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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F077850 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 117 |
| Average Sequence Length | 47 residues |
| Representative Sequence | SASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Number of Associated Samples | 105 |
| Number of Associated Scaffolds | 117 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.85 % |
| % of genes near scaffold ends (potentially truncated) | 99.15 % |
| % of genes from short scaffolds (< 2000 bps) | 95.73 % |
| Associated GOLD sequencing projects | 102 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.51 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (75.214 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.513 % of family members) |
| Environment Ontology (ENVO) | Unclassified (20.513 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (52.991 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 23.29% β-sheet: 0.00% Coil/Unstructured: 76.71% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 117 Family Scaffolds |
|---|---|---|
| PF00330 | Aconitase | 81.20 |
| PF13668 | Ferritin_2 | 2.56 |
| PF01494 | FAD_binding_3 | 0.85 |
| PF00793 | DAHP_synth_1 | 0.85 |
| PF00694 | Aconitase_C | 0.85 |
| COG ID | Name | Functional Category | % Frequency in 117 Family Scaffolds |
|---|---|---|---|
| COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | Energy production and conversion [C] | 1.71 |
| COG0665 | Glycine/D-amino acid oxidase (deaminating) | Amino acid transport and metabolism [E] | 0.85 |
| COG0578 | Glycerol-3-phosphate dehydrogenase | Energy production and conversion [C] | 0.85 |
| COG0644 | Dehydrogenase (flavoprotein) | Energy production and conversion [C] | 0.85 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 75.21 % |
| All Organisms | root | All Organisms | 24.79 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 20.51% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 13.68% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 8.55% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.98% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 5.13% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.13% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 4.27% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.27% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 3.42% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.42% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.56% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.56% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.56% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 1.71% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.71% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 1.71% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.85% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.85% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.85% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.85% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.85% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.85% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.85% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.85% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 0.85% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.85% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 0.85% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.85% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 0.85% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.85% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001398 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 | Environmental | Open in IMG/M |
| 3300003368 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005178 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 | Environmental | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005557 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 | Environmental | Open in IMG/M |
| 3300005576 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 | Environmental | Open in IMG/M |
| 3300005586 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 | Environmental | Open in IMG/M |
| 3300005598 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 | Environmental | Open in IMG/M |
| 3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
| 3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
| 3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
| 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006795 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B | Environmental | Open in IMG/M |
| 3300006796 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 | Environmental | Open in IMG/M |
| 3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009523 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG | Environmental | Open in IMG/M |
| 3300009524 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG | Environmental | Open in IMG/M |
| 3300009698 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG | Environmental | Open in IMG/M |
| 3300009700 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG | Environmental | Open in IMG/M |
| 3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010880 | Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012198 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
| 3300014495 | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014502 | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014657 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300025474 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025500 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025878 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes) | Environmental | Open in IMG/M |
| 3300026273 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes) | Environmental | Open in IMG/M |
| 3300026310 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026527 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes) | Environmental | Open in IMG/M |
| 3300026552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) | Environmental | Open in IMG/M |
| 3300026760 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-B (SPAdes) | Environmental | Open in IMG/M |
| 3300027117 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027574 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027641 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027678 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027692 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027698 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027854 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) | Environmental | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028762 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3 | Environmental | Open in IMG/M |
