSIQKTMKTTFMKTTLMPALAVALFSAGWLARTYAQQKAPAPLITYFSHDSVDASFAQALASTGSRDL
Ga0157374_1167182723300013296Miscanthus RhizosphereMLSMRTVMTTVAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEK
Ga0134081_1007700633300014150Grasslands SoilMTVLTVTAFGAGWLAKTNAQQKVPAPLITYFSHEKVEASFV
Ga0181530_1060240913300014159BogMLPARTVAMTALTLVAFGAGWLAKTSAQTKAPAPLITYFSHEKVDASF
Ga0182005_120350023300015265RhizosphereMRTVMTTVAVVVAFSAGWLAKTSAQQQAPPPLITYFTHEKVDASFTQALAGEGSKDLFSRKDRQGHAWTIHSN
Ga0132256_10038150343300015372Arabidopsis RhizosphereMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFGHEKVDASFAQALASTGSTDLFARKDRQGH
Ga0132256_10257441713300015372Arabidopsis RhizosphereMRTVITTAVVVLAFGAGWLAKTSAQQKAPAPLITYFSHDKVDASFAQALGSTGSRDLFARKDR
Ga0132257_10063093943300015373Arabidopsis RhizosphereMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFG
Ga0132257_10096036613300015373Arabidopsis RhizosphereMRTVITTAVVVLAFGAGWLAKTSAQQKAPAPLITYFSHDKVDASFAQALGSTGSRDLFDRKDRQG
Ga0182035_1117067623300016341SoilMLSVRTVVIPALTVMAFGAGWLAKTNAQQKAPAPLITYFSHEKVD
Ga0182035_1154147813300016341SoilMLSLRTVMMTALIVTAFGTGWLAKTNAQQKAPAPFITYFSHEKVDESFA
Ga0182037_1021024643300016404SoilMLSLRTVMMTALIVTAFGTGWLAKTNAQQKAPAPFITYFSHEKVDESFAQAFATTGSKDL
Ga0182037_1065133113300016404SoilMLSVRTVMMTALTVTAFGVGWLAKTNAQQKVPAPLITYFSHEKVDASF
Ga0134083_1008130913300017659Grasslands SoilMLSMRTVMMTAVVVVAFSAGWLAKTSAQQKTSAPLITYFSHEKVDASFAQALA
Ga0184605_1024121723300018027Groundwater SedimentMLSMRTVMMTAVVVVAFCMGWLAKTSAQQKAPAPLITYFSH
Ga0193699_1012074623300021363SoilMLSMRTVMMTVVVVVAFSVGWLARTSAQQKAPAPLI
Ga0187846_1020101813300021476BiofilmMLSVRTVVMTALTVMAFGAGWLAKTNAQQKAPAPLITYFSHE
Ga0179591_102691063300024347Vadose Zone SoilMLSMRTVMMTAVVMVAFSAGWLANTSAQQKAPAPSSPICRSS
Ga0207656_1047458813300025321Corn RhizosphereMLSMRTVMTTVAVVIAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALAGEGSRD
Ga0207688_1013151413300025901Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVMTTVAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALA
Ga0207646_1048415513300025922Corn, Switchgrass And Miscanthus RhizosphereMLSMRTMMMTAAVIVVFSAGWLANSSAQQKAPAPLITYFSHEKVDASFAQALASNGSRDLFARKDRQ
Ga0207646_1066861223300025922Corn, Switchgrass And Miscanthus RhizosphereMLSMRTVLMTAAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALA
Ga0207659_1021550013300025926Miscanthus RhizosphereMRTVMMTAAVVAAFSAGWLAKTSAQQKAPAPLITFF
Ga0207690_1074363423300025932Corn RhizosphereMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQALASTGSRDLFA
Ga0207670_1010526133300025936Switchgrass RhizosphereMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVD
Ga0207679_1047523413300025945Corn RhizosphereMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQALASTGSRDL
Ga0207651_1018944923300025960Switchgrass RhizosphereMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFGHEKVDA
Ga0207677_1144063623300026023Miscanthus RhizosphereMGWLARTTAQQKAPAPFITYFSHEKVDASFAKALASTGSGDLFARKDR
Ga0207708_1114288523300026075Corn, Switchgrass And Miscanthus RhizosphereMLSMRTALMTVLVMVAFCMGWLARTTAQQKAPAPFITYFSHEKVDASFAKALASTGSGDL
Ga0207641_1048671323300026088Switchgrass RhizosphereMLSMRTVMTTVAVVVAFSAGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALAGEGSKD
Ga0207683_1078595913300026121Miscanthus RhizosphereMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFGHEKVDASFAQALASTGSTD
Ga0209375_103080913300026329SoilMLSVRTVTMTVLTVTAFGAGWLAKTNAQQKVPAPLITYFSHEKVEASFVQALATTGGKDLFT
Ga0209118_117046023300027674Forest SoilMLSMRTVVMTAMAVVGFGAGWLAKTSAQQKAPAPLITYFSQEKVDASFA
Ga0209515_1067463213300027835GroundwaterMLSMRTVMMTAVVVVAFSVGWLAKTSAQQKAPAPLITYFSHEKVDASFAQALASTGNRDL
Ga0209166_1043888813300027857Surface SoilMLSMRTVVMTAMAVVGFGAGWLAKTSAQQKAPAPLITYFSQEKVDASFARALANGGGKDLFSRKDRQGHTWAAHT
Ga0209814_1024588223300027873Populus RhizosphereMLSKRTVMLTAAVLVAFSAGWVAKTSAQQKAPAPLITYFGHEQVDASFARALASAGSRDLFARKDRQGRTWAIHSN
Ga0209481_1022223313300027880Populus RhizosphereMLSKRTVMLTAAVLVAFSAGWVAKTSAQQKAPAPLITYFGHEQVDASFARALASAGSRDLFARKDRQGRT
Ga0209488_1050038133300027903Vadose Zone SoilMLSVRTVMMTVLTVTAFGVGWLAKTNAQQKVPAPLI
Ga0222749_1006599123300029636SoilMTALTLVAFGAGWLAKTSAQTKAPAPLITYFSHEKVDESFAQALAKTGGKDLFVRKD
Ga0307501_1002886613300031152SoilMLSMRTVMMTAVVVVAFSAGWLANTSAQQKAPAPLITYFSHEKVDASFAHALASTGSSDLFARKDRQGRTWA
Ga0310915_1111440413300031573SoilMLSLRTVMMTALTVMVFGAGWLAKTNAQQKPPAPLITYFSHEKVDASF
Ga0310686_11790778333300031708SoilMLSVRTVTMTALTLVAFGAGWLAKTSAQTKAPAPLITYFSYEKVDASFVQLHPQR
Ga0310813_1048153813300031716SoilMLSMRTVMMTAAVVVAFSAGWLAKTSAQQNAPAPLITYFGHDKVDAS
Ga0306917_1068183123300031719SoilMLSMRTIMMTALIVMVFCAGWLAKTNAQQRAPAPLITYFSHERVDVSFAQALATTGS
Ga0307468_10058519723300031740Hardwood Forest SoilMLSMRTVMTSAVVAVAFGAGWLANAGAQQKAPAPLITYFSHEKVDASFAHALAST
Ga0306918_1110648423300031744SoilMLSVRTVMMTALTVTAFGVGWLAKTNAQQKVPAPLITYFSHEKVDASFAQALANAGSKDLFTRMDRQ
Ga0310904_1012946533300031854SoilMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDASFAQALASTGSRDLFARKDRQ
Ga0318551_1088432723300031896SoilMLSVRTVVIPALTVMAFGAGWLAKTNAQQKAPAPLITYFSHEKVDAS
Ga0306923_1147764723300031910SoilMLSLRTVKMTALTVMAFGTGWLAKTNAQPKALANLITYFSHEEVDASFAQAL
Ga0306923_1176407113300031910SoilMLSLRTVTMTALTVMAFGAGWLAKTNAQQKAPAPLITYFSHEKVDTSFAQALA
Ga0306921_1066794933300031912SoilMLSLRTVMMTALIVTAFGTGWLAKTNAQQKAPAPFITYFSHEKVVESFAQAFATAGSKDL
Ga0310912_1094653013300031941SoilMLSLRTVMMTALIVTAFGTGWLAKTNAQQKAPAPLITYFSHEKVNVSFAQALATTGSKDL
Ga0306926_1079622713300031954SoilMLSVRTVMMTALTVMVFCAGWLAKTNAQQKAPAPLITYFSHEKVDVSFAQALATTGSKDLFTRKDRQGRTWA
Ga0307479_1065205623300031962Hardwood Forest SoilMLSMRTVVMTTMAVVGFGAGWLAKTGAQQKPPAPLITYFSQE
Ga0310902_1066866723300032012SoilMRTMMMTAVVVAAFSAGWLAKTSAQQKAPAPLITYFAHEKVDAS
Ga0307472_10172887623300032205Hardwood Forest SoilMLSMRTVAMTAMAVVGFGAGWLAKTGAQQKPPAPLITYFSQEKVDASFARALVNGGGKDLFSR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.