NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077674

Metagenome / Metatranscriptome Family F077674

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077674
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 58 residues
Representative Sequence RRLDNDDIHVIPMAYGKNKGRFRETRVGRFDPNMGAVEAPVKSTDVESTIDGTPSLSKKL
Number of Associated Samples 97
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.87 %
% of genes near scaffold ends (potentially truncated) 83.76 %
% of genes from short scaffolds (< 2000 bps) 88.89 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (68.376 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(16.239 % of family members)
Environment Ontology (ENVO) Unclassified
(17.949 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.120 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF01751Toprim 17.95
PF01638HxlR 14.53
PF02525Flavodoxin_2 8.55
PF02481DNA_processg_A 5.98
PF00106adh_short 5.13
PF13561adh_short_C2 1.71
PF02660G3P_acyltransf 0.85
PF02569Pantoate_ligase 0.85
PF04138GtrA 0.85
PF13751DDE_Tnp_1_6 0.85
PF01425Amidase 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 14.53
COG0758Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptakeReplication, recombination and repair [L] 11.97
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.85
COG0344Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferaseLipid transport and metabolism [I] 0.85
COG0414Panthothenate synthetaseCoenzyme transport and metabolism [H] 0.85

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.38 %
UnclassifiedrootN/A31.62 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908044|A5_c1_ConsensusfromContig67261All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei763Open in IMG/M
3300000567|JGI12270J11330_10022801All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii3825Open in IMG/M
3300001471|JGI12712J15308_10050914All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1051Open in IMG/M
3300001538|A10PFW1_11651598Not Available707Open in IMG/M
3300001593|JGI12635J15846_10246334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1150Open in IMG/M
3300001593|JGI12635J15846_10452716Not Available765Open in IMG/M
3300001593|JGI12635J15846_10491206All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium726Open in IMG/M
3300001593|JGI12635J15846_10685125Not Available591Open in IMG/M
3300001661|JGI12053J15887_10251146Not Available879Open in IMG/M
3300002245|JGIcombinedJ26739_100205483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1861Open in IMG/M
3300002245|JGIcombinedJ26739_100302744All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1483Open in IMG/M
3300002914|JGI25617J43924_10349970Not Available512Open in IMG/M
3300003369|JGI24140J50213_10008168All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00694047Open in IMG/M
3300004082|Ga0062384_100981390Not Available603Open in IMG/M
3300004091|Ga0062387_100662823Not Available758Open in IMG/M
3300004091|Ga0062387_101578520Not Available529Open in IMG/M
3300005434|Ga0070709_10826396All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium aquaticum728Open in IMG/M
3300005436|Ga0070713_101970137All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales567Open in IMG/M
3300005436|Ga0070713_102333489All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii518Open in IMG/M
3300005541|Ga0070733_10000094All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium81434Open in IMG/M
3300005602|Ga0070762_10382410All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium903Open in IMG/M
3300005602|Ga0070762_11206368Not Available523Open in IMG/M
3300005938|Ga0066795_10162018All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium aquaticum666Open in IMG/M
3300006047|Ga0075024_100615416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae586Open in IMG/M
3300006050|Ga0075028_100695704Not Available611Open in IMG/M
3300006050|Ga0075028_100993579Not Available522Open in IMG/M
3300006052|Ga0075029_100922918Not Available599Open in IMG/M
3300006173|Ga0070716_100622497All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300006175|Ga0070712_100173813All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1673Open in IMG/M
3300006176|Ga0070765_100758838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium916Open in IMG/M
3300006176|Ga0070765_102058581All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii533Open in IMG/M
3300006638|Ga0075522_10109247All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1486Open in IMG/M
3300006642|Ga0075521_10267198All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium aquaticum820Open in IMG/M
3300006795|Ga0075520_1438040Not Available520Open in IMG/M
3300006903|Ga0075426_10800034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium709Open in IMG/M
3300006950|Ga0075524_10247032Not Available779Open in IMG/M
3300006954|Ga0079219_11867729Not Available565Open in IMG/M
3300007255|Ga0099791_10030457All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2367Open in IMG/M
3300007258|Ga0099793_10087088All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii1432Open in IMG/M
3300007788|Ga0099795_10039243All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1675Open in IMG/M
3300007819|Ga0104322_138897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2139Open in IMG/M
3300009029|Ga0066793_10573175Not Available643Open in IMG/M
3300009038|Ga0099829_11524291Not Available552Open in IMG/M
3300009650|Ga0105857_1224434All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae553Open in IMG/M
3300009662|Ga0105856_1145049All Organisms → cellular organisms → Bacteria → Proteobacteria719Open in IMG/M
3300010159|Ga0099796_10009094All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2675Open in IMG/M
3300010159|Ga0099796_10196439All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium816Open in IMG/M
3300010379|Ga0136449_104439797Not Available517Open in IMG/M
3300010396|Ga0134126_10383584All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1634Open in IMG/M
3300010396|Ga0134126_11850257Not Available661Open in IMG/M
3300010877|Ga0126356_10586696All Organisms → cellular organisms → Bacteria → Proteobacteria503Open in IMG/M
3300010880|Ga0126350_10924517All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691985Open in IMG/M
3300011269|Ga0137392_10812208All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii772Open in IMG/M
3300011269|Ga0137392_11145671All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae635Open in IMG/M
3300011270|Ga0137391_11125173Not Available633Open in IMG/M
3300012096|Ga0137389_11421653Not Available589Open in IMG/M
3300012354|Ga0137366_10903615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii621Open in IMG/M
3300012582|Ga0137358_10859715Not Available598Open in IMG/M
3300012927|Ga0137416_10730376Not Available872Open in IMG/M
3300012958|Ga0164299_11254896All Organisms → cellular organisms → Bacteria → Proteobacteria564Open in IMG/M
3300014169|Ga0181531_10825241Not Available579Open in IMG/M
3300014501|Ga0182024_10652523All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1307Open in IMG/M
3300014838|Ga0182030_10816841All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii850Open in IMG/M
3300015053|Ga0137405_1274744Not Available509Open in IMG/M
3300015206|Ga0167644_1112866Not Available777Open in IMG/M
3300015242|Ga0137412_10250783All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1400Open in IMG/M
3300015245|Ga0137409_10300358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi1411Open in IMG/M
3300017974|Ga0187777_11321622Not Available530Open in IMG/M
3300018025|Ga0187885_10486735All Organisms → cellular organisms → Bacteria → Proteobacteria550Open in IMG/M
3300019789|Ga0137408_1078302All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1196Open in IMG/M
3300019870|Ga0193746_1035347Not Available503Open in IMG/M
3300020060|Ga0193717_1116616All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi825Open in IMG/M
3300020580|Ga0210403_11224553All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium577Open in IMG/M
3300020582|Ga0210395_10752965All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi727Open in IMG/M
3300020583|Ga0210401_10821912All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei789Open in IMG/M
3300021170|Ga0210400_10211404All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1579Open in IMG/M
3300021170|Ga0210400_11187986Not Available615Open in IMG/M
3300021180|Ga0210396_10382820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1238Open in IMG/M
3300021180|Ga0210396_11718460Not Available509Open in IMG/M
3300021477|Ga0210398_10529117All Organisms → cellular organisms → Bacteria → Proteobacteria959Open in IMG/M
3300021479|Ga0210410_10953315All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium746Open in IMG/M
3300021479|Ga0210410_11088226All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi689Open in IMG/M
3300025484|Ga0208587_1085605All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium aquaticum645Open in IMG/M
3300025857|Ga0209014_10278041Not Available544Open in IMG/M
3300025939|Ga0207665_10949320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii683Open in IMG/M
3300026557|Ga0179587_10110657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi1673Open in IMG/M
3300027575|Ga0209525_1129092Not Available587Open in IMG/M
3300027587|Ga0209220_1012024All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2307Open in IMG/M
3300027591|Ga0209733_1172417All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii516Open in IMG/M
3300027603|Ga0209331_1025442All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1530Open in IMG/M
3300027645|Ga0209117_1001062All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium10053Open in IMG/M
3300027651|Ga0209217_1072128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi1012Open in IMG/M
3300027671|Ga0209588_1079323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi1061Open in IMG/M
3300027817|Ga0209112_10131732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium828Open in IMG/M
3300027908|Ga0209006_10060856All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3377Open in IMG/M
3300027908|Ga0209006_10075614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2999Open in IMG/M
3300027908|Ga0209006_10363005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1225Open in IMG/M
