NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077540

Metagenome / Metatranscriptome Family F077540

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077540
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 46 residues
Representative Sequence MTAALPNRIPTDSPSYRSGDPRQRLIVALDVSTAAAAQKIVAA
Number of Associated Samples 106
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.85 %
% of genes from short scaffolds (< 2000 bps) 0.85 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.145 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(35.043 % of family members)
Environment Ontology (ENVO) Unclassified
(38.462 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.735 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.44%    β-sheet: 0.00%    Coil/Unstructured: 60.56%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF03330DPBB_1 88.03
PF08543Phos_pyr_kin 11.11
PF13620CarboxypepD_reg 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG0351Hydroxymethylpyrimidine/phosphomethylpyrimidine kinaseCoenzyme transport and metabolism [H] 11.11
COG0524Sugar or nucleoside kinase, ribokinase familyCarbohydrate transport and metabolism [G] 11.11
COG2240Pyridoxal/pyridoxine/pyridoxamine kinaseCoenzyme transport and metabolism [H] 11.11
COG2870ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferaseCell wall/membrane/envelope biogenesis [M] 11.11


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.15 %
All OrganismsrootAll Organisms0.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300030586|Ga0265393_1051096All Organisms → cellular organisms → Bacteria → Acidobacteria782Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil35.04%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.13%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.13%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.27%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.42%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.42%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.42%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.42%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.56%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.56%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.71%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.71%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.71%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.71%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.71%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere1.71%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.85%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.85%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.85%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.85%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.85%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.85%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.85%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.85%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.85%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.85%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352024Bare-fallow DEEP SOILEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000893Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004138Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF246 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004803Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005886Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300009628Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022511Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022513Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022529Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022715Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027568Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300030011Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3EnvironmentalOpen in IMG/M
3300030529Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE013SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030531Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030548Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR016SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030549Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030577Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO131-ARE010SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030583Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE023SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030586Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300030605Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE042SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030629Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030687Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300030740Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assemblyEnvironmentalOpen in IMG/M
3300030741Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assemblyEnvironmentalOpen in IMG/M
3300030743Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assemblyEnvironmentalOpen in IMG/M
3300030851Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030937Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300030945Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030969Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031049Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C2 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031663Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031677Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031791Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031837Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033818Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-MEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deeps_014089202199352024SoilMHSLPNRIPNGSSGYRSGGHLSVDPRQRLIVALDVSSAAAARRIVA
INPhiseqgaiiFebDRAFT_10185737523300000364SoilMAALPNRIPTDSSSYRSNDPRERLIIALDVSTTAAAQ
AP72_2010_repI_A001DRAFT_100787433300000893Forest SoilMTAALPDRIPNDNLSYRSVDPRQRLIVALDVSTAAAAHKIVAAVGDS
JGIcombinedJ26739_10101480823300002245Forest SoilMTALPNPIPLPPLGNNAVDPGAKLIVALDVSTAAAAQKIVAAVG
Ga0058905_158604213300004138Forest SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSSAAAAQKIVAAVGDSALT
Ga0058862_1272756613300004803Host-AssociatedMPAALPNRIPSDGVSHRGDELHPGDPRHKLIVALDVSSAAAAQKIVAAVG
Ga0066690_1014621033300005177SoilMSAALPNRIPSDGVSHRGDELHPGDPRHKLIVALDVSSAAAAQKIVAAVGDSALTYKVGM
Ga0070681_1067987913300005458Corn RhizosphereMPAALPNRIPSDGVSHRGDELHPGDPRHKLIVALDVSSAAAAQKIVA
Ga0070695_10048963123300005545Corn, Switchgrass And Miscanthus RhizosphereMPAAPPQRIPNNFPNDLRNDDPRQRLIVALDVSTTAAAQKVVTAVGDSALTYKVGM
Ga0070761_1006906213300005591SoilMPAALPNRIPSDSYDYRSADIRSDDPRQRLIVALDVSTAAAAHQIVAAVGDSALT
Ga0070764_1105020213300005712SoilMPVLSNRIPSESYDSRSHSHGNGDPRRRLIVALDVSTAAAAQKIVAA
Ga0066903_10559627213300005764Tropical Forest SoilMSAALPNRIPNDSARYLSDDPRQRLIVALDVSTAAAA
Ga0075286_103753323300005886Rice Paddy SoilMPAALPNRIPSDGVSHRGDELHPGDPRHKLIVALDVSSATAAQKIVAAVGD
Ga0070766_1065282123300005921SoilMSALPNLPLDSRGDGVDSHKNDPRSKLIVALDVSTAAAAQKIVAAVG
Ga0070717_1139790113300006028Corn, Switchgrass And Miscanthus RhizosphereMLTTLPDRIPNDSVGYRSDDPRQRLIVALDVSTAAAAQKIVAAVGDS
Ga0075029_10025367213300006052WatershedsMTAALPNRIPNDSLRYRNGDPRQRLIVALDVSSAAAAHKIVAAVGDSALTYKVGM
Ga0070765_10031701533300006176SoilMQAALPHRIPPDPRGSDLHKTDPRAQLIIALDVSTAAAAQKIVAAVGDSALTYK
Ga0075425_10302453613300006854Populus RhizosphereMTAALPNRIPNDSIRYRSVDPRERLIVALDVSSAAAAQKIVAA
Ga0099829_1034876913300009038Vadose Zone SoilMTALPNLIPSDPRGHDAGDPRSKLIVALDVSTAAAAQKIVAAVGDSALTYK
Ga0116105_102078533300009624PeatlandMPVLSNRIPSDSSDYRSGQVRSGDLRNGDPRQRLIVALDVSTSAAAQKIVAAVGDSA
Ga0116125_100290263300009628PeatlandMQATLPNRIPSRLADDVYKNDVRAKLIVALDVSTAAAAQKIVA
Ga0126373_1079936423300010048Tropical Forest SoilMTAALPNRIPNDSAGYRNDDPRQRLIVALDVSTTA
Ga0074044_1012511433300010343Bog Forest SoilMLAALPNPIHSDPRKSNARDRLIVALDVSTAAAAQKIVAAVGD
Ga0126379_1201095413300010366Tropical Forest SoilMTAALPNRIPTDSPGYLSGDPRERLIVALDVSTSAAAQRIVAA
Ga0126381_10411200613300010376Tropical Forest SoilMTAALPNRIPNDSLRYRGADPRERLIVALDVSTAAAAQKIVA
Ga0137392_1145957823300011269Vadose Zone SoilMTAVPNLIPTDPRGHDAGDPRSKLIVALDVSTAAAAQKIVAAVGDSALTYK
Ga0137391_1069989923300011270Vadose Zone SoilMQASLPHRIPLTGVDRSAGAIDPRQRLIVALDVSTAAAAQKIVA
Ga0137393_1113656723300011271Vadose Zone SoilMQVSLPHRIPLSGMDLSAGRIDPRQRLIVALDVSSAAAAQKIVAAVGDSALTY
Ga0150984_10167195423300012469Avena Fatua RhizosphereMTAALPNRIPRDSIGYRSDDPRQRLIVALDVSSAAAAQKIVAAVGDSALT
Ga0150984_10445465723300012469Avena Fatua RhizosphereMQAASSDRVPLGAITDPRHRLIVALDVSTAAAAHKIVAAVG
Ga0126375_1117300213300012948Tropical Forest SoilMSAALPNRIPSDSLSYRSDDPRQRLIVALDVSSSAAAQKIVAA
Ga0126369_1046008413300012971Tropical Forest SoilMSAALPNRIPSDSARYQDSSHVHGDPRQRLIVALDVSTA
Ga0182016_1025174813300014493BogMEAALPYRIPGSDHRENHPQNQNSDPRQKLIVALDVSTAAAAQKIV
Ga0181536_1043791113300014638BogMPVALPNRIPYGGLTSLGGDPRQRLIVALDVSTAAAAQRIVAAVGDSALTYKVGM
Ga0182036_1182070413300016270SoilMTAALPNRIPTDSPSYRSGDPRQRLIVALDVSTAAAAQKIVAA
Ga0182039_1134772113300016422SoilMRAALPNRIPNDSLRYRGVDPRERLIVALDVSTAAAAQKIVAAV
Ga0187814_1033297213300017932Freshwater SedimentMSALPNRILNDSAGYPGSSPAHGDPRQRLIVALDVPTAAAAQKI
Ga0187803_1016028523300017934Freshwater SedimentMQAALPNRIPSDLRDNDPRGKLIVALDVSTAAAAQKIVAAVG
Ga0187808_1050985723300017942Freshwater SedimentMQATLPNRIPQSEFRVGERHMNDPRERLIVALDVSTAAAAQRIVAAVGDS
Ga0187817_1113947013300017955Freshwater SedimentMPVALPNRIPYGGLTSLGGDPRQRLIVALDVSTAA
Ga0187779_1053469713300017959Tropical PeatlandVIGALPNRIPKDIACTDDPRQRLIVALYVSSAASAERIVAAVGDRALTYKVGMQLY
Ga0187782_1013886113300017975Tropical PeatlandMIGALPNRIPKDIVCNDDPRQRLIVALDVSSAASAERIVAAVGDRAL
Ga0187874_1039149613300018019PeatlandMPVLSNRIPSDSSDYRSGQVRSGDLRNGDPRQRLIVALDVSTSAAAQKIV
Ga0187869_1001626413300018030PeatlandMEAALPYRIPGSDHREDHPQNQNSDPRQKLIVALDVSTAAAAQKIVA
Ga0187887_1023254713300018043PeatlandMTAALPNRLPSDSSDYRMGKVHSDDLRDDDPRQRLIVALDVSTAAAAQRIVAAVGDS
Ga0179592_1044481323300020199Vadose Zone SoilMPAVLPNRIPHSGKSNESLRGDDPRRRLIVALDVSSAAAAHKIVAAVGDSALTYKVGM
Ga0210403_1013795313300020580SoilVQAALPHSIPGSDPTGSRDPRQKLIVALDVSSAAAAQRIV
Ga0210400_1002113113300021170SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSSAAAAQKIVA
Ga0210393_1163710423300021401SoilMQAALPYRIPSGFGDRHKGDPRERLIVALDVSTAALAQGI
Ga0210387_1037954013300021405SoilMQAALPYRIPSGFGDRHKGDPRERLIVALDVSTAALAQGIVTAVGE
Ga0210391_1055075913300021433SoilMQAVLPNGIPFAVGVHENDARGKLIVALDVSTAAAAQKIVAAVGD
Ga0210390_1052331323300021474SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSSAAAAQKIVAAVGDS
Ga0210390_1149333513300021474SoilMTALPNPLPLPPLGHHAVDSGAKLIVALDVSTAAAAQKIVAAVGDSALT
Ga0126371_1004230613300021560Tropical Forest SoilMTAALPNRIPSDSVRYRSADPRERLIVALDVSSAAAAQKIVAAVGDSALTY
Ga0242651_101767513300022511SoilMPAALPRIRDGGLTYRNLDPRQRLIVALDVSTAAAAQKIVAAVGESASTYKV
Ga0242667_101506423300022513SoilMQATLPHPIPGSAAFSDSDPRQKLIVALDLSTAAAAQKIVTAVGDSAFTYKVG
Ga0242668_114791213300022529SoilMQAALPNRIPLGGFPRIADPRHRLFVALDVSTAAAAQKIVATVGDS
Ga0242660_108451013300022531SoilMQAALPYRIPSGFGDRHKGDPRERLIVALDVSTAALAQGIVTAVGESC
Ga0212123_1079440223300022557Iron-Sulfur Acid SpringMSATLPHGVSSVVDSHKNDAREKLIVALDVSTAAAAQKIVAAVGDSAL
Ga0242671_104354323300022714SoilMQASSPNRIPLGSFSAVADPRHRLIIALDVSTAAAAQKIV
Ga0242678_102228723300022715SoilMPTISNRIPSDSSDYRSGQVRSDDLRNGDLRNGDPRQRLIVALDVSTAAAAQKIVA
Ga0242666_108672013300022721SoilMPAALPRIRDGGLTYRNLDPRQRLIVALDVSTAAAAQKIVAAVGESA
Ga0242657_122507113300022722SoilMQATLTNRIPNDPDVNPAREKLIVALDVSTAAAAQK
Ga0207663_1167229713300025916Corn, Switchgrass And Miscanthus RhizosphereMPAALPNRIPSDGVSHRGDELHLGDPRQKLIVALDVSSAAAAQKIVAAV
Ga0209055_111540433300026309SoilMTAALPDRIPTDSLSYRSDDPRERLIVALDVSSAAA
Ga0209471_112744523300026318SoilMPAVFPNRIPFSGANANLDPRQRLIVALDVSTAAAAQKIVAA
Ga0209648_1074275613300026551Grasslands SoilMTALPNHIPTDPRSHDAGDPRSKLIIALDVSTGAAAQ
Ga0208042_102685613300027568Peatlands SoilMPAASPNRVAQGLSDLVGGRRSEDPRQRLIVALDVSTAAAAQK
Ga0209446_103867513300027698Bog Forest SoilMQATLTNRIPNDRRNNDRQNNDPGVNPAREKLIVALDVSTAAAA
Ga0209772_1007039813300027768Bog Forest SoilMQATLTNRIPNDRRNNDRQNNDPGVNPAREKLIVALDVSTAAAAQKIVAAVGDS
Ga0209693_1061449123300027855SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSSAAAAQKI
Ga0209169_1018182913300027879SoilMTALPNPIPLPPLGNNAVDPGAKLIVALDVSTAAAAQKIVAAVGDSAL
Ga0302270_1035851613300030011BogMQATLPNRIPSRLADDVYKNDVRAKLIVALDVSTAAAAQKIV
Ga0210284_117629113300030529SoilMPALSNRIPSDSSDYRSGQVRSGDLRNGDPRQRLIVALDVSTSAAAQKI
Ga0210274_144767823300030531SoilMSALPNHIPLDSPHGVGLPKNDPREKLIVALDVSTAAAAQKIVTAVGD
Ga0210252_1044931813300030548SoilMQAALPHLIPSDDPRKTEKTDPREKLIVALDVSTAAAAQKIVAA
Ga0210257_1040758713300030549SoilMQATLPNRILNNPTANPAREKLIVALDVSTAAAAQKIVAAVGNSAQRK
Ga0210260_1016402113300030577SoilMHAALPKGSPVGERSSGENDPRQKLIVALDVSTAAAAQKIVAA
Ga0210262_109928123300030583SoilMQAALPNRIPSDERGVTSQGKLIVALDVSTAAAAQKIVAAVGDSVKSNKK
Ga0265393_105109613300030586SoilMTAALPNRIPSDSSDYRKGDFHSDDPRQRLIVALDVSTAAAAQKIVAAVGDS
Ga0210265_106488513300030605SoilMQATLPHRIPSPSRTNDPRDKLIVALDVSTAAAAQRIVAAVGDSEK
Ga0210268_114553223300030629SoilMQAALPHGIPSGSRAGDSRGADFHKNDPREKLIVALDVSTAAAAQRI
Ga0210268_114654023300030629SoilMQAALRHRIPSDPRGNDLHSDPRGKLIVALDVCTAAAAQKIVAAVG
Ga0302309_1008689913300030687PalsaMQATLPNRIPSDQRETSLPENDVRGKLIVALDVSTAAAAQKIVAAVGDSALTYKVGM
Ga0307482_113458923300030730Hardwood Forest SoilMPAALPRIRDGGLTYRDLDPRQRLIVALDVSTAAAQKIVAAVGES
Ga0265462_1244566013300030738SoilMAALPNSIPSAPRGQEATDPRGRLIVALDVSTAAAAQKIVAAVGDSIRKKKQKE
Ga0265460_1096841323300030740SoilMSAALPNLLPSLSPINDPREKLIVALDVSTAAAAQRIVAAVGDSADDIKR
Ga0265460_1129730423300030740SoilMQAALPHTIPSDSRSNDARGKLIVALDVSSAAAAQKIVTAVGDSAKE
Ga0265460_1278082023300030740SoilMQAALPHRLPSASRQSDMREKLIVALDVSTAAAAQKIV
Ga0265460_1302475113300030740SoilMQAALPNRIPLGSFTRIADPRHRLIVALDVSTAVAAQKIV
Ga0265459_1199525413300030741SoilMQAALRHRIPSDPRGNDLHSDPRGKLIVALDVCTAAAAQK
Ga0265461_1183512513300030743SoilMSAALPNLVPSDPRRVDLQKDDPRGRLIVALDVSTAAAAQKIVAAVG
Ga0265461_1187685023300030743SoilMTALPNPVPLAPLGHHAVDTGAKLINALDVSSAAAAQKIV
Ga0075380_1144753623300030851SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSSAAAAQKIVAAVGD
Ga0138302_132931223300030937SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSSAAAAQKIVAAVGDSA
Ga0138302_143134323300030937SoilMQASLPHGIPGNTPNASKHDPREKLIVALDVSTAAAAQKIVAAVGDSAKK
Ga0075373_1161265123300030945SoilMTAALPNRIPSDSVGYHSGDPRQRLIVALDVSTAAAAQK
Ga0075394_1207453723300030969SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSTAAAAQKIVAAVGD
Ga0074036_1117075223300031049SoilMPAALPRIRDGGLTYRNLDPRQRLIVALDVSTAAAAQR
Ga0170824_12188776923300031231Forest SoilMTAALPDRIPTDSLSYRSDDPRQRLIVALDVSTAAAAQKIVAAVG
Ga0170818_10056810123300031474Forest SoilLPTRIPFSEIKGDNFDARQRLIVALDVSSAAAAQKIVAAVGDSALTYKVGM
Ga0170818_10865293613300031474Forest SoilMTAALPHRIPSDSVGYPSGDPRQRLIVALDVSTTAAAQKIVAAVG
Ga0307484_10613923300031663Hardwood Forest SoilMPTISNRIPSDSSDYRSGQVRSDDPRNDDLRNGDPRQRLIVAL
Ga0307480_100819123300031677Hardwood Forest SoilMTAALPDRIPTDSLSYRSDDPRQRLIIALDVSSAAA
Ga0316034_10387213300031791SoilMHAPPNRIPSDPREKLIVALDVSTAAAAQKIVAAVGDSANGKKIRRK
Ga0307478_1051328913300031823Hardwood Forest SoilMQAALPNRIPLGGFPRIADPRHRLIVALDVSTAAAAQKI
Ga0302315_1076275313300031837PalsaMQATLPNRIPSDQRETSLPENDVRGKLIVALDVST
Ga0306919_1058932023300031879SoilMSALPNRLPSDTLRYQDRVHDDPRQRLIVALDVSNATAAR
Ga0306925_1120693223300031890SoilMAALPNEIAQDRDPREHLIVALDVSTAAAAQKIVAAVGDSAST
Ga0310912_1128868013300031941SoilMSALPNRLPSDTLRYQDRVHDDPRQRLIVALDVSNATAARKIVAAVGDSALT
Ga0310916_1094417123300031942SoilMAAALPNRIPNDSLRYRGVDPRERLIVALDVSTAAAAQKIVAAVGDSAL
Ga0306926_1193810413300031954SoilMAALPNELAHDRDPRERLIVALDVSTAAAAQKIVAAVGDSAS
Ga0335085_1180362523300032770SoilMSAALPNRIPSDRSSYRSDDPRQRLIVALDVSSAA
Ga0335085_1229570113300032770SoilMAALPNRIPEGGVSYPSDRLRGHDPRERLIVALDVFTAAAAQRIVAAVGDSALTYKVG
Ga0335085_1255576823300032770SoilMAAALPDRIPNDSLSYRSNDPRRRLIVALDVSSAAAAQKIVAAVG
Ga0335077_1140750313300033158SoilMPAALPNRISHGLSYTGGDPRQRLIVALDVSTAAAAQKIVAAVGDSAL
Ga0334804_178976_376_5133300033818SoilMEAALPYRIPGSDHREDHPQNQNSDPRQKLIVALDVSTAAAAQKIV


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