Metagenome / Metatranscriptome Family F078550

Basic Information
Family ID	F078550
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	42 residues
Representative Sequence	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Number of Associated Samples	91
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.78 %
% of genes near scaffold ends (potentially truncated)	35.34 %
% of genes from short scaffolds (< 2000 bps)	80.17 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (97.414 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (32.759 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.379 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.19% β-sheet: 0.00% Coil/Unstructured: 73.81%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13360	PQQ_2	30.17
PF12706	Lactamase_B_2	26.72
PF01011	PQQ	6.03
PF03070	TENA_THI-4	6.03
PF13570	PQQ_3	3.45
PF05402	PqqD	1.72
PF13186	SPASM	0.86
PF01566	Nramp	0.86
PF08038	Tom7	0.86
PF13649	Methyltransf_25	0.86
PF13298	LigD_N	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.41 %
Unclassified	root	N/A	1.72 %
Viruses	superkingdom	All Organisms → Viruses	0.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.41 %
Unclassified	root	N/A	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	87.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.03 %
Unclassified	root	N/A	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	85.34 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6.03 %
Unclassified	root	N/A	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	60.34 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	6.03 %
Unclassified	root	N/A	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	18.10 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	6.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.45 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.72 %
Unclassified	root	N/A	1.72 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.86 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	18.10 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	6.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.45 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.72 %
Unclassified	root	N/A	1.72 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.86 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	16.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	6.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.45 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.72 %
Unclassified	root	N/A	1.72 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.86 %
Allosalinactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia acidicola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	16.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	6.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.45 %
Streptomyces aurantiacus group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group	1.72 %
Unclassified	root	N/A	1.72 %
Allosalinactinospora lopnorensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora → Allosalinactinospora lopnorensis	0.86 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia acidicola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	16.38 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	6.03 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.45 %
Streptomyces aurantiacus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces aurantiacus	1.72 %
Unclassified	root	N/A	1.72 %
Allosalinactinospora lopnorensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora → Allosalinactinospora lopnorensis	0.86 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10060963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1571	Open in IMG/M
3300004121\|Ga0058882_1015185	All Organisms → Viruses → Predicted Viral	1943	Open in IMG/M
3300004799\|Ga0058863_10156491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300004799\|Ga0058863_10156997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	680	Open in IMG/M
3300005366\|Ga0070659_100802401	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	819	Open in IMG/M
3300005437\|Ga0070710_10182099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1316	Open in IMG/M
3300005437\|Ga0070710_11161957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300005524\|Ga0070737_10006480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10718	Open in IMG/M
3300005530\|Ga0070679_100182986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2067	Open in IMG/M
3300005535\|Ga0070684_100156172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2069	Open in IMG/M
3300005564\|Ga0070664_101828287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	576	Open in IMG/M
3300005591\|Ga0070761_10574145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	700	Open in IMG/M
3300006028\|Ga0070717_11786900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	556	Open in IMG/M
3300006755\|Ga0079222_11180150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	683	Open in IMG/M
3300006954\|Ga0079219_10615923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	799	Open in IMG/M
3300007076\|Ga0075435_101840593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300009143\|Ga0099792_10228207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300010049\|Ga0123356_11025067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	995	Open in IMG/M
3300010147\|Ga0126319_1498644	All Organisms → cellular organisms → Bacteria	3025	Open in IMG/M
3300010162\|Ga0131853_10593976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	956	Open in IMG/M
3300010366\|Ga0126379_13133177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
3300011120\|Ga0150983_13095418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1869	Open in IMG/M
3300011120\|Ga0150983_13097980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300011120\|Ga0150983_13490673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2999	Open in IMG/M
3300011120\|Ga0150983_13893649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300011120\|Ga0150983_15152976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	561	Open in IMG/M
3300011332\|Ga0126317_10797128	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300011332\|Ga0126317_10828199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3305	Open in IMG/M
3300011332\|Ga0126317_10999220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1877	Open in IMG/M
3300011332\|Ga0126317_11035747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3281	Open in IMG/M
3300011411\|Ga0153933_1064521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300012210\|Ga0137378_11870948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300012212\|Ga0150985_114638038	Not Available	587	Open in IMG/M
3300012357\|Ga0137384_11564975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300012469\|Ga0150984_101839813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	1023	Open in IMG/M
3300012469\|Ga0150984_118757483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1561	Open in IMG/M
3300012924\|Ga0137413_10187238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1381	Open in IMG/M
3300013043\|Ga0154018_116725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2301	Open in IMG/M
3300013059\|Ga0154012_138114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces aurantiacus	618	Open in IMG/M
3300016387\|Ga0182040_11385753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300018007\|Ga0187805_10208527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	893	Open in IMG/M
3300019164\|Ga0184582_104297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300019185\|Ga0184587_107522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	624	Open in IMG/M
3300019187\|Ga0184584_125348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	751	Open in IMG/M
3300019189\|Ga0184585_108801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	511	Open in IMG/M
3300019190\|Ga0184600_112443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	693	Open in IMG/M
3300020070\|Ga0206356_11108548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces aurantiacus group → Streptomyces aurantiacus	1052	Open in IMG/M
3300020071\|Ga0206348_108127	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300020076\|Ga0206355_1337058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	539	Open in IMG/M
3300020076\|Ga0206355_1403164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300020076\|Ga0206355_1631712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	1050	Open in IMG/M
3300020078\|Ga0206352_10710390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	509	Open in IMG/M
3300020080\|Ga0206350_11617439	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	671	Open in IMG/M
3300020583\|Ga0210401_10132264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2337	Open in IMG/M
3300021151\|Ga0179584_1495791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1085	Open in IMG/M
3300021180\|Ga0210396_10483690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1084	Open in IMG/M
3300021180\|Ga0210396_11636563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	525	Open in IMG/M
3300021286\|Ga0179583_1125744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1585	Open in IMG/M
3300021315\|Ga0179958_1130100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	762	Open in IMG/M
3300021402\|Ga0210385_10013120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5107	Open in IMG/M
3300021402\|Ga0210385_10013981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4960	Open in IMG/M
3300021404\|Ga0210389_10000164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	67749	Open in IMG/M
3300021406\|Ga0210386_10892281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300021475\|Ga0210392_10738690	All Organisms → cellular organisms → Bacteria → Terrabacteria group	734	Open in IMG/M
3300022498\|Ga0242644_1046177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300022509\|Ga0242649_1050676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300022513\|Ga0242667_1000106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3135	Open in IMG/M
3300022513\|Ga0242667_1037339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300022513\|Ga0242667_1047527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	538	Open in IMG/M
3300022523\|Ga0242663_1047403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	747	Open in IMG/M
3300022525\|Ga0242656_1004857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	1598	Open in IMG/M
3300022528\|Ga0242669_1016694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	1021	Open in IMG/M
3300022528\|Ga0242669_1082384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	599	Open in IMG/M
3300022531\|Ga0242660_1237665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300022532\|Ga0242655_10003012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2625	Open in IMG/M
3300022708\|Ga0242670_1034371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	668	Open in IMG/M
3300022712\|Ga0242653_1093214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	544	Open in IMG/M
3300025898\|Ga0207692_10840018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300025904\|Ga0207647_10047837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	2658	Open in IMG/M
3300025906\|Ga0207699_11348944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	528	Open in IMG/M
3300025921\|Ga0207652_10253584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1587	Open in IMG/M
3300025929\|Ga0207664_11394649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300025939\|Ga0207665_10245401	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300025949\|Ga0207667_11300195	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	704	Open in IMG/M
3300025981\|Ga0207640_10998318	All Organisms → cellular organisms → Bacteria → Terrabacteria group	736	Open in IMG/M
3300026555\|Ga0179593_1166130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2922	Open in IMG/M
3300027775\|Ga0209177_10443109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	530	Open in IMG/M
3300027903\|Ga0209488_10843848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300029701\|Ga0222748_1060364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300030531\|Ga0210274_1377408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	614	Open in IMG/M
3300030573\|Ga0210272_1145321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300030598\|Ga0210287_1235660	All Organisms → cellular organisms → Bacteria → Terrabacteria group	517	Open in IMG/M
3300030836\|Ga0265767_105471	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	771	Open in IMG/M
3300030863\|Ga0265766_1006394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	771	Open in IMG/M
3300030923\|Ga0138296_1581146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	866	Open in IMG/M
3300031015\|Ga0138298_1338160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300031057\|Ga0170834_100029794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300031128\|Ga0170823_14056375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300031231\|Ga0170824_111270639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300031474\|Ga0170818_104525666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1831	Open in IMG/M
3300031474\|Ga0170818_108372202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300032008\|Ga0318562_10240503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1051	Open in IMG/M
3300032515\|Ga0348332_12386859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300032515\|Ga0348332_14105014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1260	Open in IMG/M
3300032770\|Ga0335085_10447549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1487	Open in IMG/M
3300032895\|Ga0335074_10221567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acidicola	2270	Open in IMG/M
3300032895\|Ga0335074_10314926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1774	Open in IMG/M
3300032895\|Ga0335074_10804464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora → Allosalinactinospora lopnorensis	876	Open in IMG/M
3300032896\|Ga0335075_10016536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	11006	Open in IMG/M
3300032896\|Ga0335075_10129660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3208	Open in IMG/M
3300032896\|Ga0335075_10454575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1332	Open in IMG/M
3300032896\|Ga0335075_11401999	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	589	Open in IMG/M
3300032898\|Ga0335072_10059951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5059	Open in IMG/M
3300032898\|Ga0335072_10081669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4197	Open in IMG/M
3300033134\|Ga0335073_10079659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4281	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.93%
Host-Associated	Host-Associated	12.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Plants	Host-Associated → Plants	7.76%
Aquatic	Environmental → Aquatic	5.17%
Human	Host-Associated → Human	1.72%
Arthropoda	Host-Associated → Arthropoda	1.72%
Fungi	Host-Associated → Fungi	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Freshwater	Environmental → Aquatic → Freshwater	5.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.45%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.72%
Digestive System	Host-Associated → Human → Digestive System	1.72%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.72%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.03%
Loam	Environmental → Terrestrial → Soil → Loam	15.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.72%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.72%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.28%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.72%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.72%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.17%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.59%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.72%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.72%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013043	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013059	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300019164	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019185	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019187	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019190	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020071	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021286	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021315	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030531	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030573	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO036SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030586	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030598	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE048SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030836	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030863	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078550

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100609632	3300001867	Forest Soil	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWM*
Ga0058882_10151851	3300004121	Forest Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWM*
Ga0058863_101564912	3300004799	Host-Associated	PRDRQRKEVTAMDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWQDQDWM*
Ga0058863_101569972	3300004799	Host-Associated	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWQDQDWM*
Ga0070659_1008024011	3300005366	Corn Rhizosphere	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGTWKDQDWM*
Ga0070710_101820992	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VTTVDRERVIPRPQRDVWEAPLAEEIRVSPECSAYMGAWKDEDWM*
Ga0070710_111619572	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RERVIHQPQGDVWETPLAEEIRVSPECSAYMGAWKDQDWM*
Ga0070737_1000648012	3300005524	Surface Soil	VERERVARRPQGDVWETPLAEEIRVSPEACAYMGAWKDQDWI*
Ga0070679_1001829862	3300005530	Corn Rhizosphere	VTAKDREGVNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM*
Ga0070684_1001561722	3300005535	Corn Rhizosphere	VTAKDRERVNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM*
Ga0070664_1018282872	3300005564	Corn Rhizosphere	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWQDQ
Ga0070761_105741451	3300005591	Soil	MDREDFVPQRQWETPEAQEIGVSAECSAYMGVWQDKDWD*
Ga0070717_117869001	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDRENTVHRPQEHVWETPLAEEIRVSPECSAYMGAWQDQDWM*
Ga0079222_111801502	3300006755	Agricultural Soil	MDREHTGNRPQEHVWETPLAEEIRVSPECSAYMGAWQDQDWM*
Ga0079219_106159231	3300006954	Agricultural Soil	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWKDQDWM*
Ga0075435_1018405932	3300007076	Populus Rhizosphere	DRQRKEVTAMDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWQDQDWM*
Ga0099792_102282072	3300009143	Vadose Zone Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWM*
Ga0123356_110250671	3300010049	Termite Gut	PVTAVDRERVIQRPQGDVWETPLAEEIRVSPEACAYMGAWQDQDWM*
Ga0126319_14986443	3300010147	Soil	MDREVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWI*
Ga0131853_105939763	3300010162	Termite Gut	VTAVDRERVIQRPQGDVWETPLAEEIRVSPEACAYMGAWKDQDWM*
Ga0126379_131331772	3300010366	Tropical Forest Soil	VDREHVDPRPQGNAWETPLAEEIRVSPEACAYMGAW
Ga0150983_130954182	3300011120	Forest Soil	VTAEDRERVIHRPKGEVWETPLAEEIRVSPECSAYMGAWTDQDWM*
Ga0150983_130979802	3300011120	Forest Soil	MDREHNVHRPEEHVWETPLAEEIRISPEACAYMGAWKDQDWM*
Ga0150983_134906733	3300011120	Forest Soil	VTSEDRDRVVLRPQGDVWETPLAEEIRVSPECSAYMGAWKDQDWM*
Ga0150983_138936492	3300011120	Forest Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWLDQDWM*
Ga0150983_151529761	3300011120	Forest Soil	MDREHGAHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWM*
Ga0126317_107971281	3300011332	Soil	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGA
Ga0126317_108281993	3300011332	Soil	VTAEDRERVIRRPQGEVWETPLAEEIRVSPECSAYMGAWTDQDWM*
Ga0126317_109992202	3300011332	Soil	MDREHATHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWM*
Ga0126317_110357473	3300011332	Soil	VTAEDRERIIPRPQGDMWETPLAEEIRVSPECSAYMGAWKDQDWM*
Ga0153933_10645212	3300011411	Attine Ant Fungus Gardens	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWMDEDWM*
Ga0137378_118709482	3300012210	Vadose Zone Soil	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWM*
Ga0150985_1146380381	3300012212	Avena Fatua Rhizosphere	RPQVNAWETPLAEVIRVSAEASAYMGAREDQDWL*
Ga0137384_115649751	3300012357	Vadose Zone Soil	HVVHRPQEHVWETPLAEEIRVSPEACAYMGAWKEQDWI*
Ga0150984_1018398132	3300012469	Avena Fatua Rhizosphere	VERERVVPRPQVNAWETPLAEVIRVSAEASAYMGAREDQDWL*
Ga0150984_1187574832	3300012469	Avena Fatua Rhizosphere	MDRQHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWEDQDWM*
Ga0137413_101872382	3300012924	Vadose Zone Soil	MDREHAVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWM*
Ga0154018_1167253	3300013043	Corn, Switchgrass And Miscanthus Rhizosphere	VTAKDREGVNPRLQGGVWETPLAEEIRVSPECSAY
Ga0154012_1381142	3300013059	Corn, Switchgrass And Miscanthus Rhizosphere	VNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM*
Ga0182040_113857531	3300016387	Soil	EAVDRERVVPPHGDVWETPFAEEIRVSSEASAYMGTWKDQDWM
Ga0187805_102085272	3300018007	Freshwater Sediment	MDREHTVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0184582_1042972	3300019164	Soil	MDREDFVPRPQRHVWETPEAQEIGVSAECSAYMGVWKDQDWD
Ga0184587_1075221	3300019185	Soil	MDRQHAVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0184584_1253482	3300019187	Soil	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWMD
Ga0184585_1088011	3300019189	Soil	MDREDFVPRPQRHVWETPEAQEIGVSAECSAYMGVWQDKDWD
Ga0184600_1124431	3300019190	Soil	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWI
Ga0206356_111085482	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	PRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM
Ga0206348_1081271	3300020071	Corn, Switchgrass And Miscanthus Rhizosphere	VTAKDREGVNPRLQGGVWETPLAEEIRVSPECSAYMGAWKDQDWM
Ga0206355_13370582	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	VNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM
Ga0206355_14031641	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	VTAKDRERVNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM
Ga0206355_16317122	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	VTVVDREKIVPRPQRDVWETPLAEEIRVSPECSAYMGAWK
Ga0206352_107103902	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	VTAEDRERVIRQPRGDVWETPLAEEIRVSPECSAYMGAWKD
Ga0206350_116174392	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	VTAVDRERVIPRPQGDVWEAPLAEEIRVSPECSAYMGAWKDEDW
Ga0210401_101322642	3300020583	Soil	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWI
Ga0179584_14957912	3300021151	Vadose Zone Soil	MDREVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWI
Ga0210396_104836902	3300021180	Soil	VHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWT
Ga0210396_116365632	3300021180	Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWT
Ga0179583_11257442	3300021286	Vadose Zone Soil	MDREHAVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWM
Ga0179958_11301001	3300021315	Vadose Zone Soil	MDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0210385_100131204	3300021402	Soil	MDREDFVPRPQRQVWETPEAQEIGVSAECSAYMGVWKDKDWD
Ga0210385_100139812	3300021402	Soil	MDREHGAHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWM
Ga0210389_1000016445	3300021404	Soil	MDREHVMHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0210386_108922812	3300021406	Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWLDQDWM
Ga0210392_107386901	3300021475	Soil	MDREVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0242644_10461771	3300022498	Soil	MDREHTVHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWT
Ga0242649_10506762	3300022509	Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGTWLDQDWM
Ga0242667_10001063	3300022513	Soil	VTTEDRERVVPRLRGEAWETPLAEEIRVSPECAAYMGAWGDQDWM
Ga0242667_10373392	3300022513	Soil	MDREHTVHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWM
Ga0242667_10475271	3300022513	Soil	VTAEDRERVIHRPKGEVWETPLAEEIRVSPECSAYMGAWTDQDWM
Ga0242663_10474032	3300022523	Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWM
Ga0242656_10048572	3300022525	Soil	MDREHNVHRPEEHVWETPLAEEIRISPEACAYMGAWKDQDWM
Ga0242669_10166942	3300022528	Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWM
Ga0242669_10823842	3300022528	Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWM
Ga0242660_12376651	3300022531	Soil	RQQKEVTAMDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0242655_100030123	3300022532	Soil	MDREHAVHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWI
Ga0242670_10343711	3300022708	Soil	HTVHRPQEHVWETPLAEEIRVSPEACAYMGAWMDQDWT
Ga0242653_10932141	3300022712	Soil	VTAMDREHGAHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWM
Ga0207692_108400181	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	RERVIHQPQGDVWETPLAEEIRVSPECSAYMGAWKDQDWM
Ga0207647_100478372	3300025904	Corn Rhizosphere	VTAKDREGVNPRLQGGVWETPLAEEIRVSPECSAYMGAWQDQDWM
Ga0207699_113489442	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWQDQDWM
Ga0207652_102535842	3300025921	Corn Rhizosphere	VTAKDREGVNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM
Ga0207664_113946491	3300025929	Agricultural Soil	RKEVTAMDREHVVHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWI
Ga0207665_102454012	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VTAEDRERVIRQPRGDVWETPLAEEIRVSPECSAYMGAWQDQDWM
Ga0207667_113001952	3300025949	Corn Rhizosphere	VTAKDREGVNPRLQGGVWETPLAEEIRVSPECSAYMGTW
Ga0207640_109983181	3300025981	Corn Rhizosphere	KDREGVNPRLQGGVWETPLAEEIRVSPECSAYMGTWKDQDWM
Ga0179593_11661302	3300026555	Vadose Zone Soil	VTAEDRERVVLRPQGDVWETPLAEEIRVSPECSAYMGAWKDQDWM
Ga0209177_104431092	3300027775	Agricultural Soil	MDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWKDQDWM
Ga0209488_108438482	3300027903	Vadose Zone Soil	MDREHTTHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWM
Ga0222748_10603642	3300029701	Soil	MDREHGAHRPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0210274_13774082	3300030531	Soil	REDFVPLPQRHVWETPEAQEIGVSAECSAYMGVWKDQDWD
Ga0210272_11453212	3300030573	Soil	MDREDFVPQRQWETPEAQEIGVSAECSAYMGVWQDKDWD
Ga0265393_10572042	3300030586	Soil	GGEAMDREDFVPRPQRHVWETPEAQEIGVSAECSAYMGVWQDKDWD
Ga0210287_12356601	3300030598	Soil	MDREDFVPQRQWETPEAQEIGVSAECSAYMGVWKDQDWD
Ga0265767_1054712	3300030836	Soil	MDREHGAHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWM
Ga0265766_10063942	3300030863	Soil	MDREHVVHHPQEHVWETPLAEEIRVSPEACAYMGAWKDQDWI
Ga0138296_15811461	3300030923	Soil	EVTAMDREHTVHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWM
Ga0138298_13381602	3300031015	Soil	MDREHTVHRPQEHVWETPLAEEIRVSPEACAYMGAWEDQDWM
Ga0170834_1000297942	3300031057	Forest Soil	PVTAEDRERVVLRPRGDVWESPLAEEIRVSPECSAYMGAWTDQDWM
Ga0170823_140563752	3300031128	Forest Soil	PVTAEDRERVVLRPRGDVWESPLAEEIRVSPECSAYMGAWKDQDWM
Ga0170824_1112706391	3300031231	Forest Soil	RQRKEVTAMDREHTVHRPQEHVWETPLAEEIRVSPECSAYMGAWKDQDWM
Ga0170818_1045256662	3300031474	Forest Soil	VTAEDRERVVLRPQGDVWETPLAEEIRVSPECSAYMGVWKDQDWM
Ga0170818_1083722022	3300031474	Forest Soil	RQRKEVTAMDREHTVHRPQEHVWETPLAEEIRISPEACAYMGAWKDQDWM
Ga0318562_102405032	3300032008	Soil	VDRERVVPPHGDVWETPFAEEIRVSSEASAYMGTWKDQDWM
Ga0348332_123868592	3300032515	Plant Litter	MDRENSAHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWM
Ga0348332_141050142	3300032515	Plant Litter	MDREDFVPRPQWHVWETPEAQEIGVSAECSAYMGVWKDQDWD
Ga0335085_104475492	3300032770	Soil	MDREHVAHRPQEHVWETPLAEEIRVSPEACAYMGAWQDQDWM
Ga0335074_102215672	3300032895	Soil	VDRERVDPRPQGIAWETPFAEEIRVSPEACAYMGAWKDQDWM
Ga0335074_103149262	3300032895	Soil	MDREDFVSRPQPHVWETPEAQEIGVSAECSAYMGVWKDQDWD
Ga0335074_108044642	3300032895	Soil	RQHAVRRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWI
Ga0335075_100165363	3300032896	Soil	MDRQHAVHRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWI
Ga0335075_101296602	3300032896	Soil	VDREHVDPRPQGIAWETPFAEEIRVSPEACAYMGAWKDQDWM
Ga0335075_104545751	3300032896	Soil	DRERVDPRPQGIAWETPLAEEIRVSPEACAYMGAWQDQDWM
Ga0335075_114019992	3300032896	Soil	MDREDFVPRPQRQVWETPEAQEIGVSAECSAYMGVWK
Ga0335072_100599518	3300032898	Soil	VDRERVDPRPQGIAWETPLAEEIRVSPEACAYMGAWKDQDWM
Ga0335072_100816694	3300032898	Soil	MDRQHAVRRPQEHVWETPLAEEIRVSPEACAYMGAWKDEDWI
Ga0335073_100796591	3300033134	Soil	RERVDPRPQGIAWETPLAEEIRVSPEACAYMGAWKDQDWM

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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