3300027908|Ga0209006_10531021All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium978Open in IMG/M
3300027910|Ga0209583_10010635All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei2714Open in IMG/M
3300027910|Ga0209583_10070958All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1278Open in IMG/M
3300027915|Ga0209069_10331490All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300027915|Ga0209069_10415684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium740Open in IMG/M
3300028813|Ga0302157_10578878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii580Open in IMG/M
3300029882|Ga0311368_10188860All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium aquaticum1643Open in IMG/M
3300029883|Ga0311327_10880501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium518Open in IMG/M
3300029916|Ga0302148_1170282Not Available615Open in IMG/M
3300029997|Ga0302302_1212279All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium aquaticum725Open in IMG/M
3300030520|Ga0311372_11984444All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi683Open in IMG/M
3300030991|Ga0073994_12415247All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium540Open in IMG/M
3300031128|Ga0170823_15585696Not Available537Open in IMG/M
3300031708|Ga0310686_110758246All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oropedii520Open in IMG/M
3300031718|Ga0307474_11633083All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium506Open in IMG/M
3300031805|Ga0318497_10227082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi1033Open in IMG/M
3300033486|Ga0316624_11662228Not Available589Open in IMG/M
3300034163|Ga0370515_0248467All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium yuanmingense755Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.24%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil16.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.11%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds6.84%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil5.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.42%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.42%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.56%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.56%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.56%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.71%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.71%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil1.71%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.71%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.85%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.85%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.85%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.85%
Permafrost SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil0.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.85%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.85%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.85%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.85%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.85%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.85%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.85%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.85%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.85%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.85%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908044Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5EnvironmentalOpen in IMG/M
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001538Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300003369Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22AEnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006795Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-BEnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006950Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-oneEnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300007819Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 SoapdenovoEnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061EnvironmentalOpen in IMG/M
3300009662Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010877Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015206Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018025Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019870Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m1EnvironmentalOpen in IMG/M
3300020060Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300025484Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025857Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029916Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1EnvironmentalOpen in IMG/M
3300029997Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A5_c1_003431102124908044SoilDRLGFRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFDPNMGAEAAPVKWTDVERGSGDRDLVSERL
JGI12270J11330_1002280173300000567Peatlands SoilMAYGENKGRFRETRVGRFDPNMGGEAVPVKSTDVESTLKGTPILSKKL*
JGI12712J15308_1005091433300001471Forest SoilMAYGENKGRFRETRVGRFEANMGAAEASVKSPDVERILGGSVLPSKKL*
A10PFW1_1165159823300001538PermafrostVXXXXHVIPMAYGKNKGRFREIRVGRFISNMGAAEAPVKSTDVEEAPDDQAIVSEKL*
JGI12635J15846_1024633423300001593Forest SoilMAYGKNKGRFRGTRVGRFDPNMGAPEAPVKSTAVESSIGGIPFLSEKL*
JGI12635J15846_1045271633300001593Forest SoilMAYGENKGRFREIRVGRFVPNMGAAEPPVKWTDIDQASNAPDLLSKKL*
JGI12635J15846_1049120613300001593Forest SoilIFVDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFVPNMGAAEPPVKWTDIDQASNAPDLLSKKL*
JGI12635J15846_1068512513300001593Forest SoilLGLRRRLDNDDIHVIPMAYGKNKGRFRETRVGRFVPNMGAREAPVKSPEVERVPGADSFASKKL*
JGI12053J15887_1025114623300001661Forest SoilDRLGFRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFAWNMGAEEATVKSTDIEGVSGGHSILSKRL*
JGIcombinedJ26739_10020548343300002245Forest SoilRRRLDNDDIHVIPMAYGENKGRFRETRVGRFEANMGAAEASVKSPDVERILGGSVLPSKKL*
JGIcombinedJ26739_10030274443300002245Forest SoilRLDNDDIHVIPMAYGENKGRFRETRVGRFAANMGAEGAGVKSTDVEAVPDGCLLLTEEL*
JGI25617J43924_1034997013300002914Grasslands SoilGFRRRLDNDDIHVIPMAYGKNKGRFRETRVGRFAPNMGAEEPPVKSTDIEGVAEGRDLVSKKL*
JGI24140J50213_1000816863300003369Arctic Peat SoilRLDNDDIHVIPMAYGKNKGRFREIRVGRFISNMGAAEAPVKSTDVEEAPHDQAIVSEKL*
Ga0062384_10098139023300004082Bog Forest SoilLGFRRRLDNDDIHVIPIAYGKNKGRFRETRVGRFRANMGAVGPGVKSPDVELTSDGSVLPSKKL*
Ga0062387_10066282323300004091Bog Forest SoilKGRFRGTRVGRFDPNMGGEGAPVKSTDVESTFETIQSLSKKL*
Ga0062387_10157852023300004091Bog Forest SoilKGRFRGTRVGRFDPNMGGEGPPVKSTDVESTFEAIQSLSKKL*
Ga0070709_1082639613300005434Corn, Switchgrass And Miscanthus RhizosphereMAYGKNKGRFREIRVGRFAPNMGAAKPPVKWTDVDQAPDTPDLLSKKL*
Ga0070713_10197013713300005436Corn, Switchgrass And Miscanthus RhizosphereKNKGRFREIRVGRFAANMGAAALPVKSTDVEGILAGPELRSKKL*
Ga0070713_10233348913300005436Corn, Switchgrass And Miscanthus RhizosphereIFVDRLGFRRRLHNDDIHVIPRVYGKNKGRFREIRASRSDPNMGAEALAVKSTDVETARKVAGLVS*
Ga0070733_10000094133300005541Surface SoilMAYGKNKGRFREIRVGRFDPNMGGEAVPVKSTDVESTLKGTSVLSKKL*
Ga0070762_1038241023300005602SoilMAYGKNKGRFRETRVGRFEANMGAAEASVKSPDVESTPGGSVLPSKKL*
Ga0070762_1120636823300005602SoilIFVDRLGFRRRLDNDDIHVIPMAYGKNKGRFRGTRVGRAVSNMGVARVPVKSTDFEGGANGRAALSEKL*
Ga0066795_1016201813300005938SoilMAYGKNKGRFRETRVGRFVPNMGGEAAPVKSTDVERDPDDPDLVSKKL*
Ga0075024_10061541633300006047WatershedsRRLDNDDIHVIPMAYGKNKGRFRETRVGRFDPNMGAVEAPVKSTDVESTIDGTPSLSKKL
Ga0075028_10069570423300006050WatershedsQIFVDRLGLRRRLDNDDIHVIPMAYGKNKGRFRGTRVGPDDPNMGGVKAPVKSTDVENGLGGVRLLSKKL*
Ga0075028_10099357923300006050WatershedsFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFPPNMGGEEVPVKSTDVEGTPEGIPDLSKKL*
Ga0075029_10092291813300006052WatershedsQIFVDRLGFRRRLDNDDIHVIPMAYGKNKGRFRGTRVGRFDPNMGGEEAPVKSTDVESTSETNPSLSKKL*
Ga0070716_10062249723300006173Corn, Switchgrass And Miscanthus RhizosphereDIHVIPMAYGKNKGRFRGIRVGRFVPNMGGEDAAVKSTDIQGVPDDWAHISKKL*
Ga0070712_10017381333300006175Corn, Switchgrass And Miscanthus RhizosphereIFVDRLGFGRRLDNDDIHVIPIVYGKNEGRFRGTRVGRSSANMGGEEPPVKSTDVESTL*
Ga0070765_10075883833300006176SoilMAYGENKGRFRETRVGRFEANMGAAEASVKSPDVESILGGSVLPSKKL*
Ga0070765_10205858113300006176SoilRRLDNDDIHVIPMAYGKNKGRFREIRVGRFDPNMGALAPGVKSTDVESLLKTAPRKAVLGP*
Ga0075522_1010924733300006638Arctic Peat SoilMAYGKNKGRFREIRVGRFAPNMGGEGSAVKSTDVEGGPDGRPARSNKL*
Ga0075521_1026719823300006642Arctic Peat SoilMAYGKNKGRFRGIRVGRFVPNMGAAEAPVKWTDVDWGSGDADLLSKKL*
Ga0075520_143804023300006795Arctic Peat SoilFRWRLDNDDIHVIPMAYGKNKGRFREIRVGRFISNMGAAEAPVKSTDVEEAPDDQAIVSEKL*
Ga0075426_1080003433300006903Populus RhizosphereDIHVIPMAYGENKGRFREIRASPFDPNMGGDAASVKSTDVESTVWDRPSLSKKL*
Ga0075524_1024703223300006950Arctic Peat SoilMAYGKNKGRFRETRVGRFVPNMGAQEAPVKSPDVERVAGACPIVSKKL*
Ga0079219_1186772923300006954Agricultural SoilMSYGENKGRFREIRASPFDPNMGGDAASVKSTDVESTVWDRPSLSKKLWNTP*
Ga0099791_1003045713300007255Vadose Zone SoilQILVDRLGFRRRLDNDDIHVIPMAYGENKGRFRKIRVGRFAANMGVAEAPVKSTDVERASCGYGLLYERL*
Ga0099793_1008708843300007258Vadose Zone SoilGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFAANMGVAEAPVKSTDVERAPAVTGYYTKGC*
Ga0099795_1003924343300007788Vadose Zone SoilGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFAGNMGVAEAPVKSTDVERASRGYGLLYERF*
Ga0104322_13889743300007819Permafrost SoilLDNDDIHVIPMAYGKNKGRFRETRVGRFDRNMGAEEAPVKSTDVESTIDGSPSLSKKL*
Ga0066793_1057317513300009029Prmafrost SoilRLDNDDIHVIPMAYGKNKGRFRETRVGRFVPNMGAQEAPVKSPDVERVARACPIVSKKL*
Ga0099829_1152429123300009038Vadose Zone SoilGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFEGNMGVAGPPVKSTDVEGGREQGESVSKKLKSAS*
Ga0105857_122443413300009650Permafrost SoilGAQIFVDRLGFRRRLDNDDIHVIPTAYGKNKGRFREIRVGRFDPNMGAEAAPVKWTDVERGSGDRDLVSERL*
Ga0105856_114504923300009662Permafrost SoilRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFISNMGAAEAPVKSTDVEEAPHDQAIVSEKL*
Ga0099796_1000909463300010159Vadose Zone SoilDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFAANMGVAEAPVKSTDVERAPAVTGYYTKGC*
Ga0099796_1019643913300010159Vadose Zone SoilIDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFAGNMGVAEAPVKSTDVERASRGYGLLYERF*
Ga0136449_10443979713300010379Peatlands SoilVIPMAYGKNKGRFRETRVGRFNPNMGAEAAPVKSTDVESTVGGTPSLSKKLRNTS*
Ga0134126_1038358433300010396Terrestrial SoilMAYGKNKGRFREIRVGRFVSNMGAAEAPVKSTDVEEEPDDQAIVSKKL*
Ga0134126_1185025713300010396Terrestrial SoilIPMAYGKNKGRFREIRVGPFDPNMGAAEVAVKSTDVDEVLRRCGFPSKKL*
Ga0126356_1058669613300010877Boreal Forest SoilMAYGKNKGRFREIRVGRFVSNMGAAKAPVKSTDFEGTPNGQGIASKKVVK
Ga0126350_1092451713300010880Boreal Forest SoilRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFAANMGAAEVPVKSTDVEGVPDHPCLASKKL*
Ga0137392_1081220833300011269Vadose Zone SoilLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFEGKMGVAGPPVKSTDVEGGREQGESVSKKLKSAS*
Ga0137392_1114567133300011269Vadose Zone SoilGFRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFVPNMGAAEPPVKWTDVDWASGDLGFISKKL*
Ga0137391_1112517333300011270Vadose Zone SoilLIDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFEGKMGVAGPPVKSTDVEGGREQGESVSKKLKSAS*
Ga0137389_1142165313300012096Vadose Zone SoilRLGFRRRLDNDDIHVIPMAYGKNKGRFRETRVGRFVPNMGGEGPPVKSTDVEGGAEGCKVLSKKL*
Ga0137366_1090361523300012354Vadose Zone SoilDRLGLRRRLNNDDIHVIPMAYGENKGRFREIRIGRFAANMGGEGGPVKSTDVERVPTRPGIVSKKLQNTR*
Ga0137358_1085971523300012582Vadose Zone SoilAQILIDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFAGNMGVAEAPVKSTDVERASRGWELLYEGL*
Ga0137416_1073037623300012927Vadose Zone SoilDNDDIHVIPMAYGENKGRFRGIRVGRFVGNMGVARAPVKSTDVERARDGPEPVSERLRIAS*
Ga0164299_1125489613300012958SoilMAYGKNKGRFREIRVGRFVSNMGAAKAPVKSTDVEETPNGQGIASKK
Ga0181531_1082524113300014169BogIHVIPIAYGKNKGRFRGTRVGRFEPNMGAAEASVKSPDVESTPGGGVLPSKKL*
Ga0182008_1021369113300014497RhizosphereMAYGENKGRFREIRASPFDPNMGGEAASVKSTDVESTVWDRPSLSKKL*
Ga0182024_1065252333300014501PermafrostHVIPMAYGENKGRFREIRVGRFAPNMGALAPGVKSTDVEGTPVGRCPGFIKL*
Ga0182030_1081684113300014838BogIFVDRLGFRRRLDNDDIHVIPIAYGENKGRFRETRVGRFEPNMGAAEAPVKSPDVELTLDGSVLPSKKL*
Ga0137405_127474423300015053Vadose Zone SoilFVDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFDANMGVAEAPVKSTDVEGACRGYGVLYEGL*
Ga0167644_111286623300015206Glacier Forefield SoilFRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFVSNMGAAEAPVKSTDVEEAPDDQAIVSEKL*
Ga0137412_1025078313300015242Vadose Zone SoilIDRLGFRRRLDNDDIHVIPMAYGENKGRFRETRVGRFAANMGAEGAGVKSTDVEAVPDGCLLLTEKL*
Ga0137409_1030035813300015245Vadose Zone SoilVDRLGFRRRLDNDDIHVIPMAYGENKGRFRETRVGRFGANMGVAEAPVKSTDVERACRGYGVLYEGL*
Ga0187777_1132162223300017974Tropical PeatlandRLGLGRRLDNDDIHVIPMAYGRNEGRYRETRASRVEANMGGEEAPVKSTDVESRVGWVGSISKKL
Ga0187885_1048673523300018025PeatlandMAYGKNKGRFREIRVGRFIWNMGAAEAPVKSTDFEGGANGRAALSEKL
Ga0137408_107830213300019789Vadose Zone SoilRRRLHNHDIHVIPMAYGKNKGRFRGTRVGRFDPNMGAPKAPVKSTTVERSIGGIPILSEK
Ga0193746_103534723300019870SoilILVDRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFAGNMGVAEAPVKSTDVERASRGYGLLYERF
Ga0193717_111661633300020060SoilDIHVIPIAYGKNKGRFRETRVGRFEANMGAGEASVKSPDVELAPDGSVLPSKKL
Ga0210403_1122455313300020580SoilIPMAYGKNKGRFRGTRVGRFDSNMGAQKRPVKSTDVESTPEGTPILSKKL
Ga0210395_1075296513300020582SoilHNYDIHVIPMAYGKNKGRFRGTRVGRFDPNMGAPEAPVKSTAVESSIGGIRFLSEKL
Ga0210401_1082191233300020583SoilRLGLGRRFDNDDIHVIPMAYGKNKGRFREIRVGRFVPNMGAAEPPVKWTDVDWASRDLELISKKL
Ga0210400_1021140413300021170SoilLGFRRRLDNDDIHVIPMAYGKNKGRFRETRVGRFEANMGAAEASVKSADVTSTLCGSTLPSKKL
Ga0210400_1118798623300021170SoilLHNHDIHVIPMAYGKNKGRFRGTRVGRFDPNMGAPEAPVKSTAVESSIGGIPFLSEKL
Ga0210396_1038282033300021180SoilDRLGFRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFAANMGAAEVAVKSTDVEGVPDQPCLASKKL
Ga0210396_1171846013300021180SoilPMAYGKNKGRFRETRVGRFEANMGAAEASVKSADVTSTLCGSTLPSKKL
Ga0210397_1075787013300021403SoilGKNEGRFRETRVGRFDPNMGGEAVPVKSTDVESVLECTPVLSKKW
Ga0210398_1052911713300021477SoilDRLGFRRRLDNDDIHVIPMAYGKNEGRFRETRVGRFDPNMGGEAVPVKSTDVESVLECTPVLSKKW
Ga0210410_1095331513300021479SoilHDILVIPMAYGKNKGRFRGTRVGRFDPNMGAPEAPVKSTSVESSIGGIPFLSEKL
Ga0210410_1108822613300021479SoilPMAYGKNKGRFRGTRVGRFDPNMGAPEAPVKSTAVESSVGGIRFLSEKL
Ga0208587_108560513300025484Arctic Peat SoilMAYGKNKGWFREIRVGRFVPNMGAAEPPVKSTDVDGASKDPGFISKKV
Ga0209014_1027804123300025857Arctic Peat SoilDDIHVIPMAYGKNKGRFRETRVGRFVPNMGAQEAPVKSPDVERVARACPIVSKKL
Ga0207665_1094932023300025939Corn, Switchgrass And Miscanthus RhizosphereDIHVIPMAYGKNKGRFRGIRVGRFVPNMGGEDAAVKSTDIQGVPDDWAHISKKL
Ga0179587_1011065753300026557Vadose Zone SoilRLGFRRRLDNDDIHVIPMAYGKNKGRFRGTRVGRFDPNMGAQEAPVKSTDVESTSEGTLILSKKL
Ga0209525_112909213300027575Forest SoilRRRLDNDDIHVIPMAYGKNKGRFRETRVGRFEANMGAAEASVKSPDVERILGGSVLPSKK
Ga0209220_101202413300027587Forest SoilLVDRLGLRRRLDNDDIHVIPMAYGKNKGRFRETRVGRFAANMGAEEAPVKSTDVEGAGGGSPLLPKKL
Ga0209733_117241713300027591Forest SoilDIHVIPMAYGKNKGRFREIRVGRFAANMGGEGAPVKSTDVEGALKGADLVSKKL
Ga0209331_102544243300027603Forest SoilIFVDRLGFRRRLDNDDIHVIPMAYGENKGRFRETRVGRFAANMGAEGAGVKSTDVEAVPDGCLLLTEEL
Ga0209117_100106213300027645Forest SoilYGKNKGRFRETRVGRFAANMGAEEAPVKSTDVEGAGGGSPLLPKKL
Ga0209217_107212833300027651Forest SoilRLDNDDIHVIPMAYGKNKGRFRETRVGRFAPNMGAEEPPVKSTDIEGVAEGRDLVSKKL
Ga0209588_107932313300027671Vadose Zone SoilRLGFRRRLDNDDIHVIPMAYGENKGRFREIRVGRFDANMGVAEAPVKSTDVEGACRGYGVLCEGL
Ga0209112_1013173233300027817Forest SoilVDRLGFRRRLDNDDIHVIPMAYGENKGRFRETRVGRFEPNMGAEEASVKSPDVEATTGGNVLPSKKL
Ga0209006_1006085613300027908Forest SoilGFRRRLDNDDIHVIPMAYGKNKGRFREIRVGRFASNMGAAEAPVKSTDVEEAPEEQSIVS
Ga0209006_1007561413300027908Forest SoilDIHVIPMAYGKNKGRFREIRVGRFAANMGAAEVAVKSTDVEGVPDQPCLASKKL
Ga0209006_1036300513300027908Forest SoilDDIHVIPMAYGENKGRFRETRVGRFEANMGAAEASVKSPDVERILGGSVLPSKKL
Ga0209006_1053102113300027908Forest SoilDDIHVIPMAYGENKGRFRETRVGRFEANMGAADASVKSPDVESIPGGSVIPSQKL
Ga0209583_1001063513300027910WatershedsLDNDDIHVIPMAYGKNKGRFREIRVGRFVPNMGAAEPPVKWTDVDQAPSAAALLSKKL
Ga0209583_1007095813300027910WatershedsLDNDDIHVIPMAYGKNKGRFREIRVGRFVPNMGAQRPPVKSTDIEEGPSGPESASSKL
Ga0209069_1033149023300027915WatershedsLDNDDIHVIPMAYGKNKGRFREIRVGRFVPNMGAAEPPVKWTDVDRAPSAASLLSKKL
Ga0209069_1041568413300027915WatershedsAYGKNKGRFRETRVGRFDPNMGAVEAPVKSTDVESTIDGTPSLSKKL
Ga0302157_1057887823300028813BogDIHVIPMVYGKNKGRFRETRVGRFVSNMGAAKPPVKSTDVERGSNGLQVISEKL
Ga0311368_1018886013300029882PalsaMAYGKNKGRFRETRVGRFEANMGAAKASVKSPDVESTPGGSVLPSKKL
Ga0311327_1088050123300029883BogTEIFVDRLGFRRRLDNDDIHVIPIAYGENKGRFRETRVGRFEPNMGAAEAPVKSPDVELTLDGSVLPSKKL
Ga0302148_117028223300029916BogNDDIHVIPMAYGENKGRFRGIRVGRFGSNMGAAEASVKSADGEGAPDGCDLVSRKLRNTS
Ga0302302_121227923300029997PalsaMAYGKNKGRFRETRVGRFEANMGAAKASVKSPDVESTPGGSVLPSKK
Ga0311372_1198444433300030520PalsaHVIPMAYGKNKSRFRETRVGRFAANMGAADASVKSRDVESASSGSALPSKKL
Ga0073994_1241524723300030991SoilAQIFVDRLGFRRRLDNDDIHVIPMAYGENKGRVRETRVGRFAGNMGVAEAPVKSTDVERACRGYGVLYEGL
Ga0170823_1558569623300031128Forest SoilIPMAYGKNKGRFRETRVGRFRANMGAVGPGVKSPDVELTPDGSVLPSKKL
Ga0310686_11075824623300031708SoilIHVIPMAYGKNKGRFREIRVGRFASNMGAAEASVKSTDVEEAPEEQGIVS
Ga0307474_1163308323300031718Hardwood Forest SoilLDNDDIHVIPLAYGKNKRRFREIRVGRFSSNMGAAEAPVKSTDVEEAPDGQGIVSKKL
Ga0318497_1022708213300031805SoilIFVDRLGFGRRLDNDDIHVIPKAYGKNKGRFRGTRVGRFDPNMGGEEPPVKSTDVESTP
Ga0316624_1166222823300033486SoilGKNKGRFREIRVGRFAPNMGAAEAPVKWTDVDQAPDTPAFLSGKLWFAS
Ga0370515_0248467_521_7543300034163Untreated Peat SoilQNLEGGAQIFVDRLGLGRRLDNNDIHVIPMAYGENKGRFRETRVGRFGFNMGVASAPVKSTDVEGARNNALSLSGKL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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