NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F078514

Metagenome / Metatranscriptome Family F078514

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F078514
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 130 residues
Representative Sequence MWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDV
Number of Associated Samples 88
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 15.79 %
% of genes near scaffold ends (potentially truncated) 98.28 %
% of genes from short scaffolds (< 2000 bps) 91.38 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (98.276 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(40.517 % of family members)
Environment Ontology (ENVO) Unclassified
(59.483 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(62.931 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 7.69%    β-sheet: 15.38%    Coil/Unstructured: 76.92%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110120MWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
98.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Grasslands Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
23.3%8.6%40.5%10.3%3.4%6.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25382J37095_1008711623300002562Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAERADAGSDERPMPIAASIFWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVE
JGI25382J37095_1012309323300002562Grasslands SoilMWKRVKQQRVQGRVARFRVPGGAEPDAPRVADEAMPLAASILWQPIDAPPGEDADLLPVFISQRALTAVHDHCAAGHDTCFGLLTGRLLRTSDTGASYLVVEST
JGI25388J43891_101937223300002909Grasslands SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWY
JGI25390J43892_1010822823300002911Grasslands SoilVTEEAYFNTEDLVLGSRMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCVATPAACFGLLIGDVVDSPEAGAPHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGGGEAA
Ga0066674_1030189113300005166SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDQRPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAGCFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTV
Ga0066674_1037794523300005166SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKT
Ga0066674_1055366513300005166SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKT
Ga0066672_1084384613300005167SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRL
Ga0066683_1011386613300005172SoilMWKRVKKQQVQGRVARFRVPGGAEPDAARAPDDAMPLAASILWQPIDAAPGQDAELPVFISQRALTAIHDHCAAGHETCFGLLTGRLVRTADTGASYLVVESTIRLPGGTGDDAKAALLEGWVV
Ga0066683_1061076523300005172SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAK
Ga0066680_1070225823300005174SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDTGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVTQDVLRKSGDLLVGWYR
Ga0066690_1066037023300005177SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGGGEA
Ga0066685_1041872223300005180SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQADPVHDDRSMPIAASILWKPIDGAAEADAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGG
Ga0066678_1103658313300005181SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQADPVYDDRSMPIAASILWKPIDGAAGADPGLLPIFITQRALAAVHDHCAATRETCYGFLTGNVFRSPDGDPAYLVVESTIRLPG
Ga0066676_1021835923300005186SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQADPVHDDRSMPIAASILWKPIDGAAEADAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKSG
Ga0070701_1075569313300005438Corn, Switchgrass And Miscanthus RhizosphereMWKRVKNGVQGRVARFRVPGGAEPAEAEGDRQQDDPGSDERPMPIAASILWKPIDAAAEPDAGLLSIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPY
Ga0070705_10018822723300005440Corn, Switchgrass And Miscanthus RhizosphereMWKRVKNGVQGRVARFRVPGGAEPAEADGDHQQDDPGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVA
Ga0070705_10169750813300005440Corn, Switchgrass And Miscanthus RhizosphereMWKRVKNGVQGRVARFRVPGGAEPAEAEGDRQQDDPGSDERPMPIAASILWKPIDAAAEPDAGLLSIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYLVVESTIRLPGSPDDDAKTVLVQGWVVAQD
Ga0070694_10010564723300005444Corn, Switchgrass And Miscanthus RhizosphereMWKRVKNGVQGRVARFRVPGGAEPAEADGDHQQADPGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVA
Ga0066686_1062287223300005446SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHEHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKT
Ga0066689_1064988423300005447SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLL
Ga0066689_1087846213300005447SoilVARFRIPGGAEPAPADGGRQPDDPGYDVRPMPIAASILWKPIDAPPEQDAGLIPVFITQRALAAVHDHCAATRETCFGLLAGSPYRAPETGLPYVVVESTIRLPGVIGDDAKAALMQGWVVAQDVVHR
Ga0070699_10110162313300005518Corn, Switchgrass And Miscanthus RhizosphereMWKRVKKEVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIEGAAERDTGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGAPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGDL
Ga0066697_1067562313300005540SoilMWKRVKAGVQGRVARFRVPGGAEPAPAEGNRQPDDPGYDGRPMPIAASILWKPIDGPPEQDAGLIPVFMTQRALAAVHDHCATTRETCFGLLTGNVYRAPETDLPYVIVESTIRLPGVIGDDAKAALMQGWVVAQDVVHR
Ga0070696_10030948313300005546Corn, Switchgrass And Miscanthus RhizosphereMWKRVKKEVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIEGAAERDTGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGAPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKS
Ga0066661_1083037423300005554SoilMWERVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASH
Ga0066692_1042979913300005555SoilVTEEAYFNTEDLVLGSRMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDTGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGA
Ga0066707_1002461313300005556SoilMWKRVKAGVQGRVARFRVPGGAEPAPAEGNRQPDDPGYDGRPMPIAASILWKPIDGPPEQDAGLIPVFMTQRALAAVHDHCATTRETCFGLLTGNVYRAPETDLPYVIVESTIRLPGVIGDDAKAALMQGWVVAQDVVHRTGDQLVGW
Ga0066698_1039429123300005558SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADTHRQADPVHDDRSMPIAASILWKPIDGAAEADAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKSGDLLVGWY
Ga0066698_1094878023300005558SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDQRPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPVACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTV
Ga0066700_1087614223300005559SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAK
Ga0066694_1044609013300005574SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTV
Ga0066708_1099312823300005576SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAGCFGLLIGDVVDSPETGASHVVVESTIRLP
Ga0066706_1115268913300005598SoilVTDEAYFNTEDLVLGSRMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDTGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQG
Ga0066706_1134942613300005598SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQ
Ga0066651_1051537913300006031SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRL
Ga0066656_1081052623300006034SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAVSILWKPIEGAAEQDAGLFPVFITQRVLAAVHEHCAATPATCFGLLIGDVVDSPETGASHVVVESTIRLPASPD
Ga0066653_1042170113300006791SoilMWKRVKVGVQGRVARFRIPGGAEPALADGGRQPDDPGYDVRPMPIAASILWKPIDAPPEQDAGLIPVFITQRALAAVHDHCAATRETCFGLLAGSPYRAPETGLPYVVVESTIRLPGVIGDDAKAALMQGWV
Ga0066653_1061696213300006791SoilMWKRVKNGAQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDV
Ga0066665_1044261013300006796SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDQRPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAGCFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVL
Ga0066659_1028627113300006797SoilMWKRVKNGVQGRVARFRVPGGAEPAEADGDRQDGPGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQHALAAVHDHCAATHAACFGLLIGDVVNSPDTGAPYIVVESTIRLPGSPDDEAKTVLVQGWVVAQDVLRKSGDLLVGWYRGG
Ga0066659_1076214023300006797SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQADPVYDDRSMPIAASILWKPIDGAAEEGAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKSG
Ga0066659_1130489223300006797SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDL
Ga0075433_1181699413300006852Populus RhizosphereMWKRVKKGVQGRVARFRVPGGAEPAEPASDERPMPVAASILWKPIDGAAEQDAGFPVFITQRALAAVHDHCAATRAACFGLLVGDVVDSPETGAPYVVVESTIRLPGSP
Ga0099793_1014963013300007258Vadose Zone SoilMWKRVKNGVQGRVARFRVPGGAEPAEADGDRQQDGPGSDERPMPIAASILWKPIDGAAEPDAGLPPIFITQHALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVAQDV
Ga0099793_1035752113300007258Vadose Zone SoilMWKRVKTGVQGRVVRFRAPGGAELVEAGADDQAMPIAASILWKPIDGGAEQNAGFPVFITQRALAAVHDHCAATRAACFGLLVGDVVDSPETEAPYVVVESTIRLPASPEDDAKTVLVQGWVVAQDVLRKS
Ga0099793_1036857213300007258Vadose Zone SoilMWKRVTTGVQGRVARFRVPGGAELVAAEAGYDDRPMPIAASILWKPIDGSTDQDAELPIFITQRALAAVHDHCATTRETCFGLLTGNLFRSPDTSAPYVVVESTIRLPGGVGEDATAALMQGWVVAQDV
Ga0066710_10373926123300009012Grasslands SoilMWKRVKNGAQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPEAGAPHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGGGEAA
Ga0066710_10491879123300009012Grasslands SoilMWKRVKVGVQGRVARFRIPGGAEPALADGGRQPDDPGYDVRPMPIAASILWKPIDAPPEQDAGLIPVFITQRALAAVHDHCATTRETCFGLLAGSPYRAPETGLPYVVVESTIRLPGVIGDD
Ga0099830_1022879713300009088Vadose Zone SoilMWKRVKNEVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIESAAERDAGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGAPYVVVEST
Ga0099830_1091703913300009088Vadose Zone SoilMWQRVKNGVQGRVARFRVPGGLAPAEAGADPQPDDPGSDRQMPIAASILWKPIDGAAEQDAGLPPIFITQRALAAVHDHCAATPETCFGLLTGNWFRSPETGTPYVVVESTIRLPGGTGDDAKAALMQGWVVAQDVVHRTGDQLVGWYRGRWSAETGL
Ga0066709_10311600713300009137Grasslands SoilVTDEAYFNTEDLVLGSRMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEHDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLV
Ga0127492_103482213300010087Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAEPDEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPESGASHVV
Ga0134070_1019822713300010301Grasslands SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGG
Ga0134088_1060407223300010304Grasslands SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADTHRQADPVHDDRSMPIAASILWKPIDGAAETDPALLPIFITQRALAAVHDHCAATRETCFGFLTGNVFRSPDTAASYLVVESTIRLPGGTGDDAKA
Ga0134071_1018786813300010336Grasslands SoilMWKRVKKQQVQGRVARFRVPGGAEPDAARAPDEAMPIAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVEPTVRLPGSPDEDAKTVLVQGWVV
Ga0134062_1046957823300010337Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPEAGAPHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYR
Ga0134125_1137834423300010371Terrestrial SoilMWKRVKNGVQGRVARFRVPGGAEPAEADGDHQQDDPGSDERAMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVAQD
Ga0134128_1232484213300010373Terrestrial SoilMWKRVKNGVQGRVARFRVPGGAEPAEADGDHQQDDPGSDERAMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGDMLIGWYRGGGGDAALSPAEADA
Ga0137364_1114941313300012198Vadose Zone SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDVGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGGGEAALSP
Ga0137380_1019358823300012206Vadose Zone SoilMWKRVKNRVQGRVTRFRVPGGAAPAEAGGDRQTEDAGTDDRPMPIAASILWKPIDGAAEDLGLLPIFITQRALAAMHDHCAATRGGCFGLLTGDVVNSPETGAPYLVVESTIRLPGSPDDDAKTVLVQG
Ga0137378_1172678813300012210Vadose Zone SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSG
Ga0137387_1010960013300012349Vadose Zone SoilMWKRVKKQRVQGRVARFRVPGGAEPDAARAPDEAMPLAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCTATRAACFGLLIGDVVNSPETGAPYVVVESTI
Ga0137387_1061290123300012349Vadose Zone SoilMWKRVKNRVQGRVTRFRVPGGAAPVEAGGDRQTEDAGTDDRPMPIAASILWKPIDGAAEDLGLLPIFITQRALAAMHDHCAATRGGCFGLLTGDVVNSPETGAPSLVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRG
Ga0137386_1038438413300012351Vadose Zone SoilMWKRVKKQRVQGRVARFRVPGGAEPDAARAPDEAMPLAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCTATRAACFGLLIGDVVNSPETGAPYVVVESTIR
Ga0137386_1101010123300012351Vadose Zone SoilMWKRVKKDGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGSFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPEAGAPHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSG
Ga0137371_1123907113300012356Vadose Zone SoilMWKRVKKQRVQGRVARFRVPGGAEPDAARAPDEAMPLAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCAAPRETCFGLLAGSPYRAPETGLPYVVVESTIRLPGVIGDDAKAALMQGWV
Ga0137390_1096581913300012363Vadose Zone SoilMWKRVKKEVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIEGAAERDAGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGAPYVVVESTIRLPGSPGDDAKTVLVQGWVVAQD
Ga0134047_100536013300012380Grasslands SoilMWKRVKNGAQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCVATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDV
Ga0134056_101866013300012397Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAEPDEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPESGASHVVVESTIRLPASPDDDAKTVLVQ
Ga0137397_1058358023300012685Vadose Zone SoilMWKRVKNGVQGRVARFRVPGGAEPAEASPDPEPDDRGHDERPMPIAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAK
Ga0137394_1004729413300012922Vadose Zone SoilMWKRVKNGVQGRVARFRVPGGAEPAEASPDPEPDDRGHDERPMPIAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGG
Ga0137416_1050168523300012927Vadose Zone SoilMWQRVKSGVQGRVARFRVPGGLARAEAGADPPPDDPGSDRQIPTAASILWKPIDGAAEQDAGLPPIFITQRALAAVHDHCAATPETCFGLLTGNVFRSPETGTPYVVVESTIRLPGGTGDDAKAALMQGWVVAQDVVHRTGDQLVGWYRGRWSAETGL
Ga0137416_1196076613300012927Vadose Zone SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDV
Ga0137407_1008215313300012930Vadose Zone SoilMWKRVKHRVQGRVARFRVPGGAEPAEADGDRQQEDPGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGDLLVG
Ga0137407_1009855213300012930Vadose Zone SoilMWKRVKNGVQGRVARFRVPGGAEPAEADGDRQQDGPGSDERPMPIAASILWKPIDGAAEPDAGLPPIFITQHALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGDLLVG
Ga0134078_1048508413300014157Grasslands SoilMWKRVKNGAQGRVVRFRVPGGAEPAEAGSDERPMPTAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPEAGAPHVVVESTIRLPASPDDDAKTV
Ga0134085_1001179943300015359Grasslands SoilMWKRVKNRVQGRVTRFRVPGGAAPAEPDAHRQADPVHDDRSMPIAASILWKPIDGAAEADAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRK
Ga0134085_1024310123300015359Grasslands SoilMWKRVKKQQVQGRVARFRVPGGAEPDAARAPDDAMPLAASILWQPIDAAPGQDAELPVFISQRALTAIHDHCAAGHETCFGLLTGRLVRTADTGASYLVVESTIRLPGG
Ga0184618_1009659013300018071Groundwater SedimentMWKRVKNGVQGRVARFRVPGGAEPAEADGDRQQDDHGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATRAACFGLLIGDVVNAPETGAPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKS
Ga0184618_1050362913300018071Groundwater SedimentPEADTRDEADEPGYRDRPMPVAASILWQPADGAAPQGTLTIPIFITQRALAAVHDHCAATREVCFGLLTGNLFRSPDTGAPYLVVESTIRLPAGAADDAKTALVQGWVVAQDVLRRTDDQLVGWYRGGAAATATLSPAEAEMHAALFAQPWQVAVAVDAGGDASAGSV
Ga0066655_1002281443300018431Grasslands SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQADPVYDDRSMPIAASILWKPIDGAAEEGAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLR
Ga0066667_1051786113300018433Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDQRPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAGCFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGG
Ga0137408_101632913300019789Vadose Zone SoilMWKRVKTGVQGRVARFRVPGGAELVEAGADPQPAEAGYDDRPMPVAASILWKPIDGPADQDAELPIFITQRALAAVHDHCATTRETCFGLLTGNLFCSPDTSAPYVVVESTIRLPGGVGEDAKAALMQGWVVAQHVVHRTGDQLVGWYRGRWSAETGLAPAE
Ga0179594_1010353213300020170Vadose Zone SoilMWTRVKSGGEGRVVRFRVPAGAELAETSGNPKPDAAAGHDARPMPVAASILWKPIDGAAEQDAGLPIFITQRALTAVHDHSAATREPCFGLLTGNVFHASDTGTPYVVVESTIRLPGGTGDDAKAALMQGWVVAQ
Ga0137417_111503423300024330Vadose Zone SoilMWKRVKTGVQGRVARFRVPGGAELVEAGADPPPAEAGQDDRPMPIAASILWKPIDGPADEDAELPIFITQRALAAVHDHCATTRETCFGLLTGNLFRSPDTSAPYVVVESTIRLPGGVGEDATAA
Ga0137417_115434813300024330Vadose Zone SoilMWKRVKTGVQGRVARFRVPGGAELVEAGADPQPAEAGHDDRLMPIAASILWKPIDGPADEDAELPIFITQRALAAVHDHCATTRETCFGLLTGNLFRSPDTSAPYVVVESTIRLPGGAGEDATAALMQGWVVAQDVVHRTGDQL
Ga0207653_1007424413300025885Corn, Switchgrass And Miscanthus RhizosphereMWKRVKKEVQGRVARFRIPGGAEPAEAGSDDRPMPIAASILWKPIEGAAERDTGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGAPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVL
Ga0207684_1056557623300025910Corn, Switchgrass And Miscanthus RhizosphereVARFRVPGGAKPAEADSSSDEREMPIAASILWKPIDGAAEQDAGFPVFITQRALAAVHDHCAATRAACFGLLVGDVVDSPETEAPYVVVESTIR
Ga0209237_102979013300026297Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAERADAGSDERPMPIAASIFWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIR
Ga0209237_118198513300026297Grasslands SoilMWKRVKTGVQGRVARFRVPGGAELVEAGADPQPAEAGYDDRPMPVAASILWKPIDGPADQDAELPIFITQRALAAVHDHCATTRETCFGLLTGNLFCSPDTSAPYVVVESTIRLPGGVGE
Ga0209469_109464013300026307SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDQRPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAGCFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQ
Ga0209469_114377323300026307SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQ
Ga0209761_121948713300026313Grasslands SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTV
Ga0209268_107900313300026314SoilMWKRVKVGVQGRVARFRIPGGAEPALADGGRQPDDPGYDVRPMPIAASILWKPIDAPPEQDAGLIPVFITQRALAAVHDHCATTRETCFGLLAGSPYRAPETGLPYVVV
Ga0209470_106166723300026324SoilMWKRVKKQQVQGRVARFRVPGGAEPDAARAPDEAMPIAASILWKPIDGAAEEDAGLPPIFITQRALAAVHDHCTATRAACFGLLTGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKS
Ga0209152_1037231323300026325SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVES
Ga0209266_121272023300026327SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVL
Ga0209266_128092523300026327SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVL
Ga0209802_132983113300026328SoilRWTWSSGSRMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQAAPVYDDRSMPIAASILWKPIDGAAGADPGLLPIFITQRALAAVHDHCAATRETCYGFLTGNVFRSPDGDPAYLVVESTIRLPGAIGDDAKAALMQGWVVAQDVVHRTGDQLVGWYRGRWSAETGL
Ga0209473_110021213300026330SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAGQDAGLFPVFITQRVLAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVE
Ga0209803_110935813300026332SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHCQADPVYDDRSMPIAASILWKPIDGAAEEGAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLV
Ga0209058_108697513300026536SoilMWKRVKKQWVQGRVARFRVPGGAEPDAARAPDDAMPLAASILWQPIDAAPGQDAELPVFISQRALTAIHDHCAAGHETCFGLLTGRLVRTADTGASYLVVE
Ga0209058_121433723300026536SoilMWKRVKSGVQGRVARFRVPGGAEPVEAASDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRVLAAVHEHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVL
Ga0209157_121064813300026537SoilMWKRVKNRVQGRVTRFRVPGGAAPAEADAHRQADPVYDDRSMPIAASILWKPIDGAAEADAGLPPIFITQRALAAVHDHCAATRAACFGLLIGDVVNSPETGAPYVVVESTIRLPGSPDEDAKTVLVQGWVVAQDVLRKSGDLLVGW
Ga0209076_122997423300027643Vadose Zone SoilMWKRVKTGVQGRVVRFRAPGGAELVEAGADDQAMPIAASILWKPIDGGAEQNAGFPVFITQRALAAVHDHCAATRAACFGLLVGDVVDSPETEAPYVVVES
Ga0209689_128293513300027748SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATTAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWY
Ga0209814_1009447213300027873Populus RhizosphereMWKRVKKEVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIEGAAERDTELFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGAPYVVIESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGGGEAALSPAEADAHRAFFV
Ga0209590_1060413713300027882Vadose Zone SoilMWKRVKNGVQGRVVRFRVPGGAEPAEAGSDERPMPIAASILWKPIEGAAEQDAGLFPVFITQRALAAVHDHCAATPAACFGLLIGDVVDSPETGASHVVVESTIRLPASPDDDAKTVLVQGWVVAQDVLRKSGDLLVGWYRGGGGEAALSPAEADAHRA
Ga0209590_1069971223300027882Vadose Zone SoilMWQRVKNGVQGRVARFRVPGGLAPAEAGADPQPDDPGSDRQMPIAASILWKPIDGAAEQDAGLPPIFITQRALAAVHDHCAATPETCFGLLTGNWFRSPETGTPYVVVESTIRLPGGTGDDAKAALMQGW
Ga0307312_1042168523300028828SoilMDGVQGRVARFRAPGAAPEADTRDEADEPGYRDRPMPVAASILWQPADGAAPQGTLTIPIFITQRALAAVHDHCAATREVCFGLLTGNLFRSPDTGAPYLVVESTIRLPAGADDAKTALVQGWVVAQDVLRRTDDQLVGWYRGGAAATATLSPAEAEMHA
Ga0307278_1035715123300028878SoilMDGVQGRVVRFRAPGVPEADTRDEADEPGYRDRPMPVAASILWQPADGAAPQGTLTIPIFITQRALAAVHDHCAATREVCFGLLTGNLFRSPDTGAPYLVVESTIRLPAGAADDAKTALVQGWVVAQDVLRRTDDQLVGWYRGGAAATAALSPA
Ga0307469_1008347313300031720Hardwood Forest SoilMWKRVKNGVQGRVARFRVPGGAEPAEAEGDRQQDDPGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVAQDALR
Ga0307469_1161332313300031720Hardwood Forest SoilMWKRVKNEVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIEGAAERDAGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGTPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGHLLVGWYRGGGGEAALSPAEADA
Ga0307473_1101967513300031820Hardwood Forest SoilMWKRVKNGVQGRVARFRVPGGAEPAEADGDHQQDDPGSDERPMPIAASILWKPIDGAAEPDAGLLPIFITQRALAAVHDHCAATHAACFGLLIGDVVNSPETGAPYIVVESTIRLPGSPDDDAKTVLVQGWVVAQDALRKSGDLLVGWYRGGGGDAALSPAEADAHRA
Ga0307472_10030470013300032205Hardwood Forest SoilMWKRVKREVQGRVARFRIPGGAEPAEAGSDERPMPIAASILWKPIEGAAERDAGLFPVFITQHALAAVHDHCAATGAACFGLLTGDVVDSPETGTPYVVVESTIRLPGSPDDDAKTVLVQGWVVAQDVLRKSGHLLVGWYRGGGGEAALSPAEADAHRAFF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.