| 3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
| 3300028789 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3 | Environmental | Open in IMG/M |
| 3300028877 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3 | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300029997 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3 | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030617 | II_Palsa_N2 coassembly | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
| 3300031736 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031792 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 | Environmental | Open in IMG/M |
| 3300031793 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 | Environmental | Open in IMG/M |
| 3300031795 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19 | Environmental | Open in IMG/M |
| 3300031796 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24 | Environmental | Open in IMG/M |
| 3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032009 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 | Environmental | Open in IMG/M |
| 3300032025 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 | Environmental | Open in IMG/M |
| 3300032042 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20207J14881_10150201 | 3300001398 | Arctic Peat Soil | PSFDANPGASASIGVAQWQAPMTIDDLLEACDAALLRSKRQGKGRVTRAS* |
| JGI26340J50214_101876982 | 3300003368 | Bog Forest Soil | EVGPGVSASVGVAQWQSPMGTDALLEACDAALLRSKRQGKGRVTRSASLG* |
| Ga0062385_104731372 | 3300004080 | Bog Forest Soil | LFPDADADRGLSASIGVAQWRAPMSTDALLRACDSALLRSKREGKGRVSRASDPIR* |
| Ga0062384_1013339821 | 3300004082 | Bog Forest Soil | ASIGVAQWQSPMATDQLLEACDLALLRSKRQGKGRVTSASHSIS* |
| Ga0062386_1013398471 | 3300004152 | Bog Forest Soil | IAADDGVGPGVSASIGVAQWQPSMSTDELLEACDAALLRAKREGKGRVTRAGSPR* |
| Ga0062388_1009836211 | 3300004635 | Bog Forest Soil | GVSASIGVAQWQSPMATDQLLEACDLALLRSKRQGKGRVTSASHSIS* |
| Ga0066688_106696412 | 3300005178 | Soil | IGVAEWHAPMNTDELIKACDAALLRSKREGKGRISRAAEPVR* |
| Ga0070709_113659741 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | PPGDDPPISASIGVAQWRPPMTTDELLEACDVALLRAKREGKGRVTRASEPVL* |
| Ga0066704_108686462 | 3300005557 | Soil | ASIGVAEWHAPMSTDDLLRACDAALMRSKREGKGRVSRAAGPPA* |
| Ga0066708_107858241 | 3300005576 | Soil | APSLGDEQGVPASIGVAEWHAPMTTDDLLRACDAALLRSKREGKGRVSRAAGPLA* |
| Ga0066691_107284232 | 3300005586 | Soil | DAGISASIGVAEWRAPMSTDELIEACDAALLRSKREGKGRVTRAGEPVY* |
| Ga0066706_110675572 | 3300005598 | Soil | LDDEQGVPASIGVAEWHAPMTTDDLLRACDAALLRSKREGKGRVSRAAGPLA* |
| Ga0075028_1008020951 | 3300006050 | Watersheds | PTPGATDHGVSASIGAAQWREGMGTDELLEACDRALMRSKRQGKGRVTSAAEPLV* |
| Ga0075026_1001872782 | 3300006057 | Watersheds | IGVAAWRAPMGVDELLVAADAALLRSKRQGKGRVTRAADAAR* |
| Ga0075015_1006735621 | 3300006102 | Watersheds | VAASIGAAQWHSPMTIDELLEACDAALLRSKREGKGRVTRAR* |
| Ga0070715_104681352 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | SASIGVAQWHAPMSTDDLLQACDVALLRSKREGKGRVTRAAEPIA* |
| Ga0070716_1002742102 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | SIGVAEWHAPMSTDDLLRACDEALLRSKREGKGRVSRASGAPA* |
| Ga0070716_1005657352 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | WHAPMSTDDLLEACDVALLRSKREGKGRVTRAAEPIA* |
| Ga0075520_12040151 | 3300006795 | Arctic Peat Soil | GAGVSASIGVAQWQDPMSTDDLLEACDSALLRSKRQGKGRVTRAPDPVL* |
| Ga0066665_106875181 | 3300006796 | Soil | PATGRDGISASIGVAEWRAPMSTDELIEACDVALLRSKREGKGRVTRAAEPVY* |
| Ga0066660_116046752 | 3300006800 | Soil | PMNTDELIKACDAALLRSKRDGKGRISRAAEPVR* |
| Ga0066709_1033845352 | 3300009137 | Grasslands Soil | SLGVAGWHPPMNTDDLIKACDAALLRSKREGKGRVSRAAEPVR* |
| Ga0116221_12145642 | 3300009523 | Peatlands Soil | GVAQWHAPMSTDDLLEACDLALLRSKREGKGRVVRASEHVR* |
| Ga0116225_13934021 | 3300009524 | Peatlands Soil | GVAQWQSPMSTDALLEACDAALLRAKRQGKGRVTRATELVS* |
| Ga0116216_104583831 | 3300009698 | Peatlands Soil | TGPSGVSASIGAGQWRAPMSTDQLLEACDAALLRSKRQGKGRVTRAPESAR* |
| Ga0116217_103434562 | 3300009700 | Peatlands Soil | GSGVSASIGVAQWQEPMTTDELLGACDVALLRSKREGKGRVTGAARAIG* |
| Ga0074046_107057342 | 3300010339 | Bog Forest Soil | SSIGAGVSASIGVAQWQPQMTTDELLEACDVALLRSKRQGKGRVTGAERAIG* |
| Ga0134126_130825641 | 3300010396 | Terrestrial Soil | QWHAPMGTDELLEACDLALLRSKREGKGRVTRAAEPIA* |
| Ga0126350_105801801 | 3300010880 | Boreal Forest Soil | APMGTDELLEACDAALLRSKRQGKQRVTRASELAR* |
| Ga0126350_117668352 | 3300010880 | Boreal Forest Soil | WHAPMGTDELLEACDLALLRSKREGKGRVTRASEPVS* |
| Ga0137364_104596421 | 3300012198 | Vadose Zone Soil | LGDQPGVSASIGVAEWTAPMTTDELIEACDTALLRSKRDGKRRVTRAAEPV* |
| Ga0137379_113712061 | 3300012209 | Vadose Zone Soil | IGVAQWQSPMTTDELLNACDAALLRAKRQGKGRVTRASGPAG* |
| Ga0164309_111938222 | 3300012984 | Soil | AGEGGISASIGVAQWHAPMSTDDLLQACDVALLRSKREGKGRVTRAAEPIA* |
| Ga0157372_124498592 | 3300013307 | Corn Rhizosphere | HAPMSTDDLLKACDVALLRSKREGKGRVTRAAEPIA* |
| Ga0181537_111390752 | 3300014201 | Bog | GVAQWQAPMSTDELLEACDAALLRAKRQGKGRVTSASTGAW* |
| Ga0182016_107388412 | 3300014493 | Bog | ASYEGGPGISASIGVAQWQPRMSTDELLEACDSALRRSKREGKGRVTAAPEPLV* |
| Ga0182015_103677832 | 3300014495 | Palsa | AIPTPDGAGVSASIGVSQWQAPMGTDELLEACDIALLRSKRQGKGRVTRASASAP* |
| Ga0182024_118577881 | 3300014501 | Permafrost | GALPSLDAASGVSASIGVAQWQSPMTTDQLLEACDLALLRSKRQGKGRVTSASHSIT* |
| Ga0182021_128278162 | 3300014502 | Fen | SASVGVAEWQEGMSTDDLLNACDSALLRAKRQGKGRVTRAIEPTR* |
| Ga0181522_106591922 | 3300014657 | Bog | IGVAAWRSPMGVDELLVAADVALLRSKRQGKGRVTQAPDGVF* |
| Ga0182035_113419952 | 3300016341 | Soil | ALEPIGDDSPLSASIGVAQWRAPMSTDELLEACDVALLRSKREGKGRVSRASEPVL |
| Ga0182037_112400882 | 3300016404 | Soil | IGVAQWRAPMTTDELLEACDVALLRSKREGKGRVSRASEPVP |
| Ga0187781_103388562 | 3300017972 | Tropical Peatland | TVPFPDAGEGLSASVGVAQWHPPMSSDALLHACDEALLRSTRQGKGRVSRASEPVR |
| Ga0187804_102536041 | 3300018006 | Freshwater Sediment | VSASIGAAQWRSPMSIDELLEACDAALLRSKRQGKGRVTGARQPPR |
| Ga0066667_112657651 | 3300018433 | Grasslands Soil | GVAEWHAPMSTDDLIEACDAALLRSKREGKGRVTRAAEPAY |
| Ga0066662_108017542 | 3300018468 | Grasslands Soil | VSASIGVAEWQSPMGTDELLEACDAALLRSKRQGKGRVTSAAERA |
| Ga0066662_114178372 | 3300018468 | Grasslands Soil | APMSTDELIEACDVALLRSKREGKGRVTRAAEPVY |
| Ga0206354_108532891 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | IGVAQWRAPMGVDELLEACDQALLRSKREGKGRVTRASEPVA |
| Ga0210395_107964651 | 3300020582 | Soil | ASIGVAQWQPPMSTDELLEACDTALLRSKRQGKRRVTRASEPVR |
| Ga0210400_102340021 | 3300021170 | Soil | RTPGVSASIGVAQWQAPMSIDELLEACDAALLRSKRQGKGRVTRASAPAAH |
| Ga0210386_109630462 | 3300021406 | Soil | AQNGIGAGGVSASIGAAQWRAPMNTDELLEACDAALLRSKRQGKGRVTRAPAAPA |
| Ga0208479_10789252 | 3300025474 | Arctic Peat Soil | ARPGSIGEGQARRGISASIGVAQWQAPMNTDELLEACDAALLRSKRQGKGRVTRASEHVR |
| Ga0208686_10086081 | 3300025500 | Peatland | VSASIGAAQWRAPMSTDELLEACDVALLRSKRQGKGRVTRASASSP |
| Ga0209584_101059462 | 3300025878 | Arctic Peat Soil | PSAETGISASIGVAQWHAPMGTDELLEACDLALLRSKREGKGRVTRASELVV |
| Ga0209881_11196921 | 3300026273 | Soil | SYIDDASTGVSASIGAAQWQAPMRTDALLEASDLALMESKRHGKGRVTRASERI |
| Ga0209239_11290091 | 3300026310 | Grasslands Soil | GVSASIGVAEWSAPMTTDELIEACDRALLRSKREGKRRVTRAAEPV |
| Ga0209059_12801052 | 3300026527 | Soil | GHESGQGVPASIGVAQWRSPMTTDDLLMACDTALLRAKREGKDRVTRAAEPA |
| Ga0209577_103196101 | 3300026552 | Soil | WRSPMTVDDLLMACDAALLRSKREGKGRVTHAAGSA |
| Ga0209577_108482312 | 3300026552 | Soil | LPSLDGERGVPASIGVAEWHAPMNTDELIKACDAALLRSKREGKGRVSRAAEPVR |
| Ga0207630_1073552 | 3300026760 | Soil | LGIAQGGVSASIGVAQWTESMSTDALLAACDAALLRSKRQGKGRVTQASASAS |
| Ga0209732_10416571 | 3300027117 | Forest Soil | PPMSTDDLLAACDSALLRSKRQGKGRVTRSGESSR |
| Ga0208982_11210231 | 3300027574 | Forest Soil | GVSASIGVAQWQPPMSTDDLLAACDAGLLRSKRQGKGRVTRSSDPVR |
| Ga0208827_11147071 | 3300027641 | Peatlands Soil | GVAQWHAPMSTDDLLEACDLALLRSKREGKGRVVRASEHVR |
| Ga0209011_11617222 | 3300027678 | Forest Soil | RSFDADAGVSASIGVAQWHAPMTTDELIEACDVALLRAKRQGKGRVTKAVEPIP |
| Ga0209530_11177782 | 3300027692 | Forest Soil | SASIGVAQWQAPMATDQLLAACDFALLRSKRQGKGRVTSASHSIS |
| Ga0209446_10656281 | 3300027698 | Bog Forest Soil | VSEGVSASIGVAQWNAPMSTDDLLEACDAALLRSKRQGKGRVTRAT |
| Ga0209446_11981131 | 3300027698 | Bog Forest Soil | FPDADADRGLSASIGVAQWRAPMSTDALLRACDSALLRSKREGKGRVSRASDPIR |
| Ga0209517_101672031 | 3300027854 | Peatlands Soil | QQGVSASIGVAQWEAPMGTDELLAACDEALLRSKRQGKGRVTRASALIR |
| Ga0209526_103328651 | 3300028047 | Forest Soil | QGTGISASIGVAEWHPPMSTDELIEACDEALLRSKRDGKGRVSKASEPLEQP |
| Ga0302202_103544302 | 3300028762 | Bog | ASIGVAQWQPRMSTDELLEACDAALRRSKREGKGRVTAAPEPLV |
| Ga0302231_104314392 | 3300028775 | Palsa | PMTIDELLQACDAALLRSKRQGKGRVTRAPTPAPN |
| Ga0302232_106856842 | 3300028789 | Palsa | LDAGSGVSASIGVAQWQASMTTDQLLEACDVALMRSKRQGKGRVTSASHATF |
| Ga0302235_101345811 | 3300028877 | Palsa | SGVSASIGVAQWQASMTTDQLLEACDVALMRSKRQGKGRVTSASHATF |
| Ga0311371_125780322 | 3300029951 | Palsa | HDGDGGGVSASIGVSQWQAPMSTDELLEACDAALLRSKRQGKGRVIRAPELAR |
| Ga0302302_12797061 | 3300029997 | Palsa | VAQWQAPMTIDELLQACDAALLRSKRQGKGRVTRAPTPAPN |
| Ga0311338_101936291 | 3300030007 | Palsa | SFDETPGASASIGVAQWQAPMTIDELLAACDAALLRSKRQGKRRVTRAAAN |
| Ga0311338_105303882 | 3300030007 | Palsa | AQTGVAAGVSASIGVGQWHAPMSTDQLLEACDAALLRSKRQGKGRVTRAS |
| Ga0311338_105844302 | 3300030007 | Palsa | ALPSLQDEGGIAASIGVAQWRAPMTTDELLAACDVALLRSKRQGKGRVTAASPAVR |
| Ga0311357_115122652 | 3300030524 | Palsa | ALPSLDASSGVSASIGVAQWQSPMATDQLLEACDLALLRSKRQGKGRVTSASHSVS |
| Ga0311356_107234132 | 3300030617 | Palsa | QWQPPMSTDELLAACDVALLRSKRQGKGRVTGASRARS |
| Ga0311354_115523972 | 3300030618 | Palsa | DANPGASASIGVAQWQAPMSVDALLEACDAALLRSKRQGKGRVTRASVAPH |
| Ga0302325_111665752 | 3300031234 | Palsa | DGGGVSASIGVSQWQAPMSTDELLEACDAALLRSKRQGKGRVIRAPELAR |
| Ga0302325_126146682 | 3300031234 | Palsa | ASIGTAQWRSPMGIDELLEACDLALLRSKRQGKGRVTRASSPPSR |
| Ga0302324_1003919962 | 3300031236 | Palsa | IGVSQWQAPMSTDELLEACDAALLRSKRQGKGRVTRAPEPAR |
| Ga0302324_1029604751 | 3300031236 | Palsa | GVAQWQASMTTDQLLEACDVALMRSKRQGKGRVTSASHATF |
| Ga0302326_110643542 | 3300031525 | Palsa | SDEELAHGVSASIGVAQWRAPMGTDELLEACDAALLRSKRQGKGRVIRAPELPAS |
| Ga0318534_100872651 | 3300031544 | Soil | ARGISASIGVAEWHPPMGTDELIEACDAALLRSKREGKGRVTRAAEPVY |
| Ga0318534_105761352 | 3300031544 | Soil | DPPLSASIGVAQWRAPMTTDELLEACDVALLRSKREGKGRVSRASEPVP |
| Ga0318555_105028291 | 3300031640 | Soil | IDDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKREGKGRVSRASEPVP |
| Ga0318574_103531661 | 3300031680 | Soil | LSASIGVAQWRAPMTTDELLEACDVALLRSKREGKGRVSRASEPVP |
| Ga0318501_101665572 | 3300031736 | Soil | IDDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0306918_101198351 | 3300031744 | Soil | LALETIDDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318546_107832691 | 3300031771 | Soil | DPPLSASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318529_104982091 | 3300031792 | Soil | PIDDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318548_101947891 | 3300031793 | Soil | GVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318557_105094561 | 3300031795 | Soil | RAPMSTDELLEACDVALLRSKREGKGRVSRASEPVL |
| Ga0318576_105978912 | 3300031796 | Soil | TIHDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKREGKGRVSRASEPVP |
| Ga0318523_103548041 | 3300031798 | Soil | SASIGVAEWHPPMGTDELIEACDAALLRSKREGKGRVTRAAEPVY |
| Ga0310917_106426441 | 3300031833 | Soil | ALETIDDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318495_100801452 | 3300031860 | Soil | AQWRAPMSTDELLEACDVALLRSKREGKGRVSRASEPVL |
| Ga0318536_105525011 | 3300031893 | Soil | PPLSASIGVAQWRAQMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318551_104980541 | 3300031896 | Soil | IGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0310910_115065201 | 3300031946 | Soil | GAAATGISASIGVAEWHAPMTTDELIEACDVALLRSKREGKGRVTRAAEPIY |
| Ga0307479_104612441 | 3300031962 | Hardwood Forest Soil | WHPPMTTDDLIRACDAALLRAKREGKGRVTRAAEPAY |
| Ga0307479_117314721 | 3300031962 | Hardwood Forest Soil | RTPMTTDELLMAADAALLRAKREGKGRVTRAADSV |
| Ga0318563_101382282 | 3300032009 | Soil | ASIGVAEWHPPMGTDELIEACDAALLRSKREGKGRVTRAAEPVY |
| Ga0318507_102451581 | 3300032025 | Soil | SASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318545_102173781 | 3300032042 | Soil | ALETIHDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKRQGKGRVSRASEPVP |
| Ga0318514_103491982 | 3300032066 | Soil | DPPMGTDELIEACDAALLRSKREGKGRVTRAAEPVY |
| Ga0318577_106510131 | 3300032091 | Soil | ALEPIDDDPPLSASIGVAQWRAPMTTDELLEACDVALLRSKREGKGRVSRASEPVP |
| Ga0307470_102005431 | 3300032174 | Hardwood Forest Soil | ASMGVAEWREPMSAEELLRACDAALLRGKRERKGTVTRAGV |
| Ga0335078_102745472 | 3300032805 | Soil | IGVGQWHAPMGTDQLLEACDAALLRSKREGKGRVTRSS |
| Ga0335070_113210831 | 3300032829 | Soil | AHGVSASIGVAAWRAPMGIDELVAAADAALLRAKRQGKGRVTQAPDPVF |
| Ga0335070_114182281 | 3300032829 | Soil | DGMAHGVSASVGVAAWRAPMGVDELLVAADAALLRSKRQGKGRVTAAR |
| Ga0335074_113119782 | 3300032895 | Soil | LALPVRETEPGVGASIGAAQWQAPMDTDALLGACDAALLRSKRQGKGRVTRASVS |
| Ga0335072_105690762 | 3300032898 | Soil | QPPMGTDELLAACDAALLRSKRQGKGRVTRAADSHR |
| Ga0335073_108022022 | 3300033134 | Soil | DGVAREHGLSASVGVAQWRAPMSTDQLLEACDAALLRSKRQGKGRVTRTPAHAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |