Metagenome Family F078349

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078349
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	99 residues
Representative Sequence	MTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR
Number of Associated Samples	95
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.28 %
% of genes near scaffold ends (potentially truncated)	28.45 %
% of genes from short scaffolds (< 2000 bps)	74.14 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (26.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.379 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 52.69% β-sheet: 0.00% Coil/Unstructured: 47.31%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF04234	CopC	57.76
PF10282	Lactonase	5.17
PF01297	ZnuA	4.31
PF11604	CusF_Ec	4.31
PF13442	Cytochrome_CBB3	1.72
PF13419	HAD_2	0.86
PF00441	Acyl-CoA_dh_1	0.86
PF07690	MFS_1	0.86
PF01569	PAP2	0.86
PF00578	AhpC-TSA	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	57.76
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	72.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.59 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	72.41 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	72.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	68.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	68.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100995881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	773	Open in IMG/M
3300002558\|JGI25385J37094_10087828	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	948	Open in IMG/M
3300002558\|JGI25385J37094_10189990	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300002561\|JGI25384J37096_10250625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300002886\|JGI25612J43240_1060805	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300004281\|Ga0066397_10125467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300004633\|Ga0066395_10632766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	630	Open in IMG/M
3300005172\|Ga0066683_10405614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	842	Open in IMG/M
3300005180\|Ga0066685_10090297	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300005180\|Ga0066685_10092863	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300005186\|Ga0066676_10131429	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300005186\|Ga0066676_10572162	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300005332\|Ga0066388_100042409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4526	Open in IMG/M
3300005332\|Ga0066388_106122897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300005353\|Ga0070669_100622576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	906	Open in IMG/M
3300005445\|Ga0070708_100649598	All Organisms → cellular organisms → Bacteria → Proteobacteria	994	Open in IMG/M
3300005447\|Ga0066689_10087786	All Organisms → cellular organisms → Bacteria → Proteobacteria	1759	Open in IMG/M
3300005518\|Ga0070699_100338452	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1354	Open in IMG/M
3300005549\|Ga0070704_100379690	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300005552\|Ga0066701_10771769	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	574	Open in IMG/M
3300005555\|Ga0066692_10053934	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300005558\|Ga0066698_10959262	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300005559\|Ga0066700_11168354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300005586\|Ga0066691_10038655	All Organisms → cellular organisms → Bacteria → Proteobacteria	2507	Open in IMG/M
3300005586\|Ga0066691_10292021	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300005713\|Ga0066905_100009397	All Organisms → cellular organisms → Bacteria → Proteobacteria	4534	Open in IMG/M
3300005764\|Ga0066903_100073749	All Organisms → cellular organisms → Bacteria	4391	Open in IMG/M
3300006049\|Ga0075417_10371948	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	703	Open in IMG/M
3300006049\|Ga0075417_10628387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300006845\|Ga0075421_101371731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	779	Open in IMG/M
3300006847\|Ga0075431_101576222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	615	Open in IMG/M
3300006847\|Ga0075431_101789052	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300006852\|Ga0075433_10546482	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300006853\|Ga0075420_100939746	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	744	Open in IMG/M
3300006854\|Ga0075425_100186769	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
3300006854\|Ga0075425_101719551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	705	Open in IMG/M
3300006880\|Ga0075429_101059186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300006904\|Ga0075424_100529324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1258	Open in IMG/M
3300006969\|Ga0075419_10984471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300007255\|Ga0099791_10002105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7984	Open in IMG/M
3300007255\|Ga0099791_10078569	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1502	Open in IMG/M
3300007265\|Ga0099794_10742663	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300009012\|Ga0066710_101185390	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1183	Open in IMG/M
3300009012\|Ga0066710_101804409	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300009094\|Ga0111539_11125210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	912	Open in IMG/M
3300009100\|Ga0075418_10361835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1549	Open in IMG/M
3300009147\|Ga0114129_10356196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1937	Open in IMG/M
3300009156\|Ga0111538_10328235	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1936	Open in IMG/M
3300009162\|Ga0075423_10827381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	980	Open in IMG/M
3300009792\|Ga0126374_10083868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1752	Open in IMG/M
3300009792\|Ga0126374_10201857	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1258	Open in IMG/M
3300009803\|Ga0105065_1062238	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	556	Open in IMG/M
3300009807\|Ga0105061_1036316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300009818\|Ga0105072_1013349	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1463	Open in IMG/M
3300010046\|Ga0126384_10383217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1182	Open in IMG/M
3300010304\|Ga0134088_10462806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	622	Open in IMG/M
3300010358\|Ga0126370_11234157	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300010400\|Ga0134122_10062464	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2879	Open in IMG/M
3300012203\|Ga0137399_10280280	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1373	Open in IMG/M
3300012204\|Ga0137374_10019212	All Organisms → cellular organisms → Bacteria	7778	Open in IMG/M
3300012206\|Ga0137380_10213912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1745	Open in IMG/M
3300012207\|Ga0137381_10557654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	999	Open in IMG/M
3300012207\|Ga0137381_11285636	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300012207\|Ga0137381_11309726	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300012349\|Ga0137387_10305128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1151	Open in IMG/M
3300012351\|Ga0137386_10997352	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300012685\|Ga0137397_10416531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1000	Open in IMG/M
3300012925\|Ga0137419_11840030	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300012927\|Ga0137416_10190066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1640	Open in IMG/M
3300012929\|Ga0137404_10679323	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	930	Open in IMG/M
3300012944\|Ga0137410_10995467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300012948\|Ga0126375_11616856	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300012948\|Ga0126375_12060413	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300012976\|Ga0134076_10081468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1263	Open in IMG/M
3300015371\|Ga0132258_10026498	All Organisms → cellular organisms → Bacteria	12828	Open in IMG/M
3300015372\|Ga0132256_102195599	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	657	Open in IMG/M
3300017656\|Ga0134112_10091465	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300017656\|Ga0134112_10453558	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M
3300018074\|Ga0184640_10026342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2271	Open in IMG/M
3300018075\|Ga0184632_10033590	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2195	Open in IMG/M
3300019789\|Ga0137408_1017890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1627	Open in IMG/M
3300021073\|Ga0210378_10032025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2095	Open in IMG/M
3300021073\|Ga0210378_10134753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	956	Open in IMG/M
3300021086\|Ga0179596_10406473	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	687	Open in IMG/M
3300022534\|Ga0224452_1010647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2398	Open in IMG/M
3300025930\|Ga0207701_10652796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	893	Open in IMG/M
3300026118\|Ga0207675_101229425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300026285\|Ga0209438_1192879	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300026296\|Ga0209235_1008474	All Organisms → cellular organisms → Bacteria	5734	Open in IMG/M
3300026297\|Ga0209237_1046625	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300026298\|Ga0209236_1015305	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4413	Open in IMG/M
3300026324\|Ga0209470_1015747	All Organisms → cellular organisms → Bacteria	4267	Open in IMG/M
3300026334\|Ga0209377_1030795	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2573	Open in IMG/M
3300026334\|Ga0209377_1041285	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2122	Open in IMG/M
3300026358\|Ga0257166_1035981	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300026528\|Ga0209378_1009442	All Organisms → cellular organisms → Bacteria	5997	Open in IMG/M
3300026532\|Ga0209160_1207805	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	717	Open in IMG/M
3300027561\|Ga0209887_1011310	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
3300027577\|Ga0209874_1019733	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1922	Open in IMG/M
3300027655\|Ga0209388_1009840	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2556	Open in IMG/M
3300027873\|Ga0209814_10198230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	867	Open in IMG/M
3300027873\|Ga0209814_10402785	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	602	Open in IMG/M
3300027874\|Ga0209465_10028750	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2609	Open in IMG/M
3300027909\|Ga0209382_11612017	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300027954\|Ga0209859_1004549	All Organisms → cellular organisms → Bacteria	3066	Open in IMG/M
3300028381\|Ga0268264_10402607	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1316	Open in IMG/M
3300028587\|Ga0247828_10889471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300031720\|Ga0307469_10001139	All Organisms → cellular organisms → Bacteria	9971	Open in IMG/M
3300031720\|Ga0307469_10144186	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300031740\|Ga0307468_100200949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1348	Open in IMG/M
3300031740\|Ga0307468_101534554	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300032174\|Ga0307470_10077222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1823	Open in IMG/M
3300032180\|Ga0307471_100279316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1743	Open in IMG/M
3300032180\|Ga0307471_100687071	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300032205\|Ga0307472_100065570	All Organisms → cellular organisms → Bacteria	2343	Open in IMG/M
3300034417\|Ga0364941_005376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2216	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.45%
Host-Associated	Host-Associated	21.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.14%
Plants	Host-Associated → Plants	21.55%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.97%
Sediment	Environmental → Aquatic → Sediment	2.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	1.72%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.24%
Loam	Environmental → Terrestrial → Soil → Loam	9.48%
Sand	Environmental → Terrestrial → Soil → Sand	5.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.03%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.17%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	5.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1009958811	3300000559	Soil	MTSLQSIADRGVLVAMARRRVLPLLVGLVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGAHACQLGVMPALALVLALTATIALSGARAASAPLRRSAPRGPPLR*
JGI25385J37094_100878282	3300002558	Grasslands Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIQACQLDAMPVLALALALAAAMALACARPASAPLRCFAPRGPPLR*
JGI25385J37094_101899901	3300002558	Grasslands Soil	VILLSAMTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR*
JGI25384J37096_102506252	3300002561	Grasslands Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIQACQLDAMPVLALALALAAAMALACARPASA
JGI25612J43240_10608051	3300002886	Grasslands Soil	RARDDALQSIADRXVLGVMARRRVLPLVVGLIAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0066397_101254671	3300004281	Tropical Forest Soil	MTTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0066395_106327661	3300004633	Tropical Forest Soil	MTTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFPGARAASAPLRRSAPRGPPLR*
Ga0066683_104056142	3300005172	Soil	RSRSRARDDALQSIADRGVLGVMVRRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLVLMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSAPRGPPLR*
Ga0066685_100902971	3300005180	Soil	MRKRHVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIHACQLDAMPVLALALALAAAIALACARPASAL
Ga0066685_100928632	3300005180	Soil	MVRRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLVLMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSAPRGPPLR*
Ga0066676_101314293	3300005186	Soil	MRKRHVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIHACQLDAMPVLALALALAAAIALACARPASALLRCFAPRGPPLR*
Ga0066676_105721621	3300005186	Soil	VILLSAITKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR*
Ga0066388_1000424093	3300005332	Tropical Forest Soil	MTSLQSLADRGVLGFMARRRVLPLLVGLLAFLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQVGVVPALALVLALTATIALSGARPASALLRRSAPRGPPLR*
Ga0066388_1061228971	3300005332	Tropical Forest Soil	DVHDQEPMTTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0070669_1006225761	3300005353	Switchgrass Rhizosphere	GVLGAMTRRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSARRGPPLR*
Ga0070708_1006495982	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTKRRVLPLLLGLAALLLACASLPHLHAGPGSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAALALACARPASAPLRCFAPRGPPLR*
Ga0066689_100877862	3300005447	Soil	MVRRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSAPRGPPLR*
Ga0070699_1003384522	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIHACQLDAMPVLALALALAAALALACARPASAPLRCFAPRGPPLR*
Ga0070704_1003796902	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0066701_107717691	3300005552	Soil	MTKRRVLPLLLGLAAFLLACASLPHLHAGPGSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACARPASALLRCFAPRGPPLR*
Ga0066692_100539342	3300005555	Soil	MTKRRVLPLLLGLAAFLLACASLPHLHAGPGSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAALALACAYPASAPRRCFAPRGPPLR*
Ga0066698_109592622	3300005558	Soil	MARRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLVLMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSAPRGPPLR*
Ga0066700_111683541	3300005559	Soil	DGASLASSRATPCNRAPIVILLSAMTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR*
Ga0066691_100386553	3300005586	Soil	MTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR*
Ga0066691_102920211	3300005586	Soil	MVRRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGSHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0066905_1000093975	3300005713	Tropical Forest Soil	MTALQSLADRGVLSAMARRRVLPLLVGLVAFLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATVAFSGARAASAPLRRSAPRGPPLR*
Ga0066903_1000737493	3300005764	Tropical Forest Soil	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLAITATIALSGARTASAPLRRSAPRGPPLP*
Ga0075417_103719482	3300006049	Populus Rhizosphere	MARCRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR*
Ga0075417_106283871	3300006049	Populus Rhizosphere	VHDQEPMRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0075421_1013717312	3300006845	Populus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR*
Ga0075431_1015762222	3300006847	Populus Rhizosphere	MARCRVLPLLVGLVALLLVGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR*
Ga0075431_1017890522	3300006847	Populus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR*
Ga0075433_105464823	3300006852	Populus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQPGVMPALALLLALTATIAFSGAGAASAPLRRSAPRGPPLR*
Ga0075420_1009397461	3300006853	Populus Rhizosphere	DPDVHDQDPMRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0075425_1001867691	3300006854	Populus Rhizosphere	LQSIADRGVLGVMARRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATIAFSGAGAASAPLRRSAPRGPPLR*
Ga0075425_1017195511	3300006854	Populus Rhizosphere	DRGVLSAMARCRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR*
Ga0075429_1010591862	3300006880	Populus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0075424_1005293241	3300006904	Populus Rhizosphere	RRVDPDVHDQEPMTALQSIADRGVLGVMARRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATIAFSGAGAASAPLRRSAPRGPPLR
Ga0075419_109844712	3300006969	Populus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAA
Ga0099791_100021053	3300007255	Vadose Zone Soil	MARRRVLPLVVGLIAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0099791_100785692	3300007255	Vadose Zone Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIQACQLDAMPVLALALALAAAIALACARPASAPLRCFAPRGPPLR*
Ga0099794_107426631	3300007265	Vadose Zone Soil	LLLGLAAFLLACASLPHLHIGPHSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMITLAHVCPASAPLRRSAPRGPPLR*
Ga0066710_1011853901	3300009012	Grasslands Soil	MRKRHVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIHACQLDAMPVLALALALAAAIALACARPASALLRCFAPRGPPLR
Ga0066710_1018044093	3300009012	Grasslands Soil	VILLSAITKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCP
Ga0111539_111252102	3300009094	Populus Rhizosphere	VGLVALLLVGTITPHLHAGSESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR*
Ga0075418_103618352	3300009100	Populus Rhizosphere	MTTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0114129_103561963	3300009147	Populus Rhizosphere	DVHDQDPMRTLQSIADRGVLGAMTRRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR*
Ga0111538_103282354	3300009156	Populus Rhizosphere	MTRRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQPGVMPALALLLALTATIAFSGAGAASAPLRRSAPRGPPLR*
Ga0075423_108273812	3300009162	Populus Rhizosphere	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR*
Ga0126374_100838682	3300009792	Tropical Forest Soil	VGLLAFLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQVGVVPALALVLALTATLAFSGARAASAPLRRSAPRGPPLR*
Ga0126374_102018573	3300009792	Tropical Forest Soil	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLAITATIALSGARTASAPLRRSAPRGPPLR*
Ga0105065_10622381	3300009803	Groundwater Sand	MTKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACACPTSAPLRCFAPRGPPLR*
Ga0105061_10363161	3300009807	Groundwater Sand	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACACPTSAPLRCFAPRGPPLR*
Ga0105072_10133491	3300009818	Groundwater Sand	MRKRRVLPLLLGLAAFMLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACACPTSAPLRCFAPRGPPLR*
Ga0126384_103832172	3300010046	Tropical Forest Soil	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALAVVLALTATIALSGARTASAPLRRSAPRGPPLR*
Ga0134088_104628062	3300010304	Grasslands Soil	MVRRRVLPLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0126370_112341571	3300010358	Tropical Forest Soil	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTISPHLHAGLESGFWNADHDLVLMATFGTHACQLGVMPALALVLAITATIALSGARTASAPL
Ga0134122_100624641	3300010400	Terrestrial Soil	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALAATIPLSGTRTVSAPLRRSAPRGPPLR*
Ga0137399_102802803	3300012203	Vadose Zone Soil	MTRRRVLPLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0137374_100192122	3300012204	Vadose Zone Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPGSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAVAIALACAHPASAPVRCFAPRGPPLR*
Ga0137380_102139122	3300012206	Vadose Zone Soil	MTKRRCVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIHACQLDAMPVLALALALAAAIALACARPASALLRCFAPRGPPLR*
Ga0137381_105576542	3300012207	Vadose Zone Soil	MARRRVLPLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGSHACQPDATSALALVLALTATIALAGSRAANAPLRRSAPRGPPPC*
Ga0137381_112856362	3300012207	Vadose Zone Soil	MARRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLVLMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSA
Ga0137381_113097262	3300012207	Vadose Zone Soil	LQSIADRDVLGVMARRRVLLLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0137387_103051282	3300012349	Vadose Zone Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACARPASALLRCFAPRGPPLR*
Ga0137386_109973522	3300012351	Vadose Zone Soil	LLGAMTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLMLALAAMLVLAHVCPASAPLRRSAPRAPPLR*
Ga0137397_104165313	3300012685	Vadose Zone Soil	MMRRRVLPLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0137419_118400302	3300012925	Vadose Zone Soil	MTRRRVLPLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPGLALVLALTATIALAGSRAASAPLRRSAPRGPPLR*
Ga0137416_101900663	3300012927	Vadose Zone Soil	MTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDAMPVLVLALALAAAIVLAYARPASAPLRCFAPRGPPLR*
Ga0137404_106793232	3300012929	Vadose Zone Soil	MARRRVLLLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR*
Ga0137410_109954672	3300012944	Vadose Zone Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACARPASAPLRCFAPRGPPLR*
Ga0126375_116168562	3300012948	Tropical Forest Soil	MTTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFSGARAASAPLRRSA
Ga0126375_120604131	3300012948	Tropical Forest Soil	MARRRVLPLLVGLVAFLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATVAFPGARAASAPLRRSAPRGPPLR*
Ga0134076_100814681	3300012976	Grasslands Soil	MRKRHVLPLLLGLAAFLLACASLPHLHAGPVSGFWNADHDLTLMATFGIHACQLDAMPVLALALALAAAIALACARPASAPLRCFAPRGPPLR*
Ga0132258_100264985	3300015371	Arabidopsis Rhizosphere	MTTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR*
Ga0132256_1021955992	3300015372	Arabidopsis Rhizosphere	MTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR*
Ga0134112_100914651	3300017656	Grasslands Soil	MARRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLVLMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSAPRGPPLR
Ga0134112_104535582	3300017656	Grasslands Soil	MRKRHVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR
Ga0184640_100263425	3300018074	Groundwater Sediment	MRKRRVLPLLLGLAAFMLACASLPHLHIGPDSGFWNADHDLTLMAAFGTHACQPDAMPVLALVLALTAALALACARPASAPLRCFAPRGPPLR
Ga0184632_100335903	3300018075	Groundwater Sediment	MTKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMAAFGTHACQPDAMPALALVLVVTAAVALACARPASAPLRCFAPRGPPLR
Ga0137408_10178903	3300019789	Vadose Zone Soil	MARRRVLLLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR
Ga0210378_100320252	3300021073	Groundwater Sediment	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALACACPTSAPLRCFAPRGPPLR
Ga0210378_101347531	3300021073	Groundwater Sediment	MTKRRALPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALAYACSTSAPLRCFAPRGPPLR
Ga0179596_104064732	3300021086	Vadose Zone Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIQACQLDAMPVLALALALAAAIALACARPASAPLRCFAPRGPPLR
Ga0224452_10106475	3300022534	Groundwater Sediment	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAALALACACPTGAPLRCFAPRGPPLR
Ga0207701_106527963	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLALSGARAASAPLRRSAPRGPPLR
Ga0207675_1012294251	3300026118	Switchgrass Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLTLMAAFGTYACQLDAMPVLGLALVLVATISLAATRVVAAPR
Ga0209438_11928792	3300026285	Grasslands Soil	DDALQSIADRGVLGVMARRRVLPLVVGLIAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR
Ga0209235_10084742	3300026296	Grasslands Soil	VILLSAMTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR
Ga0209237_10466253	3300026297	Grasslands Soil	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIQACQLDAMPVLALALALAAAMALACARPASAPLRCFAPRGPPLR
Ga0209236_10153052	3300026298	Grasslands Soil	MTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR
Ga0209470_10157474	3300026324	Soil	MVRRRVLPLLVGLAAFLLVSTIAPHLHAGPESGFWNADHDLVLMATFGTHACQPDAMPALALVLALTATIALSGSRAASAPLRRSAPRGPPLR
Ga0209377_10307953	3300026334	Soil	MTKRRVLPLLLGLAAFLLACASLPHLHAGPGSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAALALACAYPASAPRRCFAPRGPPLR
Ga0209377_10412854	3300026334	Soil	MTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASA
Ga0257166_10359812	3300026358	Soil	GLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGIQACQLDAMPVLALALALAAAIALACARPASAPLRCFAPRGPPLR
Ga0209378_10094427	3300026528	Soil	VILLSAITKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR
Ga0209160_12078051	3300026532	Soil	SRSGARGDGASLASSRATPCNRAPIVILLSAMTKRRCVLPLLLGLAAFLLACASLPHLHIGPDSGFWNADHDLSLMAAFGTHACQPDSMPALSLVLALAAMLVLAHVCPASAPLRRSAPRGPPLR
Ga0209887_10113101	3300027561	Groundwater Sand	MRKRRVLPLLLGLAAFMLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAALALACARPASAPLRCFAPRG
Ga0209874_10197331	3300027577	Groundwater Sand	MRKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMAAFGTHACQPDAMPVLALALALAAAIALTCARPASAPLRCFAPRGPPLR
Ga0209388_10098403	3300027655	Vadose Zone Soil	MARRRVLPLVVGLIAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIAFAGSRAASAPLRRSAPRGPPLR
Ga0209814_101982302	3300027873	Populus Rhizosphere	VHDQEPMRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR
Ga0209814_104027851	3300027873	Populus Rhizosphere	MARCRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR
Ga0209465_100287502	3300027874	Tropical Forest Soil	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFPGARAASAPLRRSAPRGPPLR
Ga0209382_116120171	3300027909	Populus Rhizosphere	MRTLQSIADRGVLGAMTRRRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR
Ga0209859_10045492	3300027954	Groundwater Sand	MKKRRVLPLLLGLAAFLLACASLPHLHAGPDSGFWNADHDLTLMATFGTHACQLDAMPVLALALALAAAIALTCARPASAPLRCFAPRGPPLR
Ga0268264_104026071	3300028381	Switchgrass Rhizosphere	QSIADRGVLGAMTRRRVLPLLVGLVALLLVGTITPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTATLAFSGARAASAPLRRSAPRGPPLR
Ga0247828_108894712	3300028587	Soil	MTTLQSIADRGVLGVMARRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATLAFSGARAASAPLRRAAPR
Ga0307469_100011396	3300031720	Hardwood Forest Soil	MTTLQSIADRGVLGVMARRRVLPLLVGFVALLLAGTISPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALLLALTVTLALSGARAASAPLRRSAPRGPPLR
Ga0307469_101441862	3300031720	Hardwood Forest Soil	MTALQSIADRGVLSVMARRRVLPLLVGLVALLLVGTISPHLHAGPESGFWNADHDLVLMATFGTHACPLGVMPALALVLALTATIAVSGARAASAPLRRSAPRGPPLR
Ga0307468_1002009492	3300031740	Hardwood Forest Soil	MARRRVLPLLVGLVAFLLASTISPHLHAGPEAGFWNADHDLALMATFGTHACQLGAMPFLALVLALTATIALSGSRAASAPLRRSAPRGPPLR
Ga0307468_1015345542	3300031740	Hardwood Forest Soil	MTKRRALPILLGLVALLLASVALPHLHAGPESGLWNQEHDLALMATFGTHAVQVGAMPVLALVLALTATIALSGARAASAPLRRSAPRGPPLR
Ga0307470_100772221	3300032174	Hardwood Forest Soil	MTALQSLADRGVLGAMARRRVLPLLVGLVALLLAGAISPHLHAGPESGFWNADHDLVLMATFGTHAVQVGAMPVLALVLALTATIALSGA
Ga0307471_1002793162	3300032180	Hardwood Forest Soil	MTALQSRADRGVLSAMARCRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR
Ga0307471_1006870712	3300032180	Hardwood Forest Soil	MARRRVLPLVVGLVAFLLVSTIAPHLHAGPESGFWNADHDLALMATFGTHACQPDAMPALALVLALTATIALAGSRAANAPLRRSAPRGPPLR
Ga0307472_1000655703	3300032205	Hardwood Forest Soil	DFHDQEPMTALQSLTDRGVLSAMARCRVLPLLVGLVALLLVGTIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGVMPALALVLALTATIALSGARTASAPLRRSAPRGPPLR
Ga0364941_005376_1311_1637	3300034417	Sediment	MTALQSLADRGVLGAMARRRVLPLLVGLAALLLAGAIAPHLHAGPESGFWNADHDLVLMATFGTHACQLGAMPVLALVLALTATIALFGARAASAPLRRSAPRGPPLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078349

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences