Metagenome / Metatranscriptome Family F078172

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078172
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	90 residues
Representative Sequence	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETIATKDGPQAELAIDAQSGIVHQDRDDDDD
Number of Associated Samples	77
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	53.68 %
% of genes near scaffold ends (potentially truncated)	38.79 %
% of genes from short scaffolds (< 2000 bps)	71.55 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.552 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.724 % of family members)
Environment Ontology (ENVO)	Unclassified (44.828 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.345 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 8.13% β-sheet: 21.95% Coil/Unstructured: 69.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13670	PepSY_2	6.90
PF13417	GST_N_3	3.45
PF00032	Cytochrom_B_C	3.45
PF02518	HATPase_c	3.45
PF00034	Cytochrom_C	2.59
PF06568	DUF1127	2.59
PF03649	UPF0014	1.72
PF02777	Sod_Fe_C	1.72
PF13531	SBP_bac_11	0.86
PF07690	MFS_1	0.86
PF13432	TPR_16	0.86
PF13360	PQQ_2	0.86
PF00872	Transposase_mut	0.86
PF13751	DDE_Tnp_1_6	0.86
PF03466	LysR_substrate	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	3.45
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	2.59
COG0390	ABC-type iron transport system FetAB, permease component	Inorganic ion transport and metabolism [P]	1.72
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	1.72
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
All Organisms	root	All Organisms	28.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
cellular organisms	root	All Organisms → cellular organisms	28.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.31 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.45 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.72 %
Brucellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Brucella/Ochrobactrum group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Brucella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella	0.86 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.55 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.72 %
Brucella anthropi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella anthropi	0.86 %
Bradyrhizobium sp. 170	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 170	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005175\|Ga0066673_10276483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	976	Open in IMG/M
3300005187\|Ga0066675_11109179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	590	Open in IMG/M
3300005332\|Ga0066388_101590788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1149	Open in IMG/M
3300005363\|Ga0008090_15514823	Not Available	939	Open in IMG/M
3300005436\|Ga0070713_101601467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella anthropi	632	Open in IMG/M
3300005764\|Ga0066903_100290927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2573	Open in IMG/M
3300005764\|Ga0066903_104513865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	742	Open in IMG/M
3300005764\|Ga0066903_106971522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300009012\|Ga0066710_103902727	Not Available	559	Open in IMG/M
3300009088\|Ga0099830_11329232	Not Available	597	Open in IMG/M
3300009090\|Ga0099827_11504078	Not Available	586	Open in IMG/M
3300009792\|Ga0126374_10755407	Not Available	738	Open in IMG/M
3300010048\|Ga0126373_10156549	All Organisms → cellular organisms → Bacteria → Proteobacteria	2171	Open in IMG/M
3300010048\|Ga0126373_10735749	Not Available	1046	Open in IMG/M
3300010048\|Ga0126373_10773479	Not Available	1021	Open in IMG/M
3300010048\|Ga0126373_10938403	Not Available	930	Open in IMG/M
3300010048\|Ga0126373_12676802	Not Available	556	Open in IMG/M
3300010048\|Ga0126373_12798373	Not Available	544	Open in IMG/M
3300010358\|Ga0126370_10694737	Not Available	893	Open in IMG/M
3300010358\|Ga0126370_10739989	Not Available	869	Open in IMG/M
3300010359\|Ga0126376_10486687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 170	1138	Open in IMG/M
3300010360\|Ga0126372_11099241	Not Available	813	Open in IMG/M
3300010361\|Ga0126378_10891943	Not Available	996	Open in IMG/M
3300010366\|Ga0126379_12635209	Not Available	600	Open in IMG/M
3300010366\|Ga0126379_13570755	Not Available	521	Open in IMG/M
3300010376\|Ga0126381_100400357	All Organisms → cellular organisms → Bacteria → Proteobacteria	1912	Open in IMG/M
3300010376\|Ga0126381_101151518	Not Available	1121	Open in IMG/M
3300010376\|Ga0126381_101189955	Not Available	1101	Open in IMG/M
3300010376\|Ga0126381_102840312	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300010398\|Ga0126383_12528303	Not Available	598	Open in IMG/M
3300010398\|Ga0126383_12616312	Not Available	588	Open in IMG/M
3300012198\|Ga0137364_11436114	Not Available	510	Open in IMG/M
3300012199\|Ga0137383_11225619	Not Available	538	Open in IMG/M
3300012206\|Ga0137380_11534172	Not Available	551	Open in IMG/M
3300012207\|Ga0137381_10198795	Not Available	1737	Open in IMG/M
3300012209\|Ga0137379_10343230	Not Available	1403	Open in IMG/M
3300012211\|Ga0137377_10743061	Not Available	915	Open in IMG/M
3300012361\|Ga0137360_10883858	Not Available	770	Open in IMG/M
3300012362\|Ga0137361_10438240	Not Available	1200	Open in IMG/M
3300012362\|Ga0137361_10547377	Not Available	1062	Open in IMG/M
3300012685\|Ga0137397_10102410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2099	Open in IMG/M
3300012918\|Ga0137396_10562266	Not Available	845	Open in IMG/M
3300012923\|Ga0137359_11380639	Not Available	593	Open in IMG/M
3300012923\|Ga0137359_11719782	Not Available	514	Open in IMG/M
3300012925\|Ga0137419_11269662	Not Available	618	Open in IMG/M
3300012929\|Ga0137404_10838857	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300012971\|Ga0126369_10465596	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300015241\|Ga0137418_11280828	Not Available	512	Open in IMG/M
3300016270\|Ga0182036_10704925	Not Available	817	Open in IMG/M
3300016371\|Ga0182034_10019827	All Organisms → cellular organisms → Bacteria → Proteobacteria	3997	Open in IMG/M
3300016371\|Ga0182034_10414686	Not Available	1108	Open in IMG/M
3300016371\|Ga0182034_10434042	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300016371\|Ga0182034_11366039	Not Available	619	Open in IMG/M
3300016422\|Ga0182039_10013477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4831	Open in IMG/M
3300016422\|Ga0182039_10056217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2707	Open in IMG/M
3300016422\|Ga0182039_10795164	Not Available	839	Open in IMG/M
3300016445\|Ga0182038_10253249	All Organisms → cellular organisms → Bacteria → Proteobacteria	1417	Open in IMG/M
3300016445\|Ga0182038_10308267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1297	Open in IMG/M
3300020579\|Ga0210407_10507811	Not Available	942	Open in IMG/M
3300021170\|Ga0210400_10982071	Not Available	687	Open in IMG/M
3300021178\|Ga0210408_10439464	Not Available	1039	Open in IMG/M
3300021560\|Ga0126371_10655543	Not Available	1198	Open in IMG/M
3300021560\|Ga0126371_10857248	Not Available	1053	Open in IMG/M
3300021560\|Ga0126371_11751565	Not Available	744	Open in IMG/M
3300021560\|Ga0126371_12977425	Not Available	574	Open in IMG/M
3300021560\|Ga0126371_13110014	Not Available	561	Open in IMG/M
3300025928\|Ga0207700_10815232	Not Available	835	Open in IMG/M
3300031545\|Ga0318541_10013514	All Organisms → cellular organisms → Bacteria → Proteobacteria	3746	Open in IMG/M
3300031573\|Ga0310915_10045588	All Organisms → cellular organisms → Bacteria → Proteobacteria	2810	Open in IMG/M
3300031680\|Ga0318574_10035173	Not Available	2560	Open in IMG/M
3300031682\|Ga0318560_10248624	Not Available	955	Open in IMG/M
3300031747\|Ga0318502_10230730	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300031835\|Ga0318517_10058155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1634	Open in IMG/M
3300031845\|Ga0318511_10442199	Not Available	598	Open in IMG/M
3300031845\|Ga0318511_10513819	Not Available	555	Open in IMG/M
3300031879\|Ga0306919_10024936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3683	Open in IMG/M
3300031890\|Ga0306925_10124585	All Organisms → cellular organisms → Bacteria → Proteobacteria	2759	Open in IMG/M
3300031890\|Ga0306925_10496687	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300031910\|Ga0306923_10930256	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300031912\|Ga0306921_11575310	Not Available	715	Open in IMG/M
3300031941\|Ga0310912_10838399	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300031947\|Ga0310909_10330970	Not Available	1278	Open in IMG/M
3300031954\|Ga0306926_10384777	Not Available	1733	Open in IMG/M
3300031954\|Ga0306926_11271037	Not Available	861	Open in IMG/M
3300032001\|Ga0306922_11253947	Not Available	752	Open in IMG/M
3300032035\|Ga0310911_10132196	All Organisms → cellular organisms → Bacteria → Proteobacteria	1394	Open in IMG/M
3300032039\|Ga0318559_10461297	Not Available	593	Open in IMG/M
3300032044\|Ga0318558_10524121	Not Available	592	Open in IMG/M
3300032052\|Ga0318506_10097816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1251	Open in IMG/M
3300032059\|Ga0318533_10679820	Not Available	755	Open in IMG/M
3300032068\|Ga0318553_10694739	Not Available	532	Open in IMG/M
3300032076\|Ga0306924_11742825	Not Available	651	Open in IMG/M
3300032261\|Ga0306920_101645756	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300032261\|Ga0306920_102045496	Not Available	801	Open in IMG/M
3300033289\|Ga0310914_10033077	All Organisms → cellular organisms → Bacteria → Proteobacteria	4145	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.10%
Loam	Environmental → Terrestrial → Soil → Loam	6.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.28%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1017206971	3300002245	Forest Soil	MRKVTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETV
Ga0066673_102764831	3300005175	Soil	MKRLFLAAVISSFVVVGAASIYAASNSPDRFIPGGGPITEQQIRDKLTADGFSNIQIAPQGSTFQTNATKDGRALKLAIDAQSGTVLKAQDDDDDG*
Ga0066675_111091791	3300005187	Soil	MKRLFLAAVISSFVVVSGASINSASNLSGRLIPGIGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKEGHPVGLAIDAESGTVLQARDDDDDD*
Ga0066388_1015907881	3300005332	Tropical Forest Soil	KRLFLAVTISSFVAVGAASTDAAGDSSSARLIPGNGPITEQQIKDKLIADGFSNIKITSAGDTFQTNAVRNGRALRLAIDAQTGTVLQQDDDDDD*
Ga0008090_155148231	3300005363	Tropical Rainforest Soil	MRKVTLAVITVVVAAGAASIYAAGNSSGDRLIPESGPITEQQIRDKLAAEGFSNIQITLRDSVFETVATKDGRQAEL
Ga0070713_1016014671	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFFLAAVVSSFVVFSAASIYAASNLSGRLIPGIGPITEQQIQDKLTADGFSNIQITSQGSIFQTNATKDGRVIGLAIDAESGTVLQARDDDDDD*
Ga0066903_1002909273	3300005764	Tropical Forest Soil	MKRLFLAVTISSFVAVGAASTDAAGDSSSARLIPGNGPITEQQIKDKLIADGFSNIKITSAGDTFQTNAVRNGRALRLAIDAQTGTVLQQDDDDDD*
Ga0066903_1045138651	3300005764	Tropical Forest Soil	MRKVILAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRGKLTAEGLSNIQITLRGSVFETVATKDGRQAELAIDAQSGIVHQDRYDDDD*
Ga0066903_1069715221	3300005764	Tropical Forest Soil	EDGSMKSLPFAVVITSFLAISATSIYAAGDSSNRLIPGNGPITEQQIRDKLAADGFSNIQVTSQGRAFETTAARDGRVLRLAIDAASGSVLEAQDDDDDD*
Ga0066710_1039027271	3300009012	Grasslands Soil	HDKTEDASMKRLFLAAVISSFVVVSGASINSASNLSGRLIPGIGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKEGHPVGLAIDSESGTVLQARDDDDDD
Ga0099830_113292321	3300009088	Vadose Zone Soil	AVISSFVAVSAASTYAASNLSGRLIPGVGPITEQQIRDKLTADGFSNIQITLQGSMFHTNATKGGRALGLAIDAESGTVLQARDDDDDD*
Ga0099827_115040781	3300009090	Vadose Zone Soil	MKRLFLAAIISSFVAVSAASIYAASNLSGRLIPGIGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKEGHPVGLAIDAESGTVLQARDDDDDD*
Ga0126374_107554071	3300009792	Tropical Forest Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTADGFSNIQITLKDGVFETVATKNGRQADLAID
Ga0126374_112200721	3300009792	Tropical Forest Soil	MEDGPMRKVTLAVIIVAVAAGAASIYAAGNPSGDRLIPGSGPITEQQIRDKLAAEGFSNIQITLRGSV
Ga0126384_100777291	3300010046	Tropical Forest Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTADGFSNIQITLTSSVFET
Ga0126373_101565492	3300010048	Tropical Forest Soil	MMKMEGESMKRLFLAVTISSFVAVGAASTDAAGDSSSARLIPGNGPITEQQIKDKLIADGFSNIEITSAGDTFQTNAVRNGRALRLAIDAQTGTVLQQDDDDDD*
Ga0126373_107357491	3300010048	Tropical Forest Soil	MEDGPMRKVTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITDQQIRDKLTADGFSNIQITLKGSVFETVATKNGRRAELAIDAQSGIVRQEGDDDDDD*
Ga0126373_107734792	3300010048	Tropical Forest Soil	MEDAPMRKTTLAVITVAVAAGAASIYAASNSSGVRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD*
Ga0126373_109384031	3300010048	Tropical Forest Soil	MVATDTTEVANNEVENRPMRKITLVAFAVAVAAGVASIYAANDSSGGRLIPGSGPITEQQIREKLTADGFTNIQVRLRGTVFETIATRNGLPTVLEIDAQSGIVQQDRVDDDDN*
Ga0126373_126768021	3300010048	Tropical Forest Soil	AAFAVTVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIHVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD*
Ga0126373_127983731	3300010048	Tropical Forest Soil	VAAGAASIYAASNSSGDRLIPGSGPITEQQIRDKLTADGFSNIQITLKDGVFETVATKNGRQADLAIDAQSGIVRQEGDDDDD*
Ga0126370_106947371	3300010358	Tropical Forest Soil	MEDAPMRKTTLAVITFAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD*
Ga0126370_107399892	3300010358	Tropical Forest Soil	VAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITSRGSVFETVATKDGRQAELTIDAQSGIVHQDSDDDD*
Ga0126376_104866872	3300010359	Tropical Forest Soil	MEDGPMRKVTLAVIIVAVAAGAASIYATGNSSADRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELAI
Ga0126372_110992411	3300010360	Tropical Forest Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITERQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELATDAQSGIVSQDRDDDDD*
Ga0126378_108919432	3300010361	Tropical Forest Soil	MEDAPMRKTTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD*
Ga0126378_111184412	3300010361	Tropical Forest Soil	VITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGLSNIQITLRGSVFETVATEGRGR*
Ga0126379_126352091	3300010366	Tropical Forest Soil	PQEYPRRCWRQKHRIELAANEMEDGPMRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTADGFSNIQITLRGSVFETVATKDGRQAELAIAAQSGIVSQDRDDDD
Ga0126379_135707551	3300010366	Tropical Forest Soil	MMKMEGESMKRLFLAVTISSFVAVGAASTDAAGDSSSARLIWGHGPITEQQIKDKLIADGFSNIKITSAGDTFQTNAVRNGRALRLAIDAQTGT
Ga0126381_1004003572	3300010376	Tropical Forest Soil	MEDAPMKKVTLAAIAIAVAAGAASIYAASNSSGGRLIPGSGPITDQQIRDKLTADGFSNIQITLKGSVFETVATKNGRRAELAIDAQSGIVRQEGDDDDDD*
Ga0126381_1011515182	3300010376	Tropical Forest Soil	MRKTTLAVITVAVAAGAASIYAASNSSGDRLIPGSGPITEQQIRDKLTAEGFSSIQITLRGNVFETVATKDGRPAACSAASAVSY*
Ga0126381_1011899551	3300010376	Tropical Forest Soil	MEDAPMRKTTLAVITFAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELTIDAQSGIVRAEGDDDDDD*
Ga0126381_1028403121	3300010376	Tropical Forest Soil	MVRVTHPAEVANNEGKDRPMRKITLAAFAVTVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIHVTLRGTMFETIASRNGR
Ga0126383_125283031	3300010398	Tropical Forest Soil	PMRKVTLAVIIVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD*
Ga0126383_126163121	3300010398	Tropical Forest Soil	KVTLAAITVAVVAGAASIYAASNSSGDRLISRSGPITEQQIRDKLTADGFSNIQITLKGSVFETVATKNGRQADLAIDAQSARGETMTMTIDR*
Ga0126383_133005501	3300010398	Tropical Forest Soil	MENGPMRKITLAIITVAVAAGAASIDAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVF
Ga0137364_114361141	3300012198	Vadose Zone Soil	MKRLFLAAVISSFVVVGAASIYAASNSPDRFIPGGGPITEQQIRDKLTADGFSNIQIAPQGSTFQTNATKDGRALKLAIDAQSGTVLKAQDDDDDD*
Ga0137383_112256191	3300012199	Vadose Zone Soil	MKRLFLAAVISSFVAVSAASTYAASNLSGRLIPGVGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKEGHPVGLAIDAESGTVLQARDDDDDD*
Ga0137380_115341721	3300012206	Vadose Zone Soil	MKRLFLAAVISSFVVVSAASINSASNLSGRLIPGIGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKEGHPVRLAIDAESGTVLQARNPGR*
Ga0137381_101987951	3300012207	Vadose Zone Soil	MKRLFLAAVISSFVVVSAASINSASNLSGRLIPGIGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKEGHPVGLAIDAESGTVLQARDDDDDD*
Ga0137379_103432302	3300012209	Vadose Zone Soil	MKRVFLAAVISSVVAVNAASIYAASNLSGRLIPGIGPIAEQQIRDKLTADGFSNIQITSQGGIFQTNATKDGRALGLAIDAESGTVLQARDDDEDD*
Ga0137377_107430611	3300012211	Vadose Zone Soil	MATEASFQGRQHEVEDEAMRKVIRAALIGGAFAVGAATMYAASSPSGGRLIPGTGPITEQQIRDKLTADGFSNIQITLRGGIFEATATKDARAAELAIEAQSGTVLQARGD
Ga0137360_108838581	3300012361	Vadose Zone Soil	MATEALFQTSPLEREDASMKRVFLAAVISSFVVVSAASTYAARNLSGRLIPGVGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKDGRALGLAIDAESGTVLQARVDDEDD*
Ga0137361_104382402	3300012362	Vadose Zone Soil	MKRVFLAAVISSVVAVNAASIYAASNLSGRLIPGIGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKDGRALGLAIDAESGTVLQARDDDEDD*
Ga0137361_105473771	3300012362	Vadose Zone Soil	MKRLFLAAIISSFVAVSAASICAASNLSGRLIPGIGPITEQQIRDKLTGDGFSNIQITLQGSMFHTNATKGGRALGLAIDAESGTVLQARDDDDDD*
Ga0137397_101024102	3300012685	Vadose Zone Soil	VEDEAMRKVIRAALIGGAFAVGAASMYAASSPSGGRLIPGTGPITDKQIRDKLTADGFSNIQITLRGGIFEAAATKDGRGRAGDRSPTVLQARGDDDDDD*
Ga0137396_105622661	3300012918	Vadose Zone Soil	MFQSRQHEVEDEAMRKVIRAALIGGAFAVGAASMYAASSPSGGRLIPGTGPITDKQIRDKLTADGFSNIQITLRGGIFEAAATKDGRGRAGDRSPTVLQARGDDDDDD*
Ga0137359_113806391	3300012923	Vadose Zone Soil	MKRLFLVAVISSFVAVSAASTYAASNMSGRLIPGVGPITEQQIRDKLTADGFSNIQITSQGSIFQTNATKDGRALGLAIDAESGTVLQARDDDDDD*
Ga0137359_117197822	3300012923	Vadose Zone Soil	QHEVEDEAMRNVIRAALIGGAFAVGAASMYAASSLSGGRLIPGTGPITEQQIRDKLTADGFSNIQITLRGGIFEAAATKDGRAAELAIEAQRSSKLAAMMTTMIDR*
Ga0137419_112696621	3300012925	Vadose Zone Soil	VEDEAMRKVIRAALIGGAFAVGAASMYAASSPSGGRLIPGTGPITEQQIRDKLTADGFSNIQITLRGGIFEATATKDGHAAELAIEAQSGTVLQARGDDDDDD*
Ga0137404_108388572	3300012929	Vadose Zone Soil	FILIGAVSIYAATDDPASRLVLGTGPITEQQIRDKLGADGFTNIQITPRSIFETVATKDGRQLKLAIDAQSGTVVRTGDDDDD*
Ga0126369_104655961	3300012971	Tropical Forest Soil	MMKMEGESMKRLFLAVTISSFVAVGAASTDAAGDSSSARLIPGNGPITEQQIKDKLIADGFSNIKITSAGDTFQTNAVRNGRALRLAIDAQTGTVLQQDDDDDD*
Ga0137418_112808281	3300015241	Vadose Zone Soil	VEDEAMRKVIRAALIGGAFAVGAASMYAASSPSGGRLIPGTGPITEQQIRDKLTADGFSNIQITLRGGIFEAAATKDGRAAEL
Ga0182036_107049251	3300016270	Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITGQQIRDKLTAEGFSNIQISLRGNVFKTVATKDGRQAELAIDA
Ga0182036_107298451	3300016270	Soil	MRKVTLAVITVAVAVGAASIYAAGNSSGDKLIPGSGPITEQQIRDKLTAEGFSNIQITVRGSVFETVATK
Ga0182033_109668871	3300016319	Soil	MRKVTLAVITVAVAAGAASIYAAGNSSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATK
Ga0182033_110084131	3300016319	Soil	MRKVTLAVITVAVAVGAASIYAAGNSSGDKLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATK
Ga0182035_104098632	3300016341	Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKD
Ga0182032_102730873	3300016357	Soil	MRKVTLAVITVAVAAGAASIYAAGNSSGDRLIPWSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQ
Ga0182034_100198275	3300016371	Soil	AAGAASIYAASNSSGGRLIPGSGPITEQQIRDKDGFSNIQITLKGSVFETVATKNGRQAELAIDAQSGIVRREGDDDDDD
Ga0182034_104146861	3300016371	Soil	KSPTMKWRIRPMRKTTLVAFAVAVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGVSNIQVRLRGTVFETIATRNGLPTVLEIDAQSGIVHQDRVDDDDN
Ga0182034_104340423	3300016371	Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPCSGPITEQQIRDKLTAEGFSNIQITSRGSVFETVATKDGGQAE
Ga0182034_113660392	3300016371	Soil	ITAAVAAGAASIYAASHSSGDRLIPGSGPITEQQIRDKLTADGFSNIQITLKGSVFETVATKNGRQADLAIDAQSGIVRQGGDDDNDD
Ga0182039_100134774	3300016422	Soil	MRKTTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTTDGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRAEGDDDDDD
Ga0182039_100562175	3300016422	Soil	MRKVTLAVITVAVAAGAASIYSASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETIATKDGPQAELA
Ga0182039_107951641	3300016422	Soil	MRKVTLAVITVAVAAGAASIYAAGNSSGDRLIPWSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQDELAIDAQSG
Ga0182038_102532492	3300016445	Soil	MRKIILAAFAVAVAAGAPSIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0182038_103082673	3300016445	Soil	MRKVTLAVITVAVAAGAASIYAAGNSSGDRLIRGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGGQAERAIDAQSEIVS
Ga0210407_105078112	3300020579	Soil	MKRVFLAAVISAFIGVGAASIYAASNSSGGRLIPGNGPITEQQIRDKLTADGFSNIQITSQGSIFETKATKDGRAVRLAIDAQSGTVLQARDDDDDD
Ga0210400_109820711	3300021170	Soil	MKRLFLAAVISSLIVVSAVAINAASNLSDRLIPGTGPITEQQIRDKLTADGFSNIQITSQGSIFKTNATKDGRTFGLAIDAESGTVRQARDDDDDD
Ga0210408_104394642	3300021178	Soil	MKRFFLAAVISSFVLVSAASIYAASNFSGRLIPGIGPITEQQIRDKLAADGFSNIQIASQGSIFQTNATKDGHAIGLAIDAESGTVLQARDDDDDD
Ga0126371_103986561	3300021560	Tropical Forest Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKG
Ga0126371_106555431	3300021560	Tropical Forest Soil	MRKTTLAVITFAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEERQAELAIDAQSGIVRREGDDDDDD
Ga0126371_108572482	3300021560	Tropical Forest Soil	LAVITVAVAAGAASIYAASNPSGDRLIPGSGPINRATNPGQADGGGLVEYPDHIAGNVFETVATKDGRQAEMAIDAQSGIVHEDRDDDDD
Ga0126371_117515651	3300021560	Tropical Forest Soil	MVRVTHPTEVANNEGKDRPMRKITLAAFAVTVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIHVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0126371_129774251	3300021560	Tropical Forest Soil	MRKITLAAFAVAVAAGAASIYAASDSSGGRSMPGSGPITEEQIRDKLTAEGFSNIQVTLRGTVFQTIATRNGRPTVLEIDAQS
Ga0126371_131100141	3300021560	Tropical Forest Soil	MRKTTLVAFAVAVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVRLRGTVFETIAIRNGLPTVLEIDAQSGIVHQDRDDDD
Ga0207700_108152321	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFFLAAVVSSFVVFSAASIYAASNLSGRLIPGIGPITEQQIQDKLTADGFSNIQITSQGSIFQTNATKDGRVIGLAIDAESGTVLQARDDDDDD
Ga0318541_100135142	3300031545	Soil	MKRILLASIIGGCIVVGGTSIYSATNWPGSRLIPGTGPITEQQIRDKLTADGFSNIQITLQGNTFQTVATRNGRPTILEIDAQSGIVHQDRDDDED
Ga0310915_100455882	3300031573	Soil	MRKTTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTTDGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD
Ga0318574_100351731	3300031680	Soil	MRKVTLAVITVAVAAGAASIYSASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELAIDAQSG
Ga0318560_102486243	3300031682	Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPIIEQQTAEGFSNIQITLRGSVFETVATKDGRQAELAIDAQSGIAHQDRDDDD
Ga0318502_102307302	3300031747	Soil	CIVVGGTSIYSATNWPGSRLIPGTGPITEQQIRDKLTADGFSNIQITLQGNTFQTVATRNGRPTILEIDAQSGIVHQDRDDDED
Ga0318550_105032701	3300031797	Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAE
Ga0318568_103676151	3300031819	Soil	MRKVTLAVITVAVAAGAASIYAAGNSSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQ
Ga0318517_100581552	3300031835	Soil	MRKVTLAVITVAVAAGAASIYSASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAALTIDAQSGIVHQDRDDDD
Ga0318511_104421991	3300031845	Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITSRGSVFETVATKDGGQAELTIDAQSGIVHQDRDDD
Ga0318511_105138191	3300031845	Soil	VYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0306919_100249361	3300031879	Soil	MRKTTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD
Ga0306925_101245853	3300031890	Soil	MRKTTLVAFAVAVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVRLRGTVFETIATRNGLPTVLEIDAQSGIVHQDRVDDDDN
Ga0306925_104966871	3300031890	Soil	AVAAGAASIYAASHSSGDRLIPESGPITEQQIRDKLTADGFSNIQITLKGSVFETVATKNGRQADLAIDAQSGIVRQGGDDDNDD
Ga0306925_111922072	3300031890	Soil	MRKVTLAVITVAVAVGAASIYAAGNSSGDKLIPGSGPITEQQIRDKLTAEGFSNIQITLRGS
Ga0306923_109302561	3300031910	Soil	MRKIILAAFAVAVVAGAASVYAASDSSGGRLIPGSGPITEHQIRDKLTADGFSNIQITLRGTMFETIASRNGRSTLLEIDAQSGVVHQNRDDDDDD
Ga0306921_115753102	3300031912	Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITSRGSVFETVATKDGGQAELTIDAQSGIVHQDRDDDD
Ga0310912_108383992	3300031941	Soil	VANNEVKDRLMRKIILAAFAVAVVAGAASVYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0310913_102293151	3300031945	Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGS
Ga0310909_103309701	3300031947	Soil	AAFAVAVVAGAASVYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0306926_103847773	3300031954	Soil	MRKIILAAFAVAVAAGAPSIYAASDSSGGRLIPGSGPITEHQIRDKLTADGFSNIQITLRGTMFETIASRNGRSTLLEIDAQSGVVHQNRDDDDDD
Ga0306926_112710371	3300031954	Soil	MRKIILAAFAVAVVAGAASVYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0318530_104847211	3300031959	Soil	MRKVTLAVITVAVAAGAASIYSASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQ
Ga0306922_112539471	3300032001	Soil	MRKTTLVAFAVAVAAGAASIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLRGTMFETIASRNGRSTLLEIDAQSGVVH
Ga0310911_101321961	3300032035	Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELAIDA
Ga0318559_104612971	3300032039	Soil	PMRKIILAAFAVAVAAGAPSIYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0318558_105241212	3300032044	Soil	MRKVTLAVITVAVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETIATKDGPQAELAIDAQSGIVHQDRDDDDD
Ga0318506_100978162	3300032052	Soil	MRKVTLAVITVAVAAGAASIYSASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELAIDAQSGIAHQDRDDDD
Ga0318533_100409356	3300032059	Soil	MRKTTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTTDGFSNIQITLNGSVFETVAT
Ga0318533_106798201	3300032059	Soil	MRKVTLAVITVAVAAGAASIYAAGNSSGDRLIRGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAERAIDAQSG
Ga0318505_105631701	3300032060	Soil	MKRILLASIIGGCIVVGGTSIYSATNWPGSRLIPGTGPITEQQIRDKLTADGFSNIQITLQGNTFQTVATRNGRPTILEIDAQSGIVHQDRD
Ga0318553_106947391	3300032068	Soil	MRKVTLAVITVAVAAGAASIYSASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELA
Ga0306924_117428251	3300032076	Soil	THPTEVANNEVKDRLMRKIILAAFAVAVVAGAASVYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0307472_1012000011	3300032205	Hardwood Forest Soil	MRKVTLAVITVAVAAGAASIYAASNSSGGRLISGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETFATKDGRQAE
Ga0306920_1016457561	3300032261	Soil	RLMRKIILAAFAVAVVAGAASVYAASDSSGGRLIPGSGPITEQQIRDKLTADGFSNIQVTLRGTMFETIASRNGRPTVLEIDAQSGIVHQNRDDDDDD
Ga0306920_1020454961	3300032261	Soil	MRKLTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETVATKDGRQAELAID
Ga0310914_100330771	3300033289	Soil	AVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTADGFSNIQITLNGSVFETVATKEGRQAELAIDAQSGIVRREGDDDDDD
Ga0310914_101914173	3300033289	Soil	MRKTTLAVITVAVAAGAASIYAASNSSGGRLIPGSGPITEQQIRDKLTTDGFSNIQITLNGSVF
Ga0310914_113875971	3300033289	Soil	MRKVTLAVITVVVAAGAASIYAASNPSGDRLIPGSGPITEQQIRDKLTAEGFSNIQITLRGSVFETV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078172

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences