NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F078099

Metagenome Family F078099

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078099
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 68 residues
Representative Sequence VTDHIVVGDRVLLDVSFRAAWARLGILARDGMLLRASEVAYGEGITGLVKVAGPAAGLTRLAGVRLDDLA
Number of Associated Samples 97
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 80.00 %
% of genes near scaffold ends (potentially truncated) 3.45 %
% of genes from short scaffolds (< 2000 bps) 3.45 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.552 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(35.345 % of family members)
Environment Ontology (ENVO) Unclassified
(46.552 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(42.241 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 43.88%    β-sheet: 0.00%    Coil/Unstructured: 56.12%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF16177ACAS_N 3.45
PF03949Malic_M 2.59
PF00696AA_kinase 1.72
PF06267DUF1028 1.72
PF11838ERAP1_C 1.72
PF11139SfLAP 1.72
PF02353CMAS 1.72
PF00543P-II 1.72
PF00196GerE 0.86
PF07411DUF1508 0.86
PF14659Phage_int_SAM_3 0.86
PF00011HSP20 0.86
PF00135COesterase 0.86
PF13466STAS_2 0.86
PF13177DNA_pol3_delta2 0.86
PF06974WS_DGAT_C 0.86
PF13189Cytidylate_kin2 0.86
PF00005ABC_tran 0.86
PF06305LapA_dom 0.86
PF00374NiFeSe_Hases 0.86
PF02113Peptidase_S13 0.86
PF00857Isochorismatase 0.86
PF10009DUF2252 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG0281Malic enzymeEnergy production and conversion [C] 2.59
COG0686Alanine dehydrogenase (includes sporulation protein SpoVN)Amino acid transport and metabolism [E] 2.59
COG0347Nitrogen regulatory protein PIISignal transduction mechanisms [T] 1.72
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 1.72
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 1.72
COG2230Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferasesLipid transport and metabolism [I] 1.72
COG3342Uncharacterized conserved protein, Ntn-hydrolase superfamilyGeneral function prediction only [R] 1.72
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.86
COG0374Ni,Fe-hydrogenase I large subunitEnergy production and conversion [C] 0.86
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.86
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.86
COG2027D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.86
COG2272Carboxylesterase type BLipid transport and metabolism [I] 0.86
COG3259Coenzyme F420-reducing hydrogenase, alpha subunitEnergy production and conversion [C] 0.86
COG3422Uncharacterized conserved protein YegP, UPF0339 familyFunction unknown [S] 0.86
COG3771Lipopolysaccharide assembly protein YciS/LapA, DUF1049 familyCell wall/membrane/envelope biogenesis [M] 0.86


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.55 %
All OrganismsrootAll Organisms3.45 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300027725|Ga0209178_1439242All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia501Open in IMG/M
3300031680|Ga0318574_10611789Not Available639Open in IMG/M
3300031910|Ga0306923_12486901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii511Open in IMG/M
3300032160|Ga0311301_10123169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4872Open in IMG/M
3300032897|Ga0335071_11601133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii596Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil35.34%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.21%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment8.62%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland8.62%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.76%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil6.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.17%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.45%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.72%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots1.72%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.86%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.86%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.86%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.86%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.86%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.86%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.86%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300020150Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MGEnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027662Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1023663713300000567Peatlands SoilVTAARLVPDLWTGAVTDHIVVGDRVLLDASFRAARGRLGILARDGMLLWASEVAYGEAITALVKVAGPAAGLTRLAGVC
JGI26341J46601_1004719713300003219Bog Forest SoilVTDHIVVGDRVLLDASFRGARARLGILARDGMLQWASEVAYGEGITGLVKMAGPAAGLTRLAGAHLDDLAET
Ga0062387_10005755563300004091Bog Forest SoilMTAARPVPGLWTGAVTDHIVVSDRVRLDASFRTARARLGMLATDGMLLRASEVAFGEGITGLVKAAGPAAGLTRLAGVRLDDLA
Ga0062389_10376038713300004092Bog Forest SoilVTDHIVVGDRVLLDVSFRAAWARLGILARDGMLLRASEVAYGEGITGLVKVAGPAAGLTRLAGVRLDDLA
Ga0066388_10462382223300005332Tropical Forest SoilMTDHIVVGDRVLLEAGFRAARARLELLAGDEMLVRASEAAYGTGITHLVAAAGPAAGLTRLAAA
Ga0070734_1004482643300005533Surface SoilVTDYIVFGDRVALRVGFHAVRTRLRILAEGGMLLRACETAYGEGAAALLELAGSAAGPTRLAEVCLEDLSETD
Ga0075017_10105158013300006059WatershedsVTDHIVVGDRVLLDISFRAAQARLRILASDGVLLPASEEVYGEGITGPMQLVGPAAGLTRLAGVG
Ga0116224_1054725913300009683Peatlands SoilMDQIVVGDRVLFDASFRAARTRLEILARDGILLRASELAYGESTAILIKAAGLAAG
Ga0126374_1025523423300009792Tropical Forest SoilVTDHIVVGDRVLLDVSFRAARARLEILASGETLLWASEVAYGEGITGLVKLA
Ga0116219_1040322223300009824Peatlands SoilVTDHIVVGDRVLLDASFRAARGRLGILARDGMLLWASEVAYGEAITGLVKMAGPAAGLTRLAGAHLDDLAETDDCAHI
Ga0116219_1049779113300009824Peatlands SoilVTDHVVVGDRVLLDISFRAAQARLRILARDGVLLRASEEVYGEGITGPMQLAGPAAGLTRLAGVGLETLRKQ
Ga0116219_1069985623300009824Peatlands SoilMDHIVVGDRVLLEASFHATRGRLGILARDGMLLWASEVAYGEGITGLVKMAGPAAGLTRLAGAHLDDLAETDDCAHITLQW
Ga0126376_1116829813300010359Tropical Forest SoilMTGHTAAGDRVALNASFHAARTRLRNLVRDGMLQRACEVAYGEGVTALAELAGPAARLTRLADACLADLTET
Ga0126372_1069463013300010360Tropical Forest SoilVTDHIVVGGRVLLAAGFRAARARLEILARDGMLLWLSEAAYGEGTTGLSKLAGPTAGLTR
Ga0126378_1223507823300010361Tropical Forest SoilVIDHTVVGDRVALNVGFRAARTRLRILAKGGTLPRASEVAYGEGITALVELAGPAAGLTRLAGVCLE
Ga0126379_1004348653300010366Tropical Forest SoilVRDHTAVADRVLLDASFRAARARLEIAAGDGMLLWASEVAYGEGITGLVKLAGPAAGLTRLAGVRLD
Ga0136449_10209473713300010379Peatlands SoilVTDHIVVGDRVLLDISFRAVRARLRILARDGVLLRASQEAYGEGITGQMQLAGPAACLTRLAGVGLENLAETSLRPYRAPVGSHRS*
Ga0126383_1201501813300010398Tropical Forest SoilVTDHIVVGDRVLLDVSFRAARARLEILARGEMLLWASEVAYGEGITRLVKLAGPAAGLTRLAGVRLDDLAQTFNCAHVPLQW
Ga0137372_1100087213300012350Vadose Zone SoilVTDHIVVGDRVLLDVGFHTARDRLTTRAIDGMLSRASEAAYGEGITHLVAAAGR
Ga0137366_1104970413300012354Vadose Zone SoilMDHTVVGDRVAVNIGFHAARTRLRMLAKGGILLRASEVAYGEGTAALVELAGPAAGLTRLADVCLED
Ga0164301_1191095213300012960SoilMTDHTVVGDRVALDVGFLAGRTRLRILAEGGMLLRASEVAYGEGITALVELAGPAAGLTRLADVCLEDLTG
Ga0181532_1030399413300014164BogVKDHIVVGDRVLLDASFSAARARLEILASDGMLLWASEVAYGEGITGLVKAAGPAAG
Ga0182008_1066677513300014497RhizosphereVLNVGFRAARTRLRILTVGGMLLRASEAAHSEGIIAVVELAGPAAGLTRLADVCTEDLTQTGDCAHIAL
Ga0182036_1085108423300016270SoilVTGHTVVGDRIALNVGFHAARTRLRILAKGGMLPQACEVAYGEGITVLVELAGPAAGLTRLADVCLEDLTET
Ga0182041_1051701813300016294SoilMTAARPVPDPWTGSVTDRVVVGDRVLVDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQLAGP
Ga0182033_1199458823300016319SoilMTDHIVVGDRVLIGAGFRAARARLELLASDEMLPRAAEAAYGTGITHLVAAAGPAAGLTR
Ga0182035_1032144113300016341SoilVTDQIVVGDRVLLDISFPAARARLAILAGDGVLLEASEEAYGEAITGLVQLAGPAAGLTRLSGV
Ga0182032_1092997613300016357SoilVTDRVVVGDRVLPDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQLAGPAAGLTRLAEV
Ga0187802_1020603523300017822Freshwater SedimentMDQIVVGDRVLFDASFRAARTRLEILARDGILLRASEVAYGESTAILIKAAGPAAGLT
Ga0187820_130029813300017924Freshwater SedimentMDQIVVGDRVLFDASFRAARTRLEILARDGILLRASEVAYGAGTAILVKAAGPEAGLTRLAELRLEDQAETADCAHI
Ga0187806_130255913300017928Freshwater SedimentMDQIVVGDRVLFDASFRAASTRLEILARDGILLRASEVAYGEGTTVLVKAAGPGAGLTRLAEVGLENQA
Ga0187814_1003632723300017932Freshwater SedimentMDQIVVGDRVLFDTSFRAARTRLEILARDGILLRASEVAYGEGTGILVKAAGPAAGLTRLAGAHLEDQADTADCAH
Ga0187814_1032341033300017932Freshwater SedimentVTDCVVVGDRVLLDISFPAARARLGILAADGVLLRASEEAYGEGITGLVQLAGPPTGLTRLAEVGLDDLA
Ga0187814_1040241813300017932Freshwater SedimentVTDHTVVGDRVLLHASFSALRARLGLLAWDGMLLWASEVAYGDGIAGL
Ga0187808_1023319423300017942Freshwater SedimentMDQIVVGDRVLFDTSFRAARTRLEILARDGILLRASEVAYGEGTGILVKAAGPAAGLTRLAEARLEDH
Ga0187808_1042673913300017942Freshwater SedimentVTDCVVVGDRVLLDISFPAARARLGILAADGVLLRASEEAYGEGITGLVQLAGPPTGLTRLAEVGL
Ga0187817_1047806723300017955Freshwater SedimentMDQIVVGDRVLFDASFRAASTRLEVLARDGILLRASEVAYGEGTTVLVKAAGPGAGLTRLAE
Ga0187780_1146368313300017973Tropical PeatlandVTDHTVVGDRVALEVSFHAARNRLRSLAKGGTLSHACDVAYGQGIIALVELAGPAAGLTRLADVCL
Ga0187777_1125980013300017974Tropical PeatlandVTDRIVVGDRVLLDAGFRAARARLGILARDGMLLWASEVAYGEGITTLVNAA
Ga0187777_1141249323300017974Tropical PeatlandMTDQIVVGDRLRLAAGFHAARARLEILAGDEVLRQAAEAAYGTGITHLVAAAGPAAG
Ga0187782_1029537713300017975Tropical PeatlandVTDQFAVGDRVLLDAGFRAARARLEILARDQMLPWACEVAYGEGVSGMVTLAGPAAGLTR
Ga0187810_1049393513300018012Freshwater SedimentMDQIVVGDRVLFDTSFRAARTRLEILARDGILLRASEVAYGEGTGILVKAAGPAAGLTRLAEAHLEDQADTADCAHIVLQWEAIA
Ga0187766_1032711723300018058Tropical PeatlandVTAAWPVPDPWTGSVTDHIVVGDRVLLDISFRAARARLGTLARDGVLLGASEEAYSNGITGLVQPAGPAAGLTRLAGV
Ga0187784_1037035613300018062Tropical PeatlandMDQIVVGDRILFDADFSAVRTRLELLARDGILLRASEVAYGDGITTLVRAAGPAAGLTRLAEVQLE
Ga0187772_1050851013300018085Tropical PeatlandVTDRIVVGDRVLLDVGFGAARARLGILARDGMLGWASEVAYGEGITVLVNAAGPAAGPTR
Ga0187769_1099474913300018086Tropical PeatlandVTDLIVVGDRVLLEARFGAARARLGILAGDGMLQWASEAAYGEGTAALVRAA
Ga0187769_1140757413300018086Tropical PeatlandVTDHIFVGGRVVLDVGFGAARARLGILARDGMLHRACEAAYGEGITGLVTAAGPAAGLSRLTGIRLADLAQTDHCSRIALRWEAI
Ga0187768_104348233300020150Tropical PeatlandMDCVVVGDRVLLDISFPAARARLGILAADGVLLRASEEAYGEGITGLVQLAGPPTGLTRLAEVGLD
Ga0213874_1013038113300021377Plant RootsMTDHIVVGGRVLLDAGFHAARARLGTLARDEMLLRASEEAYGEGITGLVKAAGPAAGLTRLAGARLDDPAGT
Ga0213874_1031966523300021377Plant RootsVTDHTAVGVRVALNTGFHAAWARLKVLARGGMLPRACEVAYGEGIAGLAELAGPAAGLARLAGVCLEDLTETDDCAHI
Ga0207692_1101105123300025898Corn, Switchgrass And Miscanthus RhizosphereMTSHTAVGDRVPLNLGFPAAWTRLRDLARDGMLQRACEVAYGEGVAALAELAGPAARLTRLADVCLADLTETGDRAHIALQW
Ga0207700_1192164513300025928Corn, Switchgrass And Miscanthus RhizosphereMTGHTAAGDRVALDAGFHAARTRLRNLIRRGMLQRACEVAYGEGVAALAELAGPAARLTRLADVCLADLT
Ga0207664_1140298123300025929Agricultural SoilMTGHTAAGDRVALDAGFHAARTRLRNLIRRGMLQRACEVAYGEGVAALAELAGPAARLTR
Ga0207702_1094254713300026078Corn RhizosphereMTGHTAAGDRVALDAGFHAARTRLRNLVRGGMLQRAGSLAYGQGITALAELAGPAARLTRLADLMLAPAGEQA
Ga0208565_116330423300027662Peatlands SoilVKDQIVVGDRVLFDASFRAARTRLEILSRDGILLRASEVAYGAGTTILVKAAGPE
Ga0209178_143924223300027725Agricultural SoilMTGHTAVGDRVPLDIGFHTAQIRLRSLVRDGTLQRACEEAYGEGVAALAELAGADAGRTRLADVCLADLTETGNRAHIAL
Ga0209039_1025810323300027825Bog Forest SoilVKDHIVVGDRVLLDASFSAARARLEILASEGMLPWASEVAYGEGITGLVKAAGPAAGLTRLAAV
Ga0209415_1112753813300027905Peatlands SoilVTDHVVVGDRVLLDISFRAAQARLRILARDGVLLRASEEVYGEGITGPMQLAGPAAG
Ga0318571_1013845423300031549SoilMTDHIVVGDRVQLEADFRAARTRLEILAGDEMLLRASEAAYGTGTTHLVAAAGPAAG
Ga0318571_1023116713300031549SoilVTDHLVVGDRVALNVGFHAARTRLRILAKGGMLPRASEVAYGEGVTALVELAGPAAGLTRLVGVCLGDLTETAD
Ga0318515_1007164113300031572SoilVTDRVVVGDRVLLDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQLAGPPTGLTRLAEVGLDDLAATDHCA
Ga0318542_1034202523300031668SoilMTDHIVVGDRVLLAAGFRAARARLEILAGDEMLFRVSEEAYGTGITHLVAAAGPAAGLTRLAAAYLARPTGTDGCAHVSLRWE
Ga0318561_1036731723300031679SoilMSDHIVIGDRVLLDASFRAVRVRLEMLAGDGMLAWASEVAYGEGITRLVTAAGPAAGLTRLAAVHVDDLAETHDCAHI
Ga0318574_1061178923300031680SoilVTDHVVVGDRVLLGTGFHAARARLEILASDEMLRRACEAAYGEGISALVKAAGPAAGLTRLAGARLDDLTGTGQCAHITLGWE
Ga0318572_1005576143300031681SoilMTDHIVVGDRVQLEAGFRAARTRLEILAGDEMLLRASEAAYGTGTTHLVAAAGPAAG
Ga0318496_1063136723300031713SoilMTNQIVVGDRVLLEAGFRAARARLEMLAGDEVLQRASEAAYGTGITHLVAAAGPEAGLEQ
Ga0318493_1058550423300031723SoilMTDHIVVGDRVLLAAGFRAARARLEILAGDEMLFRVSEEAYGTGITHLVAAAGLAAGLTRLAAAYLA
Ga0318493_1081781913300031723SoilMSDHLVVGDRVLLDVGFRAAQARLEILAKKGMLSWASEVAYGEGITSLVTAAGPAAGLTRLAGAHLDDLA
Ga0318501_1041736513300031736SoilMSDHIVIGDRVLLDASFRAVRVRLEMLAGDGMLAWASEVAYGEGITRLVTAAGPAAG
Ga0318501_1072235523300031736SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGRTRLAGAN
Ga0306918_1073190723300031744SoilVAAARLVPDPWTRSVTDHVVVGDRVLLDISFRAARARLPMLASDGVLLGASEEAYGEGITGLVQLAGPTAGQTRLA
Ga0318502_1009869613300031747SoilMTDHTVVGDRVVLDVGFRAARTRLRVLAKGGMLLHASEAAYGEGITTLVELAGPGAGLTRLAEVCLEDLTETDDCA
Ga0318502_1073436023300031747SoilVIDHTVVGDRVALNVGFHAARTRLRTLARGGMLPRASEVAYGEGIAALVELAGPAAGLTRLADVCLE
Ga0318494_1047022013300031751SoilVTDRVVVGDRVLLDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQLAGPTAGQTRLAGVSLDNLAEADHCAHIALRWEAIA
Ga0318554_1002294153300031765SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGLTRLAGANLDKLTGTDGCAHTSL
Ga0318554_1033209633300031765SoilVTGHTVVGDRVLLDAGFHAARTRLRILVQGGMLQRASETAYGEGITALAELAGPAAARTRLADVSLEDLTETDDC
Ga0318521_1048152913300031770SoilMSDHLVVGDRVLLDVGFRAAQARLEILAKKGMLSWASEVAYGEGITSLVTAAGPAAVTRL
Ga0318566_1025767023300031779SoilVTDQIVVGDRVLLDISFPAARARLAILAGDGVLLEASEEAYGEAITGLVQLAGPAAG
Ga0318547_1032462823300031781SoilMTNQIVVGDRVLLEAGFRAARARLEMLAGDEVLQRASEAAYGTGITHLVAAAS
Ga0318547_1065572313300031781SoilVANHIVVGDRVGLNLGFHAARTRLRGLARGGMLPRASEVAYGEGISALVELAGAAAGLTRLADVSLEDL
Ga0318552_1062815813300031782SoilVTDRVVVGDRVVLDVGFRAARARLEVLARDKMLPWASEVAYGEGITGLVKLAGPAAGLTRLASVRLDDLAQTGNCAHIPF
Ga0318576_1007317633300031796SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGLTRLAGAGREKHA
Ga0318523_1034759013300031798SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAG
Ga0318497_1005657113300031805SoilMTNQIVVGDRVLLEAGFRAARARLEMLAGDEVLQRASEAAYGTGITHLVAAAGPAARK
Ga0318568_1040449823300031819SoilMTNQIVVGDRVLLEAGFRAARARLEMLAGDEVLQRASEAAYGTGITHL
Ga0318499_1010944423300031832SoilVTDRVVVGDRVLLDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQVAGPAAGLTRLSGVGLDNLAVNMACL
Ga0310917_1111415113300031833SoilVTDRVVVGDRVLVDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQLAGPAAGLTRLSGVGLDNLAVNTA
Ga0318517_1039427313300031835SoilMSDHIVIGDRVLLDASFRAVRVRLEMLAGDGMLAWASEVAYGEGITRLVTAAGPAAGLTRLAAVHVDDLAETHDCAHIP
Ga0318512_1015968723300031846SoilMTNQIVVGDRVLLEAGFRAARARLEMLAGDEMLQRASEAAYGTGITHLVA
Ga0306925_1101024023300031890SoilMTDHIVVGDRVQLEAGFRAARTRLEILAGDEMLLRASEAAYGTGTTHLVAAA
Ga0318536_1047521913300031893SoilMSDHIVIGDRVLLDASFRAVRVRLEMLAGDGMLAWASEVAYGEGITRLVTAAGPAAGLTRLAAVHVDDLAETHDCAHIPL
Ga0318536_1069359423300031893SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGLTRLAGANLDKLTGTDGCAHTSLRW
Ga0318520_1030418433300031897SoilVTGHTVVGDRVLLDAGFHAARTRLRILVHGGMLQRASETAYGEGITALAELAGPAAARTRLADVSLEDLTETDD
Ga0306923_1174198713300031910SoilMSDHIVIGDRVLLDASFRAVRVRLEMLAGDGMLAWASEVAYGEGITRLVTAAGPAAGLTR
Ga0306923_1225290913300031910SoilVTDHIVVGDRVLLGTGFRAARARLEILASDEMLPRACEAAYGVGITALVKAAGPAAGLTRLAGARLG
Ga0306923_1248690123300031910SoilMTDHIVVGDRVLLAAGFRAARARLEILAGDEMLFRVSEEAYGTGITHLVAAAGPAAGLTRLAAAYLARPTGTDGCAHVSLRWEAI
Ga0310916_1001672913300031942SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGLTRLAGANLDKLTGTDGC
Ga0310913_1069254823300031945SoilVTDRVVVGDRVLLDISFRAARARLRMLAGDGVLLGASEEAYGEGITGLVQLAGPAAGLTR
Ga0310909_1094714623300031947SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGLTRLAGANLD
Ga0306926_1120878413300031954SoilVTAHIAVGDRVVLDADFRAARARLEILVRDQMLPVACEMAYGEGITGMVKLAGPAAALTRLAGIRLGDLTQAGHCTHLP
Ga0306922_1038792133300032001SoilMTDHIVIGDRVLLDAGFRAARARLEILASDEMLLQASEEAYGAGITSLVAAAGPAAGLTRLAGAN
Ga0318558_1028258513300032044SoilVIDHTVVGDRVALNVGFHAARTRLRTLARGGMLPRASEVAYGEGIAALVELAGPAAGLTRLADVCLEDLTE
Ga0318513_1037695813300032065SoilMSDHIVIGDRVLLDASFRAVRVRLEMLAGDGMLAWASEVAYGEGITRLVTAAGPAAGLTRLAAVHVDDLAETHD
Ga0318553_1025677923300032068SoilVTDQIVVGDRVLLDISFPAARARLAILAGDGVLLEASEEAYGEAITGLVQLAGPAAGLTRLAEVGLDDPAETG
Ga0306924_1003912773300032076SoilMTDHIVVGDRVQLEAGFRAARTRLEILAGDEMLLRASEAAYGTGTTHLVAAAGPAAGLTRLAAAYMARPAGTDGCVHVS
Ga0318540_1012441413300032094SoilVTDQIVVGDRVLLDISFPAARARLAILAGDGVLLEASEEAYGEAITGLVQLAGPAAGLTRLAEVGLDDPAETGH
Ga0318540_1027120823300032094SoilVIDHTVVGDRVALNVGFHAARTRLRTLARGGMLPRASEVAYGQGITALVELAGPAAGLTRLADVCLEDLTETD
Ga0311301_1012316933300032160Peatlands SoilVTDHIVVGDRVLLDISFRAARARLGTLGRDGVLLRASEEAYGEGIAGLVKLASPAAGLTRLAGVSLENLAETDDCAHIALPVGSHRS
Ga0335080_1074488823300032828SoilVIDHIVVGDRVLLGTGFGTARARLEILARDEMLQRASEAAYGEGITTLVKAAGPAAGLTRLAGVRLDDPAGTAQ
Ga0335080_1198366613300032828SoilMPDRWTDGVTDHIVVGDRVVLGASLGAARVRLQTLARDGMLLRAAEAAYGEAVTGLVEAAGPAAGLTRLAG
Ga0335070_1020521833300032829SoilMTDQIVVGVRVLLEAGFQAARARLEMLAGDEVLQRASEAAYGTGITHLV
Ga0335081_1214596023300032892SoilVADHFVVGDRVLLDASFSAARARLEILARDGMLARASEAAYGEGITCLVRMAGPAAG
Ga0335071_1160113313300032897SoilMTDQIVVGDRVRLGTGFRAARTRLEILADDEVLGQAAEAAYGTGITHLVATTGPAAGLTRLAWAHLDQVTGTDGCAHGSLRWEAIAADGT
Ga0335083_1062714713300032954SoilMIGHTAVGDRVALNVGFRAARTRLRSLARDGMLESACEVAYGEGVAALGELVGPAARLTRLAGTCLADLTETGDRAHI
Ga0335073_1133254023300033134SoilMTPVNPVPGRWTGAMTGHTVVGDRVVLNVGFYAARTQLRILAKGGMLPRASEVAYGEGITALVELAGPAAGLTRLA
Ga0335077_1114154323300033158SoilMDHIVVGDRVLLSAGFHAARNRLRLLVRDGILLSASETAYGEGITGLVQAVGPPAGMTRLATAR


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