Metagenome Family F077868

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077868
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	99 residues
Representative Sequence	MQFKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSHVEHGGS
Number of Associated Samples	67
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	38.46 %
% of genes near scaffold ends (potentially truncated)	19.66 %
% of genes from short scaffolds (< 2000 bps)	82.91 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (77.778 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (24.786 % of family members)
Environment Ontology (ENVO)	Unclassified (52.137 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.410 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.76% β-sheet: 0.00% Coil/Unstructured: 45.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.7.8.1: GAT domain	d1wrda1	1wrd	0.80983
a.47.1.1: STAT	d1uura1	1uur	0.78907
a.7.1.1: Spectrin repeat	d1s35a2	1s35	0.74412
a.47.1.1: STAT	d1bg1a1	1bg1	0.73755
a.7.8.2: Phosphoinositide-binding clathrin adaptor, domain 2	d1hf8a1	1hf8	0.7338

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13414	TPR_11	5.13
PF13424	TPR_12	4.27
PF01068	DNA_ligase_A_M	3.42
PF13431	TPR_17	2.56
PF14354	Lar_restr_allev	1.71
PF07536	HWE_HK	1.71
PF13609	Porin_4	0.85
PF00486	Trans_reg_C	0.85
PF06296	RelE	0.85
PF13432	TPR_16	0.85
PF13474	SnoaL_3	0.85
PF00211	Guanylate_cyc	0.85
PF00872	Transposase_mut	0.85
PF13683	rve_3	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.42
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.42
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	1.71
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	1.71
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85
COG4737	Uncharacterized conserved protein	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
All Organisms	root	All Organisms	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
cellular organisms	root	All Organisms → cellular organisms	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.97 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.26 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.85 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.98 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	5.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.27 %
Chroococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.27 %
Microcystaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.78 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.27 %
Microcystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis	0.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_101448548	Not Available	714	Open in IMG/M
3300001431\|F14TB_104634203	Not Available	660	Open in IMG/M
3300003659\|JGI25404J52841_10030168	Not Available	1162	Open in IMG/M
3300004281\|Ga0066397_10135433	Not Available	550	Open in IMG/M
3300004479\|Ga0062595_102588225	Not Available	508	Open in IMG/M
3300004633\|Ga0066395_10029790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2264	Open in IMG/M
3300004633\|Ga0066395_11020780	Not Available	505	Open in IMG/M
3300005332\|Ga0066388_100089815	All Organisms → cellular organisms → Bacteria → Proteobacteria	3489	Open in IMG/M
3300005332\|Ga0066388_100633871	Not Available	1686	Open in IMG/M
3300005332\|Ga0066388_100992650	Not Available	1405	Open in IMG/M
3300005332\|Ga0066388_101860020	Not Available	1073	Open in IMG/M
3300005332\|Ga0066388_104816725	Not Available	686	Open in IMG/M
3300005332\|Ga0066388_105773028	Not Available	626	Open in IMG/M
3300005341\|Ga0070691_10011170	All Organisms → cellular organisms → Bacteria → Proteobacteria	4099	Open in IMG/M
3300005434\|Ga0070709_11165202	Not Available	618	Open in IMG/M
3300005436\|Ga0070713_102486395	Not Available	500	Open in IMG/M
3300005713\|Ga0066905_100051444	All Organisms → cellular organisms → Bacteria	2525	Open in IMG/M
3300005713\|Ga0066905_100091456	Not Available	2036	Open in IMG/M
3300005713\|Ga0066905_100145668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1697	Open in IMG/M
3300005713\|Ga0066905_100148933	Not Available	1682	Open in IMG/M
3300005713\|Ga0066905_100431437	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300005713\|Ga0066905_100582996	Not Available	944	Open in IMG/M
3300005713\|Ga0066905_101898166	Not Available	551	Open in IMG/M
3300005713\|Ga0066905_102231868	Not Available	511	Open in IMG/M
3300005764\|Ga0066903_100102555	Not Available	3874	Open in IMG/M
3300005764\|Ga0066903_100560321	Not Available	1963	Open in IMG/M
3300005764\|Ga0066903_100592808	Not Available	1917	Open in IMG/M
3300005764\|Ga0066903_100618407	Not Available	1883	Open in IMG/M
3300005764\|Ga0066903_101832890	Not Available	1160	Open in IMG/M
3300005764\|Ga0066903_104272234	Not Available	764	Open in IMG/M
3300005843\|Ga0068860_100728523	Not Available	1002	Open in IMG/M
3300005937\|Ga0081455_10423485	Not Available	917	Open in IMG/M
3300005983\|Ga0081540_1035277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2684	Open in IMG/M
3300005983\|Ga0081540_1040426	Not Available	2431	Open in IMG/M
3300005983\|Ga0081540_1049196	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300006058\|Ga0075432_10449889	Not Available	565	Open in IMG/M
3300006163\|Ga0070715_10193659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1028	Open in IMG/M
3300006163\|Ga0070715_10201012	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300006175\|Ga0070712_101422442	Not Available	605	Open in IMG/M
3300006196\|Ga0075422_10296243	Not Available	692	Open in IMG/M
3300006852\|Ga0075433_10022528	All Organisms → cellular organisms → Bacteria → Proteobacteria	5287	Open in IMG/M
3300006904\|Ga0075424_101200058	Not Available	808	Open in IMG/M
3300009081\|Ga0105098_10384460	Not Available	693	Open in IMG/M
3300009094\|Ga0111539_10060310	All Organisms → cellular organisms → Bacteria	4496	Open in IMG/M
3300009094\|Ga0111539_10283847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1927	Open in IMG/M
3300009100\|Ga0075418_10050635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4455	Open in IMG/M
3300009146\|Ga0105091_10049393	Not Available	1867	Open in IMG/M
3300009146\|Ga0105091_10143530	Not Available	1116	Open in IMG/M
3300009156\|Ga0111538_10166798	Not Available	2797	Open in IMG/M
3300009157\|Ga0105092_10310621	Not Available	890	Open in IMG/M
3300009168\|Ga0105104_10227788	Not Available	1015	Open in IMG/M
3300009792\|Ga0126374_10611144	Not Available	806	Open in IMG/M
3300010043\|Ga0126380_10220088	Not Available	1288	Open in IMG/M
3300010043\|Ga0126380_10340351	Not Available	1087	Open in IMG/M
3300010046\|Ga0126384_10063716	Not Available	2593	Open in IMG/M
3300010046\|Ga0126384_11135626	Not Available	718	Open in IMG/M
3300010047\|Ga0126382_10018201	Not Available	3588	Open in IMG/M
3300010047\|Ga0126382_10039231	Not Available	2677	Open in IMG/M
3300010047\|Ga0126382_10506140	Not Available	972	Open in IMG/M
3300010047\|Ga0126382_10653725	Not Available	874	Open in IMG/M
3300010047\|Ga0126382_12416522	Not Available	511	Open in IMG/M
3300010358\|Ga0126370_10217091	Not Available	1458	Open in IMG/M
3300010358\|Ga0126370_10276244	Not Available	1318	Open in IMG/M
3300010359\|Ga0126376_10395052	Not Available	1244	Open in IMG/M
3300010359\|Ga0126376_10722064	Not Available	962	Open in IMG/M
3300010360\|Ga0126372_10181624	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300010360\|Ga0126372_10352189	Not Available	1321	Open in IMG/M
3300010360\|Ga0126372_12844462	Not Available	536	Open in IMG/M
3300010362\|Ga0126377_10601862	Not Available	1144	Open in IMG/M
3300010362\|Ga0126377_10999870	Not Available	903	Open in IMG/M
3300010362\|Ga0126377_11031503	Not Available	890	Open in IMG/M
3300010362\|Ga0126377_11419901	Not Available	767	Open in IMG/M
3300010362\|Ga0126377_12654157	Not Available	576	Open in IMG/M
3300010362\|Ga0126377_13163228	Not Available	532	Open in IMG/M
3300010366\|Ga0126379_10010632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6453	Open in IMG/M
3300010366\|Ga0126379_10839075	Not Available	1019	Open in IMG/M
3300010376\|Ga0126381_101070650	Not Available	1164	Open in IMG/M
3300010398\|Ga0126383_11109285	Not Available	881	Open in IMG/M
3300010400\|Ga0134122_10285932	Not Available	1409	Open in IMG/M
3300010400\|Ga0134122_10505685	Not Available	1095	Open in IMG/M
3300012487\|Ga0157321_1042442	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300012948\|Ga0126375_10140126	Not Available	1508	Open in IMG/M
3300012948\|Ga0126375_10211955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1281	Open in IMG/M
3300012958\|Ga0164299_10615156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	745	Open in IMG/M
3300012988\|Ga0164306_10955723	Not Available	702	Open in IMG/M
3300012989\|Ga0164305_10265512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1249	Open in IMG/M
3300015371\|Ga0132258_10385496	Not Available	3478	Open in IMG/M
3300015371\|Ga0132258_12506838	Not Available	1290	Open in IMG/M
3300016341\|Ga0182035_10849759	Not Available	803	Open in IMG/M
3300016357\|Ga0182032_10061327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2494	Open in IMG/M
3300016404\|Ga0182037_10537241	Not Available	985	Open in IMG/M
3300021432\|Ga0210384_10778770	Not Available	854	Open in IMG/M
3300025905\|Ga0207685_10161101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis	1024	Open in IMG/M
3300025938\|Ga0207704_10799965	Not Available	787	Open in IMG/M
3300027743\|Ga0209593_10106642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1028	Open in IMG/M
3300027907\|Ga0207428_10031516	All Organisms → cellular organisms → Bacteria	4371	Open in IMG/M
3300027907\|Ga0207428_10886537	Not Available	631	Open in IMG/M
3300027907\|Ga0207428_11164569	Not Available	537	Open in IMG/M
3300031184\|Ga0307499_10056072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	980	Open in IMG/M
3300031184\|Ga0307499_10118212	Not Available	745	Open in IMG/M
3300031545\|Ga0318541_10548453	Not Available	647	Open in IMG/M
3300031679\|Ga0318561_10618952	Not Available	596	Open in IMG/M
3300031720\|Ga0307469_10217090	Not Available	1509	Open in IMG/M
3300031720\|Ga0307469_10876863	Not Available	829	Open in IMG/M
3300031720\|Ga0307469_11228199	Not Available	709	Open in IMG/M
3300031720\|Ga0307469_11333985	Not Available	682	Open in IMG/M
3300031740\|Ga0307468_100073934	Not Available	1907	Open in IMG/M
3300031740\|Ga0307468_100181048	Not Available	1399	Open in IMG/M
3300031740\|Ga0307468_100646354	Not Available	873	Open in IMG/M
3300031747\|Ga0318502_10443599	Not Available	775	Open in IMG/M
3300031820\|Ga0307473_10819973	Not Available	665	Open in IMG/M
3300031833\|Ga0310917_10728989	Not Available	671	Open in IMG/M
3300031912\|Ga0306921_10634321	Not Available	1233	Open in IMG/M
3300031942\|Ga0310916_11025335	Not Available	688	Open in IMG/M
3300031946\|Ga0310910_10358540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1153	Open in IMG/M
3300032001\|Ga0306922_12216186	Not Available	529	Open in IMG/M
3300032180\|Ga0307471_101101588	Not Available	960	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.05%
Host-Associated	Host-Associated	17.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.92%
Plants	Host-Associated → Plants	17.95%
Aquatic	Environmental → Aquatic	5.13%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.40%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.55%
Freshwater	Environmental → Aquatic → Freshwater	5.13%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.57%
Loam	Environmental → Terrestrial → Soil → Loam	27.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.13%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.27%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1014485482	3300000559	Soil	MRFKNELKIREAWQIVASGREQWKQTGSIEPAHLATLRKVQIDMAQDLARFEDGPAVLFTAWSKRRRLRHIEQIASDLICLSEQRATRCASGAERGGS*
F14TB_1046342032	3300001431	Soil	RGELCGVYMRFKNELKIREAWQIVASGREQWKQTGSIEPAHLATLRKVQIDMAQDLARFEDGPAVLFTAWSKRRRLRHIEQIASDLICLSEQRATRCASGAERGGS*
JGI25404J52841_100301682	3300003659	Tabebuia Heterophylla Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIDMAQHLVRFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEHRATPCVSHVEYGGS*
Ga0066397_101354332	3300004281	Tropical Forest Soil	MRFTSELTIKAAWRIVASGHEQWEQTGSIEPDHLVKVRKVQIEMAQHLAHFEDGPAIFFSAWSTRRRLRHIEQIASDLICLSNQGATRLATGAERSWRRGP*
Ga0062595_1025882252	3300004479	Soil	MQFKNELTIREAWQIVSAGHEQWEQTGSIEPEHLATVRSVQIDMAQHLARFEDGPAVLFTAWSKRLQLRRIEQMASDLICLSEQRATPCVSHIEHGGS*
Ga0066395_100297904	3300004633	Tropical Forest Soil	MRFTGERTIRAAWQIVALGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRH*
Ga0066395_110207801	3300004633	Tropical Forest Soil	MRAAWRIVSAGHEQWEQTGSIEPEHLATVRKVQVEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSERGARRCESGAEPGSS*
Ga0066388_1000898154	3300005332	Tropical Forest Soil	MRFKGELTIRAAWQIVSAGHEQWEQTGSIEPEDLATVRKVQIDMAQHLAKFEDGPAVLFTAWSTRRQLRHIEQMASDLICLSDQRATPCVSPAERGRF*
Ga0066388_1006338713	3300005332	Tropical Forest Soil	MRFPRELKIRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSE
Ga0066388_1009926502	3300005332	Tropical Forest Soil	MQIKSELKIREACRIVASGHKQWEQTGSIEPVHLSKMRKVQIDIAQHLAKFKDVSTRRRLRHIEQIASDLIFLSEQGATRRASGAECGVL*
Ga0066388_1018600201	3300005332	Tropical Forest Soil	MRYPNEMTIRTAWRIVSSGHERWEQVGSIEPEYLATVRKVQIDMAQHLARFEDGPAVLFTSWSTRRQLRQIEQMASDLICLSEQRATRCTAGC*
Ga0066388_1048167251	3300005332	Tropical Forest Soil	MQFKGELKIRAAWRIVASAHEQWQQTGLIEPEQLATVRRVQIEMAQHLAKFEDGPAVLFTAWNMRRQLRHIEQMASDLICLSEEHATRGASGVERAGS*
Ga0066388_1057730281	3300005332	Tropical Forest Soil	MARGVPMRFKGELTIRAAWRIVASGHEQLERAGFIEPEHLATVRKVQIETAQYLARFEDGPAVLFTAWSTRRQLRHIEQMASDLICSSDQRAMGCASGAERGGSEIRSPWLTPANGCR*
Ga0070691_100111702	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSHVEHGGS*
Ga0070709_111652022	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRFTGEWTIRAAWEIVALGQEQWEQTRSIRPKHLAKVRKVQIEMAQHLASFEDGPAVLFTALSTRRQLRHIEQMASELICLSDQHATLRASGPDRG*
Ga0070713_1024863951	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQFISEWKIREAWRIVATGHEQWEQIGSIEPEHLATVRTVQIDMAQHLARFEDGSAVLFTALSKRRQLRHIEQMASDLICLSEQRAMHGQHTYTAVISSLD
Ga0066905_1000514443	3300005713	Tropical Forest Soil	MQTKSELKIREACRIVASGHEQWEKTGSIEPVHLVRMRKVQIEIAQHLAKFKDGSIRRRLRHIEQIASDLIFLSEQGATRRASRAVGFGGS*
Ga0066905_1000914562	3300005713	Tropical Forest Soil	MRYPSELKIRAAWRIVSAGHEQWEQTGSMEPGHLATVRKVQIEMAQHLARCEDGPAVLCTAWSTRRQLRHIEQIASDLICLSERHAMACASRAEPAGS*
Ga0066905_1001456682	3300005713	Tropical Forest Soil	MRFKGELTIRAAWQIVSAGHEQWEQTGSIEPEDLATVRKVQIDMAQHLAKFEDGPAVLFTAWSTRHQLRHIEQMASDLICLSDQRATSCATPAERGGL*
Ga0066905_1001489331	3300005713	Tropical Forest Soil	MRFPSEMKIRAAWRIVSSGHERWEQTGSIEPEHLATVRKVQIDMAQHLASFEDGPAVVFTTSSKRRQLRHIEQMASDLICLSEQRATRCAAGF*
Ga0066905_1004314371	3300005713	Tropical Forest Soil	VVFYSGEISKGTAQRVVWGIAMRFPRELKIRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSERGARRCESGAEPGSS*
Ga0066905_1005829962	3300005713	Tropical Forest Soil	MRFKGELTIRAAWQIVSAGHEQWEQTGSIEPEDLATVRKVQIDMAQHLAKFEDGPAVLFTAWSTRRQLRHIEQMASDLICLSDQRAMSCPTPAERSGL*
Ga0066905_1018981661	3300005713	Tropical Forest Soil	MRFTRELTIRAAWLIVVSGREQWEQTGSIEAEQLTKVRKVQIEMAQHLAYFEDGLAVLFTAWSTRRQLRHIEQMATDLIC
Ga0066905_1022318682	3300005713	Tropical Forest Soil	MRFTSEMTIRAAWRIVASGQEQWEQTGSIEPRQLAKVRKVQIDMAQHLARFEDGPAVLFTSWSVRRQLRYIEQMASDLICLSDQDATHCASGAEPPSRNFSDLSPPSTAAKQPSRGRVAS
Ga0066903_1001025553	3300005764	Tropical Forest Soil	VVWGIAMRFPRELKIRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSERGARRCESGAEPGSS*
Ga0066903_1005603213	3300005764	Tropical Forest Soil	MRFTGERTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQQANLLGSEPRPLDIG*
Ga0066903_1005928084	3300005764	Tropical Forest Soil	MRFTGEQTIRAAWQIVSLGQEQWEQTHSIEPKHLAKVRKVQIEMAQHLASFEDGPAVLFTARSTRRQLRYIEQMASELICLSM*
Ga0066903_1006184072	3300005764	Tropical Forest Soil	MRFPSEMKIRAAWRIVSSGHERWEQTGSIEPEHLATVRKVQIDMAQHLANFEDGPAVVFTASSKRCQLRHIEQMASDLICLSEQRTTRCAAGF*
Ga0066903_1018328902	3300005764	Tropical Forest Soil	MRFTSELTIKAAWRIVASGREQWEKTGTIEPERLAKVRKVQIEMAQHLAHFEDGLAVLFTPWSTRRRLRHIEQMASDLICSSDQGARHCASGAGSAQ*
Ga0066903_1042722341	3300005764	Tropical Forest Soil	MRFTSELTIKAAWRIVASGREQWEQSGMIEPERLAKIRRVQIEMAQHLAHFEDGLAVLFTAWSMRRQLRHIEQMASDLICLSDQGATRCTSAASSRLCAPSQTLVRTRPRYSAPS*
Ga0068860_1007285232	3300005843	Switchgrass Rhizosphere	MQLKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSHVEHGGS*
Ga0081455_104234852	3300005937	Tabebuia Heterophylla Rhizosphere	MQYKSELKIREAWRIVVSGHEQWEQTGSIEHEHLATVRKVQIDMAQHLAKFEDGPAVLFTASSKRRQLRHIEQMASDLIGWSEQRATPRVCHPEHGGS*
Ga0081540_10352773	3300005983	Tabebuia Heterophylla Rhizosphere	VGCTMQFKRERTIREAWRIVALGHEQWEQTGSIETEHLASVRKVQIDMAQHLARFEDGPAVLFTAWSTRRQLRHIEQMASDLIGLSEQRSTPSHVVSNQPELTS*
Ga0081540_10404264	3300005983	Tabebuia Heterophylla Rhizosphere	MQIKSELKIREACRIVASGHEQWEQTGSIEPEHLAKMRKVQIEIAQHLAKFEDGLAVLFTAWSKRRQLRHIEQIASDLICLSEQGATPGASGSKAASL*
Ga0081540_10491962	3300005983	Tabebuia Heterophylla Rhizosphere	MRFKSELTISAACRIIASGHEQWQQTGSIEPEQLARVRKVQIEIAQSLARFDDGPAVLFTTWSTLEEIASDLICLSEQRATRCASGAEAASI*
Ga0075432_104498891	3300006058	Populus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGTIEPEHLATVRTVQIEMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSC*
Ga0070715_101936591	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRFKSELKIREAWRIVASGHEQWEQTGSIDPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRARRCAAIREWCVDRQYLPNFSYGC*
Ga0070715_102010122	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VVWGLAMQFKGELKIRAAWRIVASGHERWEHTGSIEPEHLATVRKVQIDMAQYLAKFEDGPAVLFTAWSIRRQLRHIEQMASDLICLSEQGAAHCASGCLGREPHPADNP*
Ga0070712_1014224421	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQFISEWKIREAWRIVATGHEQWEQIGSIEPEHLATVRTVQIDMAQHLARFEDGSAVLFTALSKRRQLRHIEQMASDLICLSEQRAMHGQHTYTAVISSLDCGTGKLARF*
Ga0075422_102962432	3300006196	Populus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGTIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSC*
Ga0075433_100225285	3300006852	Populus Rhizosphere	MIREAWQIVSAGHEQWEQTGFIEPEHLATVRTVQIDMAQHLAKFEDGPAVLFTAWSKRLQLRRIEQMASDLICLSEQRAIPCVSHVVHGGL*
Ga0075424_1012000582	3300006904	Populus Rhizosphere	PMQFKSELMIREAWRIVASGHEQWEQTGTIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSC*
Ga0105098_103844601	3300009081	Freshwater Sediment	MRFNSELKIREAWRVVASGHEQWEQTGSIEPEQLATVRKVQIDTAQHLAKFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQCATHCASGAGRGGS*
Ga0111539_100603103	3300009094	Populus Rhizosphere	MQFKSELMIREAWQIVSAGHEQWEQTGFIEPEHLATVRTVQIDMAQHLAKFEDGPAVLFTAWSKRLQLRRIEQMASDLICLSEQRAIPCVSHVVHGGL*
Ga0111539_102838473	3300009094	Populus Rhizosphere	MQYKRELAIREAWQIVASGHEQWEQIGSIEKAHLARVRNVQIDMAQHLAKFEDGPAVLFTAWSMRRPLRHIEQMASDLICLSEQRAASLHR*
Ga0075418_100506351	3300009100	Populus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGTIEPEHLATVRTVQIDMAPTPRQVRGRAPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSHVEHGGS*
Ga0105091_100493931	3300009146	Freshwater Sediment	MRFKSELTIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQINMAQHLAKFEAGPAVMFTAWSKRRQLRHIEQMASDLICLSEQRATNCKSHAEHKGIEAVAVSPSAFSGEITKDIGTQV
Ga0105091_101435301	3300009146	Freshwater Sediment	MRFNSELKIREAWRVVASGHEQWEQTGSIEPEQLATVRKVQIDTAQHLAKFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRATHCASGAGRGSS*
Ga0111538_101667983	3300009156	Populus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIEMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICSSEKRQTPRVSHVEHGTAHCRSQYR*
Ga0105092_103106211	3300009157	Freshwater Sediment	MRFKSELTIREAWRVVASGHEQWEQTGSIEPEQLATVRKVQIDTAQHLAKFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRATSCKSHAEHKGIEAGAVSPSAFSGKITKGIGTQV
Ga0105104_102277881	3300009168	Freshwater Sediment	MRFKSELTIREAWRVVASGHEQWEQTGSIEPEQLATVRKVQIDTAQHLAKFEDGPAVLFTAWSKRLQLRHIEQMASDLICLSEQCATHCASGAGRGGS*
Ga0126374_106111442	3300009792	Tropical Forest Soil	MRFPSEMKIRAAWRIVSSGHERWEQTGSIEPEHLATVRKVQIDMAQRLANFEDGPAVVFTTSSKRRQLRHIEQMASDLIGLSEQRATRCAAGF*
Ga0126380_102200882	3300010043	Tropical Forest Soil	MRFTGQRTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLAHFEDGPAILFTAWSTRRQLRQIEQTASDLICLSERHAMASASGAEPAG
Ga0126380_103403512	3300010043	Tropical Forest Soil	MRYPSELKIRAAWRIVSAGHEQWEQTGSMEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSERHAMASASGAEPAGS*
Ga0126384_100637162	3300010046	Tropical Forest Soil	MRFPSEMKIRAAWRIVSSGHERWEQTGSIEPEHLATVRKVQIDMAQHLASFEDGPAVVFTASSKRRQLRHIEQMASDLICLSEQRATRCAAGF*
Ga0126384_111356261	3300010046	Tropical Forest Soil	MRFTGQRTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQQANLLGREPRPLDIG*
Ga0126382_100182012	3300010047	Tropical Forest Soil	MRYPSELKIRAAWRIVSAGHEQWEQTGSMEPGHLATVRKVQIEMAQHLARCEDGPAVLCTAWSTRRQLRHIEQIASDLICLSERHAMASASGAEPAGS*
Ga0126382_100392313	3300010047	Tropical Forest Soil	MRFPRELKIRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSERGARRCESGAEPGSS*
Ga0126382_105061401	3300010047	Tropical Forest Soil	MRFKSEFNIRQAWRIVGSGHEQWEQTGSIEPKQLAKMRKVQIEIAQQLARFEDGPAVLVTAWSTRRQLRHIEQIASDLICLSEQHTTRCASGAKATSL*
Ga0126382_106537251	3300010047	Tropical Forest Soil	MRFTSELTIKAAWRIVASGHEQWEQTGSIEPDHLVKVRKVQIEMAQHLAHFEDGPAILFTAWSTRRQLRHIEQTASDLICLSAQGATRGASGREAGSL*
Ga0126382_124165221	3300010047	Tropical Forest Soil	MRFTRELTIRAAWLIVVSGREQWEQTGSIEAEQLTKVRKVQIEMAQHLAYFEDGLAVLFTARSTRRQLRHIEQMASDLICLCDLAATRSASGAEAASPSGLSAPSQMLPR
Ga0126370_102170911	3300010358	Tropical Forest Soil	MKSLISNFFDEWVLSMRFTGEQTIRAAWQIVSLGQEQWEQTHSIEPKHLAKVRKVQIEMAQHLASFEDGPAVLFTARSTRRQLRYIEQMASELICLSM*
Ga0126370_102762443	3300010358	Tropical Forest Soil	MRFTGERTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQQANL*
Ga0126376_103950522	3300010359	Tropical Forest Soil	MRFTGERTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRYIEQMASELICLSM*
Ga0126376_107220641	3300010359	Tropical Forest Soil	MRFPSEMKIRAAWRIVSSGHERWEQTGSIEPEHLATVRKVQIDMAQRLANFEDGPAVVFTTSSKRRQLRHIEQMASDLICLSEQRATRCAAGF*
Ga0126372_101816242	3300010360	Tropical Forest Soil	MRFPRELKIRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSEQGARRCGSGAEPGSS*
Ga0126372_103521891	3300010360	Tropical Forest Soil	MRFKGELTIRAAWQIVSAGHEQWEQTGSIEPEDLATVRKVQIDMAQHLAKFEDGPAVLFTAWSTRRQLRHIEQMASDLICLSDQRATHCATPAERGRF*
Ga0126372_128444621	3300010360	Tropical Forest Soil	VISAAWQIFALGQEQWEQTHSIKPKHLVKVRKVQIEVAQHLARFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0126377_106018622	3300010362	Tropical Forest Soil	MQTKSELKIREACRIVASGHEQWEKTGSIEPVHLVRMRKVQIEIAQHLAKFKDGSIRRRLRHIEQIASDLIFLSEQGTTRRASGAGCVLL*
Ga0126377_109998702	3300010362	Tropical Forest Soil	MRFRNERTIRAAWRIVSTGLEQWAQTGSIEPEHLATVRTVQIDMAQYLAKFEDGPAVLFTAWSTRRLLRHIEQIASDLICLSGQRATSCATGGETASI*
Ga0126377_110315032	3300010362	Tropical Forest Soil	MRFTSELTIKAAWRIVASGHEQWKQTGSIEPDNLVRVRKVQIEMAQHLAHFEDGPAILFTAWSTRRQLRHIEQTASDLICLSDQGATRGASGREAGSL*
Ga0126377_114199011	3300010362	Tropical Forest Soil	MRFTGEGTIRAAWEIVALGQEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQQANLLGREPRPLDIG*
Ga0126377_126541571	3300010362	Tropical Forest Soil	IRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSERSARRCGSGAEPGSS*
Ga0126377_131632281	3300010362	Tropical Forest Soil	RGGVAVTPSIFEGNCQEYCSEWCGVYQMQIKSELKIREACRIVASGHEQWEQTGSIEPVHLAKMRKVQIEIAQHLARFEDGSTRRRLRHIEQIASDLIFLSEQGATSRASVAEWDAL*
Ga0126379_100106324	3300010366	Tropical Forest Soil	RAAWQIVALGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRH*
Ga0126379_108390751	3300010366	Tropical Forest Soil	MRFTGERTIRAAWQIVTLGQEQWEQTRSIKPMHLAKVRKVQIEMAQHLASFEDGPAVLFTAWSTRRQLRHIEQMASELIC
Ga0126381_1010706501	3300010376	Tropical Forest Soil	MRFTGERTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQQANLLGREPRPLDIG*
Ga0126383_111092851	3300010398	Tropical Forest Soil	IFSTCGVVLPMRFTGERTIRVAWQIVSLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQQANLLGSEPRPLDIG*
Ga0134122_102859322	3300010400	Terrestrial Soil	MRFKSELGIREAWRIVASGHEQWEQTGSIEPEHLAKMRKVQIEIAQHLARFEDGPAILFTACSTRRQLRHVEQIASDLICLSEQRATRCAFGAEAASL*
Ga0134122_105056853	3300010400	Terrestrial Soil	PMQFKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSHVEHGGS*
Ga0157321_10424421	3300012487	Arabidopsis Rhizosphere	MQFMSEREMRKAWRIVASGHDQWEQTGSIEPEHLATVRKMQIEIAQRLARFEDGLAVLFTPWNTRRQLRHIEQSASDLI
Ga0126375_101401261	3300012948	Tropical Forest Soil	MRFPRELKIRAAWRIVSAGHEQWEQTGSIEPGHLATVRKVQIEMAQHLARFEDGPAVLFTAWTTRRQLRHIEQIASDLICLSEQHARGCISGAEPGGS*
Ga0126375_102119552	3300012948	Tropical Forest Soil	VSAGHEQWEQTGSIEPEDLATVRKVQIDMAQHLAKFEDGPAVLFTAWSTRRQLRHIEQMASDLICLSDQRAMSCPTPAERSGL*
Ga0164299_106151561	3300012958	Soil	MRFKSELKIREAWRIVASGHEQWDQTGSIDPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRARRCAAIREWCVDRQYLPNFSYGC*
Ga0164306_109557231	3300012988	Soil	MQFKGELKIRAAWRIVASGHERWEHTGSIEPEHLATVRKVQIDMAQYLAKFEDGPAVLFTAWSIRRQLRHIEQMASDLICLSEQGAARCASGCLGKEPHPADNP*
Ga0164305_102655122	3300012989	Soil	MRFKSELKIREAWRIVASGQEQWEQTGSIDPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRARRCAAIREWCVDRQYLPNFSYGC*
Ga0132258_103854962	3300015371	Arabidopsis Rhizosphere	MQFMSEREMRKAWRIVASGHDQWEQTGSIEPEHLATVRKMQIEIAQRLARFEDGLAVLFTPWSTRRQLRHIEQSASDLIYLSEQRARNRTSGAERGGL*
Ga0132258_125068382	3300015371	Arabidopsis Rhizosphere	MQYKRELTIRQAWQIVASGHARWEQTGSIEKAHLAKVRMVQIDMAQHLAKFEDGPAVLFTAGTTRRLLRHIEQMASDLICLSEQRAASLHR*
Ga0182035_108497592	3300016341	Soil	MQSLIMNFFDEWVLPMRFTGERTIRAAWQIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0182032_100613274	3300016357	Soil	MRFTGERTIRAAWHIVTLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0182037_105372411	3300016404	Soil	MRFTGERTIRAAWQIVALGHEQWEQTHSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0210384_107787702	3300021432	Soil	MRFTGEWTIRAAWEIVALGQEQWEQTRSIRPKHLAKVRKVQIEMAQHLASFEDGPAVLFTALSTRRQLRHIEQMASELICLSDQHATLGASG
Ga0207685_101611012	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VVWGLAMQFKGELKIRAAWRIVASGHERWEHTGSIEPEHLATVRKVQIDMAQYLAKFEDGPAVLFTAWSIRRQLRHIEQMASDLICLSEQGAAHCASGCLGREPHPADNP
Ga0207704_107999651	3300025938	Miscanthus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGSIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSHVEHGGS
Ga0209593_101066422	3300027743	Freshwater Sediment	MRFKSELKIREAWQIVASGHEQWEQTGSIEPEHLATVRTVQINMAQHLAKFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRASRCAVIREWCVDRQYLPNFSCGC
Ga0207428_100315163	3300027907	Populus Rhizosphere	MIREAWQIVSAGHEQWEQTGFIEPEHLATVRTVQIDMAQHLAKFEDGPAVLFTAWSKRLQLRRIEQMASDLICLSEQRAIPCVSHVVHGGL
Ga0207428_108865371	3300027907	Populus Rhizosphere	MQFKSELMIREAWRIVASGHEQWEQTGTIEPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEKRPTPCVSC
Ga0207428_111645691	3300027907	Populus Rhizosphere	MQYKRELAIREAWQIVASGHEQWEQIGSIEKAHLARVRNVQIDMAQHLAKFEDGPAVLFTAWSMRRPLRHIEQMASDLICLSEQRAASLHR
Ga0307499_100560721	3300031184	Soil	MRFNSERRIREAWRIVASGLEQWEQTASIDPERLATVRTVQIDMAQDLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRASRCAVIREWCVDRQYLPNFSCGC
Ga0307499_101182122	3300031184	Soil	MRFNSERRIREAWRIVASGLEQWEQTGSIEPEHLTTVRTVQIDMAQHLARFEDGPAVLFTTWSKRRELRHIEQIASDLICLSEQRATHRASGAERGGS
Ga0318541_105484531	3300031545	Soil	MRFTGERTIRAAWEIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0318561_106189522	3300031679	Soil	MQSLIMNFFDEWVLPMRFTGERTIRAAWEIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0307469_102170902	3300031720	Hardwood Forest Soil	VVWGVPMRFNSERRIREAWRIVASGLEQWEQTGSIEPEHLATVRTVQIDMAQHLVRFEDGPAVLFTTWSKRRQLRHIEQIASDLICLSEQRATHCASGAERGGS
Ga0307469_108768632	3300031720	Hardwood Forest Soil	MRFKSELKIREAWRIVASGHEQWEQTGSIDPEHLATVRTVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRARRCAAIREWCVDRQYLPNFSYGC
Ga0307469_112281991	3300031720	Hardwood Forest Soil	MRFKNQLKIREAWRIVASGQQQWEQTGSIEPEHLATVRTVQIDMAQHLAKFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRATHRASHAEHGGS
Ga0307469_113339851	3300031720	Hardwood Forest Soil	MQFKSERTIREAWRIVALGHEQWEQTGSIETEHLATVRKVQIDMAQHLAKFEDGPAVLFTAWSTRRQLRHIEQMASDLIGLSEQRTTPSHLVLNQPELTS
Ga0307468_1000739343	3300031740	Hardwood Forest Soil	VVWGVPMRFNSERRIREAWRIVASGLEQWEQTGSIEPEHLATVRTVQIDMAQHLVRFEDGPAVLFTTWSKRRQLRHIEQIASDLICLSEQRATHCASGAERGGP
Ga0307468_1001810481	3300031740	Hardwood Forest Soil	MRFKNQLKIREAWRIVASGQQQWEQTGSIEPEHLATVRTVQIDMAQHLAKFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRATHRASHAEHGG
Ga0307468_1006463541	3300031740	Hardwood Forest Soil	MRFKSELKIREAWQIVASGHEQWEQTGSIEPEHLATVREVQIDMAQHLARFEDGPAVLFTAWSKRRQLRHIEQMASDLICLSEQRARRCSAIREWCVDRQYLPNFSYGC
Ga0318502_104435991	3300031747	Soil	MRFTGERTIRAAWHIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0307473_108199731	3300031820	Hardwood Forest Soil	MRFNSERRIREAWRIVASGLEQWEQTGSIEPEHLATVRTVQIDMAQHLVRFEDGPAVLFTTWSKRRQLRHIEQMASDLICLSEQRARRCTSGAERGGS
Ga0310917_107289891	3300031833	Soil	MQSLIMNFFDEWVLPMRFTGERTIRAAWQIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASG
Ga0306921_106343211	3300031912	Soil	MRFTGERTIRAAWEIVTLGHEQWEQTRSIKPKHLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0310916_110253352	3300031942	Soil	TIRAAWQIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0310910_103585402	3300031946	Soil	MRFTGERTIRAAWQIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0306922_122161861	3300032001	Soil	WEIVTLGHEQWEQTRSIKPKDLAKVRKVQIEMAQHLANFEDGPAVLFTARSTRRQLRHIEQMASELICLSDQHATLRASGPDRG
Ga0307471_1011015882	3300032180	Hardwood Forest Soil	MRFNSERRIREAWRIVASGLEQWEQTGSIEPEHLATVRTVQIDMAQHLVRFEDGPAVLFTTWSKRRQLRHIEQIASDLICLSEQRAMHCASGAERGGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077868

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences