Metagenome / Metatranscriptome Family F077649

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077649
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	89 residues
Representative Sequence	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Number of Associated Samples	84
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.38 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	76.92 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.205 % of family members)
Environment Ontology (ENVO)	Unclassified (41.880 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.359 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.88% β-sheet: 0.00% Coil/Unstructured: 58.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00072	Response_reg	13.68
PF00158	Sigma54_activat	9.40
PF02954	HTH_8	7.69
PF13662	Toprim_4	1.71
PF13177	DNA_pol3_delta2	1.71
PF02575	YbaB_DNA_bd	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0718	DNA-binding nucleoid-associated protein YbaB/EfbC	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.97 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	40.17 %
Unclassified	root	N/A	33.33 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.17 %
Unclassified	root	N/A	33.33 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.17 %
Unclassified	root	N/A	33.33 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.56 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001167\|JGI12673J13574_1010063	Not Available	564	Open in IMG/M
3300001593\|JGI12635J15846_10013229	All Organisms → cellular organisms → Bacteria	6905	Open in IMG/M
3300001867\|JGI12627J18819_10300251	Not Available	647	Open in IMG/M
3300001867\|JGI12627J18819_10402924	Not Available	556	Open in IMG/M
3300002914\|JGI25617J43924_10018634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2380	Open in IMG/M
3300003505\|JGIcombinedJ51221_10208195	Not Available	794	Open in IMG/M
3300004099\|Ga0058900_1010995	Not Available	946	Open in IMG/M
3300004101\|Ga0058896_1029678	Not Available	504	Open in IMG/M
3300004119\|Ga0058887_1001302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	950	Open in IMG/M
3300004135\|Ga0058884_1371773	Not Available	537	Open in IMG/M
3300004139\|Ga0058897_11153467	Not Available	505	Open in IMG/M
3300004631\|Ga0058899_10118159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	970	Open in IMG/M
3300004631\|Ga0058899_10156267	Not Available	520	Open in IMG/M
3300005167\|Ga0066672_10378537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300005174\|Ga0066680_10030634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3040	Open in IMG/M
3300005174\|Ga0066680_10160503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1409	Open in IMG/M
3300005178\|Ga0066688_10956993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300005179\|Ga0066684_10488513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300005534\|Ga0070735_10106592	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300005534\|Ga0070735_10474663	Not Available	746	Open in IMG/M
3300005537\|Ga0070730_10063580	All Organisms → cellular organisms → Bacteria	2623	Open in IMG/M
3300005538\|Ga0070731_10037580	All Organisms → cellular organisms → Bacteria → Acidobacteria	3255	Open in IMG/M
3300005541\|Ga0070733_10244285	All Organisms → cellular organisms → Bacteria → Acidobacteria	1180	Open in IMG/M
3300005541\|Ga0070733_10246355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300005561\|Ga0066699_11104245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300005568\|Ga0066703_10273265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300005576\|Ga0066708_10230361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1172	Open in IMG/M
3300005921\|Ga0070766_10940276	Not Available	593	Open in IMG/M
3300006173\|Ga0070716_101311682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300006176\|Ga0070765_100601513	Not Available	1037	Open in IMG/M
3300006804\|Ga0079221_10949818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300006806\|Ga0079220_10871942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300006954\|Ga0079219_11858994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300009088\|Ga0099830_10669231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300011120\|Ga0150983_10057174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300011120\|Ga0150983_10976721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300011120\|Ga0150983_11406344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300011120\|Ga0150983_14758573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300011120\|Ga0150983_14967586	Not Available	698	Open in IMG/M
3300011269\|Ga0137392_10314545	All Organisms → cellular organisms → Bacteria → Acidobacteria	1295	Open in IMG/M
3300012357\|Ga0137384_10000796	All Organisms → cellular organisms → Bacteria	24276	Open in IMG/M
3300012927\|Ga0137416_10074213	All Organisms → cellular organisms → Bacteria	2479	Open in IMG/M
3300017930\|Ga0187825_10000213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12344	Open in IMG/M
3300017936\|Ga0187821_10009532	All Organisms → cellular organisms → Bacteria → Acidobacteria	3307	Open in IMG/M
3300017936\|Ga0187821_10011528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3028	Open in IMG/M
3300018007\|Ga0187805_10151232	Not Available	1056	Open in IMG/M
3300018468\|Ga0066662_10062484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2445	Open in IMG/M
3300020579\|Ga0210407_10148061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1808	Open in IMG/M
3300020579\|Ga0210407_10566299	Not Available	886	Open in IMG/M
3300020579\|Ga0210407_10863220	Not Available	695	Open in IMG/M
3300020580\|Ga0210403_10838607	Not Available	728	Open in IMG/M
3300020581\|Ga0210399_10066884	All Organisms → cellular organisms → Bacteria → Acidobacteria	2905	Open in IMG/M
3300020582\|Ga0210395_11216524	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300020583\|Ga0210401_10615398	Not Available	948	Open in IMG/M
3300021046\|Ga0215015_10060345	All Organisms → cellular organisms → Bacteria → Acidobacteria	4079	Open in IMG/M
3300021088\|Ga0210404_10099260	All Organisms → cellular organisms → Bacteria → Acidobacteria	1465	Open in IMG/M
3300021088\|Ga0210404_10852085	Not Available	521	Open in IMG/M
3300021168\|Ga0210406_10089076	All Organisms → cellular organisms → Bacteria → Acidobacteria	2632	Open in IMG/M
3300021171\|Ga0210405_10100074	All Organisms → cellular organisms → Bacteria → Acidobacteria	2287	Open in IMG/M
3300021171\|Ga0210405_10334036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1196	Open in IMG/M
3300021171\|Ga0210405_10490054	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300021171\|Ga0210405_10730976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300021171\|Ga0210405_11248037	Not Available	548	Open in IMG/M
3300021178\|Ga0210408_10398609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1096	Open in IMG/M
3300021407\|Ga0210383_11582535	Not Available	540	Open in IMG/M
3300021420\|Ga0210394_10016915	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6874	Open in IMG/M
3300021420\|Ga0210394_10031345	All Organisms → cellular organisms → Bacteria	4778	Open in IMG/M
3300021420\|Ga0210394_10035514	All Organisms → cellular organisms → Bacteria	4440	Open in IMG/M
3300021420\|Ga0210394_10237477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1594	Open in IMG/M
3300021420\|Ga0210394_10819850	Not Available	812	Open in IMG/M
3300021432\|Ga0210384_10978606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300021432\|Ga0210384_11047923	Not Available	718	Open in IMG/M
3300021474\|Ga0210390_10311829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1333	Open in IMG/M
3300021476\|Ga0187846_10037683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2169	Open in IMG/M
3300021479\|Ga0210410_10180188	All Organisms → cellular organisms → Bacteria → Acidobacteria	1889	Open in IMG/M
3300021479\|Ga0210410_11776446	Not Available	511	Open in IMG/M
3300021559\|Ga0210409_10107564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2569	Open in IMG/M
3300021559\|Ga0210409_11183540	Not Available	640	Open in IMG/M
3300022523\|Ga0242663_1053618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300022525\|Ga0242656_1137883	Not Available	506	Open in IMG/M
3300022532\|Ga0242655_10333404	Not Available	502	Open in IMG/M
3300026334\|Ga0209377_1143390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300026551\|Ga0209648_10009025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8631	Open in IMG/M
3300026552\|Ga0209577_10496925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300027376\|Ga0209004_1034922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300027576\|Ga0209003_1096827	Not Available	556	Open in IMG/M
3300027591\|Ga0209733_1141070	Not Available	589	Open in IMG/M
3300027635\|Ga0209625_1007723	All Organisms → cellular organisms → Bacteria → Acidobacteria	2335	Open in IMG/M
3300027660\|Ga0209736_1045530	All Organisms → cellular organisms → Bacteria → Acidobacteria	1261	Open in IMG/M
3300027765\|Ga0209073_10441336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300027857\|Ga0209166_10468101	Not Available	650	Open in IMG/M
3300027867\|Ga0209167_10161960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300027889\|Ga0209380_10047221	All Organisms → cellular organisms → Bacteria → Acidobacteria	2443	Open in IMG/M
3300028047\|Ga0209526_10046048	All Organisms → cellular organisms → Bacteria → Acidobacteria	3069	Open in IMG/M
3300028047\|Ga0209526_10167370	All Organisms → cellular organisms → Bacteria → Acidobacteria	1534	Open in IMG/M
3300028047\|Ga0209526_10757088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300028536\|Ga0137415_10123544	All Organisms → cellular organisms → Bacteria → Acidobacteria	2434	Open in IMG/M
3300029636\|Ga0222749_10156201	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300030730\|Ga0307482_1298604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300030730\|Ga0307482_1307515	Not Available	512	Open in IMG/M
3300031057\|Ga0170834_111711241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300031231\|Ga0170824_120827212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300031590\|Ga0307483_1039638	Not Available	516	Open in IMG/M
3300031590\|Ga0307483_1041334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300031663\|Ga0307484_117313	Not Available	528	Open in IMG/M
3300031720\|Ga0307469_10887379	Not Available	825	Open in IMG/M
3300031753\|Ga0307477_10614256	Not Available	732	Open in IMG/M
3300031754\|Ga0307475_10451025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300031754\|Ga0307475_10834688	Not Available	730	Open in IMG/M
3300031754\|Ga0307475_11312541	Not Available	560	Open in IMG/M
3300031820\|Ga0307473_11539617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300031823\|Ga0307478_10530179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	983	Open in IMG/M
3300031823\|Ga0307478_11188674	Not Available	635	Open in IMG/M
3300031962\|Ga0307479_10074307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3288	Open in IMG/M
3300031962\|Ga0307479_10076530	All Organisms → cellular organisms → Bacteria	3238	Open in IMG/M
3300032180\|Ga0307471_100452409	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300032180\|Ga0307471_102286261	Not Available	682	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.58%
Aquatic	Environmental → Aquatic	3.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.73%
Freshwater	Environmental → Aquatic → Freshwater	3.42%
Cave	Environmental → Terrestrial → Cave	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.94%
Loam	Environmental → Terrestrial → Soil → Loam	24.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.42%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.11%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	21.37%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	14.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.55%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.27%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12673J13574_10100631	3300001167	Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEILDQVTTSEERLLLEIEPFGSLLDRKAERIN*
JGI12635J15846_100132296	3300001593	Forest Soil	MKLPEYAPATADRVSTREELFQVLELLGGFDEVPGTEAAPTCDLFTCLEAEPTVSPAELLDQVTTREERLLLEIEPFSSLLDRKAERIN*
JGI12627J18819_103002512	3300001867	Forest Soil	EPKGSPKHPIDVREEVNIMKLPQYAPPGSDRASTREELFEVLELLGGFEEHHEAELDQTGDLLACLEADQAPSPTQVLEEVCSDERLLMEIEPFNSLLSRKAERIN*
JGI12627J18819_104029241	3300001867	Forest Soil	STREELFQILELLGGFEEAQGTEPAPACELLARLEAEPTVSPAEILDQATTSEERLLLEIEPFSSLLDRKGERIN*
JGI25617J43924_100186342	3300002914	Grasslands Soil	MKLPEYAPSTFDRASTREELFEVLELLGGFEEPQDPELGQTGDLLACLETDQTASPAELLEDVCTSEERLLLEIEPFNSLLSRKAERIN*
JGIcombinedJ51221_102081951	3300003505	Forest Soil	MKLPEYAPPTADRVSTREELFQVLELLGGFDEVQGTEAGPTCDLFTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN*
Ga0058900_10109952	3300004099	Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPAGDLLACLEGGPTLSPAELLDQATTSEERLLLEIEPFSSLLDRKAERIN*
Ga0058896_10296781	3300004101	Forest Soil	KNPREHPISVRDRGELMKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEVLDQVTTSEERLLLEIEPFSSLLDRKAERIN*
Ga0058887_10013021	3300004119	Forest Soil	EVKIMKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTSDLLACLETDQTMSPTEILDEVCTSEERLLMEIEPFNSLLSRKAERIN*
Ga0058884_13717731	3300004135	Forest Soil	MKQPEYAPSTFDRVSTREELFEVLELVGGFEDLRDTDLDQTGDLLACMEGNQTASPGEILEELCTSEERLLLEIEPFNSLLSRKAERIN*
Ga0058897_111534671	3300004139	Forest Soil	MKLPEYAPATADRVSTREELFQVLELLGGFEEVQGTEPDTTSDLFTCLEAEPTVTPVEILDQVTTSEERLLLEIEPFSSLLDRKAERIN*
Ga0058899_101181591	3300004631	Forest Soil	MKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTSDLLACLETDQTMSPTEILDEVCTSEERLLMEIEPFNSLLSRKAERIN*
Ga0058899_101562671	3300004631	Forest Soil	KLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLFACQEAKPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN*
Ga0066672_103785371	3300005167	Soil	MKLQGYAPSGSDRASTREELFEVLEVLGGFEEPHETEPDQTGDLLACLEADQTASSADMLEELYTSEERLLMEIEPFNSLLSRKAERVN*
Ga0066680_100306342	3300005174	Soil	MKLPEYAPSTSDRASTREELFEVLEVLGGFDEPQDAEFSQTSELLASPEAEPTVSPVEILDAVTTGEEQLLIEIGAFNSLLERKAERIN*
Ga0066680_101605032	3300005174	Soil	MKLPEYAPSTSDRASTREELSEVLELLGGFDEPQDTEFAQTSELLASLEVTVSTVEILDAVTTSEEQLLIEIGAFNSLLERKAERIN*
Ga0066688_109569931	3300005178	Soil	MKLQGYAPSGSDRASTREELFEVLEVLGGFEEPDETEPDQTGDLLACLEADQTASSAAMLEELYTSEERLLMEIEPFNSLLSRKAERVN*
Ga0066684_104885131	3300005179	Soil	MKLQGYAPSGSDRASTREELFEVLEVLGGFEEPHQTEPDQTGDLLACLEADQTASSADMLEDLYTSEERLLMEIEPFNSLLSRKAERVN*
Ga0070735_101065923	3300005534	Surface Soil	MKLPEYATSTSDRASTREELFEVLELLGGFEQVQGNEAAPTCDLLASLEAEADPTVSPAEVLDEVGISEERFLMEMETFNSLLARKAERIN*
Ga0070735_104746632	3300005534	Surface Soil	MKLPQSAPPTFDRVATREELFQVLEVLGGFEEPQATTELAQTRDLLACLEADSIMTPSEILDELTSSEERLLRELDPFNSLLQAKAERIN*
Ga0070730_100635805	3300005537	Surface Soil	MKLPEYAPATADRVSTREELFQVLELLGGFDEVQGTEAAPTCDLFACLEAEPTVSAAEILDQVTTREERLLREIEPFSSLLDRKAERIN*
Ga0070731_100375804	3300005538	Surface Soil	MKLPEYAPSMFDRVATREELFEVLEVLGGFEEPQDSELGQTGDLLACLETDQTMSPTEILDEVCTSEERLLMEIEPFNSLLSRKAERIN*
Ga0070733_102442851	3300005541	Surface Soil	MRLPENALSDRVSTREELFEVLELLGGFEELQGTEPAPTCDLLACLEAEPTVTTAEILDQATTREERLLLEIEPFSSLLERKA
Ga0070733_102463552	3300005541	Surface Soil	MKEKMGEPNDPREHPICVRDRGELMKLPEYAPAAADRVSTREELFQVLELLGGFEELEGAEPSPACELFTCLDSEPTVSPAEILDQVTTREERLLLEIEPFSSLLDRKAERIN*
Ga0066699_111042451	3300005561	Soil	MKLQGYAPSGSDRASTREELFEVLEVLGGFEEPDETEPDQTGDLLACLEADQTASSADMLEELYTSEERLLMEIEPFNSLLSRKAERVN*
Ga0066703_102732652	3300005568	Soil	GSDRASTREELFEVLELLGGFEEPHETELDQTGDSLACLEADQTPSSTDVLEEVCSEERLLMETEPFNSLLSRKAERIN*
Ga0066708_102303611	3300005576	Soil	MKLQGYAPSGSDRASTREELFEVLEVLGGFEEPHETEPDQTGDLLACLEADQTASSADMLEELYTSEERLLMEIEPFNSLLGRKAERVN*
Ga0070766_109402761	3300005921	Soil	MKLPEYAPAASDRVSTREELFQVLELLGGFEEVQGTEPAPAGDLLACLEGGPTLSPAELLDQATTSEERLLLEIEPFSSLLDRKAERIN*
Ga0070716_1013116821	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKLPEYAPSTSDRVSTREELFEVLEVLGGFEEPQGGEAAPKWDLLACLEADGTTCHPEILDEVGSPEERLLMEIEPFNSLLNRKAERIN*
Ga0070765_1006015132	3300006176	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAELLDQATTSEERLLLEIEPFSSLLDRKAERIN*
Ga0079221_109498182	3300006804	Agricultural Soil	MKLPGNAPSASDRASTREELFQVLEVLGGFEEPHETELDETGELLASLEADQTASPADLLDDVCSEERLLLELEPFNAIFSRKAERIN*
Ga0079220_108719422	3300006806	Agricultural Soil	GEIMKLPGNAPSASDRASTREELFQVLEVLGGFAESHETELDETGELLASLEADQTASPADLLDDVCSEERLLLELEPFNAIFSRKAERIN*
Ga0079219_118589941	3300006954	Agricultural Soil	MKLPGNAPSASDRASTREELFQVLEVLGGFAESHETELDETGELLASLEADQTASPADLLDDVCSEERLLLELEPFNAIFSRKAERIN*
Ga0099830_106692312	3300009088	Vadose Zone Soil	MKLPEYAPSTFDRASTREELFEVLELLGGFEEPQDPELGQTGDLLACLETDQTASPAELLDDVCTSEERLLLEIEPFNSLLSRKAERIN*
Ga0150983_100571742	3300011120	Forest Soil	VREEVKIMKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTSDLLACLETDQTMSPTEILDEVCTSEERLLMEIEPFNSLLS
Ga0150983_109767211	3300011120	Forest Soil	VREEVKIMKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTSDLLACLETDQTMSPTELLDEVFTSEERLLMEIEPFNSLLSRKAERIN*
Ga0150983_114063441	3300011120	Forest Soil	GEIMKLPEYAPSMSDRASTREELFEVLELLGGFEEPQGTGQAQTCDLLVCMEADATASSAEVLDEVSAGDERFLMEMETFNSLLARKAERIN*
Ga0150983_147585731	3300011120	Forest Soil	GEPMKLPEYAPSSDRVSTREELFEVLELLGGFDEPQETELARTRNLLACLDAEPTVSPAEILDEISTSEDRLLMEIEPFNSLLGAKAQRIN*
Ga0150983_149675861	3300011120	Forest Soil	APATADRVSTREELFQVLELLGGFEEVQGTEPDTTCDLFTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN*
Ga0137392_103145452	3300011269	Vadose Zone Soil	MKPPEYAPSTSDRASTREELSEVLELLGGFDEPQDTEFAQTSELLASLEVTVSTVEILDAVTTSEEQLLIEIGAFNSLLERKAERIN*
Ga0137384_1000079622	3300012357	Vadose Zone Soil	GFDEPQDTEFAQTSELLASLEVTVSTVEILDAVTTSEEQLLIEIGAFNSLLERKAERIN*
Ga0137416_100742133	3300012927	Vadose Zone Soil	MKLPEYAPSTSDRASTREELFEVLELLGGFDQPQDTEFAQTSELLASLEATVSTVEILDAVTTSEEQLLIEIGAFNSLLERKAERIN*
Ga0187825_100002132	3300017930	Freshwater Sediment	MKLPEYAPSTSDRVSTREELFEVLELLGGFEDLQATEPSATPDLFACLEAEPTVSTADIFDQVSSSEERLLLELEPFSSLLVRKAERIN
Ga0187821_100095326	3300017936	Freshwater Sediment	MKLPEYAPATADRASTREELFQVLELLGGFDEVQGTEAAPTCELFACLEAEPTVSAAEILDQVTTREERLLREIEPFSSLLDRKAERIN
Ga0187821_100115282	3300017936	Freshwater Sediment	MKLPEYAPSTSDRVSTREELFEVLELLGGFEDLQATEPSATPDLFACLEAEPTVSTADILDQVSTSEERLLLELEPFSSLLVRKAERIN
Ga0187805_101512322	3300018007	Freshwater Sediment	MKLPEYAPATADRASTREELFQVLELLGGFEEVQGTEPASSCDLFTCLEAEPTVSAAEIFDQGTTREERLLLEIEPFSSLLDRKAERIN
Ga0066662_100624842	3300018468	Grasslands Soil	MKLPEYAPSTSDRASTREELFEVLEVLGGFDEPQDAEFSQTSELLASPEAEPTVSPVEILDAVTTGEEQLLIEIGAFNSLLERKAERIN
Ga0210407_101480613	3300020579	Soil	MKLPEYPLATPDRVSTREELFQVLELLGGFEEVQGSEPVPACELVARLEAEPTVSPTEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210407_105662991	3300020579	Soil	MKLPEYAPATADRVSTREELFLVLELLGGFDEVQGTEPGPTCDLLTCLEAEPTVSPAEILDQVTSSEERLLLEIEPFSSLLDRKAERIN
Ga0210407_108632202	3300020579	Soil	MKLPEYALATPDRVSTREELFQVLELLGGFEEVQGTEPVPACELVACLEAEPTVSPTEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210403_108386071	3300020580	Soil	MKLPEYAPATADRVSTREELFLVLELLGGFDEVQGTEPGPTCDLLTCLDAEPTVSPAEILDQVTSSEERLLLEIEPFSSLLDRKAERIN
Ga0210399_100668842	3300020581	Soil	MKLPEYPLATPDRVSTREELFQVLELLGGFEEVQGSEPVPACELVACLEAEPTVSPTEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210395_112165241	3300020582	Soil	MKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTSDLLACLETDQTMSPTEILDEVCTSEERLLMEIEPFNSLLSRKAERIN
Ga0210401_106153982	3300020583	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGSEPAPACELLACLEAEPALGSAEILDQATTSEERLLLEIESFSSLLDRKAERIN
Ga0215015_100603452	3300021046	Soil	MKLPEYTPSMSDRVSTREELFELLEVLGGFEQRQKSELAHPGDLLACLEAEPTASPAEILDDISASEEQFLMEMAPFHSLLGAKAESIN
Ga0210404_100992601	3300021088	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEAEPTVSPAEILYQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210404_108520852	3300021088	Soil	MKLPEYAPATADRVSTREELFQVLELLGGFEEVQGTEPDTTSDLFTCLEAEPTVTPVEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210406_100890761	3300021168	Soil	MKLPEYAPATADRVSTREELFLVLELLGGFDEVQGTEPGPTCDLLTCLEAEPTVSPAEILDQVTSSEERLLLEIEPFSSLLDRKA
Ga0210405_101000742	3300021171	Soil	MKLPEYAPSSDRVSTREELFEVLELLGGFDEPQEAELARTRNLLACLDAEPTVSPAEILDEISTSEDRLLMEIEPFNSLLGAKAQRIN
Ga0210405_103340361	3300021171	Soil	ATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEAEPTVSPAEILYQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210405_104900542	3300021171	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210405_107309761	3300021171	Soil	EVKIMKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSEMGQTSDLLACLETDQTMSPTELLDEVCTSEERLLMEIEPFNSLLSRKAERIN
Ga0210405_112480371	3300021171	Soil	PPTADRVSTREELFQVLELLGGFDEVQGTEAGATCDLLTCLEAEPTVSAAEILDQVTTREERLLLEIEPFSSLLDRKAERIN
Ga0210408_103986093	3300021178	Soil	MKQPEYAPSTFDRVSTREELFEVLELVGGFEDLRDTDLDQTGDLLASMEGNQTASPGEILEELCTSEERLLLEIEPFNSLLSRKAERIN
Ga0210383_115825351	3300021407	Soil	MKLPEYAPATADRVSTREELFLVLELLGGFDEVQGTEAGPTCDLFTCLEAEPTVSAAEILDQVTTREERLLLEIEPFSSLLDRKAERIN
Ga0210394_100169155	3300021420	Soil	MKLPEYAPATADRVSTREELFQVLELLGGFEEVQGTEPDTTCDLFTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210394_100313453	3300021420	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPAGDLLACLEGGPTLSPAELLDQATTSEERLLLEIEPFSSLLDRKAERIN
Ga0210394_100355145	3300021420	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPGCDLLACLEGGPTLSPAEILDQATTSEERLLLEIEPFSSLLDRKAERIN
Ga0210394_102374771	3300021420	Soil	MFDRVSTREELFEVLEVLGGFEEPQDSEMGQTSDLLACLETDQTMSPTELLDEVCTSEERLLMEIEPFNSLLSRKAERIN
Ga0210394_108198502	3300021420	Soil	MKLPEYAPPTADRVSTREELFQVLELLGGFDEVQGTEASPTCDLFTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0210384_109786062	3300021432	Soil	MKLPEEYAPSSDRVSTREELFEVLELLGGFDEPQETELARTRNLLACLDAEPTVSPAEILDEISTSEDRLLMEIEPFNSLLGAKAQRIN
Ga0210384_110479231	3300021432	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGEPTLSPAEILDQVTTSEERLLLEIEPFSSLLDR
Ga0210390_103118291	3300021474	Soil	MFDRVSTREELFEVLEVLGGFEEPQDSELGQTSDLLACLETDQTMSPTELLDEVCTSEERLLMEIEPFNSLLSRKAERIN
Ga0187846_100376832	3300021476	Biofilm	MKLPEYAASRSDRASTREELFEVLEVLGGFEEPHETDLDQTGDLLACLESDHAAASTEILEEVCSEERLLMEIEPFNSLLIRKAQRIN
Ga0210410_101801882	3300021479	Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLTCLEGGPTLSPAEILDQATTSEERLLLEIEPFSSLLDRKAERIN
Ga0210410_117764461	3300021479	Soil	TASYSCARRGEIMKQPEYAPSTFDRVSTREELFEVLELVGGFEDLRDTDLDQTGDLLASMEGNQTASPGEILEELCTSEERLLLEIEPFNSLLSRKAERIN
Ga0210409_101075643	3300021559	Soil	MKQPEYAPSTFDRVSTREELFEVLELVGGFEDLRDTDLDQTGDLLACMEGNQTASPGEILEELCTSEERLLLEIEPFNSLLSRKAERIN
Ga0210409_111835402	3300021559	Soil	DRGELMKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEVLDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0242663_10536181	3300022523	Soil	MKLPEYAPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTGDLLASLEADRTMSPAELLDEVCTSEERLLMEIEPFNSLLSRKAERIN
Ga0242656_11378831	3300022525	Soil	EPKNPREHPISVRDRGELMKLPEYAPATPDRVSTREELFQVLELLGGFDEVQGTEAGATCDLLTCLEAEPTVSAAEILDQVTTREERLLLEIEPFSSLLDRKAERIN
Ga0242655_103334041	3300022532	Soil	PKNPGEHLISVRDRGELMKLPEYPLATPDRVSTREELFQVLELLGGFEEVQGSEPVPACELVACLEAEPTVSPTEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0209377_11433902	3300026334	Soil	STREELFEVLEVLGGFDEPQDAEFSQTSELLASPEAEPTVSPVEILDAVTTGEEQLLIEIGAFNSLLERKAERIN
Ga0209648_100090252	3300026551	Grasslands Soil	MKLPEYAPSTFDRASTREELFEVLELLGGFEEPQDPELGQTGDLLACLETDQTASPAELLEDVCTSEERLLLEIEPFNSLLSRKAERIN
Ga0209577_104969251	3300026552	Soil	MKLQGYAPSGSDRASTREELFEVLEVLGGFEEPHETEPDQTGDLLACLEADQTASSADMLEELYTSEERLLMEIEPFNSLLSRKAERVN
Ga0209004_10349221	3300027376	Forest Soil	MKLPEYAPPTSDRASTREELFQVLELLGGFEEVQGTEPAPACELLTCLETEPALSPAESLDQVTTSEERLLLEMEPFGSLLDRKAERIN
Ga0209003_10968271	3300027576	Forest Soil	RGEIMKLPEYAPATPDRASTREELFQVLELLGDFEEVQGTEPAPACELLACLETEPTLSPAETLDQVTTSEERLLLEIEPFSSLLDRKGERIN
Ga0209733_11410702	3300027591	Forest Soil	MKLPEYAPATTDRVSTREELFQVLELLGGFDEVPDTEAAPTCDLFTCLEAEPTVSPAELLDQVTTREERLLLEIEPFS
Ga0209625_10077233	3300027635	Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEILDQVTTSEERLLLEIEPFGSLLDRKAERIN
Ga0209736_10455302	3300027660	Forest Soil	MKLPEYAPATADRVSTREELFQVLELLGGFDEVPGTEAAPTCDLFTCLEAEPTVSPAELLDQVTTREERLLLEIEPFSSLLDRKAERIN
Ga0209073_104413361	3300027765	Agricultural Soil	GEIMKLPGNAPSASDRASTREELFQVLEVLGGFAESHETELDETGELLASLEAEQTASPADLLDDVCSEERLLLELEPFNAIFSRKAERIN
Ga0209166_104681011	3300027857	Surface Soil	MKLPEYAPATADRVSTREELFQVLELLGGFDEVQGTEAAPTCDLFACLEAEPTVSAAEILDQVTTREERLLREIEPFSSLLDRKAERIN
Ga0209167_101619601	3300027867	Surface Soil	MKEKMGEPNDPREHPICVRDRGELMKLPEYAPAAADRVSTREELFQVLELLGGFEEIEGAEPSPTCELFTCLDSEPTVSPAEILDQVTTREERLLLEIEPFSSLLDRKAERIN
Ga0209380_100472211	3300027889	Soil	RGEVMKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPAGDLLACLEGGPTLSPAELLDQATTSEERLLLEIEPFSSLLDRKAERIN
Ga0209526_100460485	3300028047	Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPDPTSDLFTCLEAEPTVSPVEIFDQVTTSEERLLLEIEPFSSLLVRKAERIN
Ga0209526_101673702	3300028047	Forest Soil	TPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEILDQVTTSEERLLLEIEPFGSLLDRKAERIN
Ga0209526_107570881	3300028047	Forest Soil	MKLPEYAPSMSDRASTREELFEVLELLGGFEELQGTGPAQTCDLLACMEADVTASSAEVLEEVSAGDERFLMEMETFNSLLARKA
Ga0137415_101235442	3300028536	Vadose Zone Soil	MKLPEYAPSTSDRASTREELSEVLELLGGFDEPQDTEFAQTSELLASLEVTVSTVEILDAVTTSEEQLLIEIGAFNSLLERKAERIN
Ga0222749_101562011	3300029636	Soil	ELMKLPEYAPATADRVSTREELFQVLELLGGFEEVQGTEPDTTSDLFTCLEAEPTVTPVEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0307482_12986042	3300030730	Hardwood Forest Soil	MKLPEYAPSMPSMFDRVSTREELFEVLEVLGGFEEPQDSELGQTGDLLASLEADRTMSPAELLDEVCTSEERLLMEIEPFNSLLSRKAERIN
Ga0307482_13075151	3300030730	Hardwood Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGPEPAPACDLLTCLEGEPTLSPAEILDQATTSEERLLLEIEPFTSLLDRKAERIN
Ga0170834_1117112411	3300031057	Forest Soil	EIMKLPEYAPSMSDRASTREELFEVLELLGGFEEPQGTGPAQTCDLLACMEADATASSAEVLDEVSAGDERFLMEMETFNSLLARKAERIN
Ga0170824_1208272122	3300031231	Forest Soil	EIMKLPEYAPSMSDRASTREELFEVLELLGGFEEPQGTGQAQTCDLLACMEADATASSAEVLDEVSAGDERFLMEMETFNSLLARKAERIN
Ga0307483_10396381	3300031590	Hardwood Forest Soil	NPREHPISVRDRGELMKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEVLDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0307483_10413341	3300031590	Hardwood Forest Soil	GEIMKQPEYAPSTFDRVSTREELFEVLELVGGFEDLRDTDLDQTGDLLASMEGNQTASPGEILEELCTSEERLLLEIEPFNSLLSRKAERIN
Ga0307484_1173131	3300031663	Hardwood Forest Soil	GEPKNPREHPISVRDRGELMKLPEYAPATPDRVSTREELFQVLELLGGFKEVQGTEPAPACDLLTCLEAEPTVSPAEILDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0307469_108873791	3300031720	Hardwood Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGIEPAPACELLACLEGGPTLSPAEILEQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0307477_106142561	3300031753	Hardwood Forest Soil	MRLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPARELLECLEADPTLRPAEILDEATTSEERLLL
Ga0307475_104510251	3300031754	Hardwood Forest Soil	MKLPEYALSTSDRVSTREELFEVLELLGGFDEPQETELARTRNLLACLDAEPTVSPAEILDEISTSEDRLLMEIEPFNSLLGAKAQRIN
Ga0307475_108346881	3300031754	Hardwood Forest Soil	MKLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPACDLLACLEGGPTLSPAEVLDQVTTSEERLLLEIEPFSSLLDRKAERIN
Ga0307475_113125411	3300031754	Hardwood Forest Soil	APATPDRVSTREELFQVLELLGGFEEVQGPEPAPACDLLTCLEGEPTLSPAEILDQATTSEERLLLEIEPFTSLLDRKAERIN
Ga0307473_115396171	3300031820	Hardwood Forest Soil	MKLPEYAPSMSDRASTREELFEVLELLGGFEEPQGTGQAQTCDLLACMEADATASSAEVLDEVSAGDERFLMEMETFNSLLARKAERIN
Ga0307478_105301792	3300031823	Hardwood Forest Soil	MFDRVSTREELFEVLEVLGGFEEAQDSELGQTGDLLACLETDQTMSPTELLDEVFTSEERLLMEIEPFNSLLSRKAERIN
Ga0307478_111886741	3300031823	Hardwood Forest Soil	MKLPECAPATADRVSTREELFQVLELLGGFEEVQGTEPDTTCDLFTCLEAEPTVSPAEILDQVTSNEERLLLEIEPFSSLLERKAERIN
Ga0307479_100743073	3300031962	Hardwood Forest Soil	MKLPEYAPSTFDRVSTREELFEVLELIGGFEDPHDAELDQTGELLASLEADQTASPTEILEEVYTTEERLLLEIEPFNSLLSRKAERIN
Ga0307479_100765303	3300031962	Hardwood Forest Soil	MRLPEYAPATPDRVSTREELFQVLELLGGFEEVQGTEPAPARELLECLEADPTLRPAEILDEATTSEERLLLEIEPFSSLLDRKAERIN
Ga0307471_1004524093	3300032180	Hardwood Forest Soil	MNLPEYAPSASDRASTREELFEVLEVLGGFEEPHETDLDQTGELLACLEADRTASPIDMLEEVCSEERLLMEIEPFNSLLSRKAERIN
Ga0307471_1022862612	3300032180	Hardwood Forest Soil	MKLPEYALATPDRVSTREELFQVLELLGGFQEIQGSEPAPACELLACLEAEPTLSPAEILDQATTSEERLLLEIEPFRSLLDRKAERIN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077649

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences