Metagenome Family F077861

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077861
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	40 residues
Representative Sequence	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLV
Number of Associated Samples	102
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	44.44 %
% of genes near scaffold ends (potentially truncated)	99.15 %
% of genes from short scaffolds (< 2000 bps)	87.18 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.427 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.094 % of family members)
Environment Ontology (ENVO)	Unclassified (24.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.120 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.34% β-sheet: 0.00% Coil/Unstructured: 43.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF05221	AdoHcyase	2.56
PF07228	SpoIIE	1.71
PF02371	Transposase_20	1.71
PF13714	PEP_mutase	1.71
PF04235	DUF418	1.71
PF00670	AdoHcyase_NAD	1.71
PF00106	adh_short	0.85
PF00891	Methyltransf_2	0.85
PF03743	TrbI	0.85
PF13564	DoxX_2	0.85
PF01329	Pterin_4a	0.85
PF03551	PadR	0.85
PF13376	OmdA	0.85
PF13578	Methyltransf_24	0.85
PF13483	Lactamase_B_3	0.85
PF00903	Glyoxalase	0.85
PF14659	Phage_int_SAM_3	0.85
PF13302	Acetyltransf_3	0.85
PF02592	Vut_1	0.85
PF00436	SSB	0.85
PF03965	Penicillinase_R	0.85
PF00691	OmpA	0.85
PF12704	MacB_PCD	0.85
PF02687	FtsX	0.85
PF03938	OmpH	0.85
PF16694	Cytochrome_P460	0.85
PF07366	SnoaL	0.85
PF13407	Peripla_BP_4	0.85
PF07394	DUF1501	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	4.27
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.71
COG2311	Uncharacterized membrane protein YeiB	Function unknown [S]	1.71
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.71
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.85
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.85
COG1738	Queuosine precursor transporter YhhQ, DUF165 family	Translation, ribosomal structure and biogenesis [J]	0.85
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.85
COG2825	Periplasmic chaperone for outer membrane proteins, Skp family	Cell wall/membrane/envelope biogenesis [M]	0.85
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.85
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.43 %
Unclassified	root	N/A	49.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.43 %
Unclassified	root	N/A	49.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.43 %
Unclassified	root	N/A	49.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.55 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	1.71 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.71 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	1.71 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.71 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.85 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.85 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.85 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.71 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.85 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.85 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.85 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.85 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.71 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.85 %
Pyxidicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	0.85 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.85 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.85 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.71 %
Pyxidicoccus caerfyrddinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus → Pyxidicoccus caerfyrddinensis	0.85 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.85 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.85 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.85 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.85 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10083298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1503	Open in IMG/M
3300005187\|Ga0066675_10940213	Not Available	652	Open in IMG/M
3300005332\|Ga0066388_106697235	Not Available	580	Open in IMG/M
3300005434\|Ga0070709_10361934	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300005446\|Ga0066686_10115938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1741	Open in IMG/M
3300005446\|Ga0066686_10279628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1131	Open in IMG/M
3300005530\|Ga0070679_100424506	Not Available	1275	Open in IMG/M
3300005537\|Ga0070730_10328248	Not Available	998	Open in IMG/M
3300005552\|Ga0066701_10355452	Not Available	907	Open in IMG/M
3300005561\|Ga0066699_10968830	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	590	Open in IMG/M
3300005614\|Ga0068856_100195123	All Organisms → cellular organisms → Bacteria → Acidobacteria	2039	Open in IMG/M
3300005616\|Ga0068852_101167942	Not Available	791	Open in IMG/M
3300005764\|Ga0066903_106339704	Not Available	617	Open in IMG/M
3300005841\|Ga0068863_100793136	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	944	Open in IMG/M
3300005921\|Ga0070766_10960964	Not Available	586	Open in IMG/M
3300006163\|Ga0070715_10227415	Not Available	963	Open in IMG/M
3300006800\|Ga0066660_10476415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1047	Open in IMG/M
3300006854\|Ga0075425_102445873	Not Available	579	Open in IMG/M
3300006954\|Ga0079219_10326863	Not Available	968	Open in IMG/M
3300007788\|Ga0099795_10070140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	1320	Open in IMG/M
3300007788\|Ga0099795_10108571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1097	Open in IMG/M
3300009520\|Ga0116214_1144313	Not Available	885	Open in IMG/M
3300009792\|Ga0126374_11789199	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010043\|Ga0126380_11878720	Not Available	544	Open in IMG/M
3300010046\|Ga0126384_10764941	Not Available	862	Open in IMG/M
3300010048\|Ga0126373_12733254	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300010048\|Ga0126373_13022426	Not Available	524	Open in IMG/M
3300010159\|Ga0099796_10138842	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300010343\|Ga0074044_10594420	Not Available	722	Open in IMG/M
3300010359\|Ga0126376_12119636	Not Available	606	Open in IMG/M
3300010360\|Ga0126372_13006479	Not Available	523	Open in IMG/M
3300010361\|Ga0126378_13048096	Not Available	534	Open in IMG/M
3300010366\|Ga0126379_11066695	All Organisms → cellular organisms → Bacteria → Terrabacteria group	913	Open in IMG/M
3300010371\|Ga0134125_10242174	Not Available	2005	Open in IMG/M
3300010373\|Ga0134128_11763538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	681	Open in IMG/M
3300010375\|Ga0105239_10457603	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300010376\|Ga0126381_100302681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2190	Open in IMG/M
3300010376\|Ga0126381_103910608	Not Available	581	Open in IMG/M
3300010397\|Ga0134124_10498559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300010399\|Ga0134127_13567557	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	510	Open in IMG/M
3300012205\|Ga0137362_11747904	Not Available	509	Open in IMG/M
3300012357\|Ga0137384_10343420	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300012363\|Ga0137390_10646392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300012923\|Ga0137359_10487586	Not Available	1088	Open in IMG/M
3300012923\|Ga0137359_10941639	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300012929\|Ga0137404_11718826	Not Available	583	Open in IMG/M
3300012960\|Ga0164301_10626437	Not Available	798	Open in IMG/M
3300012971\|Ga0126369_12801894	Not Available	571	Open in IMG/M
3300013105\|Ga0157369_10302497	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1663	Open in IMG/M
3300015356\|Ga0134073_10349316	Not Available	543	Open in IMG/M
3300016319\|Ga0182033_10104759	All Organisms → cellular organisms → Bacteria	2089	Open in IMG/M
3300016341\|Ga0182035_10209495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1547	Open in IMG/M
3300016445\|Ga0182038_11730607	Not Available	564	Open in IMG/M
3300017927\|Ga0187824_10175384	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus → Pyxidicoccus caerfyrddinensis	720	Open in IMG/M
3300017943\|Ga0187819_10490054	Not Available	701	Open in IMG/M
3300018044\|Ga0187890_10671028	Not Available	585	Open in IMG/M
3300018057\|Ga0187858_10436074	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300018086\|Ga0187769_11294661	Not Available	551	Open in IMG/M
3300018088\|Ga0187771_11849643	Not Available	513	Open in IMG/M
3300018090\|Ga0187770_11640689	Not Available	525	Open in IMG/M
3300020582\|Ga0210395_10509384	Not Available	905	Open in IMG/M
3300021046\|Ga0215015_10391791	Not Available	591	Open in IMG/M
3300021168\|Ga0210406_10040212	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4155	Open in IMG/M
3300021168\|Ga0210406_11253579	Not Available	536	Open in IMG/M
3300021403\|Ga0210397_11362298	Not Available	551	Open in IMG/M
3300021420\|Ga0210394_10024921	All Organisms → cellular organisms → Bacteria → Acidobacteria	5455	Open in IMG/M
3300021433\|Ga0210391_10010100	All Organisms → cellular organisms → Bacteria	7663	Open in IMG/M
3300021433\|Ga0210391_10918770	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	682	Open in IMG/M
3300021479\|Ga0210410_10014950	All Organisms → cellular organisms → Bacteria	6692	Open in IMG/M
3300021560\|Ga0126371_10220885	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300022557\|Ga0212123_10498948	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300025463\|Ga0208193_1033532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1240	Open in IMG/M
3300025928\|Ga0207700_10351875	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300025928\|Ga0207700_10395208	Not Available	1211	Open in IMG/M
3300026845\|Ga0207760_104859	Not Available	1165	Open in IMG/M
3300027371\|Ga0209418_1038471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300027641\|Ga0208827_1199820	Not Available	532	Open in IMG/M
3300028746\|Ga0302233_10104454	Not Available	1115	Open in IMG/M
3300028746\|Ga0302233_10305901	Not Available	601	Open in IMG/M
3300028759\|Ga0302224_10383270	Not Available	570	Open in IMG/M
3300028877\|Ga0302235_10414697	Not Available	576	Open in IMG/M
3300028906\|Ga0308309_11248395	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	640	Open in IMG/M
3300029910\|Ga0311369_10144900	All Organisms → cellular organisms → Bacteria → Acidobacteria	2300	Open in IMG/M
3300029910\|Ga0311369_10902429	Not Available	705	Open in IMG/M
3300029918\|Ga0302143_1140528	Not Available	577	Open in IMG/M
3300029943\|Ga0311340_11451111	Not Available	539	Open in IMG/M
3300029944\|Ga0311352_10105395	All Organisms → cellular organisms → Bacteria → Acidobacteria	2479	Open in IMG/M
3300030043\|Ga0302306_10383346	Not Available	537	Open in IMG/M
3300030399\|Ga0311353_10920946	Not Available	737	Open in IMG/M
3300030580\|Ga0311355_11043138	Not Available	732	Open in IMG/M
3300030739\|Ga0302311_10226947	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300031057\|Ga0170834_112582898	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	512	Open in IMG/M
3300031234\|Ga0302325_10151893	All Organisms → cellular organisms → Bacteria	4139	Open in IMG/M
3300031236\|Ga0302324_102178257	Not Available	688	Open in IMG/M
3300031236\|Ga0302324_102693398	Not Available	601	Open in IMG/M
3300031524\|Ga0302320_11084037	Not Available	837	Open in IMG/M
3300031640\|Ga0318555_10608605	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300031682\|Ga0318560_10307519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300031708\|Ga0310686_101529484	All Organisms → cellular organisms → Bacteria	7945	Open in IMG/M
3300031718\|Ga0307474_10079954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	2431	Open in IMG/M
3300031718\|Ga0307474_10089576	All Organisms → cellular organisms → Bacteria → Proteobacteria	2295	Open in IMG/M
3300031768\|Ga0318509_10028705	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300031768\|Ga0318509_10404915	Not Available	763	Open in IMG/M
3300031777\|Ga0318543_10104128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1221	Open in IMG/M
3300031782\|Ga0318552_10273638	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300031792\|Ga0318529_10083334	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300031880\|Ga0318544_10343341	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031896\|Ga0318551_10902280	Not Available	516	Open in IMG/M
3300031942\|Ga0310916_10964988	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300031946\|Ga0310910_10401142	Not Available	1086	Open in IMG/M
3300031954\|Ga0306926_12234905	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031954\|Ga0306926_13023706	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300032055\|Ga0318575_10550503	Not Available	585	Open in IMG/M
3300032076\|Ga0306924_10761812	Not Available	1082	Open in IMG/M
3300032160\|Ga0311301_12425720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300032261\|Ga0306920_103135551	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300032261\|Ga0306920_104239672	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.87%
Host-Associated	Host-Associated	5.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.74%
Aquatic	Environmental → Aquatic	5.13%
Plants	Host-Associated → Plants	5.13%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.21%
Peat	Environmental → Terrestrial → Peat	14.53%
Freshwater	Environmental → Aquatic → Freshwater	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.56%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.53%
Loam	Environmental → Terrestrial → Soil → Loam	10.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.56%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.09%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.13%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.56%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.71%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029918	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_100832981	3300004633	Tropical Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMQLLADLVERCQHR
Ga0066675_109402131	3300005187	Soil	MLALPMTLNTTAETEAARIARGLRERDMELLADLVERYQHRLV
Ga0066388_1066972351	3300005332	Tropical Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMQLLADLVERCQHRLV
Ga0070709_103619341	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTLNTTAETETAKIARGLRERDMELLADLVERCQHRLVRYL
Ga0066686_101159382	3300005446	Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLV
Ga0066686_102796282	3300005446	Soil	MSAFPMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLV
Ga0070679_1004245062	3300005530	Corn Rhizosphere	MSALPMTLNTTAETETARIARGLREKDMQLVADLVERCQHR
Ga0070730_103282483	3300005537	Surface Soil	MTLNTTAETETAKIARGLRERDMELLADLVERCQH
Ga0066701_103554522	3300005552	Soil	MTLNTTAETETAKIARGLRERDMELLADLVERCQHRLV
Ga0066699_109688301	3300005561	Soil	MLALPMTLNTTAETETARIARGLRERDMELLADLVERCQHR
Ga0068856_1001951234	3300005614	Corn Rhizosphere	MTLNTTAESETAKIARGLGEKDMELLSDLVERCQQRLVRYLL
Ga0068852_1011679423	3300005616	Corn Rhizosphere	MSALPMTLNMTAETETAKIARGLRERDMELLADLVE
Ga0066903_1063397041	3300005764	Tropical Forest Soil	MTLNTTAETETAKIARGLRERDMQLLADLVERCQHRLV
Ga0068863_1007931362	3300005841	Switchgrass Rhizosphere	MSALPMTLNITAESETAKIARGLRESDTELLADLVERSQRRLV
Ga0070766_109609641	3300005921	Soil	MSALAMTLNTTAETETAKIARGLRERDMELLADLV
Ga0070715_102274151	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTLNTTAETETAKIARGLRVRDMELLADLVERCQHRLVRYLLY
Ga0066660_104764153	3300006800	Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERYQH
Ga0075425_1024458731	3300006854	Populus Rhizosphere	MTLNITAETETAKIPRGLRESDTELLADLVERCQH
Ga0079219_103268632	3300006954	Agricultural Soil	MTLNTTAEAETAKIARGLREKDMELLADLVERYQH
Ga0099795_100701401	3300007788	Vadose Zone Soil	MLALPMTLNTTAETETAKIARGLRERDMELLADLVERYQHRL
Ga0099795_101085711	3300007788	Vadose Zone Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERYQHRL
Ga0116214_11443132	3300009520	Peatlands Soil	MLALPMTLNTTAETETAKIARGLRERVSELFADLLERIRNRRVGYR
Ga0126374_117891991	3300009792	Tropical Forest Soil	MWALPMTLNTTVETETAKIARGLRERDMELLADLVERCQHRLV
Ga0126380_118787201	3300010043	Tropical Forest Soil	MTLNMTAETETAKIARGLRERDMQLLADLVERCQHRLVRY
Ga0126384_107649411	3300010046	Tropical Forest Soil	MLALPITLNTTAETETAKIARGLRERDMELLADLVERCQHRLVRYL
Ga0126373_127332541	3300010048	Tropical Forest Soil	MSALPMTWNTTAETETAKIARGLRERDMQLLADLVERCQHRLVRYLLY
Ga0126373_130224261	3300010048	Tropical Forest Soil	MLALPMTLNTTAETETAKIARGLRERDMELLADLVER
Ga0099796_101388423	3300010159	Vadose Zone Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERSQRR
Ga0074044_105944202	3300010343	Bog Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLVR
Ga0126376_121196361	3300010359	Tropical Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMQLLADLVERCQHRL
Ga0126372_130064791	3300010360	Tropical Forest Soil	MFGLPMTLNTTAETETAKIARGLRERDMELLAGLVERYQHRL
Ga0126378_130480962	3300010361	Tropical Forest Soil	MTFNTTAETETAKIARGLRERDMQLVADLVERCQHRLVRY
Ga0126379_110666951	3300010366	Tropical Forest Soil	MLALPITLNTTAEVETAKIARGLRERDMDLLADLVERY
Ga0134125_102421742	3300010371	Terrestrial Soil	MTLNITAETETAKIARGLRESDTELLADLVERCQHRLVRYLLYLIG
Ga0134128_117635383	3300010373	Terrestrial Soil	MLALPMSLHTAAETETAKIARGLRERDTALLADLVERYQQRLVR
Ga0105239_104576031	3300010375	Corn Rhizosphere	MTLNTTAEIETAKIARGLRDGDMELLADLVERSHRRLVR
Ga0126381_1003026811	3300010376	Tropical Forest Soil	MSALPMTLNTTAETETETAKIARGLRERDMQLLADLVERCQHRLVRY
Ga0126381_1039106081	3300010376	Tropical Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMQLLADLVERY
Ga0134124_104985591	3300010397	Terrestrial Soil	MTLNTTAETETAKIARGLREKDMELLADLVERSQRRLV
Ga0134127_135675572	3300010399	Terrestrial Soil	MLALPMSLNTAAETESAKIARGLRERDTALLADLVERY
Ga0137362_117479041	3300012205	Vadose Zone Soil	MTLNTTAETETAKIARGLRERDMELLADLVERSQRRLVRYLLYL
Ga0137384_103434202	3300012357	Vadose Zone Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERCQH
Ga0137390_106463922	3300012363	Vadose Zone Soil	MTLNTTAETETAKIARGLRERDMELLADLVERCQHRLVRYLL
Ga0137359_104875861	3300012923	Vadose Zone Soil	MTLNTTAETEAAKIARGLRERDMELFADLVGRCQHR
Ga0137359_109416392	3300012923	Vadose Zone Soil	MSALPMTLNTTAENETAKIARGLRERDVELLADLVERCHHRLVRYLL
Ga0137404_117188261	3300012929	Vadose Zone Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERYQHRLVR
Ga0164301_106264372	3300012960	Soil	MAALTITLNITAETETAKTARGLRESDTELLADLVERS
Ga0126369_128018942	3300012971	Tropical Forest Soil	MSALPMTLNTTAEAETAKIARGLRERDMQLLADLVERCQHR
Ga0157369_103024972	3300013105	Corn Rhizosphere	MTLNTTAEIETAKIARGLRERDPELLGELVEQCHRRLVRYLLYLTGRR
Ga0134073_103493161	3300015356	Grasslands Soil	MLALPMTLNTTAETETAKIARGLRERDTELLADLVERCQHRLV
Ga0182033_101047592	3300016319	Soil	MLALPMTVNTTAETETAKIARGLHERDMELLADLVE
Ga0182035_102094952	3300016341	Soil	MLALPMTVNTTAETETAKIARGLHERDMELLADLV
Ga0182038_117306071	3300016445	Soil	MSALPMTLNTMAETETAKIARGLRERDMQLLADLVERCQHR
Ga0187824_101753841	3300017927	Freshwater Sediment	MTLNTRAETETGKIARGLRERDTELLADLVGRFQHRLLRYLL
Ga0187819_104900542	3300017943	Freshwater Sediment	MTLNTTAETETAKIARGLRERDMELLADLVERCQHRL
Ga0187890_106710281	3300018044	Peatland	MTLNMTAETETAKIARGLRERDMELLADLVERCQHRLVR
Ga0187858_104360742	3300018057	Peatland	MTLNTTAETETAKIARGLREKDMELLADLVERCQHR
Ga0187769_112946611	3300018086	Tropical Peatland	MSALPMTLNTPAETETAKIARGLRERDRELLADLVERFQHRLVR
Ga0187771_118496431	3300018088	Tropical Peatland	MSALPMTLNTPAETETAKIARGLRERDMELLADLVERCQ
Ga0187770_116406891	3300018090	Tropical Peatland	MTWNTTAETETAKIARGLRERDMELLADLVERCQRRLVR
Ga0210395_105093841	3300020582	Soil	MLALPMTLNTTAETETETAKIARGLRERDMELLADLVERCQHRLVRYLLY
Ga0215015_103917912	3300021046	Soil	MSALPMTLNTTAETETAKIARGLRERDMGLLADLVDRFQHRLVRGDVTLIV
Ga0210406_100402121	3300021168	Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLVRY
Ga0210406_112535791	3300021168	Soil	MTLNTTAETETAKIARGLRERDMQLVADLVERCHDRLVRYLL
Ga0210397_113622981	3300021403	Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLV
Ga0210394_100249217	3300021420	Soil	MSALHMTLNTIAETETAKIARGLRERDMELFADLVE
Ga0210391_100101001	3300021433	Soil	MLALHMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLV
Ga0210391_109187701	3300021433	Soil	MTLNTAAETETAKIARGLRERDMELLADLVERCQHRLVRY
Ga0210410_100149506	3300021479	Soil	MSALPMTLNTTAETETAKIARGLRERDMELFADLVGRCQHRLVRYLLYLT
Ga0126371_102208853	3300021560	Tropical Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMQLLADLVERCQHRLVR
Ga0212123_104989481	3300022557	Iron-Sulfur Acid Spring	MTLNTTAETETAKIARGLRERDMELLADLVERCQHRLVRYLLPHREAGVC
Ga0208193_10335323	3300025463	Peatland	MTLHTTAETETAKIARGLRERDMELLADLVERCQQTG
Ga0207700_103518751	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTLNMTAETETAKIARGLRERDMELLADLVERCQQR
Ga0207700_103952081	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSALPMTLNTTAETETAKIARGLRERDLELLADLVER
Ga0207760_1048592	3300026845	Tropical Forest Soil	MSALAMTLNTTAETETAKIARGLRERDMQLLADLVE
Ga0209418_10384711	3300027371	Forest Soil	MLALPMTLNMTAEAETAKIARGLRERNRELLAELVDRFH
Ga0208827_11998201	3300027641	Peatlands Soil	MTLNTTAETETAKIARGLRERDMELLADLVERYQHRLVR
Ga0302233_101044542	3300028746	Palsa	MSALPMTLNTTAETETAKIARGLREKDMELLADLVERY
Ga0302233_103059012	3300028746	Palsa	MTLNTTAETETAKIARGLRERDMELLADLVERYQHR
Ga0302224_103832701	3300028759	Palsa	MTLITTAETETAKIARGFRERDMELLADLVKRYQHRLVRY
Ga0302235_104146971	3300028877	Palsa	MLAIHMTLNTTAETETAKIARGLRERDIELLTDLVQRCQ
Ga0308309_112483952	3300028906	Soil	MTLNTAAETETAKIARGLRERDMELLADLVERCQHRLVRYLL
Ga0311369_101449003	3300029910	Palsa	MTLTTTAETETAKIARGLRERDMELLADLVERCQHRLVRYLL
Ga0311369_109024291	3300029910	Palsa	MLALPMTLNTTAETETAKIARGLRERDIELLTDLVQRCQQ
Ga0302143_11405282	3300029918	Bog	MTLNTTAETETAKIARGLRERDIELLADLVERCQHRLVRYLLY
Ga0311340_114511111	3300029943	Palsa	MSALPMTLNMTAETETAKIARGLRERDRELLADLV
Ga0311352_101053955	3300029944	Palsa	MTLMTTAETETAKIARGLRERDIELLTELVDRYQHRLVRYVL
Ga0302306_103833461	3300030043	Palsa	MTLNTTAETETAKIARGLRERDMELLADLVQCCQQRLVRYLLYLTG
Ga0311353_109209461	3300030399	Palsa	MSALPMTLITTAETETAKIARGFRERDMELLADLVKRYQHRLVRY
Ga0311355_110431382	3300030580	Palsa	MTLNTTAETETAKIARGLRERDMQLLTELVDLFQHRLVRYL
Ga0302311_102269471	3300030739	Palsa	MTLNTTAESETAKIARGLRERDVELLADLVERSQHRLVRY
Ga0170834_1125828981	3300031057	Forest Soil	MTLNTTAETEAAKIARGLRERDMELLADLVERYQHRLV
Ga0302325_101518934	3300031234	Palsa	MTLNMTAETETAKIARGLRERDMELLADLVERCQHRLVRYL
Ga0302324_1021782571	3300031236	Palsa	MLALPMTLNTTAETETAKIARGLRERDIELLTDLVQR
Ga0302324_1026933981	3300031236	Palsa	MLALHMTLNTTAETETARIARGLRERDMELLADLVER
Ga0302320_110840371	3300031524	Bog	MSALPMTLITTAETEMAKIARGLRERDMELLADLVER
Ga0318555_106086051	3300031640	Soil	MTLNTMAETETAKIARGLRERDMQLLADLVERCQHRLVRYL
Ga0318560_103075191	3300031682	Soil	MTLNTTAESETAKIARGLRERDMELLADLVERCQHRLVR
Ga0310686_1015294846	3300031708	Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVER
Ga0307474_100799541	3300031718	Hardwood Forest Soil	MSALPMTLNTTAETETAKIARGLRERDMELLADLVERCQHR
Ga0307474_100895761	3300031718	Hardwood Forest Soil	MTLNTTAETETAKIARGLRERDMELLADLVERCQHR
Ga0318509_100287051	3300031768	Soil	MSVLPMTLNTMAETETAKIARGLRERDMQLLADLVERCQHRLVR
Ga0318509_104049151	3300031768	Soil	MTLNTTAETETAKIARGLRERDMQLLADLVERCQHRLVRY
Ga0318543_101041282	3300031777	Soil	MSALPMTLNTTAESETAKIARGLRERDMELLADLV
Ga0318552_102736381	3300031782	Soil	MTLNTTAETETAKIARGLRERDMQLLADLVERCQHRLVRYL
Ga0318529_100833341	3300031792	Soil	MTLNTMAETETAKIARGLRERDMQLLADLVERCQHRLVRYLL
Ga0318544_103433411	3300031880	Soil	MSALPMTFNTTAETETAKIARGLRERDMELLADLVERCQH
Ga0318551_109022801	3300031896	Soil	MTLNTTAETETAKIARGLRERDMQLLADLVERCQHRLVRYLL
Ga0310916_109649881	3300031942	Soil	MTLNTMAETETAKIARGLRERDMQLLADLVERCQHRLV
Ga0310910_104011421	3300031946	Soil	MSALPMTLNTMAETETAKIARGLRERDMQLLADLVERCQH
Ga0306926_122349052	3300031954	Soil	MSALAMTLNTTAETETAKIARGLRERDMELLADLVERCQH
Ga0306926_130237061	3300031954	Soil	MSALAMTLNTTAETETAKIARGLRERDMELLADLVERCQHRLV
Ga0318575_105505031	3300032055	Soil	MSALPMTLNTTAESETAKIARGLRERDMELLADLVERCQHRLV
Ga0306924_107618121	3300032076	Soil	MTWNTTAETETAKIARGLRERDMQLLADLVERCQHRLVRYLLYLI
Ga0311301_124257201	3300032160	Peatlands Soil	MTLNTTAETETAKIARGLRERNMELLADLVERCQHRLVRYLL
Ga0306920_1031355511	3300032261	Soil	MSALAMTLNTTAETETAKIARGLRERDMELLADLVER
Ga0306920_1042396721	3300032261	Soil	MTLNTTAETETAKIARGLRERDMELLADLVERCQHRLVRYLLY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077861

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences