Metagenome / Metatranscriptome Family F077867

Basic Information
Family ID	F077867
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	49 residues
Representative Sequence	FLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF
Number of Associated Samples	105
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.094 % of family members)
Environment Ontology (ENVO)	Unclassified (26.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.427 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00528	BPD_transp_1	32.48
PF01074	Glyco_hydro_38N	3.42
PF00580	UvrD-helicase	0.85
PF02355	SecD_SecF	0.85
PF06781	CrgA	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0383	Alpha-mannosidase	Carbohydrate transport and metabolism [G]	3.42
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.85
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.85
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.85

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.74%
Host-Associated	Host-Associated	10.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.34%
Plants	Host-Associated → Plants	10.26%
Aquatic	Environmental → Aquatic	9.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.98%
Sediment	Environmental → Aquatic → Sediment	5.13%
Freshwater	Environmental → Aquatic → Freshwater	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.27%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.09%
Loam	Environmental → Terrestrial → Soil → Loam	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.13%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.13%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.13%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.69%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	5.13%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.71%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1177247202	3300000956	Soil	HQVATAKVFRFDGSDQLPGAFGDTWGAALQDVIQKPTTTNIKKILSTFQGQIAGKFGS*
A1565W1_119678911	3300001536	Permafrost	AFGDTWGFALQDVIQKPGDIKNILSTFQKKIQGQF*
A10PFW1_113306222	3300001538	Permafrost	VRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIKGQF*
Ga0066677_102283071	3300005171	Soil	FDGSDQMPGAFGDTWGFALQDVIQHPGNISSILSKFQNQIKGQWGS*
Ga0070692_102361702	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	DLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF*
Ga0070673_1017248212	3300005364	Switchgrass Rhizosphere	LFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0070705_1000588073	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	SDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF*
Ga0066687_101495582	3300005454	Soil	DLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF*
Ga0068867_1009131681	3300005459	Miscanthus Rhizosphere	AEAHQLATAKTFVFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0070706_1005027292	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0070707_1021941871	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	PSVLARAEAHQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF*
Ga0070699_1001119274	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKNILSTFQSKIQGQF*
Ga0070699_1001725661	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKNILSTFQGKIQGQF*
Ga0066700_110191412	3300005559	Soil	PTVLTRKEGKQLSSAKIVRFDGSDQMPGAFGDTWGFALQDVIQHPGNISSILSKFQGQIKGQWGS*
Ga0066703_103498251	3300005568	Soil	RKEGKQLSSAKIVRFDGSDQMPGAFGDTWGFALQDVIQHPGNISSILSKFQGQIKGQWGS
Ga0066705_109524452	3300005569	Soil	AKTFLFDGSDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF*
Ga0066905_1002632383	3300005713	Tropical Forest Soil	DLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0070715_102035911	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	FVFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0074056_116037771	3300006574	Soil	KTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF*
Ga0074053_119905992	3300006575	Soil	PGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF*
Ga0066653_102932131	3300006791	Soil	TWGFALQSVIQNPSTANIKKILSGFQSKIQGQFGS*
Ga0066660_106848662	3300006800	Soil	LASAKIVRFDGSDQMPGAFGDTWGFALQNVIQHPNQIKSILSKFQNQIKGKWGS*
Ga0075434_1005975001	3300006871	Populus Rhizosphere	FGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0099793_106774632	3300007258	Vadose Zone Soil	LPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0066709_1016555762	3300009137	Grasslands Soil	DQLPGAIGDTWGDTLQNVIQKPGNVKSLMSDFQKKIAGQFG*
Ga0066709_1017546062	3300009137	Grasslands Soil	FDGSDQLPGAFGDTWGAALQNVIQKPSTSSVKKILSTFQGQIEGKFGS*
Ga0114129_126976761	3300009147	Populus Rhizosphere	AKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0105241_119208922	3300009174	Corn Rhizosphere	SPLVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0126309_112174661	3300010039	Serpentine Soil	DHLPGAFGDTGGDTLQNVVQKPGDAKSIMSDFQKKIAGQFG*
Ga0126384_107186771	3300010046	Tropical Forest Soil	GSDLLPGAFGDTWGFALQDVIQKPGNIKSILSDFQNKIKGQF*
Ga0134064_104202512	3300010325	Grasslands Soil	LPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF*
Ga0134062_106234242	3300010337	Grasslands Soil	LGRKEAAQLAAAKTFLFDGSDLLPGAFGDTWGFALQNVIQNPSTANIRKILAGFQSKIQGQFGS*
Ga0134062_107689181	3300010337	Grasslands Soil	VNQRASAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF*
Ga0126379_132080342	3300010366	Tropical Forest Soil	RAEAHQLATAKTFLFDGSDQLPGAFGDTWGFALQDVIQHPGNIKSILSDFQNKIKGQF*
Ga0134125_100517314	3300010371	Terrestrial Soil	AFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF*
Ga0134126_112389701	3300010396	Terrestrial Soil	LLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF*
Ga0134122_116898842	3300010400	Terrestrial Soil	GEAKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF*
Ga0134123_114672212	3300010403	Terrestrial Soil	FGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF*
Ga0120157_10171513	3300011994	Permafrost	AFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0137389_102565743	3300012096	Vadose Zone Soil	FLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0137389_115696112	3300012096	Vadose Zone Soil	LPGNFGDQWGAALQDVIQKPGNIKNILSTFQKKSEGQFG*
Ga0137364_101373643	3300012198	Vadose Zone Soil	LATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0137364_107347542	3300012198	Vadose Zone Soil	DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF*
Ga0137376_105871572	3300012208	Vadose Zone Soil	DLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0137378_101051324	3300012210	Vadose Zone Soil	FDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0137387_106026532	3300012349	Vadose Zone Soil	FGDTWGFALQDVIQHPSNIKSILSTFQNKIQGQF*
Ga0137366_105329861	3300012354	Vadose Zone Soil	NFGDQWGAALQEVIQKPGNIKSIMSTFQSKIQGQF*
Ga0134055_11565962	3300012401	Grasslands Soil	FGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF*
Ga0137373_102833133	3300012532	Vadose Zone Soil	QVKSAKVFRFDGSDQLPGAFGDTWGDTLQNVIQKPGDAKSIMSDFQKKIAGQFG*
Ga0137373_109293561	3300012532	Vadose Zone Soil	PSVLARGEAKQLAGAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF*
Ga0137397_101075783	3300012685	Vadose Zone Soil	SDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0157287_10299142	3300012885	Soil	GSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKITGQF*
Ga0157297_101611342	3300012914	Soil	AYPTKLVRAEVVQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIKGQF*
Ga0137359_106466971	3300012923	Vadose Zone Soil	LATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF*
Ga0137419_110633612	3300012925	Vadose Zone Soil	YPSPLVRAEVKQLASAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF*
Ga0126375_109097551	3300012948	Tropical Forest Soil	HQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSDFQNKIKGQF*
Ga0164299_104835202	3300012958	Soil	RAEAHQLATAKTFVFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF*
Ga0164302_107473912	3300012961	Soil	DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIKGQF*
Ga0134110_104160061	3300012975	Grasslands Soil	EVQQLASAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF*
Ga0164305_115522551	3300012989	Soil	DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQKKIQGQF*
Ga0157374_127934012	3300013296	Miscanthus Rhizosphere	SDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF*
Ga0120154_10176561	3300013501	Permafrost	FLFDGSDLLPGAFGDTWGFALQDVIQKPGDIKNILSTFQKKIQGQF*
Ga0120154_10864192	3300013501	Permafrost	AFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF*
Ga0120155_11789702	3300013768	Permafrost	QLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF*
Ga0134078_102910402	3300014157	Grasslands Soil	PAKAYPNLLVRKEAHQVATAKVFRFDGSDQLPGAFGDTWGSALQNVIQKPTTSNIKKILSTFQDQIAGKFGS*
Ga0134073_101447542	3300015356	Grasslands Soil	LASAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF*
Ga0134085_103868392	3300015359	Grasslands Soil	LFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF*
Ga0182041_115083322	3300016294	Soil	AAKTVLFDGSDQMPGAFGDTWGFALQKVAQNPSTSNIKSILSGFQNQIKSQWGK
Ga0134069_10608222	3300017654	Grasslands Soil	VFRFDGSDQLPGAFGDTWGAALQNVIQKPSTSSVKKILSTFQGQIEGKFGS
Ga0184610_11229861	3300017997	Groundwater Sediment	NLFVRSEARQLAAAKTFLFDGSHLLPGAFGDTWGFALQDVIQKPGNIKGILSTFQKKIQGEF
Ga0184621_102980261	3300018054	Groundwater Sediment	AEVKHLATPKTFLFDGSDLPLGSFGPAWGLALQDVIQKPGNIKSILSTFQNKIQGQF
Ga0184619_105589021	3300018061	Groundwater Sediment	AQVKTAKVFRFDGSDQLPGAFGDTWGDTLQNVVQKPGDAKNIMSDFQKKISGQFG
Ga0184625_105200972	3300018081	Groundwater Sediment	LARGEAKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQTKIQGQF
Ga0066662_108165022	3300018468	Grasslands Soil	PGAFGDTWGAALQDVIQKPSNIKNIMAAFQKKIQGQF
Ga0184642_12963822	3300019279	Groundwater Sediment	LFDGSDLLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF
Ga0173479_102583152	3300019362	Soil	DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIKGQF
Ga0193704_10556041	3300019867	Soil	LLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIKGQF
Ga0193693_10161163	3300019996	Soil	SVLARAEAHQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGKF
Ga0193721_10940091	3300020018	Soil	SAAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF
Ga0210378_100339683	3300021073	Groundwater Sediment	QLAGAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF
Ga0210381_101676532	3300021078	Groundwater Sediment	AEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0210382_101053672	3300021080	Groundwater Sediment	LLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF
Ga0126371_138861302	3300021560	Tropical Forest Soil	VNSPNKRVSTSAYPNLLVRAEAHQLATAKTFLFDGSDQLPGAFGDTWGFALQDVIQHPGNIKSILSDFQNKIKGQF
Ga0222625_15072982	3300022195	Groundwater Sediment	FDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF
Ga0224452_10137651	3300022534	Groundwater Sediment	SDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF
Ga0224452_12161432	3300022534	Groundwater Sediment	FLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF
Ga0207682_105521392	3300025893	Miscanthus Rhizosphere	APRSRAEAHQLATAKTFVFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF
Ga0207684_100996061	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKNILSTFQGKIQGQF
Ga0207684_103901801	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF
Ga0207646_116979882	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	PSVLARAEAHQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQGKIQGQF
Ga0207694_104739681	3300025924	Corn Rhizosphere	IFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF
Ga0207704_116526491	3300025938	Miscanthus Rhizosphere	KTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0207640_120603801	3300025981	Corn Rhizosphere	FDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQGQF
Ga0209267_12024331	3300026331	Soil	TAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF
Ga0209057_10757671	3300026342	Soil	FRFDGSDQLPGAFGDTWGSALQNVIQKPTTSNIKKILSTFQDQIAGKFGS
Ga0209057_11816672	3300026342	Soil	DGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF
Ga0209159_11167052	3300026343	Soil	AAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0209808_12762392	3300026523	Soil	RATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQSKIQGQF
Ga0209378_11871422	3300026528	Soil	SDLLPGAFGDTWGFALQDVIQHPSNIKSILSTFQGKIQGQF
Ga0209701_101385281	3300027862	Vadose Zone Soil	SPLVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIQGQF
Ga0209590_103457541	3300027882	Vadose Zone Soil	LPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF
Ga0268265_125313292	3300028380	Switchgrass Rhizosphere	LVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0268264_102462023	3300028381	Switchgrass Rhizosphere	FDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQNKIQGQF
Ga0307323_103170971	3300028787	Soil	AKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF
Ga0307323_103520171	3300028787	Soil	FDGSDLLPGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF
Ga0307305_100343604	3300028807	Soil	PGAFGDTWGFALQDVIQKPGDIKSILSTFQNKIKGQF
Ga0307312_105731182	3300028828	Soil	TAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0307278_100389511	3300028878	Soil	AYPSPLVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0307308_100135674	3300028884	Soil	LPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF
Ga0307308_105766022	3300028884	Soil	ATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF
Ga0308200_10585902	3300030905	Soil	VRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQHPGNIKSILSTFQSKIQ
Ga0308190_11726662	3300030993	Soil	VPAKSYPSLFVRAEAKQLASAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQGKIQGQF
Ga0308199_10231311	3300031094	Soil	LVRAEVKQLATAKTFLFDGSDLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQSKIQGQF
Ga0308187_102060712	3300031114	Soil	LPGAFGDTWGFALQDVIQKPGNIKSILATFQGKIQGQF
Ga0307469_116622591	3300031720	Hardwood Forest Soil	DLLPGAFGDTWGFALQDVIQKPGNIKSILSTFQNKIKGQF
Ga0318548_106519871	3300031793	Soil	TAKTVLFDGSDQMPGAFGDTWGFALQKVAQNPSTSNINSILKGFQNQIKSQWGK
Ga0306926_119177162	3300031954	Soil	LATAKTVLFDGSDQMPGAFGDTWGFALQKVAQNPSTSNINSILKGFQNQIKSQWGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077867

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign