Metagenome / Metatranscriptome Family F078542

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078542
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	57 residues
Representative Sequence	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTAL
Number of Associated Samples	100
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.78 %
% of genes near scaffold ends (potentially truncated)	97.41 %
% of genes from short scaffolds (< 2000 bps)	91.38 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.069 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.517 % of family members)
Environment Ontology (ENVO)	Unclassified (29.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.862 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.48% β-sheet: 0.00% Coil/Unstructured: 79.52%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13620	CarboxypepD_reg	6.90
PF03401	TctC	3.45
PF00903	Glyoxalase	3.45
PF00042	Globin	3.45
PF07859	Abhydrolase_3	2.59
PF02738	MoCoBD_1	2.59
PF01546	Peptidase_M20	1.72
PF00375	SDF	1.72
PF13646	HEAT_2	1.72
PF00535	Glycos_transf_2	1.72
PF00072	Response_reg	0.86
PF01796	OB_aCoA_assoc	0.86
PF12695	Abhydrolase_5	0.86
PF01416	PseudoU_synth_1	0.86
PF13354	Beta-lactamase2	0.86
PF02668	TauD	0.86
PF13398	Peptidase_M50B	0.86
PF00877	NLPC_P60	0.86
PF00248	Aldo_ket_red	0.86
PF03328	HpcH_HpaI	0.86
PF13673	Acetyltransf_10	0.86
PF14023	DUF4239	0.86
PF04828	GFA	0.86
PF06739	SBBP	0.86
PF13442	Cytochrome_CBB3	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1017	Hemoglobin-like flavoprotein	Energy production and conversion [C]	3.45
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.45
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	2.59
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	0.86
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.86
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1545	Uncharacterized OB-fold protein, contains Zn-ribbon domain	General function prediction only [R]	0.86
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.86
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.86
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	15.52 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.86 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.34 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.48 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.59 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.72 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.86 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.31 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.59 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.72 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.86 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.86 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.86 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.86 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.86 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.48 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.72 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.72 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.72 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.86 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	0.86 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.86 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.86 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.86 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.48 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.72 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.72 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.72 %
Deltaproteobacteria bacterium RBG_16_47_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_47_11	0.86 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.86 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.86 %
Stenotrophobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Stenotrophobium	0.86 %
Nitrosospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	0.86 %
Luteimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas	0.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.86 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.48 %
Granulicella sibirica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	1.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.72 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.72 %
Luteimonas granuli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas granuli	0.86 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.86 %
Stenotrophobium rhamnosiphilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Stenotrophobium → Stenotrophobium rhamnosiphilum	0.86 %
Nitrosospira multiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira multiformis	0.86 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.86 %
Deltaproteobacteria bacterium RBG_16_47_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_47_11	0.86 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.86 %
Betaproteobacteria bacterium GR16-43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004463\|Ga0063356_100226275	Not Available	2237	Open in IMG/M
3300005290\|Ga0065712_10737947	Not Available	533	Open in IMG/M
3300005353\|Ga0070669_100841232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300005364\|Ga0070673_100869093	Not Available	835	Open in IMG/M
3300005444\|Ga0070694_100190716	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300005446\|Ga0066686_10910193	Not Available	577	Open in IMG/M
3300005458\|Ga0070681_10123485	All Organisms → cellular organisms → Bacteria	2522	Open in IMG/M
3300005466\|Ga0070685_10666042	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300005468\|Ga0070707_100025415	All Organisms → cellular organisms → Bacteria → Proteobacteria	5618	Open in IMG/M
3300005530\|Ga0070679_101104709	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005545\|Ga0070695_100667886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	822	Open in IMG/M
3300005546\|Ga0070696_100606413	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300005549\|Ga0070704_101750469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300005591\|Ga0070761_10845384	Not Available	577	Open in IMG/M
3300005598\|Ga0066706_11029470	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300005617\|Ga0068859_101583199	Not Available	723	Open in IMG/M
3300005836\|Ga0074470_11082864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1849	Open in IMG/M
3300005889\|Ga0075290_1068140	Not Available	510	Open in IMG/M
3300006032\|Ga0066696_10347850	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300006058\|Ga0075432_10196685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300006755\|Ga0079222_12055452	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300006794\|Ga0066658_10527950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	642	Open in IMG/M
3300006846\|Ga0075430_100529884	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_47_11	972	Open in IMG/M
3300006852\|Ga0075433_10583851	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300006852\|Ga0075433_10816119	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300006871\|Ga0075434_100148659	All Organisms → cellular organisms → Bacteria	2362	Open in IMG/M
3300006881\|Ga0068865_100887913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300006881\|Ga0068865_101075946	Not Available	707	Open in IMG/M
3300006954\|Ga0079219_11768652	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300007076\|Ga0075435_100411057	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300009094\|Ga0111539_11269726	Not Available	855	Open in IMG/M
3300009100\|Ga0075418_11101896	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	860	Open in IMG/M
3300009100\|Ga0075418_11267837	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300009100\|Ga0075418_11283647	Not Available	794	Open in IMG/M
3300009147\|Ga0114129_11009725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300009156\|Ga0111538_10068864	All Organisms → cellular organisms → Bacteria → Proteobacteria	4506	Open in IMG/M
3300009156\|Ga0111538_10546202	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1469	Open in IMG/M
3300009156\|Ga0111538_10689822	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300009156\|Ga0111538_10869181	Not Available	1142	Open in IMG/M
3300009162\|Ga0075423_11747179	Not Available	670	Open in IMG/M
3300010043\|Ga0126380_11508706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium GR16-43	596	Open in IMG/M
3300010359\|Ga0126376_10544166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira multiformis	1085	Open in IMG/M
3300010362\|Ga0126377_11752611	Not Available	696	Open in IMG/M
3300010398\|Ga0126383_13057133	Not Available	546	Open in IMG/M
3300010399\|Ga0134127_12911640	Not Available	558	Open in IMG/M
3300010401\|Ga0134121_10217902	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300010403\|Ga0134123_11739862	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300011119\|Ga0105246_10159550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1717	Open in IMG/M
3300011423\|Ga0137436_1100969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300011434\|Ga0137464_1192981	Not Available	620	Open in IMG/M
3300011442\|Ga0137437_1157997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785	Open in IMG/M
3300012199\|Ga0137383_10121043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1909	Open in IMG/M
3300012203\|Ga0137399_11253735	Not Available	624	Open in IMG/M
3300012207\|Ga0137381_10880987	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300012232\|Ga0137435_1016681	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300012359\|Ga0137385_11326834	Not Available	582	Open in IMG/M
3300012485\|Ga0157325_1013292	Not Available	646	Open in IMG/M
3300012930\|Ga0137407_11514925	Not Available	638	Open in IMG/M
3300012944\|Ga0137410_10215993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1491	Open in IMG/M
3300012944\|Ga0137410_12082350	Not Available	506	Open in IMG/M
3300012958\|Ga0164299_10831291	Not Available	662	Open in IMG/M
3300012961\|Ga0164302_10699331	Not Available	751	Open in IMG/M
3300012971\|Ga0126369_12980311	Not Available	554	Open in IMG/M
3300013296\|Ga0157374_11084520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	821	Open in IMG/M
3300013297\|Ga0157378_11411908	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	739	Open in IMG/M
3300013297\|Ga0157378_11459671	Not Available	728	Open in IMG/M
3300013297\|Ga0157378_12486161	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300013307\|Ga0157372_12900979	Not Available	549	Open in IMG/M
3300014311\|Ga0075322_1206085	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300014968\|Ga0157379_10721165	Not Available	937	Open in IMG/M
3300014969\|Ga0157376_11110977	Not Available	817	Open in IMG/M
3300015241\|Ga0137418_10070094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3196	Open in IMG/M
3300015249\|Ga0180071_1038390	Not Available	686	Open in IMG/M
3300015371\|Ga0132258_12023617	Not Available	1449	Open in IMG/M
3300015373\|Ga0132257_101237159	Not Available	946	Open in IMG/M
3300016404\|Ga0182037_10539415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	983	Open in IMG/M
3300017943\|Ga0187819_10195673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1194	Open in IMG/M
3300018051\|Ga0184620_10024702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1529	Open in IMG/M
3300018073\|Ga0184624_10017224	All Organisms → cellular organisms → Bacteria	2639	Open in IMG/M
3300018076\|Ga0184609_10429965	Not Available	610	Open in IMG/M
3300018083\|Ga0184628_10024725	All Organisms → cellular organisms → Bacteria	2975	Open in IMG/M
3300018084\|Ga0184629_10539953	Not Available	602	Open in IMG/M
3300018433\|Ga0066667_10916940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300021078\|Ga0210381_10070859	Not Available	1087	Open in IMG/M
3300021082\|Ga0210380_10279106	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300021082\|Ga0210380_10605100	Not Available	503	Open in IMG/M
3300025904\|Ga0207647_10330769	Not Available	864	Open in IMG/M
3300025924\|Ga0207694_11564558	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	556	Open in IMG/M
3300025945\|Ga0207679_10793892	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	863	Open in IMG/M
3300026095\|Ga0207676_11186994	Not Available	756	Open in IMG/M
3300026296\|Ga0209235_1151505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300026320\|Ga0209131_1278664	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300026325\|Ga0209152_10180086	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300026467\|Ga0257154_1074774	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300026550\|Ga0209474_10266668	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300027907\|Ga0207428_10174740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas granuli	1625	Open in IMG/M
3300027907\|Ga0207428_10793095	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300027910\|Ga0209583_10412618	Not Available	646	Open in IMG/M
3300028381\|Ga0268264_11385395	Not Available	714	Open in IMG/M
3300028381\|Ga0268264_12579929	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	513	Open in IMG/M
3300028792\|Ga0307504_10064484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1084	Open in IMG/M
3300028800\|Ga0265338_10907330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Stenotrophobium → Stenotrophobium rhamnosiphilum	600	Open in IMG/M
3300031241\|Ga0265325_10547420	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300031720\|Ga0307469_11991491	Not Available	564	Open in IMG/M
3300031740\|Ga0307468_100276315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300031740\|Ga0307468_101039249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300031740\|Ga0307468_102403986	Not Available	514	Open in IMG/M
3300031912\|Ga0306921_11722978	Not Available	677	Open in IMG/M
3300031962\|Ga0307479_11989752	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300032076\|Ga0306924_11271188	All Organisms → cellular organisms → Bacteria → Acidobacteria	792	Open in IMG/M
3300032076\|Ga0306924_11401236	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300032122\|Ga0310895_10592198	Not Available	568	Open in IMG/M
3300032180\|Ga0307471_100963144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	1020	Open in IMG/M
3300032205\|Ga0307472_102499259	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300034659\|Ga0314780_119258	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.07%
Host-Associated	Host-Associated	37.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.28%
Plants	Host-Associated → Plants	37.93%
Aquatic	Environmental → Aquatic	13.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.59%
Sediment	Environmental → Aquatic → Sediment	10.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.34%
Freshwater	Environmental → Aquatic → Freshwater	3.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.34%
Loam	Environmental → Terrestrial → Soil → Loam	7.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.03%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.45%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015249	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293A_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_101474951	3300000363	Soil	MTLFRTVLFTSGVVLALSSGVAQSAQNASAGRPMMTLQMPATPEPARVTLNPRTTALI
Ga0063356_1002262751	3300004463	Arabidopsis Thaliana Rhizosphere	MTLFRTALLTSGLAVVLCGGAAQSAQNASANRPMMTLQMPATPEPARVTLNPRTTALIVLDYVEDICNS
Ga0065712_107379471	3300005290	Miscanthus Rhizosphere	MKLFRIVFMSGLALALCGGASEAPAAQAPGKMITLQMPATPDPARVTLDP
Ga0070669_1008412322	3300005353	Switchgrass Rhizosphere	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPRTTALI
Ga0070673_1008690932	3300005364	Switchgrass Rhizosphere	MTLSRTVLLMSGLALALLCGAAKAQPAMQGGKPMMTLQMPATPDPARVTLDPKTTALMVLDYVEEI
Ga0070694_1001907163	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTLSRTVLVTSGLTLALFCGATQAQPAGKPMMTLQMPATPDPARVTLDPKTTALIVLDYVEDIC
Ga0066686_109101932	3300005446	Soil	MTVFRTVLTSGLALALLSAAAEAQPPNRPSPKMITLQMPATPDPAHVTLDPKTTALI
Ga0070681_101234851	3300005458	Corn Rhizosphere	MKRFRTVLMSGLALALCGGASEAPAAQAPAKMIALQMPATPDPARVTLDPKTTALIVLDYVEDICNNQVTCKTKMLP
Ga0070685_106660422	3300005466	Switchgrass Rhizosphere	MKLFRTVFMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVT
Ga0070707_1000254155	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKLFRTVLMSGLALALCGEASEAPAAQAPAKMITLQMPATPDPARVTLDPKTT
Ga0070679_1011047091	3300005530	Corn Rhizosphere	MKRFRTVLMSGLALALCGGASEAPAAQAPAKMIALQMPATPDPARVTLDP
Ga0070695_1006678862	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MAQFRTVFLISGLALALCSGAAQAQPAGKPMRTLQMPAMPDPARVTLNPRTTALVVLDY
Ga0070696_1006064132	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLRTVLLTSGLAVAFASGAAELTAQAAPAPGGKMMTLQMPATPAPARVTLNPRTTALIVLDYVEDICNNQ
Ga0070704_1017504691	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKLFRTVLMSGLALALCGEASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALIVLDY
Ga0070761_108453842	3300005591	Soil	MTLFRTVLASSGIVLAFFSGAAEAQQNARAAGKMVTLQMPAIPDPARVTLDPKATALMVLDYVE*
Ga0066706_110294701	3300005598	Soil	MKLFRAVLMSGLALALCGGASDARAQAPAKMITLQMPATPDPARVTLDPKTTALIV
Ga0068859_1015831992	3300005617	Switchgrass Rhizosphere	MKLFRAVLMSGLALALCGGASEAPAAQAPAKMITLQMP
Ga0074470_110828643	3300005836	Sediment (Intertidal)	MTLFRTVLMTSGLAFALFCGAVQTQATSSAMQTLQMPVTPAPARVSLDPKTTALVVLDY
Ga0075290_10681401	3300005889	Rice Paddy Soil	MKLFRTVLMSGLALALCAAASEAPAAQAPAKTITLQMPATPDPARVTLDPKTTA
Ga0066696_103478501	3300006032	Soil	MKLFRTVLVTLALCGGVAEGPAAQAPPKMITLQMP
Ga0075432_101966851	3300006058	Populus Rhizosphere	MKLFRTVVMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLD
Ga0079222_120554522	3300006755	Agricultural Soil	MTLFRTVLLTSGIALALLNGGADAAQNARGSGKMITVQMPATPDPARVTLDPKTTALMVLDYVEDICNNQASCKS
Ga0066658_105279501	3300006794	Soil	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALIVLDY
Ga0075430_1005298841	3300006846	Populus Rhizosphere	MTPSRTVRLTSGLALALFGVAAQAQPAAQGDKPMMTLQMPVTPDPARVTLDPRTTALIVLDYVED
Ga0075433_105838511	3300006852	Populus Rhizosphere	MKLFRTVLMSGLALALCGEASEAPAAQAPAKMITLQMPATPDPARVTLDPKT
Ga0075433_108161191	3300006852	Populus Rhizosphere	MKLFRTVLMSGLALALCPGASEAPAAQAPAKMITLQMPATPDPARVTLDPK
Ga0075434_1001486594	3300006871	Populus Rhizosphere	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALIV
Ga0068865_1008879132	3300006881	Miscanthus Rhizosphere	MKRLRTVLMSGLAFALCGGASAAPAAQAPAKMITLQMPATPDPARVTLDP
Ga0068865_1010759462	3300006881	Miscanthus Rhizosphere	MKLLRAVLMSGLALALSGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALI
Ga0079219_117686522	3300006954	Agricultural Soil	MTLFRTVLLTSGVALALFSGAADAAQNARGSGKMITVQMPATPDPVRVTLDPKTTALMVLDYVEDICNNQASCKSKMLPAM
Ga0075435_1004110572	3300007076	Populus Rhizosphere	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPA
Ga0111539_112697262	3300009094	Populus Rhizosphere	MTLSRTVLVTSSLALALFCGAAQAQPAAQGGKPMITLQMPATPDPARVTLDPKTTALIVL
Ga0075418_111018962	3300009100	Populus Rhizosphere	MSGLALALGGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALIVLD
Ga0075418_112678372	3300009100	Populus Rhizosphere	MKLFRTVVMSGLALALCGGASEAPAAQAPAKMITL
Ga0075418_112836471	3300009100	Populus Rhizosphere	MTLLRTVLLTSGLAVAFASGEAELTAQAAPAPGGKMMTLQMPATPAPARVTLNPRTTALIVLDYVEDI
Ga0114129_110097252	3300009147	Populus Rhizosphere	MSGLALALCGGASEALAAQAPAKMITLQMPATPDPARVTLDPKTTALIVLDYVEDICN
Ga0111538_100688645	3300009156	Populus Rhizosphere	MGGLAVALSCGVADAQPANRPASKMITLQMPVTPDPARVTLDPKTTALIVLDYVEDICAK
Ga0111538_105462021	3300009156	Populus Rhizosphere	MKLFRTVLMSGLALTLGGGASEAPAAQAPAKMITLQMPATPDPAR
Ga0111538_106898221	3300009156	Populus Rhizosphere	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTT
Ga0111538_108691811	3300009156	Populus Rhizosphere	MKPFRTALISGLALAFGAGASEAPAAQAPAKMITLQMPATPDPAR
Ga0075423_117471791	3300009162	Populus Rhizosphere	MSPEGDSNMTLSRTVVFMSGLAVALSCGAAEAQPTDGAAPKMVTLQMPATPDPARVTLDPKSTALMVLDYVEDICNQQ
Ga0126380_115087062	3300010043	Tropical Forest Soil	MTLIRTVLVTSGLALALSSGAADTQAAQAPSGKMITLQMPATPDPARVTLDPK
Ga0126376_105441661	3300010359	Tropical Forest Soil	MTLFRTVLMSCLVLALLSAAAEAQQPNRPSPKMITLQMPATPDPAHVTLDPKTTAL
Ga0126377_117526112	3300010362	Tropical Forest Soil	MTLFRTVLLTSGLAIAIVGGSADGREAGNGKMQTVQMPATPD
Ga0126383_130571331	3300010398	Tropical Forest Soil	MTLFRAVLVSSGLVLTFFTGAAEAQQNARAAGKMVTLQMPAIPDPARVTLDPKTTALMVLDYVEPIC
Ga0134127_129116402	3300010399	Terrestrial Soil	MTLFRTVLLTSGLALALCGSVQAQAAERAPGKMMTLQMPATPDPVPVKLDPKTTALVVLDYVEDIC
Ga0134121_102179021	3300010401	Terrestrial Soil	MTLSRAVLVTSGLTLALFCGATQAQPAAQGGKPMMTLQMPATPDPARVTLDPKTTALIVLDYVEDICVKQ
Ga0134123_117398621	3300010403	Terrestrial Soil	MTLSRTVLQTSGLALALVCGAVHAQSGKPMMTLQMPATPDPARVTLDPKTTALIVLDF
Ga0105246_101595503	3300011119	Miscanthus Rhizosphere	MKLFRTVFMSGLALALCGGASAAPAAQAPAKMITLQMPAT
Ga0137436_11009692	3300011423	Soil	MKLFRTVLMSGLALALCGGASEALAAQAPAKMMTLQMPATPD
Ga0137464_11929811	3300011434	Soil	MTLFRTVLLTSGVALALYGGMAQSAQNAPAGKMMSLQMPATPEPARVTLNPRTTALVVLDYVEDICNSQPSCKAKM
Ga0137437_11579971	3300011442	Soil	MTMFRTVLLTSGIAVALCGGVAQSAQNAPAGKMMTLQMPATPEPARVTLDPKTTALIVLD
Ga0137383_101210433	3300012199	Vadose Zone Soil	MTLFRTVLVSSGLVLAFFSGAAEAQQNVRAAGKMVTFQMPATPDPARVTLDPKTTALMVLDYVEPICNAQPSCKDKMLPAMTPFM
Ga0137399_112537352	3300012203	Vadose Zone Soil	MKLFRTVVMSGLALALCAGASEAPAAQAPAKMTTLQMPATP
Ga0137381_108809872	3300012207	Vadose Zone Soil	MTLFRTVLLTSGLALALSSGVVQTQAAQRAPGKMQTVQMPATPDPARVTLDPK
Ga0137435_10166811	3300012232	Soil	MTLSRTVLVTSGLALALFCGATQAQPAAQGGKPMMTLQMPATPDPARVTLDPKTTA
Ga0137385_113268342	3300012359	Vadose Zone Soil	MTLFRTVLVSSGLVLAFYGAAEAQENVRAAGKMVTLQMPATPDPARVTLDPKTTALMVLD
Ga0157325_10132922	3300012485	Arabidopsis Rhizosphere	MKLFRTVLVSGLVLALCGGASAAPAAQAPAKMITLQMPATPDPARVTLDPKT
Ga0137407_115149252	3300012930	Vadose Zone Soil	MTLFRTVLVSSGLVLAFYGAAEAQENVRAAGKMVTLQMPAIPEPARVTIDPKTTALMVLDYVEP
Ga0137410_102159931	3300012944	Vadose Zone Soil	MTLFRTVLLTSGVALALLNGTADAAQNARASGKMITLQMPATPDPARVTLDPKTTALM
Ga0137410_120823501	3300012944	Vadose Zone Soil	MKLFRTVLMSGLALALCAGASEAPAAQAPAKMITLQMPATPDPARVTLDPK
Ga0164299_108312912	3300012958	Soil	MTLFRTVLLTSGIALALASGVGGFAAERAGGKMITLQMPATPEPARVTLDPKTTALVVLDYVEDIC
Ga0164302_106993311	3300012961	Soil	MTLSRTVVLMSGLAVALSCGAAEAQPANGAVPKMVTLQMPAIPDPARVTLDPKTTALMVLDYVE
Ga0126369_129803112	3300012971	Tropical Forest Soil	MTLFRAVLVSSGLVLTFVTGAAEAQQNARPAGKMVTLQMPAIPDPARVTLDPKTTALMVLDYVEPICN
Ga0157374_110845202	3300013296	Miscanthus Rhizosphere	MMLHHIAVVTSGLVFALSSGAAQAQPSAEAGKTLTLQMPTLPDPARVTLKPATTALLVLDYVEDICA
Ga0157378_114119082	3300013297	Miscanthus Rhizosphere	MKLFRTVLMSGLTLALCPGASEAPAAQAPAKMITLQMPATPDPARVTL
Ga0157378_114596711	3300013297	Miscanthus Rhizosphere	MNLFRTVVMSGVALALCAGASETPAAQAPAKMITVQMPATPDPARVTLDPKTTALIVLDYVE
Ga0157378_124861611	3300013297	Miscanthus Rhizosphere	MRLSRTILLTSGLALALLCGSAQAQPAAQGGRPMMTLQMPATPDPARVALDPKTTAL
Ga0157372_129009792	3300013307	Corn Rhizosphere	MTLFRTALLSGLAVALSCAMIEAQAREAGSGKMMTVQMPATPDPAPVKLDPKTT
Ga0075322_12060851	3300014311	Natural And Restored Wetlands	MKLFRTVLMNGLALALCVGASEAPAAQAPAKMITVQMPATPDP
Ga0157379_107211651	3300014968	Switchgrass Rhizosphere	MKLFRAVLMSGLALALCGGASEAPAAQAPAKMITL
Ga0157376_111109771	3300014969	Miscanthus Rhizosphere	MKLFRIVLMSGLALALCGGASEAPAAQAPAKMITLQMPAT
Ga0137418_100700941	3300015241	Vadose Zone Soil	MTLFRTVLLTSGLALALSSGAAQTQAAQRAAGKMQTVQMPATPDPARVTLDP
Ga0180071_10383902	3300015249	Soil	MTLYRTALLTSGLAVVLCGGAAQSAQTASANRPMMTLQMPATPEPARVTLNPRTTALMVLDYVEDI
Ga0132258_120236174	3300015371	Arabidopsis Rhizosphere	MKLFRIVLMSGLVLALCGGASEAPAAQAPAKMITLQMPATPDP
Ga0132257_1012371591	3300015373	Arabidopsis Rhizosphere	MKLFRIVLMSGLPLAFCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTAL
Ga0182037_105394153	3300016404	Soil	MTLFHTVLVSSSLVLVFFGGAAEAQQNGRAAGKMVTFQMPATPDPARVTLDPKTTALIVLDYVEPIC
Ga0187819_101956732	3300017943	Freshwater Sediment	MTLFRTVLVSSGLVLAFFSGAAEAQQNARAAGKMVILQMPAIPDPARVTLDPKTTALMVLDYVEP
Ga0184620_100247021	3300018051	Groundwater Sediment	MTLSRTVLLTSGLALALFCGAAQAQPAAQGGKPMMTLQMPATPDPARVTLDPKTTA
Ga0184624_100172244	3300018073	Groundwater Sediment	MTLSRTVVLMSGLAVALSCGAAEAQPANGAVPKMVTLQMPAIPDPARVTLDPKTTALMVLDYVEDIC
Ga0184609_104299651	3300018076	Groundwater Sediment	MTLSRTVVLMSGLAVALSCGAVEAQLANGAVPKMVTLQMPAIPDPARVTLDPKTTALMVLDYV
Ga0184628_100247253	3300018083	Groundwater Sediment	MKLFRTVFMSGLALALCGGASEAPAAQAPAKMIALQMPATPDPARVTLDPKTTALIVLDYVEDICNNQVSCKTK
Ga0184629_105399531	3300018084	Groundwater Sediment	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPTTPDPARVTLDPKTTALIVLDYVEDICNNQV
Ga0066667_109169401	3300018433	Grasslands Soil	MKLFRTVLMSGLAVALCGASEAPAAQAPAKMITLQMPATPDPAHVTLDPKTTALIVLDYV
Ga0210381_100708591	3300021078	Groundwater Sediment	MTLSRTVLLTSGLALALFCGAAQAQPAAQGGKPMMTLQMPATPEPARVTLDPKTTALIVLDYVEDICNS
Ga0210380_102791062	3300021082	Groundwater Sediment	MKPFRTVLMSGLALALCGGASEAPAAQAPAKMIALQMPATPDPA
Ga0210380_106051001	3300021082	Groundwater Sediment	MTFSRTVLVTSGLALALFCGATQAQPAAQGGKPMMTLQMPATPDPARVTLDPKTTALI
Ga0207647_103307691	3300025904	Corn Rhizosphere	MKLFRAVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPA
Ga0207694_115645581	3300025924	Corn Rhizosphere	MKLFRTVLMSGLALALCPGAYEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALI
Ga0207679_107938922	3300025945	Corn Rhizosphere	MKLFRHVLMSGLAFALCGGASEAPAAQAPAKMITLQMPATPDPARVTL
Ga0207676_111869942	3300026095	Switchgrass Rhizosphere	MKLFRAVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDP
Ga0209235_11515051	3300026296	Grasslands Soil	MTVFRTVLTSGLALALLSAAAEAQPPNRPSPKMITLQMPATPDPAHVTLD
Ga0209131_12786641	3300026320	Grasslands Soil	MTLFRTVLLTSGLALAFCAGAAQAAPAGGGKMVTLQMPATPDPARVALDPKTTALMVLDY
Ga0209152_101800861	3300026325	Soil	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITL
Ga0257154_10747741	3300026467	Soil	MTLFRTVLVSSGLVLAFVSGAAEAQQNVGAAGKMMTLQMPAIPEPARVTLDPKTTALMVLDYVEPICNAQ
Ga0209474_102666682	3300026550	Soil	MKLFRTVLVTLALCGGVAEGPAAQAPPKMITLQMPATPDPARVTLDPKTTALIVLDYVED
Ga0207428_101747404	3300027907	Populus Rhizosphere	MTLFRTVLLTSGLAVAFASGEAELTAQAAPAPGGKMMTLQMPATPAPARVTLNPRTTALIVLDYVEDICNN
Ga0207428_107930952	3300027907	Populus Rhizosphere	MALALFCGAAQAQPAAQGGKPMMTLQMPATPDPARVTLDPKTTALMVLDFVEPIC
Ga0209583_104126182	3300027910	Watersheds	MTLFRTVLLTSGLALALSSGVVQTQAAQRAPGKMQTVQMPATPDPARVTLDPKTTALM
Ga0268264_113853952	3300028381	Switchgrass Rhizosphere	MKLFRAVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPK
Ga0268264_125799291	3300028381	Switchgrass Rhizosphere	MTLFRTVLMSGLTLALTSAAPLYAQAAAAERAPAKMITLQMPARPDPAPVTLDPK
Ga0307504_100644841	3300028792	Soil	MKLFRTVLMSGLALALCAGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTA
Ga0265338_109073302	3300028800	Rhizosphere	MTLNRTILLTSGIVLALSSAAVLTQAAGREAPGKMQTVQMPATPDPARVTLDPKTTALVVLDYVEDICNTQ
Ga0265325_105474201	3300031241	Rhizosphere	MTLFRTVLLTSGLALALCGGAAQAEAAPAAGKMMTVQMPATPDPARVTLDPKTTALVVLDYVEDICNSQPSCTGKMLPAM
Ga0307469_119914911	3300031720	Hardwood Forest Soil	MTLFRTVLTSGLVLALLSAVAEAQPPNRPAPKMITLQMPATPDPAHVTLDPKTTAL
Ga0307468_1002763151	3300031740	Hardwood Forest Soil	MKLFRIVVMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPA
Ga0307468_1010392491	3300031740	Hardwood Forest Soil	MKLLRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPAT
Ga0307468_1024039862	3300031740	Hardwood Forest Soil	MKLFRTVLVGGLALALCGGAFEATAAQAPAKMITLQMPATPGPARVTLDPRTTALMVLDYVEDI
Ga0306921_117229782	3300031912	Soil	MTLYHTVLLTSGLVLALCGAAQAQPANRPTGKMTTLQMPAIPDPVRVTLDPKTTALLVLDYV
Ga0307479_119897522	3300031962	Hardwood Forest Soil	MKLFHTVLLTSGLALGLCAGAEARDAPDGKMMTLQMPATPEPAAVKLDPKTT
Ga0306924_112711881	3300032076	Soil	MTVFRTVFLTSGLAVALMSGAANGREAATGKMMTLQMPATPEPARVTLDPKTTALVVLDYVE
Ga0306924_114012361	3300032076	Soil	MTLYHTVLLTSGLVLALCGAAQAQPANRPAGKMTTLQVPAIPDPVRVTLDPKTTALLVLDYVEGICNAQPKCK
Ga0310895_105921981	3300032122	Soil	MKLLRAVLMSGLALALSGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTALIVLDYVEDICN
Ga0307471_1009631441	3300032180	Hardwood Forest Soil	MTLSRTVVFMSGLAVALSCGAAEAQPTDGAAPKMVTLQMPATPDPARVTLDPKSI
Ga0307472_1024992591	3300032205	Hardwood Forest Soil	MKLFRTVLMSGLALALCGGASEAPAAQAPAKMITLQMPATPDPARVTLDPKTTAL
Ga0314780_119258_3_209	3300034659	Soil	MTLFRTVLVTSGLVAALCGGAAQSAQNASSGKMISLQMPATPEPARVTLNPRTTALIVLDYVEDICNNQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078542

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences