Metagenome / Metatranscriptome Family F078094

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078094
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	62 residues
Representative Sequence	MDSEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL
Number of Associated Samples	49
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.59 %
% of genes near scaffold ends (potentially truncated)	29.31 %
% of genes from short scaffolds (< 2000 bps)	89.66 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.759 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (37.931 % of family members)
Environment Ontology (ENVO)	Unclassified (75.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.586 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.44% β-sheet: 0.00% Coil/Unstructured: 50.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01339	CheB_methylest	31.90
PF08241	Methyltransf_11	12.07
PF03705	CheR_N	6.90
PF13596	PAS_10	3.45
PF13185	GAF_2	3.45
PF01042	Ribonuc_L-PSP	1.72
PF00535	Glycos_transf_2	0.86
PF01068	DNA_ligase_A_M	0.86
PF01739	CheR	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	63.79
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	15.52
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.72
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.86
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.86
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.76 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.72 %
Unclassified	root	N/A	17.24 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.28 %
Unclassified	root	N/A	17.24 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.86 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.24 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	8.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Bradyrhizobium sp. KB893862 SZCCT0404	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. KB893862 SZCCT0404	0.86 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0462200	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10046212	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10111340	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1015903	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1013752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1141	Open in IMG/M
3300004629\|Ga0008092_11259134	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300004633\|Ga0066395_10154457	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300004633\|Ga0066395_10324300	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300004633\|Ga0066395_10858185	Not Available	548	Open in IMG/M
3300005332\|Ga0066388_100304438	All Organisms → cellular organisms → Bacteria → Proteobacteria	2239	Open in IMG/M
3300005332\|Ga0066388_100308555	All Organisms → cellular organisms → Bacteria → Proteobacteria	2228	Open in IMG/M
3300005332\|Ga0066388_100455002	All Organisms → cellular organisms → Bacteria → Proteobacteria	1921	Open in IMG/M
3300005332\|Ga0066388_101094825	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300005332\|Ga0066388_101519682	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300005332\|Ga0066388_101639324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1134	Open in IMG/M
3300005332\|Ga0066388_101690865	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300005332\|Ga0066388_102203749	All Organisms → cellular organisms → Bacteria → Proteobacteria	994	Open in IMG/M
3300005332\|Ga0066388_102573168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	926	Open in IMG/M
3300005332\|Ga0066388_103651214	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005332\|Ga0066388_103761311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	774	Open in IMG/M
3300005332\|Ga0066388_104571462	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005332\|Ga0066388_104960574	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300005332\|Ga0066388_105693373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	630	Open in IMG/M
3300005332\|Ga0066388_106041212	Not Available	612	Open in IMG/M
3300005363\|Ga0008090_10059227	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005363\|Ga0008090_10071047	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005363\|Ga0008090_10071365	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300005363\|Ga0008090_10250353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1398	Open in IMG/M
3300005713\|Ga0066905_100433972	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300005713\|Ga0066905_100668571	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005713\|Ga0066905_100761689	Not Available	836	Open in IMG/M
3300005713\|Ga0066905_100944133	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005713\|Ga0066905_101014055	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300005713\|Ga0066905_101223324	Not Available	672	Open in IMG/M
3300005713\|Ga0066905_101308183	Not Available	652	Open in IMG/M
3300005713\|Ga0066905_102244083	Not Available	509	Open in IMG/M
3300005764\|Ga0066903_100872589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1623	Open in IMG/M
3300005764\|Ga0066903_101722373	Not Available	1194	Open in IMG/M
3300005764\|Ga0066903_103681839	Not Available	825	Open in IMG/M
3300005764\|Ga0066903_104586049	Not Available	736	Open in IMG/M
3300005764\|Ga0066903_105051699	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300005764\|Ga0066903_107462584	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005764\|Ga0066903_108066470	Not Available	540	Open in IMG/M
3300005937\|Ga0081455_10479920	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300009792\|Ga0126374_10070182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1870	Open in IMG/M
3300009792\|Ga0126374_10319757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1050	Open in IMG/M
3300009792\|Ga0126374_10635866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	793	Open in IMG/M
3300010043\|Ga0126380_10938799	Not Available	722	Open in IMG/M
3300010043\|Ga0126380_11493474	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300010046\|Ga0126384_10652509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	927	Open in IMG/M
3300010046\|Ga0126384_10810609	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300010046\|Ga0126384_10919816	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300010046\|Ga0126384_11122319	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300010048\|Ga0126373_10052873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3617	Open in IMG/M
3300010048\|Ga0126373_10176491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2052	Open in IMG/M
3300010048\|Ga0126373_10891067	Not Available	953	Open in IMG/M
3300010048\|Ga0126373_11150862	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010358\|Ga0126370_11473115	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300010358\|Ga0126370_12585451	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010359\|Ga0126376_10470457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1154	Open in IMG/M
3300010359\|Ga0126376_10479012	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300010359\|Ga0126376_12178422	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300010360\|Ga0126372_10172579	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300010360\|Ga0126372_11052014	Not Available	829	Open in IMG/M
3300010360\|Ga0126372_11453653	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300010360\|Ga0126372_11503454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	709	Open in IMG/M
3300010360\|Ga0126372_11839429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	649	Open in IMG/M
3300010361\|Ga0126378_10432041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300010361\|Ga0126378_11746281	Not Available	707	Open in IMG/M
3300010362\|Ga0126377_11262633	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300010362\|Ga0126377_12444045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	598	Open in IMG/M
3300010366\|Ga0126379_11368792	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300010376\|Ga0126381_104791520	Not Available	520	Open in IMG/M
3300010398\|Ga0126383_10791402	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300010398\|Ga0126383_13129277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	540	Open in IMG/M
3300012204\|Ga0137374_11131995	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012948\|Ga0126375_10212161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	1281	Open in IMG/M
3300012948\|Ga0126375_10590890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	846	Open in IMG/M
3300012948\|Ga0126375_11568445	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012948\|Ga0126375_12057668	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012971\|Ga0126369_11638384	Not Available	733	Open in IMG/M
3300012971\|Ga0126369_12190319	Not Available	640	Open in IMG/M
3300012971\|Ga0126369_13637323	Not Available	505	Open in IMG/M
3300016319\|Ga0182033_11570929	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300021444\|Ga0213878_10152192	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300021560\|Ga0126371_10318378	Not Available	1686	Open in IMG/M
3300021560\|Ga0126371_10723647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. KB893862 SZCCT0404	1143	Open in IMG/M
3300021560\|Ga0126371_10876368	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300021560\|Ga0126371_11024624	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300021560\|Ga0126371_12359612	Not Available	643	Open in IMG/M
3300021560\|Ga0126371_12370232	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300027654\|Ga0209799_1008168	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300027874\|Ga0209465_10146946	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300031543\|Ga0318516_10002516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7625	Open in IMG/M
3300031543\|Ga0318516_10011185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4342	Open in IMG/M
3300031543\|Ga0318516_10140440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1384	Open in IMG/M
3300031544\|Ga0318534_10346411	All Organisms → cellular organisms → Bacteria → Proteobacteria	855	Open in IMG/M
3300031546\|Ga0318538_10070345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1757	Open in IMG/M
3300031564\|Ga0318573_10095113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1523	Open in IMG/M
3300031668\|Ga0318542_10707561	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031713\|Ga0318496_10025987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2930	Open in IMG/M
3300031723\|Ga0318493_10343212	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300031747\|Ga0318502_10002181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7552	Open in IMG/M
3300031747\|Ga0318502_10004003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6066	Open in IMG/M
3300031747\|Ga0318502_11025894	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031763\|Ga0318537_10169018	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031780\|Ga0318508_1215529	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300031799\|Ga0318565_10385731	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300031859\|Ga0318527_10051255	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300031894\|Ga0318522_10011473	All Organisms → cellular organisms → Bacteria	2685	Open in IMG/M
3300031942\|Ga0310916_10280389	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300031954\|Ga0306926_11787834	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300031959\|Ga0318530_10069111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1364	Open in IMG/M
3300032067\|Ga0318524_10131401	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300032067\|Ga0318524_10257066	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300033289\|Ga0310914_10007554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7866	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	0.86%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.28%
Plants	Host-Associated → Plants	0.86%
Solid Waste	Engineered → Solid Waste	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Grass	Engineered → Solid Waste → Grass	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.10%
Loam	Environmental → Terrestrial → Soil → Loam	30.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Composting	Engineered → Solid Waste → Grass → Composting	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.14%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.86%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	37.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	30.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_04622002	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MDVEHRKLVNKTRELIETTRCEISQLREEIELARNTVDRSQRILSRAKPPANRRPKRAKSL*
AF_2010_repII_A1DRAFT_100462122	3300000597	Forest Soil	PSGANPMDSEHRDLVTKTRALIEITRREISQLREEIDSARTTVDRTQRLLSRTEPSTNRIAKPAKAL*
AF_2010_repII_A1DRAFT_101113401	3300000597	Forest Soil	MDSEHHSLMIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVRRKARPRR*
AP72_2010_repI_A10DRAFT_10159032	3300000651	Forest Soil	MDFEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRXARPAKAL
AP72_2010_repI_A100DRAFT_10137522	3300000837	Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTRRIASVRRKARPRQ*
Ga0008092_112591341	3300004629	Tropical Rainforest Soil	MDSEHRDLVTKTRALIETTRREISQLREEIESARTTVDRAQRFLSRTEPSTRRIARPRQEPRAGQ*
Ga0066395_101544571	3300004633	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL*
Ga0066395_103243001	3300004633	Tropical Forest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPRQARVRRVARARQ*
Ga0066395_108581851	3300004633	Tropical Forest Soil	MDSEHRDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0066388_1003044382	3300005332	Tropical Forest Soil	MNSEHRELLFKTRALIERTRHEISQLREEIDSARTTIDRAQRLLSRTEPSTNRIARPAKAL*
Ga0066388_1003085552	3300005332	Tropical Forest Soil	MDSEHRNLMTKARALIETSRREISELREEIESARNTVDRSQQLLLRTEPSLRRSPKPAKAL*
Ga0066388_1004550022	3300005332	Tropical Forest Soil	MDSAHRELLFKTRAMIETTRREISQLRDEIQSARDTIDQTQRLLSRSKPSTRRIARLRKDARAGQ*
Ga0066388_1010948252	3300005332	Tropical Forest Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKAL*
Ga0066388_1015196822	3300005332	Tropical Forest Soil	VDGADPMDSKHREVVAKTRALIETTHREISQLREEIESAQDTVDRAQRLLSRTEPSADRMARPAKAL*
Ga0066388_1016393242	3300005332	Tropical Forest Soil	MDAEQQARVIKTRALIETTRHEISQLREEIGLAWNTVNQSQKLLSRTEPSTQRLPKPSKPL*
Ga0066388_1016908651	3300005332	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLQEEIESARATVDQTQRLLSRTEPSNRIARPAKAL
Ga0066388_1022037492	3300005332	Tropical Forest Soil	MDSEHRDRMAKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPRQARVRRVARARQ*
Ga0066388_1025731682	3300005332	Tropical Forest Soil	MTPLKPSGASPMDSKHRDLMIQTRALIETTRREISQLREEIESARNTVDRAQRVLSRTEPSTNRIAGPAKAL*
Ga0066388_1036512141	3300005332	Tropical Forest Soil	MDSDHRDLMTKTQALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIVRRRQEPRAGQ*
Ga0066388_1037613111	3300005332	Tropical Forest Soil	MMLLEYLGSRLMDSEHQTLLIQTRALIETTRHEISQLREEIQSTWNTIDRSQRLLSRTEPSTRRIARKARARQ*
Ga0066388_1045714622	3300005332	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNLITRPAKAL
Ga0066388_1049605742	3300005332	Tropical Forest Soil	MDSEHRDLMTKARALIETTRREISQLREEIESARNTVDRSQRLLSRTEPS
Ga0066388_1056933732	3300005332	Tropical Forest Soil	LIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVQRKARPRQ*
Ga0066388_1060412121	3300005332	Tropical Forest Soil	MDGADPMDPKHRELVTKTRALIKTTRREISQLQEEIESARATVDQAQRLLSRTEPTMRRMARPAKSL*
Ga0008090_100592272	3300005363	Tropical Rainforest Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARATVDRAQRLLSRTEPSTNRIAKPAKAL*
Ga0008090_100710472	3300005363	Tropical Rainforest Soil	MDSEHHSLMIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRIEPSTRRIASARRKARPRQ*
Ga0008090_100713651	3300005363	Tropical Rainforest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPREARVRRVARARQ*
Ga0008090_102503532	3300005363	Tropical Rainforest Soil	MDSEHRDLVTKTRALIEITRREISQLREEIDSARTTVDRTQRLLSRTEPSTNRIAKPAKAL*
Ga0066905_1004339722	3300005713	Tropical Forest Soil	MGADPLDAKHRELVTKTRALIETTHREISQLREEIESTQNIVDQAQRLLSRTEPSADRIARPAKAL*
Ga0066905_1006685712	3300005713	Tropical Forest Soil	MDSAHHDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQE
Ga0066905_1007616892	3300005713	Tropical Forest Soil	MDSEHRNLMTKARALIETSRREISELREEIESARNTVDRSQQLLSRTEPSLRRSPKPAKAL*
Ga0066905_1009441332	3300005713	Tropical Forest Soil	MDSEHHSLMIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIA
Ga0066905_1010140551	3300005713	Tropical Forest Soil	MDSEHRDLMTKARALIETTRREISELREEIESARNTVDRSQRLLSRTEPSTNRIPRPAKAL*
Ga0066905_1012233241	3300005713	Tropical Forest Soil	MDSQHRDLMTKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPATRRIARFRKEPRAGQ*
Ga0066905_1013081831	3300005713	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRSEISQLREEIQSAWTTIDRSQRLLSRTARGASRIARFRKEPRARQ*
Ga0066905_1022440831	3300005713	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL*
Ga0066903_1008725892	3300005764	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLHEEIESARATVDQTQRLLSRTEPSNRTARPAKAL
Ga0066903_1017223733	3300005764	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLHEEIQSAWNTIDQSQRLLSRTEPSTRHIARPWQEPRAGQ*
Ga0066903_1036818391	3300005764	Tropical Forest Soil	MEADLMDSEHRDLVIKSRELIETTRHEISQLREEIELAWKTVDQSQRLLSRVQPFTQRIPKSSKAL*
Ga0066903_1045860492	3300005764	Tropical Forest Soil	MDSRQRELVTKTRALIETTRREVSQLHDEIESARDTIDQTQRLLSRDPSRRRIARVRREARAGRY*
Ga0066903_1050516992	3300005764	Tropical Forest Soil	YRDAARMTWERILVDGADPMDSKHREVVAKTRALIETTHREISQLREEIESAQDTVDRAQRLLSRTEPSADRMARPAKAL*
Ga0066903_1074625842	3300005764	Tropical Forest Soil	MDTMHRKVVTKTRALIKTTRREISQLQEEIESARATVNQAQRLLSRTEPTMRRMARPAKAL*
Ga0066903_1080664701	3300005764	Tropical Forest Soil	MDSGNRKLVTKTRALIETTRREISQLRDEIESARDTIDRTQRLLSRTQAPGRRIARVRRVARAGR*
Ga0081455_104799201	3300005937	Tabebuia Heterophylla Rhizosphere	SNEMGADLMDGADPMDSKHREVVTKTRALIETTHREISQLREEIESTQNMVDQAQRLLSRTEPTMRRMARPAKAL*
Ga0126374_100701822	3300009792	Tropical Forest Soil	MDSEHLDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0126374_103197571	3300009792	Tropical Forest Soil	MDSEHRDLVIKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0126374_106358661	3300009792	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPSTPRIASVRREARARQ*
Ga0126380_109387992	3300010043	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRI
Ga0126380_114934741	3300010043	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPST
Ga0126384_106525092	3300010046	Tropical Forest Soil	MDSEHHALLIKTRALIETTRHEISQLREEIQSAWNTIDRSQRLLSRTEPSAHHIAEPRQEPRGGQ*
Ga0126384_108106092	3300010046	Tropical Forest Soil	MDSRQRELVTKTRALIETTRREVSQLHDEIESARDTIDRTQRLLSRDPSMRRIARLRREARAGR*
Ga0126384_109198161	3300010046	Tropical Forest Soil	MDSQHRDLVTKTRALIETTRREILQLREEIDSARTTIDRAQRLLSRTEPSTNRIARPAKAL*
Ga0126384_111223191	3300010046	Tropical Forest Soil	MDSAHRELLFKTRAMIETTRREISQLRDEIQSARDTIDQTQRLLSRSKPSTRRIARLRKKEARAGQ*
Ga0126373_100528732	3300010048	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRRDILQLREEIESARTTVDRAQRVLSRTEPSAEPVPKLAKAL*
Ga0126373_101764915	3300010048	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLGEEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0126373_108910671	3300010048	Tropical Forest Soil	SEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL*
Ga0126373_111508622	3300010048	Tropical Forest Soil	MDSEHRDLVTKTRALIEITRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKAL*
Ga0126370_114731151	3300010358	Tropical Forest Soil	MDSKHREVVAKTRALIETTHREISQLREEIESAQDTVDRAQRLLSRTEPSADRMARPAKAL*
Ga0126370_125854512	3300010358	Tropical Forest Soil	MDSQHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKAL*
Ga0126376_104704573	3300010359	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVRREARARQ*
Ga0126376_104790122	3300010359	Tropical Forest Soil	MDSKHREVVTKTRALIETTHREISQLREEIESTQNMVDQAQRLLSRTEPSADRIARPAKAL*
Ga0126376_121784221	3300010359	Tropical Forest Soil	MDSEHLDLMTKTRALIETTRREIWQLREEIQSAWNTIDRSQRLLSRTESAAHRIARRGQEPRAGQ*
Ga0126372_101725792	3300010360	Tropical Forest Soil	MGADPLDAKHRELVTKTRALIETTHREISQLREEIESTQNIVDQAQRLLSRTGPSADRIARPAKAL*
Ga0126372_110520141	3300010360	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL*
Ga0126372_114536532	3300010360	Tropical Forest Soil	MDSKHREVVTKTRALIETTHREISQLREEIESTQNMVGQAQRLLSRTEPSNRMARLAKAL
Ga0126372_115034542	3300010360	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTPRIASVQRKARPRQ*
Ga0126372_118394291	3300010360	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIAR
Ga0126378_104320413	3300010361	Tropical Forest Soil	MESEHRDLVTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0126378_117462811	3300010361	Tropical Forest Soil	RDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL*
Ga0126377_112626332	3300010362	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLHEEIESARATVDRAQRLLSRTEPSADRMARPAKAL*
Ga0126377_124440452	3300010362	Tropical Forest Soil	EHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQRLLSRTEPSTRRIASARRKARPRQ*
Ga0126379_113687921	3300010366	Tropical Forest Soil	MDSQHRDLVTKTRALIETTRREILQLREEIDSARTTVDCAQRLLSRTEPSTNRIARPAKAL*
Ga0126381_1047915201	3300010376	Tropical Forest Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEQSTNRIARPAKAL*
Ga0126383_107914022	3300010398	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIASAWNTIDRSQQLLSRTEPSTRRIARKARARQ*
Ga0126383_131292772	3300010398	Tropical Forest Soil	RGAVMDSEHHSLLIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPSTPRIASVRREARARQ*
Ga0137374_111319951	3300012204	Vadose Zone Soil	MDSEHRQLVTKTRALIERTRREISQLREEIESARTTVDRAHRLLSPTEPSTHRISRAKAL
Ga0126375_102121613	3300012948	Tropical Forest Soil	MDSEHRDLMTKARALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ*
Ga0126375_105908902	3300012948	Tropical Forest Soil	MDSEHHSLLIKTRALIETTRYEISQLREEIQSAWNTIDRSQRLLSRTEPSTRRIASVRRKARPRQ*
Ga0126375_115684451	3300012948	Tropical Forest Soil	MDTKHRDVVTKTRALIETTRREISQLHEEIESARATVDQTQRLLSRTEPSNRIARPAKAL
Ga0126375_120576682	3300012948	Tropical Forest Soil	MDSEHLDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRG
Ga0126369_116383842	3300012971	Tropical Forest Soil	PMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL*
Ga0126369_121903192	3300012971	Tropical Forest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPREARVRRVAR
Ga0126369_136373232	3300012971	Tropical Forest Soil	ALLFKTRALIETIRSEISQLRDEIQSAWNTIDRSQKLLSRTEPATRRIARRRKEPRAAQ*
Ga0182033_115709291	3300016319	Soil	SRASSMDSDHRDLVTKTRALIDTTRREILQLGADIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0213878_101521921	3300021444	Bulk Soil	MDPGHRDLVIRTRALIEITRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKA
Ga0126371_103183782	3300021560	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0126371_107236471	3300021560	Tropical Forest Soil	RRPLELSGADHMDSEHRDLMTKTRALIETTRREISQLREEIQSAWNTIDRSQRLLSRTESATHRIARRGQEPRAGQ
Ga0126371_108763682	3300021560	Tropical Forest Soil	MDSEHRDLVIKTRALIETTRREILELREEIESARTTVDRTQRLLSRTEPS
Ga0126371_110246241	3300021560	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIAKPAKA
Ga0126371_123596121	3300021560	Tropical Forest Soil	MNSEHRELLFKTRAMIETTRREISQLRDEIQSARDTIDQTQRLLSRSKPSTRRIARLRKDARAGQ
Ga0126371_123702321	3300021560	Tropical Forest Soil	MDSEHRDRMTKTWALIETTRREISQLREEIESARGTIDRTQRLLSRTQAPR
Ga0209799_10081682	3300027654	Tropical Forest Soil	MDTEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0209465_101469462	3300027874	Tropical Forest Soil	MDSEHRDLVTKTRALIETTRREILQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKA
Ga0318516_100025163	3300031543	Soil	MDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKA
Ga0318516_100111854	3300031543	Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLLRTEPSTNRIARPAKA
Ga0318516_101404402	3300031543	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVPAKTL
Ga0318534_103464112	3300031544	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTVDRAQRLLSRTEPSSRRIARRAKA
Ga0318538_100703451	3300031546	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTFDRAQRLLSRTEPSSRRIARRAKA
Ga0318573_100951133	3300031564	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSAQTTVDQSQRLLSRTEPSMRRVPAKTL
Ga0318542_107075611	3300031668	Soil	GLMDSKHRELLLKTRTLIERTRREISQMHGEIESARDTFDRAQRLLSRTEPSSRRIARRAKAL
Ga0318496_100259872	3300031713	Soil	MESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLSRTEPSTNRIARPAKA
Ga0318493_103432121	3300031723	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVPAKT
Ga0318502_100021817	3300031747	Soil	MESEHRDLVTKTRALIETTRREISQLREEIDLARTTVDRAQRLLSRTEPSTNRIARPAKA
Ga0318502_100040039	3300031747	Soil	PMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL
Ga0318502_110258942	3300031747	Soil	SPMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKAL
Ga0318537_101690182	3300031763	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTVDRAQRLLSRTEPS
Ga0318508_12155292	3300031780	Soil	TGANPMESEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLLRTEPSTNRIARPAKAL
Ga0318565_103857312	3300031799	Soil	LDRRRDSARTRDVSLMDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVPAKTL
Ga0318527_100512551	3300031859	Soil	MYSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKA
Ga0318522_100114732	3300031894	Soil	NPMESEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKAL
Ga0310916_102803891	3300031942	Soil	SMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRTQRLLSRTEPSNRIARPAKA
Ga0306926_117878342	3300031954	Soil	MDSEHRDLMTKTRALIEITRREISQLREEIESARNTVDQSQRLLSRTQAPRHHRAGE
Ga0318530_100691112	3300031959	Soil	MDSRQRELLFKTRALIETTRREISQLRDEIDSARTTVDQSQRLLSRTEPSMRRVSAKTL
Ga0318524_101314011	3300032067	Soil	VTPLEFRDVGLMDSKHRELLLKTRTLIERTRREISQMHGEIESARDTVDRAQRLLSRTEPSSRRIARRAKAL
Ga0318524_102570661	3300032067	Soil	SEHRDLVTKTRALIETTRREISQLREEIDSARTTVDRAQRLLLRTEPSTNRIARPAKAL
Ga0310914_100075548	3300033289	Soil	MDSKHRELLLKTRTLIERTRREISQMHGEIESARDTFDRAQRLLSRTEPSSRRI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078094

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences