Metagenome / Metatranscriptome Family F077881

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077881
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	80 residues
Representative Sequence	MSQILKFPDSLSQRMPNDGTPKEASAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRYCRSIGGD
Number of Associated Samples	66
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.36 %
% of genes near scaffold ends (potentially truncated)	35.90 %
% of genes from short scaffolds (< 2000 bps)	81.20 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.556 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.060 % of family members)
Environment Ontology (ENVO)	Unclassified (41.026 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.880 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.13% β-sheet: 0.00% Coil/Unstructured: 68.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00313	CSD	7.69
PF13473	Cupredoxin_1	5.13
PF07045	DUF1330	3.42
PF11026	DUF2721	1.71
PF13458	Peripla_BP_6	1.71
PF01391	Collagen	1.71
PF11154	DUF2934	1.71
PF00881	Nitroreductase	0.85
PF12570	DUF3750	0.85
PF13561	adh_short_C2	0.85
PF07813	LTXXQ	0.85
PF00293	NUDIX	0.85
PF00211	Guanylate_cyc	0.85
PF00037	Fer4	0.85
PF12973	Cupin_7	0.85
PF05114	DUF692	0.85
PF00872	Transposase_mut	0.85
PF13602	ADH_zinc_N_2	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.42
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	3.42
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.85
COG3220	Uncharacterized conserved protein, UPF0276 family	Function unknown [S]	0.85
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.86 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.15 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	43.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	41.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	36.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6.84 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	5.13 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.71 %
Bradyrhizobium centrolobii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	0.85 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6.84 %
Bradyrhizobium sp. dw_411	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	3.42 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.71 %
Bradyrhizobium sp. LTSP885	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885	0.85 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.85 %
Bradyrhizobium centrolobii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	0.85 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10003965	All Organisms → cellular organisms → Bacteria → Proteobacteria	4307	Open in IMG/M
3300005434\|Ga0070709_10296990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1179	Open in IMG/M
3300005434\|Ga0070709_10740106	Not Available	768	Open in IMG/M
3300005435\|Ga0070714_100021885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5235	Open in IMG/M
3300005436\|Ga0070713_101705408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	611	Open in IMG/M
3300005437\|Ga0070710_10020217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3450	Open in IMG/M
3300005437\|Ga0070710_10026477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3081	Open in IMG/M
3300005437\|Ga0070710_10884769	Not Available	644	Open in IMG/M
3300006028\|Ga0070717_11005117	Not Available	760	Open in IMG/M
3300006041\|Ga0075023_100348760	Not Available	625	Open in IMG/M
3300006050\|Ga0075028_100789785	Not Available	578	Open in IMG/M
3300006163\|Ga0070715_10018830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2638	Open in IMG/M
3300006163\|Ga0070715_10951648	Not Available	532	Open in IMG/M
3300006172\|Ga0075018_10309785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	781	Open in IMG/M
3300006173\|Ga0070716_100260337	Not Available	1187	Open in IMG/M
3300006173\|Ga0070716_100810781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300006173\|Ga0070716_101623233	Not Available	532	Open in IMG/M
3300006174\|Ga0075014_100191144	Not Available	1026	Open in IMG/M
3300006175\|Ga0070712_100350815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1207	Open in IMG/M
3300006175\|Ga0070712_100447195	Not Available	1075	Open in IMG/M
3300006354\|Ga0075021_10809032	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300011120\|Ga0150983_15600773	Not Available	634	Open in IMG/M
3300012957\|Ga0164303_10626507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	713	Open in IMG/M
3300012960\|Ga0164301_11636880	Not Available	535	Open in IMG/M
3300012961\|Ga0164302_10224956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1173	Open in IMG/M
3300012986\|Ga0164304_10547792	Not Available	854	Open in IMG/M
3300012986\|Ga0164304_10650873	Not Available	794	Open in IMG/M
3300012989\|Ga0164305_11024480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	703	Open in IMG/M
3300013296\|Ga0157374_12838364	Not Available	512	Open in IMG/M
3300017974\|Ga0187777_10968153	Not Available	614	Open in IMG/M
3300020579\|Ga0210407_10002611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	15350	Open in IMG/M
3300020579\|Ga0210407_10012947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	6206	Open in IMG/M
3300020579\|Ga0210407_10511897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	938	Open in IMG/M
3300020579\|Ga0210407_10603145	Not Available	856	Open in IMG/M
3300020581\|Ga0210399_11471804	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300020582\|Ga0210395_10078615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2430	Open in IMG/M
3300020582\|Ga0210395_10249784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1333	Open in IMG/M
3300020583\|Ga0210401_11129713	Not Available	642	Open in IMG/M
3300021168\|Ga0210406_10010336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9202	Open in IMG/M
3300021168\|Ga0210406_10756441	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300021168\|Ga0210406_11153730	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300021171\|Ga0210405_10170674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1723	Open in IMG/M
3300021171\|Ga0210405_10191244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1622	Open in IMG/M
3300021171\|Ga0210405_10452923	Not Available	1008	Open in IMG/M
3300021171\|Ga0210405_11322738	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300021180\|Ga0210396_10337886	Not Available	1329	Open in IMG/M
3300021180\|Ga0210396_11259307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	617	Open in IMG/M
3300021181\|Ga0210388_10396817	Not Available	1213	Open in IMG/M
3300021401\|Ga0210393_10044684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3479	Open in IMG/M
3300021401\|Ga0210393_10285616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	1340	Open in IMG/M
3300021401\|Ga0210393_10414927	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300021403\|Ga0210397_10393900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1034	Open in IMG/M
3300021406\|Ga0210386_10123819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2141	Open in IMG/M
3300021407\|Ga0210383_11142037	Not Available	656	Open in IMG/M
3300021420\|Ga0210394_10527257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885	1039	Open in IMG/M
3300021475\|Ga0210392_10214981	Not Available	1348	Open in IMG/M
3300021475\|Ga0210392_11498042	Not Available	504	Open in IMG/M
3300021479\|Ga0210410_11354427	Not Available	604	Open in IMG/M
3300021479\|Ga0210410_11423460	Not Available	586	Open in IMG/M
3300022512\|Ga0242676_1027384	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300025898\|Ga0207692_10874520	Not Available	590	Open in IMG/M
3300025905\|Ga0207685_10043881	Not Available	1688	Open in IMG/M
3300025905\|Ga0207685_10114638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1174	Open in IMG/M
3300025905\|Ga0207685_10186080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	966	Open in IMG/M
3300025915\|Ga0207693_10022991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	4950	Open in IMG/M
3300025915\|Ga0207693_10259915	Not Available	1362	Open in IMG/M
3300025915\|Ga0207693_10565059	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300025916\|Ga0207663_10779642	Not Available	761	Open in IMG/M
3300025928\|Ga0207700_10635703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	951	Open in IMG/M
3300025928\|Ga0207700_10862479	Not Available	810	Open in IMG/M
3300025929\|Ga0207664_11650035	Not Available	563	Open in IMG/M
3300025929\|Ga0207664_11785351	Not Available	538	Open in IMG/M
3300025939\|Ga0207665_10670866	Not Available	814	Open in IMG/M
3300026984\|Ga0208732_1027164	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300027061\|Ga0209729_1002246	Not Available	1769	Open in IMG/M
3300027061\|Ga0209729_1056079	Not Available	503	Open in IMG/M
3300027548\|Ga0209523_1065787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	745	Open in IMG/M
3300027894\|Ga0209068_10811412	Not Available	551	Open in IMG/M
3300027911\|Ga0209698_10319274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1226	Open in IMG/M
3300029636\|Ga0222749_10676004	Not Available	565	Open in IMG/M
3300031057\|Ga0170834_102616213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1392	Open in IMG/M
3300031057\|Ga0170834_112172491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1091	Open in IMG/M
3300031231\|Ga0170824_108000291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	711	Open in IMG/M
3300031231\|Ga0170824_118490660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	577	Open in IMG/M
3300031231\|Ga0170824_124880980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	783	Open in IMG/M
3300031474\|Ga0170818_102360631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300031474\|Ga0170818_107811156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	636	Open in IMG/M
3300031715\|Ga0307476_10199849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1451	Open in IMG/M
3300031715\|Ga0307476_10331419	Not Available	1119	Open in IMG/M
3300031715\|Ga0307476_10334698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1113	Open in IMG/M
3300031715\|Ga0307476_10709639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300031718\|Ga0307474_10003216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11802	Open in IMG/M
3300031718\|Ga0307474_10016650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5331	Open in IMG/M
3300031718\|Ga0307474_10054090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2968	Open in IMG/M
3300031718\|Ga0307474_10287811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1264	Open in IMG/M
3300031718\|Ga0307474_10340293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1160	Open in IMG/M
3300031753\|Ga0307477_10330218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1050	Open in IMG/M
3300031754\|Ga0307475_10357934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1173	Open in IMG/M
3300031754\|Ga0307475_10872895	Not Available	711	Open in IMG/M
3300031754\|Ga0307475_11130391	Not Available	612	Open in IMG/M
3300031823\|Ga0307478_10218166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1540	Open in IMG/M
3300031823\|Ga0307478_10563432	Not Available	952	Open in IMG/M
3300031823\|Ga0307478_11323705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	599	Open in IMG/M
3300031962\|Ga0307479_10952844	Not Available	829	Open in IMG/M
3300031962\|Ga0307479_11122566	Not Available	752	Open in IMG/M
3300032174\|Ga0307470_10139350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1465	Open in IMG/M
3300032174\|Ga0307470_10443378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	931	Open in IMG/M
3300032180\|Ga0307471_102849272	Not Available	614	Open in IMG/M
3300032205\|Ga0307472_100556909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1002	Open in IMG/M
3300032205\|Ga0307472_100563850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	997	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.74%
Aquatic	Environmental → Aquatic	9.40%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.74%
Sediment	Environmental → Aquatic → Sediment	7.69%
Freshwater	Environmental → Aquatic → Freshwater	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.83%
Loam	Environmental → Terrestrial → Soil → Loam	29.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	23.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.06%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	21.37%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	19.66%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100039652	3300003505	Forest Soil	MSQILKFPDRVSRRMPNNGTPKEAGARTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD*
Ga0062387_1010507442	3300004091	Bog Forest Soil	VSEILKFPDNVLRMSKNNTPEGRAAKAASGTKDRTVTKMPSRPVPVMTGVQWSEFIRLLGPDEQQAFMADVWKLINRYCQRIGGK*
Ga0070709_102969903	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	TPVLPQKRNNTTARPRRGRWAVCRATEYGLTMSQILKFPDSLSPRMPNDGTPKEATAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWELINRYCRSIGGD*
Ga0070709_107401061	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSETLKFPDSVRRRSNDGRPEEAAAGKKERTVTKMPSRHVPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINIYCRRIGGD*
Ga0070714_1000218852	3300005435	Agricultural Soil	MPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD*
Ga0070713_1017054081	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSLSPRMPNDGTPKEATAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRHCRSIGGD*
Ga0070710_100202171	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSLSRRTPKDGTPEEAVAGTEAKLPSLPIMTGDQWNEFIRLLTPEEQRAFMADVWKLI
Ga0070710_100264779	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDRVSRRMPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD*
Ga0070710_108847692	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSVSRRTPKDGTPEEAVAGTEAKMPNLPIMTGDHWNEFIRLLTPEERQTLMADVWKLINLYCRRLAATERRRTGQRTRLPISVS*
Ga0070717_110051171	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSVSRRTPKDGTPEEAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQTLMADVW
Ga0075023_1003487601	3300006041	Watersheds	MCQILKFPDSVRRRSNYGTPQAASGKRDRTATKMPGRHVPLMTGDQWNEFIRLLTPDEQQAFMADVWKLIDRYCQRIGGE*
Ga0075028_1006482552	3300006050	Watersheds	VSEILKFPDNVLRMSKNNTPEGRAAKAAFGAKDRTVAKMPSRPVPVMTGVQWSEFIRLLRPDEQQAFMADVWKLINRYCQRIGGE*
Ga0075028_1007897851	3300006050	Watersheds	VPGRRNKVFMSQILKFPDGARYWSNDGLPREAVTERKDRTVTKIPSRHVPVMTGDQWNEFIRLLTPDEQQAFMVDVWKIINLYCRRIAGELSE*
Ga0075017_1013417081	3300006059	Watersheds	AASGKKDRTVTRMPGRPIPVMTGDQWNEFIRLLTPDEQQAFMVDVWKIINLYCRRIAGELSE*
Ga0070715_100188302	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDRVSRRTPKDGAPEEAVAGAEAKIPSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINLYCRRIGGD*
Ga0070715_109516482	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSETLKFPDSVRRRSNDGRPEEAAAGKKERTVTKMPSRHVPVMTGDQWNEFIRLLTPEEQQAFMADVWKLI
Ga0075018_103097852	3300006172	Watersheds	MSQILKFPDRVSRRMPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVW*
Ga0070716_1002603372	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDRVSRRTPKDGAPEEAVAGAKAKMPSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINLCCRRIGGD*
Ga0070716_1008107812	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSISRRTPKDGTPEEAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQTLMADVWKLINLYCRRIGGD*
Ga0070716_1016232332	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSQVLIFPDRVSRRTLNDGTPKEAAAGTKDGTIAKMPRRHVPVMTGDQWNEFIRLLTPEEQRAFMADVWKLINIHCRRIGGD*
Ga0075014_1001911442	3300006174	Watersheds	MSEVLKFPDRVWRRSNDGTSETAASGKKDRTVTKMPSRPVPVMTGVQWSEFIRLLRPDEQQAFMADVWKLINHYCQRIGGE*
Ga0070712_1003508152	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LTMSQILKFPDIVSRRMPNDGTPKEATAETKDGTIARMPRRHVLVMTGDQWSEFIRLLTPDEQQAFMADVWKLINCHCMRIGGD*
Ga0070712_1004471951	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNQILKFPDRVSRRTPNDGTPKEAAAGTKDGTIAKMPRRHVPVMTGDQWNEFIRLLTPEEQRAFMADVWKLINIHCRRIGGD*
Ga0075021_108090322	3300006354	Watersheds	RGLCAGPPNYRLIMSQILKFPDSVRRRSNDGTSEAAASGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTGVWNLIEGYCHRIGGD*
Ga0150983_156007732	3300011120	Forest Soil	MSEVLKFPDRVRRRSNDGAPEAAASGKKHRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD*
Ga0164303_106265072	3300012957	Soil	MSQILKFPDSISRRTPKDGTQAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQMLMADVWKLINLYCRRIGGD*
Ga0164301_116368801	3300012960	Soil	MSQILKFPDRVSWRTPNDGTPEKAIAGTDAKMPSLPAMTGDQWNEFIRLLTPEEQRACMADVWKLINIYCRRIGGD*
Ga0164302_102249561	3300012961	Soil	MSQILKFPDSISRRTPKDGTRAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQMLMADVWKLINLYCRRIGGD*
Ga0164304_105477921	3300012986	Soil	MSQILKFPDRVSRRMPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWSEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD*
Ga0164304_106508731	3300012986	Soil	MLPRGLCAEPPNYGLTMSQILKFPDSLSRRTPKDGTPEEAVAGTEAKLPSLPIMTGDQWNEFIRLLTPEEQRAFMADVWKLITSTAGALA
Ga0164305_110244802	3300012989	Soil	MSQILKFPDSLSQRMPNDGTPKEASAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRYCRSIGGD*
Ga0157374_128383642	3300013296	Miscanthus Rhizosphere	MSQILKFPGCASGRRLKDGAPARTEANVPHGLPVMRGDQWDEFIRLLRPEKQRAFMADVWKLINIYCRRIGGE*
Ga0187777_109681531	3300017974	Tropical Peatland	MSQILKFPDSASRQRPKDGSLVEAVAAAVIEMPSRHVPVMTGKQWEAFIRLLTPDEQQAFMADLFKVLARHLGRIGAD
Ga0210407_1000261127	3300020579	Soil	MSQVLKFPDRVSRRTPNDGTPKEAAAGTKDGTIAKTPRRHVPVMTGDQWNEFIRLLTPEEQRAFMADVWKLINIHCRSIGGD
Ga0210407_100129477	3300020579	Soil	VVCRAAEYGLTMSQILKFPDSLSQRMPNNGTPKETTAETVTKTPSPHVPVMTGDEWNEFIRLLTPDEQQAFMADVWKLINRYCRSIGGD
Ga0210407_105118972	3300020579	Soil	WLGSARFRRGLCAEPPNYGLTMSQILKFPNGAARRTPKDGAPEEAIAGTEAKMPSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINIYCRRIGGD
Ga0210407_106031452	3300020579	Soil	VGEILKFPDNVLRMSKNNTPEGRASKAAFGAKDRTVAKMPSRPVPVMTGVQWSEFIRLLRPDEQQAFMADVWELINRYC
Ga0210399_114718041	3300020581	Soil	RRSNDGTSEAAASGKKDRTVTKMPSARVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD
Ga0210395_100786151	3300020582	Soil	MSEVLKFPDRVRRRSNDSASETAASGKKDRTVTKMPSPRVPVMTGDQWSEFIRLLTLDAQQAFMADVWKLINRYCQRIDGE
Ga0210395_102497842	3300020582	Soil	MSKVLKFPDRVRRRSNDGTSEAAASGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD
Ga0210395_107833092	3300020582	Soil	VSEILKFPDNVLRMSKNNTPEGRAAKAASGTKDRTGARMPSRPVPVMTGVQWSEFIRLLRPDEQQAFMADVWELINRYCRRIGGN
Ga0210401_111297131	3300020583	Soil	MSQILKFPDSVSRRTPKDGTPEEAVAGAKAKMPSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLI
Ga0210406_100103365	3300021168	Soil	VCRAAEYGLTMSQILKFPDSLSQRMPNNGTPKETTAETVTKTPSPHVPVMTGDEWNEFIRLLTPDEQQAFMADVWKLINRYCRSIGGD
Ga0210406_107564412	3300021168	Soil	MSQILKFPDGVRRRSNDGTSEAAASGKKDRTVTKMPSARVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRLGGD
Ga0210406_111537301	3300021168	Soil	MSQILKFPDSVRRRSNDGTSEAAASGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD
Ga0210405_101706745	3300021171	Soil	SRSNDGASEAAASGKKDRTVTKMPSPRVPVMTGDQWSEFIRLLTLDAQQAFMADVWKLINRYCQRIDGE
Ga0210405_101912441	3300021171	Soil	MSQILKFPDSVSRRTPKDGAPEEAVARTEAKMPSLPIMTGDQWNEFIRLLTPEEQQAFMADVWKLINLHCRRIGGWSK
Ga0210405_104529234	3300021171	Soil	MISEAGMSQILKFPDSIRRRSNDGPPREAAYGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWN
Ga0210405_113227381	3300021171	Soil	ARTPKDGTPEEAVAGTEAKMPGLPIMTGDHWNEFIRLLTPEERQMLMADVWKLINLYCRRIGGD
Ga0210396_103378862	3300021180	Soil	MSQVLKFPDRVSRRTPNDGTPKEAAAGTKDGTIAKTPRRHVPVMTGDQWNEFIRLLTPEEQRAFMADVWKLINIPCRSIGGD
Ga0210396_112593072	3300021180	Soil	WRLTMSQILKFPDSFSRRTPRDCTREVTVAGMEAKMPSLPAMTGDQWNEFIRLLTPEEQQAFMADVWKLINLHCRRIGGWSK
Ga0210388_103968171	3300021181	Soil	MSQILKFPDRVSRRMPNNGTPKEAGARTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADGWKLIGCHCRLIGGD
Ga0210393_100446848	3300021401	Soil	MSEVLKFPDRIRRRSNDGTSEAPASRKNRTVTKMPSPRVPVMTGDQWREFIRLLAPDERQAFMTDV
Ga0210393_102856161	3300021401	Soil	VVCRAAEYGLTMSQILKFPDSLSQRMPNDGTPKKATAGTVAKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRYCRTIGGN
Ga0210393_104149272	3300021401	Soil	MISEAGMSQILKFPDSIRRRSNDGPPREAAYGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD
Ga0210397_102463683	3300021403	Soil	AAASGKKDRTVTKMPSARVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRLGGD
Ga0210397_103939001	3300021403	Soil	RGLCAGPPNYRLIMSEVLKFPDRVRRRSNDSASETAASGKKDRTVTKMPSPRVPVMTGDQWSEFIRLLTLDAQQAFMADVWKLINRYCQRIDGE
Ga0210386_101238194	3300021406	Soil	MSQILKFPDSLSQRMPNNGTPKETTAETVTKTPSPHVPVMTGDEWNEFIRLLTPDEQQAFMADVWKLINRYCRSIGGD
Ga0210383_105601011	3300021407	Soil	NNTPEGRASKAAFGAKDRTVAKMPSRPVPVMTGVQWSEFIRLLRPDEQQAFMADVWKLINRYCQRIGGE
Ga0210383_111420372	3300021407	Soil	LIMGQILKFPDRVRRLSNDGTPQAASGKKDRTVAKMPNRPVPVMTGVQWGEFIRLLRPDEQQAVMADVWKLIN
Ga0210394_105272571	3300021420	Soil	HATSADHWLGPAHLRRGLCAGPPNYRLIMSQILKFPDSVRRRSNDGTSEAAASGKKDRTVAKMPGRHVPVMTGDQWREFIRLLTPDEQQAFMADVWKLINRYCERIGGE
Ga0210392_102149814	3300021475	Soil	MISEAGMSQILKFPDSIRRRSNDGPPREAAYGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWKLINRYCRHIG
Ga0210392_114980421	3300021475	Soil	MSEVLKFPDRVRRRSNDGTSEAAASGKNRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD
Ga0210410_113544271	3300021479	Soil	MSQILKFPDSVRRRSNEGTSEAAASGKKDRTVTKMPGRPIPVMTGDQWNEFIRLLMPDEQQAFMTDV
Ga0210410_114234601	3300021479	Soil	ATSADHWLGPAHLRRGLCAGPPNYRLIMSEVLKFPDRVRRRSNDGAPEAAASGKKHRTVTKMPSPRVPVMTGDQWRAFIRLLTPDEQQAFMTDVWNLIEGYSQRIGGE
Ga0242676_10273841	3300022512	Soil	LSQRMPNDGSPKEASAETVTKTPSPHVPVMTGDQWNEFIRLLTPDEQQAFMTDVWNLIEGYCHRIGGD
Ga0207692_108745201	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PNYGLTMSQILKFPNGASRRTPKDGAPEEAIAGTEAKMPSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINIYCRRIGGD
Ga0207685_100438811	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSVSRRTPKDGTPEEAVAGTEAKMPNLPIMTGDHWNEFIRLLTPEERQTLMADVWKLINLYC
Ga0207685_101146383	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDRVSRRMPNNGTPKEAGARTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADV
Ga0207685_101860803	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSRILKFPDSLSQRMPNDGTPKEASAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWELINRYCRSIGGD
Ga0207693_100229911	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VCRAAEYGLTMSQILKFPDNLSQRMPNDGMPKEATAETVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWELINRYCRSIGGD
Ga0207693_102599152	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VSQILKFPDIVSRRMPNDGTPKEATAETKDGTIARMPRRHVLVMTGDQWSEFIRLLILTPDEQQAFMADVWKLINCHCMRIGGD
Ga0207693_105650592	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDRVSRRTPNDGTPKEAAAGTKDGTIAKMPRGHVPVMTGDQWNEFIRLLTPEEQRAFMADVWKLINIHCRRIGGD
Ga0207663_107796421	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPNGASRRTPKDGAPEEAIAGTEAKMPSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINIYCRRIGGD
Ga0207700_106357032	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VCRAAEYGLTMSQILKFPDSLSQRMPNDGTPKKATAETVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLI
Ga0207700_108624791	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSLSRRTPKDGTPEEAVAGTEAKLPSLPIMTGDQWNEFIRLLTPEEQRAFMADVWKLINIYCRRIGGD
Ga0207664_116500352	3300025929	Agricultural Soil	DRVSRRMPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD
Ga0207664_117853511	3300025929	Agricultural Soil	VPSRRIGVSMSQVLKFPDRVSWRTLNDGTPKEAAAGTKDGTIRHVPVMTGDQWNEFIRLLTPEEQRAFMADVWKLINIYCRRIGGD
Ga0207665_106708661	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSQILKFPDSLSRRTPKDGTPEEAVAGTEAKLPSLPIMTGDQWNEFIRLLTPEEQRAFMADVWKLINIHCRRIGGD
Ga0208732_10271642	3300026984	Forest Soil	WLGSAHLRRGLCAGPPNYRLIMSEVLKFPDRIRRRSNDGTSEAPASRKNRTVTKMPSPRVPVMTGDQWREFIRLLAPDERQAFMTDV
Ga0209729_10022461	3300027061	Forest Soil	LARHGLIRASLHMFPDIVSRRMPNDGTPKEATAETKNGTIARMPRRHVLVMTGDQWNEFIRLLTPDGQQAFMADVWKLIGCHCRLIGGD
Ga0209729_10560791	3300027061	Forest Soil	VCRAAAPWADMGQIFKFPDSVSRRTPKDGTPQASIAGTEAKMSSLPVMTGDQWNEFIRLLTPEEQQAFMADVWKLINLHCRRIGGWSK
Ga0209523_10657873	3300027548	Forest Soil	TMSQILKFPDNVSRRTLKDGTPDEAVAGTEAKMPGLPIMTGDQWNEFIRLLTPEERQAFMADVWKLINLYCRRIGGWSK
Ga0209448_101017881	3300027783	Bog Forest Soil	VSEILKFPDNVLRMSKNNTPEGRAAKAASGTKDRTVTKMPSRPVPVMTGVQWSEFIRLLGPDEQQAFMADVWKLINRYCQRIGGK
Ga0209068_108114121	3300027894	Watersheds	MCQILKFPDSVRRRSNYGTPQAASGKRDRTATKMPGRHVPLMTGDQWNEFIRLLTPDEQQAFMADVWKLIDRYCQRIGGE
Ga0209698_103192741	3300027911	Watersheds	MSQILKFPDSVRRRSNDGTPQEAATGRKDRTVTKMPGRHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRYCRTIGGN
Ga0222749_106760041	3300029636	Soil	MSEVLKFPDRVRRRSNDGAPEAAASGKKHRTVTKMPSPRVPVMTGDQWSEFIRLLTLDAQQAFMADVWKLINRYCQRI
Ga0170834_1026162131	3300031057	Forest Soil	MSQILKFPDRVPRRMPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD
Ga0170834_1121724912	3300031057	Forest Soil	MSQILKFPDSLSQRMPNDGTPKEATAETVTKTPSLNVPVMTGDQWNEFIRLLTPDEQQAFMADVWELINRYCRSIGGD
Ga0170824_1080002911	3300031231	Forest Soil	RACSIEWLFPSGCRPRAAELWADMSQILKFPDSVSRRTPKDGTPEEAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQTLMADVWKLINLYCRRIGGD
Ga0170824_1184906602	3300031231	Forest Soil	MSQILEFPNGASRRTPKDGAPEEAIAGTEAKMPSLPIMTGDQWNEFIRLLTPEERQAFMADVWKLINLCCRRDWRVE
Ga0170824_1248809802	3300031231	Forest Soil	MSQVLKFPDSLSQRMPNDGTHKEASAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWELINRYCRSIGGD
Ga0170818_1023606311	3300031474	Forest Soil	GQILKFPDSFSRRTPKDGTPGEAVAGTEAKMPSLPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINLYCRRIGGD
Ga0170818_1078111561	3300031474	Forest Soil	ELWADMSQILKFPDSVSRRTPKDGTPEEAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQTLMADVWKLINLYCRRIGGD
Ga0307476_101998494	3300031715	Hardwood Forest Soil	RTAEYGLTMSQILKFPDSLSQRMPNDGTPKEASAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRHCRSIGGD
Ga0307476_103314192	3300031715	Hardwood Forest Soil	MSQILKFPSVSRRTPKDGTPEEAVPGTEAKMPSLPVMTGDQWSEFLRLLTPEEQQAFMGDVWKLINIYCLRIGGD
Ga0307476_103346982	3300031715	Hardwood Forest Soil	VPGRRIRLIMSEVLKFPDGVRRRSNDGASEAAASRKKDRTVTNVLRLRVPVMTGDQWREFIRLLTPDEQQAFMADVWNLIEGYSQRIGGE
Ga0307476_107096392	3300031715	Hardwood Forest Soil	MSQILKFPDSFSRRTPRDCTREVTVAGMEAKMPSLPAMTGDQWNEFIRLLTPEEQQAFMADVWKLIN
Ga0307474_1000321616	3300031718	Hardwood Forest Soil	MSQILKFPDSVSRRTPKDGAPEEAVARTEAKMPSLPIMTGDQWNEFIRLLTPEEQQAFMADVWKLINLCCRRIGGD
Ga0307474_100166507	3300031718	Hardwood Forest Soil	MSQILKFPDSFSRRTPRDCTREVTVAGMEAKMPSLPAMTGDQWNEFIRLLTPEEQQAFMADVWKLINLHCRRIGGWSK
Ga0307474_100540904	3300031718	Hardwood Forest Soil	MSQILKFPGGVRRPSNDHAPETAAPTKADRTVTKMPSRQVPVMTGDQWSEFIRLLTRGEQQAFMADVWKLINRYCRRIGGD
Ga0307474_102878112	3300031718	Hardwood Forest Soil	VVCRAAEYGLTMSQILKFPDSLSQRMPNDGTPKEASAGTVTKMPSPHVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRHCRSIGGD
Ga0307474_103402932	3300031718	Hardwood Forest Soil	MSQILKFPDGVSRRTPKVGTPKKAAAGTVTKMSSRYVPVLTGDQWNEFIRLLTPDEQQAFLDDVWKLIDRYCQRMGGG
Ga0307477_103302181	3300031753	Hardwood Forest Soil	MSQILKFPDSFSRRTPRDCTREVTVAGMEAKMPSLPAMTGDQWNEFIRLLTPEEQQAFMADVWKLINLYCRRIGGD
Ga0307475_103579342	3300031754	Hardwood Forest Soil	MSQILKFPDSVSRRTPKDGTPEEAVAGTEAKMPGLPIMTGDHWNEFIRLLTPEERQMLMADVWKLINLYCRRKPGD
Ga0307475_108728951	3300031754	Hardwood Forest Soil	AFGGRWCAEPPNHGLTMSQILKFPDSVSRRTPKDGAPEEAVARTEAKMPSLPIMTGDQWNEFIRLLTPEEQQAFMADVWKLINLCCRRIGGD
Ga0307475_111303911	3300031754	Hardwood Forest Soil	ARHIFRRGQCAGPPNYGLTMSQILTFPDRVSRRTPNEGTPKEAAAGTKDGTIAKMPRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD
Ga0307478_102181662	3300031823	Hardwood Forest Soil	MSEVLKFPDRVRRRSNDGAPEAAASGKKHRTVTKMPSPRVPVMTGDQWREFIRLLTPDEQQAFMTDVWNLIEGYSQRIGGE
Ga0307478_105634321	3300031823	Hardwood Forest Soil	CRADENRKAFMSQILKFPGGVRRPSNDHAPETAAPTKADRTVTKMPSRQVPVMTGDQWSEFIRLLTRGEQQAFMADVWKLINRYCRRIGGD
Ga0307478_113237051	3300031823	Hardwood Forest Soil	VVCRAAEYGLTMSQILKFPDSLSQRMPNDGTPKEARAGTVTKMPSPQVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRHCRSIGGD
Ga0307479_109528441	3300031962	Hardwood Forest Soil	RRMPNNGTPKEAGARTKDGTITWMSRRHVLVMTGDQWNEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD
Ga0307479_111225661	3300031962	Hardwood Forest Soil	MSQILKFPDSISRRTPKDGTPEEAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQTLMADVWKLINLYCRRIGGD
Ga0307470_101393502	3300032174	Hardwood Forest Soil	VVCRAAEYGLTISQILKFADSLSQRMPNDGTPKEATAETVTKMPSPRVPVMTGDQWNEFIRLLTPDEQQAFMADVWKLINRHCRSIGGD
Ga0307470_104433781	3300032174	Hardwood Forest Soil	RTPKDGTPEEAVAGTEAKMPSLPIMTGDHWNEFIRLLTPEERQMLMADVWKLINLYCRRIGGD
Ga0307471_1028492721	3300032180	Hardwood Forest Soil	MLRRQVVCRAAEPWVDISQILKFPDSVSRRTPKDTPEEAVAGTEAKMPSPPVLTGDQWNEFIRLLAPVEQQAFMADVWKLINLSCR
Ga0307472_1005569093	3300032205	Hardwood Forest Soil	MSQILKFPDRVSRRMPNNGTPKEAGAGTKDGTITWMSRRHVLVMTGDQWSEFIRLLTPDEQQAFMADVWKLIGCHCRLIGGD
Ga0307472_1005638501	3300032205	Hardwood Forest Soil	MSQILKFPDSLSQRMPNDGTPKEASAGTVTKMPSPHVPVMTGDQWNEFIRILTPDEQQAFMADVWKLINRYCRSIGGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077881

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences